RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ENTPD5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021236

Ensembl transcript IDs: ENSMUST00000021662.12, ENSMUST00000072061.12, ENSMUST00000110272.9, ENSMUST00000117286.2, ENSMUST00000120942.8, ENSMUST00000122194.8

Found 241 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CATGAGCATAACAGCTCACTCCTGCAAGCCCAAGGTTCAGGAGGCTaGGGCGGGAGAATTGGTAATTCAAGGCAACCTGGGTTACATACT +
Preference number: 1 (lower is better)
Translates to: HEHNSSLLQAQGSGG*GGRIGNSRQPGLHT
Trigger: AGTATGTAACCCAGGTTGCCTTGAATTACCAATTCTCCCGCCTCAGCCTCCTGAACCTTGGGCTTGCAGGAGTGAGCTGTTATGCTCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR TCA 90 bp TGTGTGTGTACTGCAAAGTGCCAAAGAGGCCTCCAGAAGAGACCCTaGGCTGTGTTAGATAACAACACTACAGAAACGGCATGCCCAGCA +
Preference number: 1 (lower is better)
Translates to: CVCTAKCQRGLQKRP*AVLDNNTTETACPA
Trigger: TGCTGGGCATGCCGTTTCTGTAGTGTTGTTATCTAACACAGCTCAGGGTCTCTTCTGGAGGCCTCTTTGGCACTTTGCAGTACACACACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR TCA 90 bp CCTCGCATGCATGACCTGTGTTCAACCACAACCCAGAAAACGTCCTaGGAGAGAAAACATGGTTCTCTAATGCTACTCACTGTCCTGACC +
Preference number: 1 (lower is better)
Translates to: PRMHDLCSTTTQKTS*ERKHGSLMLLTVLT
Trigger: GGTCAGGACAGTGAGTAGCATTAGAGAACCATGTTTTCTCTCTCAGGACGTTTTCTGGGTTGTGGTTGAACACAGGTCATGCATGCGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR GCA 90 bp CTAGGCAGGAAAGCAGGACTATACAAGCATAGTGCTAGCACATTGTaGTTAACATTCAAGAAGTCCTGGGTTCGATTCCCAGCACTTTCC +
Preference number: 1 (lower is better)
Translates to: LGRKAGLYKHSASTL*LTFKKSWVRFPALS
Trigger: GGAAAGTGCTGGGAATCGAACCCAGGACTTCTTGAATGTTAAGCACAATGTGCTAGCACTATGCTTGTATAGTCCTGCTTTCCTGCCTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR TCA 90 bp GATCTTTCAGGTAATGACTTTAAAGAGCTAAATAATGCAGTAGAGTaGGTACCCATGCCTCGCATGCATGACCTGTGTTCAACCACAACC +
Preference number: 1 (lower is better)
Translates to: DLSGNDFKELNNAVE*VPMPRMHDLCSTTT
Trigger: GGTTGTGGTTGAACACAGGTCATGCATGCGAGGCATGGGTACTCACTCTACTGCATTATTTAGCTCTTTAAAGTCATTACCTGAAAGATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR CAA 90 bp GCTCACTCCTGCAAGCCCAAGGTTCAGGAGGCTGAGGCGGGAGAATaGGTAATTCAAGGCAACCTGGGTTACATACTGAGTTCCAGGCCA +
Preference number: 2 (lower is better)
Translates to: AHSCKPKVQEAEAGE*VIQGNLGYILSSRP
Trigger: TGGCCTGGAACTCAGTATGTAACCCAGGTTGCCTTGAATTACCAATTCTCCCGCCTCAGCCTCCTGAACCTTGGGCTTGCAGGAGTGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR GCA 90 bp CCAGTAATAAAACAATACACGATCTCATCGCACGCACAGCTGCAGAGGCCTCAGAAGAGGAGGGCAAAGTaGTGTGACAGGAGCCAAGCG +
Preference number: 2 (lower is better)
Translates to: PVIKQYTISSHAQLQRPQKRRAK*CDRSQA
Trigger: CGCTTGGCTCCTGTCACAGCACTTTGCCCTCCTCTT...CTGAGGCCTCTGCAGCTGTGCGTGCGATGAGATCGTGTATTGTTTTATTACTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR TCA 90 bp AACAATACACACTTTATAGCTAGGGCCCCTGTGTCTGAGGTGTCAGAGACCAGCACCTGGGTTACATACTaGGTTCCAGGCCAGCCTGAA +
Preference number: 2 (lower is better)
Translates to: NNTHFIARAPVSEVSETSTWVTY*VPGQPE
Trigger: TTCAGGCTGGCCTGGAACTCAGTATGTAACCCAGGT...GCTGGTCTCTGACACCTCAGACACAGGGGCCCTAGCTATAAAGTGTGTATTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR CAA 90 bp GCACAGGTCCTCCTTGTGTGGCTGAGTGCTTCATTATTTGGGGTTTaGAAGTGTGTGTGTACTGCAAAGTGCCAAAGAGGCCTCCAGAAG +
Preference number: 2 (lower is better)
Translates to: AQVLLVWLSASLFGV*KCVCTAKCQRGLQK
Trigger: CTTCTGGAGGCCTCTTTGGCACTTTGCAGTACACACACACTTCAAAACCCCAAATAATGAAGCACTCAGCCACACAAGGAGGACCTGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR GCA 90 bp AAACGAGATTGTTCTTTGGTCCCCAGGGACCTGTCTCTGAACTCGCAATCTAGCAGATTTACAGTCTGGTaGCAGCCATGCACCCACCAA +
Preference number: 2 (lower is better)
Translates to: KRDCSLVPRDLSLNSQSSRFTVW*QPCTHQ
Trigger: TTGGTGGGTGCATGGCTGGCACCAGACTGTAAATCT...GCTAGATTGCGAGTTCAGAGACAGGTCCCTGGGGACCAAAGAACAATCTCGTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
ENSMUST00000122194.8
3UTR-3UTR GCA 90 bp CTGTGGAACAATACACACTTTATAGCTAGGGCCCCTGTGTCTGAGGTGTCAGAGAACTTGCAGTCCTCCTaGCTCAGCTTCAAGGTAGCT +
Preference number: 2 (lower is better)
Translates to: LWNNTHFIARAPVSEVSENLQSS*LSFKVA
Trigger: AGCTACCTTGAAGCTGAGGCAGGAGGACTGCAAGTT...CTCTGACACCTCAGACACAGGGGCCCTAGCTATAAAGTGTGTATTGTTCCACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR CCA 90 bp GTCCCCAGGGACCTGTCTCTGAACTCGCAATCTAGCATGGAGTTCCAAACCTTTAAAAGATTTACAGTCTaGTGCCAGCCATGCACCCAC +
Preference number: 2 (lower is better)
Translates to: VPRDLSLNSQSSMEFQTFKRFTV*CQPCTH
Trigger: GTGGGTGCATGGCTGGCACCAGACTGTAAATCTTTT...AAAGGTTTGGAACTCCATGCTAGATTGCGAGTTCAGAGACAGGTCCCTGGGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
ENSMUST00000122194.8
3UTR-3UTR CCA 90 bp CCAGTAATAAAACAATACACGATCTCATCGCACGCACAGCTGCAGAGGCCTCAGAACGAGATTGTTCTTTaGTCCCCAGGGACCTGTCTC +
Preference number: 2 (lower is better)
Translates to: PVIKQYTISSHAQLQRPQNEIVL*SPGTCL
Trigger: GAGACAGGTCCCTGGGGACCAAAGAACAATCTCGTT...CTGAGGCCTCTGCAGCTGTGCGTGCGATGAGATCGTGTATTGTTTTATTACTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR CCA 90 bp CTGTGGAACAATACACACTTTATAGCTAGGGCCCCTGTGTCTGAGGTGTCAGAGGAAAACTTCCTGGGCTaGAAAGAGAAGAGGAGGGCA +
Preference number: 2 (lower is better)
Translates to: LWNNTHFIARAPVSEVSEENFLG*KEKRRA
Trigger: TGCCCTCCTCTTCTCTTTCCAGCCCAGGAAGTTTTC...CTCTGACACCTCAGACACAGGGGCCCTAGCTATAAAGTGTGTATTGTTCCACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR TCA 90 bp CAAAGAATCCCAAAAGATTTACAGTCTGGTGCCAGCCATGCACCCACCAAGTGGGTCCACGCCTTCCTGTaGGAAAACTGTTCAGAAATG +
Preference number: 2 (lower is better)
Translates to: QRIPKDLQSGASHAPTKWVHAFL*ENCSEM
Trigger: CATTTCTGAACAGTTTTCTCACAGGAAGGCGTGGAC...CCACTTGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTTTGGGATTCTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
3UTR-3UTR GCA 90 bp CCAGTTAACGGGTTTCGGGCCAGGCTTTTCCAGAGAGGTCAGAAAATGTCTCTGAAAACTGTTCAGAAATaGAGGCTTCAGAGGTGGAGC +
Preference number: 2 (lower is better)
Translates to: PVNGFRARLFQRGQKMSLKTVQK*RLQRWS
Trigger: GCTCCACCTCTGAAGCCTGCATTTCTGAACAGTTTT...CAGAGACATTTTCTGACCTCTCTGGAAAAGCCTGGCCCGAAACCCGTTAACTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
3UTR-3UTR GCA 90 bp CAGGTCCTCCTTGTGTGGCTGAGTGCTTCATTATTTGGGGTTTTGAAGTGTGTGAGATTTACAGTCTGGTaGCAGCCATGCACCCACCAA +
Preference number: 2 (lower is better)
Translates to: QVLLVWLSASLFGVLKCVRFTVW*QPCTHQ
Trigger: TTGGTGGGTGCATGGCTGGCACCAGACTGTAAATCT...CACACACTTCAAAACCCCAAATAATGAAGCACTCAGCCACACAAGGAGGACCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR GCA 90 bp CTGTGGAACAATACACACTTTATAGCTAGGGCCCCTGTGTCTGAGGTGTCAGAGAGTGTTGCACTGAGTTaGCCACAGCAAGCCTATAAC +
Preference number: 2 (lower is better)
Translates to: LWNNTHFIARAPVSEVSESVALS*PQQAYN
Trigger: GTTATAGGCTTGCTGTGGGCAACTCAGTGCAACACT...CTCTGACACCTCAGACACAGGGGCCCTAGCTATAAAGTGTGTATTGTTCCACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR GCA 90 bp CCAGTAATAAAACAATACACGATCTCATCGCACGCACAGCTGCAGAGGCCTCAGGAAGTGTGTGTGTACTaGAAAGTGCCAAAGAGGCCT +
Preference number: 2 (lower is better)
Translates to: PVIKQYTISSHAQLQRPQEVCVY*KVPKRP
Trigger: AGGCCTCTTTGGCACTTTGCAGTACACACACACTTC...CTGAGGCCTCTGCAGCTGTGCGTGCGATGAGATCGTGTATTGTTTTATTACTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR CAA 90 bp GGCCTAGGCAGGAAAGCAGGACTATACAAGCATAGTGCTAGCACATaGTGCTTAACATTCAAGAAGTCCTGGGTTCGATTCCCAGCACTT +
Preference number: 2 (lower is better)
Translates to: GLGRKAGLYKHSAST*CLTFKKSWVRFPAL
Trigger: AAGTGCTGGGAATCGAACCCAGGACTTCTTGAATGTTAAGCACAATGTGCTAGCACTATGCTTGTATAGTCCTGCTTTCCTGCCTAGGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR GCA 90 bp AATCCCAAAAGATTTACAGTCTGGTGCCAGCCATGCACCCACCAAGTGGTTAGGAAAACTGTTCAGAAATaGAGGCTTCAGAGGTGGAGC +
Preference number: 2 (lower is better)
Translates to: NPKRFTVWCQPCTHQVVRKTVQK*RLQRWS
Trigger: GCTCCACCTCTGAAGCCTGCATTTCTGAACAGTTTT...CCTAACCACTTGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTTTGGGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
3UTR-3UTR GCA 90 bp TACTACACAAACAAAGGAATCTCCAAGATGTTCTCCCTCACTTCACTTGGCAACAAGAGGAGGGCAAAGTaGTGTGACAGGAGCCAAGCG +
Preference number: 2 (lower is better)
Translates to: YYTNKGISKMFSLTSLGNKRRAK*CDRSQA
Trigger: CGCTTGGCTCCTGTCACAGCACTTTGCCCTCCTCTT...GTTGCCAAGTGAAGTGAGGGAGAACATCTTGGAGATTCCTTTGTTTGTGTAGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR TCA 90 bp CATGGTTCTCTAATGCTACTCACTGTCCTGACCTGTACCAATATGGACCAAAATCAAGGTTCAGGAGGCTaGGGCGGGAGAATTGGTAAT +
Preference number: 2 (lower is better)
Translates to: HGSLMLLTVLTCTNMDQNQGSGG*GGRIGN
Trigger: ATTACCAATTCTCCCGCCTCAGCCTCCTGAACCTTG...ATTTTGGTCCATATTGGTACAGGTCAGGACAGTGAGTAGCATTAGAGAACCATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR TCA 90 bp TACTACACAAACAAAGGAATCTCCAAGATGTTCTCCCTCACTTCACTTGGCAACCAAGGTTCAGGAGGCTaGGGCGGGAGAATTGGTAAT +
Preference number: 2 (lower is better)
Translates to: YYTNKGISKMFSLTSLGNQGSGG*GGRIGN
Trigger: ATTACCAATTCTCCCGCCTCAGCCTCCTGAACCTTG...GTTGCCAAGTGAAGTGAGGGAGAACATCTTGGAGATTCCTTTGTTTGTGTAGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR TCA 90 bp TGGCTGAGTGCTTCATTATTTGGGGTTTTGAAGTGTGTGTGTACTGCAAAGTGCGGGGTTCTGAGATCCTaGGCTAGACAACGAATTCAG +
Preference number: 2 (lower is better)
Translates to: WLSASLFGVLKCVCTAKCGVLRS*ARQRIQ
Trigger: CTGAATTCGTTGTCTAGCTCAGGATCTCAGAACCCC...GCACTTTGCAGTACACACACACTTCAAAACCCCAAATAATGAAGCACTCAGCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR TCA 90 bp CAGGTCCTCCTTGTGTGGCTGAGTGCTTCATTATTTGGGGTTTTGAAGTGTGTGACCCAGAAAACGTCCTaGGAGAGAAAACATGGTTCT +
Preference number: 2 (lower is better)
Translates to: QVLLVWLSASLFGVLKCVTQKTS*ERKHGS
Trigger: AGAACCATGTTTTCTCTCTCAGGACGTTTTCTGGGT...CACACACTTCAAAACCCCAAATAATGAAGCACTCAGCCACACAAGGAGGACCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR GCA 90 bp CAGGTCCTCCTTGTGTGGCTGAGTGCTTCATTATTTGGGGTTTTGAAGTGTGTGAAAACTGTTCAGAAATaGAGGCTTCAGAGGTGGAGC +
Preference number: 2 (lower is better)
Translates to: QVLLVWLSASLFGVLKCVKTVQK*RLQRWS
Trigger: GCTCCACCTCTGAAGCCTGCATTTCTGAACAGTTTT...CACACACTTCAAAACCCCAAATAATGAAGCACTCAGCCACACAAGGAGGACCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR GCA 90 bp AATAAAAGATGGCAGCCGCTGGAAAATGATGATGGCTACAACCTCTCAGGACAAAACTTGCAGTCCTCCTaGCTCAGCTTCAAGGTAGCT +
Preference number: 2 (lower is better)
Translates to: NKRWQPLENDDGYNLSGQNLQSS*LSFKVA
Trigger: AGCTACCTTGAAGCTGAGGCAGGAGGACTGCAAGTT...TTGTCCTGAGAGGTTGTAGCCATCATCATTTTCCAGCGGCTGCCATCTTTTATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR GCA 90 bp CCAGTAATAAAACAATACACGATCTCATCGCACGCACAGCTGCAGAGGCCTCAGCCTTGTGTGGCTGAGTaGTTCATTATTTGGGGTTTT +
Preference number: 2 (lower is better)
Translates to: PVIKQYTISSHAQLQRPQPCVAE*FIIWGF
Trigger: AAAACCCCAAATAATGAAGCACTCAGCCACACAAGG...CTGAGGCCTCTGCAGCTGTGCGTGCGATGAGATCGTGTATTGTTTTATTACTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR CCA 90 bp TGGCTGAGTGCTTCATTATTTGGGGTTTTGAAGTGTGTGTGTACTGCAAAGTGCAACGAGATTGTTCTTTaGTCCCCAGGGACCTGTCTC +
Preference number: 2 (lower is better)
Translates to: WLSASLFGVLKCVCTAKCNEIVL*SPGTCL
Trigger: GAGACAGGTCCCTGGGGACCAAAGAACAATCTCGTT...GCACTTTGCAGTACACACACACTTCAAAACCCCAAATAATGAAGCACTCAGCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR CCA 90 bp AATAAAAGATGGCAGCCGCTGGAAAATGATGATGGCTACAACCTCTCAGGACAAATAAACACATGGGCTTaGGAGGCAGTGCTGACTGAC +
Preference number: 2 (lower is better)
Translates to: NKRWQPLENDDGYNLSGQINTWA*EAVLTD
Trigger: GTCAGTCAGCACTGCCTCCCAAGCCCATGTGTTTAT...TTGTCCTGAGAGGTTGTAGCCATCATCATTTTCCAGCGGCTGCCATCTTTTATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR TCA 90 bp CATGGTTCTCTAATGCTACTCACTGTCCTGACCTGTACCAATATGGACCAAAATGGGGTTCTGAGATCCTaGGCTAGACAACGAATTCAG +
Preference number: 2 (lower is better)
Translates to: HGSLMLLTVLTCTNMDQNGVLRS*ARQRIQ
Trigger: CTGAATTCGTTGTCTAGCTCAGGATCTCAGAACCCC...ATTTTGGTCCATATTGGTACAGGTCAGGACAGTGAGTAGCATTAGAGAACCATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR TCA 90 bp ATAAAAGATGGCAGCCGCTGGAAAATGATGATGGCTACAACCTCTCAGGACAAGACCCAGAAAACGTCCTaGGAGAGAAAACATGGTTCT +
Preference number: 2 (lower is better)
Translates to: IKDGSRWKMMMATTSQDKTQKTS*ERKHGS
Trigger: AGAACCATGTTTTCTCTCTCAGGACGTTTTCTGGGT...CTTGTCCTGAGAGGTTGTAGCCATCATCATTTTCCAGCGGCTGCCATCTTTTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR TCA 90 bp TACTACACAAACAAAGGAATCTCCAAGATGTTCTCCCTCACTTCACTTGGCAACTCCTCCTTGTGTGGCTaGGTGCTTCATTATTTGGGG +
Preference number: 2 (lower is better)
Translates to: YYTNKGISKMFSLTSLGNSSLCG*VLHYLG
Trigger: CCCCAAATAATGAAGCACTCAGCCACACAAGGAGGA...GTTGCCAAGTGAAGTGAGGGAGAACATCTTGGAGATTCCTTTGTTTGTGTAGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR TCA 90 bp AAACATGGTTCTCTAATGCTACTCACTGTCCTGACCTGTACCAATATGGACCAAGTCCACGCCTTCCTGTaGGAAAACTGTTCAGAAATG +
Preference number: 2 (lower is better)
Translates to: KHGSLMLLTVLTCTNMDQVHAFL*ENCSEM
Trigger: CATTTCTGAACAGTTTTCTCACAGGAAGGCGTGGAC...TTGGTCCATATTGGTACAGGTCAGGACAGTGAGTAGCATTAGAGAACCATGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR TCA 90 bp CATGGTTCTCTAATGCTACTCACTGTCCTGACCTGTACCAATATGGACCAAAATGTCCACGCCTTCCTGTaGGAAAACTGTTCAGAAATG +
Preference number: 2 (lower is better)
Translates to: HGSLMLLTVLTCTNMDQNVHAFL*ENCSEM
Trigger: CATTTCTGAACAGTTTTCTCACAGGAAGGCGTGGAC...ATTTTGGTCCATATTGGTACAGGTCAGGACAGTGAGTAGCATTAGAGAACCATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR GCA 90 bp AATAAAAGATGGCAGCCGCTGGAAAATGATGATGGCTACAACCTCTCAGGACAAAAAACTGTTCAGAAATaGAGGCTTCAGAGGTGGAGC +
Preference number: 2 (lower is better)
Translates to: NKRWQPLENDDGYNLSGQKTVQK*RLQRWS
Trigger: GCTCCACCTCTGAAGCCTGCATTTCTGAACAGTTTT...TTGTCCTGAGAGGTTGTAGCCATCATCATTTTCCAGCGGCTGCCATCTTTTATT
44% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR GCA 90 bp CTGACCTGTACCAATATGGACCAAAATAGCCAACCAAACCAAATTTGGGTATCAAGATTTACAGTCTGGTaGCAGCCATGCACCCACCAA +
Preference number: 2 (lower is better)
Translates to: LTCTNMDQNSQPNQIWVSRFTVW*QPCTHQ
Trigger: TTGGTGGGTGCATGGCTGGCACCAGACTGTAAATCT...TGATACCCAAATTTGGTTTGGTTGGCTATTTTGGTCCATATTGGTACAGGTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR CCA 90 bp AAACATGGTTCTCTAATGCTACTCACTGTCCTGACCTGTACCAATATGGACCAATCATTACGTCCAGAGTaGCAACAGCTATCCCTTGAG +
Preference number: 2 (lower is better)
Translates to: KHGSLMLLTVLTCTNMDQSLRPE*QQLSLE
Trigger: CTCAAGGGATAGCTGTTGCCACTCTGGACGTAATGA...TTGGTCCATATTGGTACAGGTCAGGACAGTGAGTAGCATTAGAGAACCATGTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR CCA 90 bp TGGCTGAGTGCTTCATTATTTGGGGTTTTGAAGTGTGTGTGTACTGCAAAGTGCGAGATGAAAACTTCCTaGGCTGGAAAGAGAAGAGGA +
Preference number: 2 (lower is better)
Translates to: WLSASLFGVLKCVCTAKCEMKTS*AGKRRG
Trigger: TCCTCTTCTCTTTCCAGCCCAGGAAGTTTTCATCTC...GCACTTTGCAGTACACACACACTTCAAAACCCCAAATAATGAAGCACTCAGCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR TCA 90 bp CTGACCTGTACCAATATGGACCAAAATAGCCAACCAAACCAAATTTGGGTATCAGTCCACGCCTTCCTGTaGGAAAACTGTTCAGAAATG +
Preference number: 2 (lower is better)
Translates to: LTCTNMDQNSQPNQIWVSVHAFL*ENCSEM
Trigger: CATTTCTGAACAGTTTTCTCACAGGAAGGCGTGGAC...TGATACCCAAATTTGGTTTGGTTGGCTATTTTGGTCCATATTGGTACAGGTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR TCA 90 bp TACTACACAAACAAAGGAATCTCCAAGATGTTCTCCCTCACTTCACTTGGCAACACCCAGAAAACGTCCTaGGAGAGAAAACATGGTTCT +
Preference number: 2 (lower is better)
Translates to: YYTNKGISKMFSLTSLGNTQKTS*ERKHGS
Trigger: AGAACCATGTTTTCTCTCTCAGGACGTTTTCTGGGT...GTTGCCAAGTGAAGTGAGGGAGAACATCTTGGAGATTCCTTTGTTTGTGTAGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR GCA 90 bp TACTACACAAACAAAGGAATCTCCAAGATGTTCTCCCTCACTTCACTTGGCAACAAAACTGTTCAGAAATaGAGGCTTCAGAGGTGGAGC +
Preference number: 2 (lower is better)
Translates to: YYTNKGISKMFSLTSLGNKTVQK*RLQRWS
Trigger: GCTCCACCTCTGAAGCCTGCATTTCTGAACAGTTTT...GTTGCCAAGTGAAGTGAGGGAGAACATCTTGGAGATTCCTTTGTTTGTGTAGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR GCA 90 bp CAGGTCCTCCTTGTGTGGCTGAGTGCTTCATTATTTGGGGTTTTGAAGTGTGTGTTGGTTGATCTATTGTaGCACAGGATCACACAAATT +
Preference number: 2 (lower is better)
Translates to: QVLLVWLSASLFGVLKCVLVDLL*HRITQI
Trigger: AATTTGTGTGATCCTGTGGCACAATAGATCAACCAA...CACACACTTCAAAACCCCAAATAATGAAGCACTCAGCCACACAAGGAGGACCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR CCA 90 bp TACTACACAAACAAAGGAATCTCCAAGATGTTCTCCCTCACTTCACTTGGCAACAATTCTATAAACACATaGGCTTGGGAGGCAGTGCTG +
Preference number: 2 (lower is better)
Translates to: YYTNKGISKMFSLTSLGNNSINT*AWEAVL
Trigger: CAGCACTGCCTCCCAAGCCCATGTGTTTATAGAATT...GTTGCCAAGTGAAGTGAGGGAGAACATCTTGGAGATTCCTTTGTTTGTGTAGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR CCA 90 bp AGTAGTATATATAATACACACACAGCATCCACCATGTATGTACCAGACCACATCGAAAACTTCCTGGGCTaGAAAGAGAAGAGGAGGGCA +
Preference number: 2 (lower is better)
Translates to: SSIYNTHTASTMYVPDHIENFLG*KEKRRA
Trigger: TGCCCTCCTCTTCTCTTTCCAGCCCAGGAAGTTTTC...GATGTGGTCTGGTACATACATGGTGGATGCTGTGTGTGTATTATATATACTACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR CCA 90 bp CTGACCTGTACCAATATGGACCAAAATAGCCAACCAAACCAAATTTGGGTATCAAATTCTATAAACACATaGGCTTGGGAGGCAGTGCTG +
Preference number: 2 (lower is better)
Translates to: LTCTNMDQNSQPNQIWVSNSINT*AWEAVL
Trigger: CAGCACTGCCTCCCAAGCCCATGTGTTTATAGAATT...TGATACCCAAATTTGGTTTGGTTGGCTATTTTGGTCCATATTGGTACAGGTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR GCA 72 bp GCAGAGGCCTCAGCAACCAGTCAGAAGGGGCTCAGCTaGTGCACAGGTCCTCCTTGTGTGGCTGAGTGCTTC +
Preference number: 3 (lower is better)
Translates to: AEASATSQKGLS*CTGPPCVAECF
Trigger: GAAGCACTCAGCCACACAAGGAGGACCTGTGCAGCAGCTGAGCCCCTTCTGACTGGTTGCTGAGGCCTCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR GCA 72 bp GAGGCCTCAGCAACCAGTCAGAAGGGGCTCAGCTGCTaGACAGGTCCTCCTTGTGTGGCTGAGTGCTTCATT +
Preference number: 3 (lower is better)
Translates to: EASATSQKGLSC*TGPPCVAECFI
Trigger: AATGAAGCACTCAGCCACACAAGGAGGACCTGTGCAGCAGCTGAGCCCCTTCTGACTGGTTGCTGAGGCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR TCA 72 bp AACAGCTCACTCCTGCAAGCCCAAGGTTCAGGAGGCTaGGGCGGGAGAATTGGTAATTCAAGGCAACCTGGG +
Preference number: 3 (lower is better)
Translates to: NSSLLQAQGSGG*GGRIGNSRQPG
Trigger: CCCAGGTTGCCTTGAATTACCAATTCTCCCGCCTCAGCCTCCTGAACCTTGGGCTTGCAGGAGTGAGCTGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR TCA 72 bp TTCTATAAACACATGGGCTTGGGAGGCAGTGCTGACTaGCACTGGATAGGCACGCATCTCCAGGGCGGAATG +
Preference number: 3 (lower is better)
Translates to: FYKHMGLGGSAD*HWIGTHLQGGM
Trigger: CATTCCGCCCTGGAGATGCGTGCCTATCCAGTGTCAGTCAGCACTGCCTCCCAAGCCCATGTGTTTATAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR GCA 72 bp AGTTGCCCACAGCAAGCCTATAACTTGCAGTCCTCCTaGCTCAGCTTCAAGGTAGCTAGGATTACAGGCCTG +
Preference number: 3 (lower is better)
Translates to: SCPQQAYNLQSS*LSFKVARITGL
Trigger: CAGGCCTGTAATCCTAGCTACCTTGAAGCTGAGGCAGGAGGACTGCAAGTTATAGGCTTGCTGTGGGCAACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR CAA 90 bp AATAAAAGATGGCAGCCGCTGGAAAATGATGATGGCTACAACCTCTCAGGACAAGGCAACAGCTATCCCTaGAGACCCGACGGTCTCCTT +
Preference number: 3 (lower is better)
Translates to: NKRWQPLENDDGYNLSGQGNSYP*RPDGLL
Trigger: AAGGAGACCGTCGGGTCTCAAGGGATAGCTGTTGCC...TTGTCCTGAGAGGTTGTAGCCATCATCATTTTCCAGCGGCTGCCATCTTTTATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR CAA 90 bp CAGGTCCTCCTTGTGTGGCTGAGTGCTTCATTATTTGGGGTTTTGAAGTGTGTGAAACGAGATTGTTCTTaGGTCCCCAGGGACCTGTCT +
Preference number: 3 (lower is better)
Translates to: QVLLVWLSASLFGVLKCVKRDCS*VPRDLS
Trigger: AGACAGGTCCCTGGGGACCAAAGAACAATCTCGTTT...CACACACTTCAAAACCCCAAATAATGAAGCACTCAGCCACACAAGGAGGACCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR CAA 90 bp CAGGTCCTCCTTGTGTGGCTGAGTGCTTCATTATTTGGGGTTTTGAAGTGTGTGGCATGCCAACTAGCTTaGCCACTGAACACTGTCTTC +
Preference number: 3 (lower is better)
Translates to: QVLLVWLSASLFGVLKCVACQLA*PLNTVF
Trigger: GAAGACAGTGTTCAGTGGCAAAGCTAGTTGGCATGC...CACACACTTCAAAACCCCAAATAATGAAGCACTCAGCCACACAAGGAGGACCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR TCA 72 bp ACTGCAAAGTGCCAAAGAGGCCTCCAGAAGAGACCCTaGGCTGTGTTAGATAACAACACTACAGAAACGGCA +
Preference number: 3 (lower is better)
Translates to: TAKCQRGLQKRP*AVLDNNTTETA
Trigger: TGCCGTTTCTGTAGTGTTGTTATCTAACACAGCTCAGGGTCTCTTCTGGAGGCCTCTTTGGCACTTTGCAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR CCA 72 bp GACTCTGTAACAAAGAATCCCAAAAGATTTACAGTCTaGTGCCAGCCATGCACCCACCAAGTGGTTAGGAGC +
Preference number: 3 (lower is better)
Translates to: DSVTKNPKRFTV*CQPCTHQVVRS
Trigger: GCTCCTAACCACTTGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTTTGGGATTCTTTGTTACAGAGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
3UTR-3UTR CAA 90 bp TGGCTGAGTGCTTCATTATTTGGGGTTTTGAAGTGTGTGTGTACTGCAAAGTGCGCTGAGGCGGGAGAATaGGTAATTCAAGGCAACCTG +
Preference number: 3 (lower is better)
Translates to: WLSASLFGVLKCVCTAKCAEAGE*VIQGNL
Trigger: CAGGTTGCCTTGAATTACCAATTCTCCCGCCTCAGC...GCACTTTGCAGTACACACACACTTCAAAACCCCAAATAATGAAGCACTCAGCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR CAA 90 bp TGGCTGAGTGCTTCATTATTTGGGGTTTTGAAGTGTGTGTGTACTGCAAAGTGCAAACGAGATTGTTCTTaGGTCCCCAGGGACCTGTCT +
Preference number: 3 (lower is better)
Translates to: WLSASLFGVLKCVCTAKCKRDCS*VPRDLS
Trigger: AGACAGGTCCCTGGGGACCAAAGAACAATCTCGTTT...GCACTTTGCAGTACACACACACTTCAAAACCCCAAATAATGAAGCACTCAGCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR CAA 90 bp TGGCTGAGTGCTTCATTATTTGGGGTTTTGAAGTGTGTGTGTACTGCAAAGTGCGACAGATCTATGAGTTaGAGGCCAGCCTGGTCTACA +
Preference number: 3 (lower is better)
Translates to: WLSASLFGVLKCVCTAKCDRSMS*RPAWST
Trigger: TGTAGACCAGGCTGGCCTCAAACTCATAGATCTGTC...GCACTTTGCAGTACACACACACTTCAAAACCCCAAATAATGAAGCACTCAGCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR TCA 72 bp GGCAACCTGGGTTACATACTGAGTTCCAGGCCAGCCTaGACAACAAACACAACACAGCCCTTGTCTAAAAAT +
Preference number: 3 (lower is better)
Translates to: GNLGYILSSRPA*TTNTTQPLSKN
Trigger: ATTTTTAGACAAGGGCTGTGTTGTGTTTGTTGTTCAGGCTGGCCTGGAACTCAGTATGTAACCCAGGTTGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR CAA 90 bp CTGACCTGTACCAATATGGACCAAAATAGCCAACCAAACCAAATTTGGGTATCAGCTGAGGCGGGAGAATaGGTAATTCAAGGCAACCTG +
Preference number: 3 (lower is better)
Translates to: LTCTNMDQNSQPNQIWVSAEAGE*VIQGNL
Trigger: CAGGTTGCCTTGAATTACCAATTCTCCCGCCTCAGC...TGATACCCAAATTTGGTTTGGTTGGCTATTTTGGTCCATATTGGTACAGGTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR TCA 72 bp AATGAATCCATTCAAAGCAATGAGGCATCCAAGGGTTaGAACGAGATTGTTCTTTGGTCCCCAGGGACCTGT +
Preference number: 3 (lower is better)
Translates to: NESIQSNEASKG*NEIVLWSPGTC
Trigger: ACAGGTCCCTGGGGACCAAAGAACAATCTCGTTTCAACCCTTGGATGCCTCATTGCTTTGAATGGATTCATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
ENSMUST00000122194.8
3UTR GCA 72 bp TCTGTAACAAAGAATCCCAAAAGATTTACAGTCTGGTaGCAGCCATGCACCCACCAAGTGGTTAGGAGCTAT +
Preference number: 3 (lower is better)
Translates to: SVTKNPKRFTVW*QPCTHQVVRSY
Trigger: ATAGCTCCTAACCACTTGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTTTGGGATTCTTTGTTACAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
3UTR CCA 72 bp GATTTACAGTCTGGTGCCAGCCATGCACCCACCAAGTaGTTAGGAGCTATTCACATTAGATGTGCAAATCAT +
Preference number: 3 (lower is better)
Translates to: DLQSGASHAPTK*LGAIHIRCANH
Trigger: ATGATTTGCACATCTAATGTGAATAGCTCCTAACCACTTGGTGGGTGCATGGCTGGCACCAGACTGTAAATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
3UTR CCA 72 bp AACCACAACCCAGAAAACGTCCTGAGAGAGAAAACATaGTTCTCTAATGCTACTCACTGTCCTGACCTGTAC +
Preference number: 3 (lower is better)
Translates to: NHNPENVLREKT*FSNATHCPDLY
Trigger: GTACAGGTCAGGACAGTGAGTAGCATTAGAGAACCATGTTTTCTCTCTCAGGACGTTTTCTGGGTTGTGGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR-3UTR CAA 90 bp TACTACACAAACAAAGGAATCTCCAAGATGTTCTCCCTCACTTCACTTGGCAACCCAACCAAACCAAATTaGGGTATCACTGGAAAGGGG +
Preference number: 3 (lower is better)
Translates to: YYTNKGISKMFSLTSLGNPTKPN*GITGKG
Trigger: CCCCTTTCCAGTGATACCCAAATTTGGTTTGGTTGG...GTTGCCAAGTGAAGTGAGGGAGAACATCTTGGAGATTCCTTTGTTTGTGTAGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR TCA 72 bp CATGACCTGTGTTCAACCACAACCCAGAAAACGTCCTaGGAGAGAAAACATGGTTCTCTAATGCTACTCACT +
Preference number: 3 (lower is better)
Translates to: HDLCSTTTQKTS*ERKHGSLMLLT
Trigger: AGTGAGTAGCATTAGAGAACCATGTTTTCTCTCTCAGGACGTTTTCTGGGTTGTGGTTGAACACAGGTCATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR CCA 72 bp ACCAATATGGACCAAAATAGCCAACCAAACCAAATTTaGGTATCACTGGAAAGGGGTTCTGAGATCCTGAGC +
Preference number: 3 (lower is better)
Translates to: TNMDQNSQPNQI*VSLERGSEILS
Trigger: GCTCAGGATCTCAGAACCCCTTTCCAGTGATACCCAAATTTGGTTTGGTTGGCTATTTTGGTCCATATTGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR GCA 72 bp AAAGCAGGACTATACAAGCATAGTGCTAGCACATTGTaGTTAACATTCAAGAAGTCCTGGGTTCGATTCCCA +
Preference number: 3 (lower is better)
Translates to: KAGLYKHSASTL*LTFKKSWVRFP
Trigger: TGGGAATCGAACCCAGGACTTCTTGAATGTTAAGCACAATGTGCTAGCACTATGCTTGTATAGTCCTGCTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR CCA 72 bp AATGAGCATTGCTTGCTTACTCTTGGGGAGACAGCTTaGTTTCTCACAACTGTGATAGCATTTAGTGGACTA +
Preference number: 3 (lower is better)
Translates to: NEHCLLTLGETA*FLTTVIAFSGL
Trigger: TAGTCCACTAAATGCTATCACAGTTGTGAGAAACCAAGCTGTCTCCCCAAGAGTAAGCAAGCAATGCTCATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR TCA 72 bp AAATTTGGGTATCACTGGAAAGGGGTTCTGAGATCCTaGGCTAGACAACGAATTCAGAAAATAGCCAAATTC +
Preference number: 3 (lower is better)
Translates to: KFGYHWKGVLRS*ARQRIQKIAKF
Trigger: GAATTTGGCTATTTTCTGAATTCGTTGTCTAGCTCAGGATCTCAGAACCCCTTTCCAGTGATACCCAAATTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR TCA 72 bp ATACTGAGGACAGCTCTAAGCTTTAAATGGGTTGGTTaGTCTATTGTGCCACAGGATCACACAAATTCTAAT +
Preference number: 3 (lower is better)
Translates to: ILRTALSFKWVG*SIVPQDHTNSN
Trigger: ATTAGAATTTGTGTGATCCTGTGGCACAATAGATCAACCAACCCATTTAAAGCTTAGAGCTGTCCTCAGTAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR CCA 72 bp CAAAGGAATCTCCAAGATGTTCTCCCTCACTTCACTTaGCAACAGACCTTTCTAAATAAAGTACTTAAATGC +
Preference number: 3 (lower is better)
Translates to: QRNLQDVLPHFT*QQTFLNKVLKC
Trigger: GCATTTAAGTACTTTATTTAGAAAGGTCTGTTGCCAAGTGAAGTGAGGGAGAACATCTTGGAGATTCCTTTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
3UTR TCA 72 bp TGGTTTCTCACAACTGTGATAGCATTTAGTGGACTATaGCTGGTCGAATACCTTTTTCTTTATATTATTGAC +
Preference number: 3 (lower is better)
Translates to: WFLTTVIAFSGL*LVEYLFLYIID
Trigger: GTCAATAATATAAAGAAAAAGGTATTCGACCAGTCATAGTCCACTAAATGCTATCACAGTTGTGAGAAACCA
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
CDS-3UTR TCA 90 bp CGGGCCAGGCTTTTCCAGAGAGGTCAGAAAATGTCTCTGAGTCCACGCCTTCCTACTGGGGTAGAAACGTaGTTTGGGTGGAGGCACCCC +
Preference number: 4 (lower is better)
Translates to: RARLFQRGQKMSLSPRLPTGVET*FGWRHP
Trigger: GGGGTGCCTCCACCCAAATCACGTTTCTACCCCAGT...AGGAAGGCGTGGACTCAGAGACATTTTCTGACCTCTCTGGAAAAGCCTGGCCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR TCA 90 bp CGGGTTTCGGGCCAGGCTTTTCCAGAGAGGTCAGAAAATGTCTCTGAGTCCACGACTGGGGTAGAAACGTaGTTTGGGTGGAGGCACCCC +
Preference number: 4 (lower is better)
Translates to: RVSGQAFPERSENVSESTTGVET*FGWRHP
Trigger: GGGGTGCCTCCACCCAAATCACGTTTCTACCCCAGT...CGTGGACTCAGAGACATTTTCTGACCTCTCTGGAAAAGCCTGGCCCGAAACCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR TCA 90 bp CAGTCTGGTGCCAGCCATGCACCCACCAAGTGGTTAGGAGCTATTCACATTAGAAGAGACTGGAGCAGGTaGAAGGTGGCCCCCAAGGCC +
Preference number: 4 (lower is better)
Translates to: QSGASHAPTKWLGAIHIRRDWSR*KVAPKA
Trigger: GGCCTTGGGGGCCACCTTTCACCTGCTCCAGTCTCT...TCTAATGTGAATAGCTCCTAACCACTTGGTGGGTGCATGGCTGGCACCAGACTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp CCAGTTAACGGGTTTCGGGCCAGGCTTTTCCAGAGAGGTCAGAAAATGTCTCTGGGAGCAGGTGAAAGGTaGCCCCCAAGGCCCAACCAG +
Preference number: 4 (lower is better)
Translates to: PVNGFRARLFQRGQKMSLGAGER*PPRPNQ
Trigger: CTGGTTGGGCCTTGGGGGCCACCTTTCACCTGCTCC...CAGAGACATTTTCTGACCTCTCTGGAAAAGCCTGGCCCGAAACCCGTTAACTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR GCA 90 bp TCGGGCCAGGCTTTTCCAGAGAGGTCAGAAAATGTCTCTGAGTCCACGCCTTCCCAGGGCTCCCAGAGTTaGCAGTCTTGCAGCTTTCAG +
Preference number: 4 (lower is better)
Translates to: SGQAFPERSENVSESTPSQGSQS*QSCSFQ
Trigger: CTGAAAGCTGCAAGACTGGCAACTCTGGGAGCCCTG...GGAAGGCGTGGACTCAGAGACATTTTCTGACCTCTCTGGAAAAGCCTGGCCCGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR GCA 90 bp CGGGCCAGGCTTTTCCAGAGAGGTCAGAAAATGTCTCTGAGTCCACGCCTTCCTCAGGGCTCCCAGAGTTaGCAGTCTTGCAGCTTTCAG +
Preference number: 4 (lower is better)
Translates to: RARLFQRGQKMSLSPRLPQGSQS*QSCSFQ
Trigger: CTGAAAGCTGCAAGACTGGCAACTCTGGGAGCCCTG...AGGAAGGCGTGGACTCAGAGACATTTTCTGACCTCTCTGGAAAAGCCTGGCCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp TCGGGCCAGGCTTTTCCAGAGAGGTCAGAAAATGTCTCTGAGTCCACGCCTTCCTGGGGATCGAGTCTTTaGCCACCTCCAAGAGCTCCT +
Preference number: 4 (lower is better)
Translates to: SGQAFPERSENVSESTPSWGSSL*PPPRAP
Trigger: AGGAGCTCTTGGAGGTGGCCAAAGACTCGATCCCCA...GGAAGGCGTGGACTCAGAGACATTTTCTGACCTCTCTGGAAAAGCCTGGCCCGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp CGGGTTTCGGGCCAGGCTTTTCCAGAGAGGTCAGAAAATGTCTCTGAGTCCACGTGGGGATCGAGTCTTTaGCCACCTCCAAGAGCTCCT +
Preference number: 4 (lower is better)
Translates to: RVSGQAFPERSENVSESTWGSSL*PPPRAP
Trigger: AGGAGCTCTTGGAGGTGGCCAAAGACTCGATCCCCA...CGTGGACTCAGAGACATTTTCTGACCTCTCTGGAAAAGCCTGGCCCGAAACCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR TCA 90 bp GCCCAAATCACTAGGCTCAAGAGCAAGACTCATCTAAAAACCCCTCCCTCCTTAAGAGACTGGAGCAGGTaGAAGGTGGCCCCCAAGGCC +
Preference number: 4 (lower is better)
Translates to: AQITRLKSKTHLKTPPSLRDWSR*KVAPKA
Trigger: GGCCTTGGGGGCCACCTTTCACCTGCTCCAGTCTCT...TAAGGAGGGAGGGGTTTTTAGATGAGTCTTGCTCTTGAGCCTAGTGATTTGGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR TCA 90 bp AAAGATTTACAGTCTGGTGCCAGCCATGCACCCACCAAGTGGTTAGGAGCTATTAGAGACTGGAGCAGGTaGAAGGTGGCCCCCAAGGCC +
Preference number: 4 (lower is better)
Translates to: KDLQSGASHAPTKWLGAIRDWSR*KVAPKA
Trigger: GGCCTTGGGGGCCACCTTTCACCTGCTCCAGTCTCT...AATAGCTCCTAACCACTTGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp CGGGTTTCGGGCCAGGCTTTTCCAGAGAGGTCAGAAAATGTCTCTGAGTCCACGTTTCCCAGTGGCTTCTaGGGATCGAGTCTTTGGCCA +
Preference number: 4 (lower is better)
Translates to: RVSGQAFPERSENVSESTFPSGF*GSSLWP
Trigger: TGGCCAAAGACTCGATCCCCAGAAGCCACTGGGAAA...CGTGGACTCAGAGACATTTTCTGACCTCTCTGGAAAAGCCTGGCCCGAAACCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp CGGGTTTCGGGCCAGGCTTTTCCAGAGAGGTCAGAAAATGTCTCTGAGTCCACGTCCTCGGACTTCTTCTaGCTGGTGAAGTTTCCCCTG +
Preference number: 4 (lower is better)
Translates to: RVSGQAFPERSENVSESTSSDFF*LVKFPL
Trigger: CAGGGGAAACTTCACCAGCCAGAAGAAGTCCGAGGA...CGTGGACTCAGAGACATTTTCTGACCTCTCTGGAAAAGCCTGGCCCGAAACCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp AAAAGATTTACAGTCTGGTGCCAGCCATGCACCCACCAAGTGGTTAGGAGCTATGGAGCAGGTGAAAGGTaGCCCCCAAGGCCCAACCAG +
Preference number: 4 (lower is better)
Translates to: KRFTVWCQPCTHQVVRSYGAGER*PPRPNQ
Trigger: CTGGTTGGGCCTTGGGGGCCACCTTTCACCTGCTCC...ATAGCTCCTAACCACTTGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp CAGAGAGGTCAGAAAATGTCTCTGAGTCCACGCCTTCCTGTGAGAAAACTGTTCGGAGCAGGTGAAAGGTaGCCCCCAAGGCCCAACCAG +
Preference number: 4 (lower is better)
Translates to: QRGQKMSLSPRLPVRKLFGAGER*PPRPNQ
Trigger: CTGGTTGGGCCTTGGGGGCCACCTTTCACCTGCTCC...GAACAGTTTTCTCACAGGAAGGCGTGGACTCAGAGACATTTTCTGACCTCTCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR TCA 90 bp GGGTTTCGGGCCAGGCTTTTCCAGAGAGGTCAGAAAATGTCTCTGAGTCCACGCGCACCCTGTTTGGGCTaGTCCACAAAAGCAGAAAGT +
Preference number: 4 (lower is better)
Translates to: GFRARLFQRGQKMSLSPRAPCLG*STKAES
Trigger: ACTTTCTGCTTTTGTGGATCAGCCCAAACAGGGTGC...GCGTGGACTCAGAGACATTTTCTGACCTCTCTGGAAAAGCCTGGCCCGAAACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR TCA 90 bp TGTAACAAAGAATCCCAAAAGATTTACAGTCTGGTGCCAGCCATGCACCCACCAAGAGACTGGAGCAGGTaGAAGGTGGCCCCCAAGGCC +
Preference number: 4 (lower is better)
Translates to: CNKESQKIYSLVPAMHPPRDWSR*KVAPKA
Trigger: GGCCTTGGGGGCCACCTTTCACCTGCTCCAGTCTCT...TGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTTTGGGATTCTTTGTTACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR GCA 90 bp GTCCCCAGGGACCTGTCTCTGAACTCGCAATCTAGCATGGAGTTCCAAACCTTTTTGCTGAAGCAGTGCTaGTCACACTCCTGTGGAGGC +
Preference number: 4 (lower is better)
Translates to: VPRDLSLNSQSSMEFQTFLLKQC*SHSCGG
Trigger: GCCTCCACAGGAGTGTGAGCAGCACTGCTTCAGCAA...AAAGGTTTGGAACTCCATGCTAGATTGCGAGTTCAGAGACAGGTCCCTGGGGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000072061.12
CDS-3UTR GCA 90 bp GGGTTTCGGGCCAGGCTTTTCCAGAGAGGTCAGAAAATGTCTCTGAGTCCACGCTTGTTGCTGAAGCAGTaGTGCTCACACTCCTGTGGA +
Preference number: 4 (lower is better)
Translates to: GFRARLFQRGQKMSLSPRLLLKQ*CSHSCG
Trigger: TCCACAGGAGTGTGAGCAGCACTGCTTCAGCAACAA...GCGTGGACTCAGAGACATTTTCTGACCTCTCTGGAAAAGCCTGGCCCGAAACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072061.12
CDS-3UTR CCA 90 bp GTCCCCAGGGACCTGTCTCTGAACTCGCAATCTAGCATGGAGTTCCAAACCTTTTGGGGATCGAGTCTTTaGCCACCTCCAAGAGCTCCT +
Preference number: 4 (lower is better)
Translates to: VPRDLSLNSQSSMEFQTFWGSSL*PPPRAP
Trigger: AGGAGCTCTTGGAGGTGGCCAAAGACTCGATCCCCA...AAAGGTTTGGAACTCCATGCTAGATTGCGAGTTCAGAGACAGGTCCCTGGGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp CAGTCTGGTGCCAGCCATGCACCCACCAAGTGGTTAGGAGCTATTCACATTAGATGGGGATCGAGTCTTTaGCCACCTCCAAGAGCTCCT +
Preference number: 4 (lower is better)
Translates to: QSGASHAPTKWLGAIHIRWGSSL*PPPRAP
Trigger: AGGAGCTCTTGGAGGTGGCCAAAGACTCGATCCCCA...TCTAATGTGAATAGCTCCTAACCACTTGGTGGGTGCATGGCTGGCACCAGACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp AACCAGTTAACGGGTTTCGGGCCAGGCTTTTCCAGAGAGGTCAGAAAATGTCTCGGGGTCCTTTCCCAGTaGCTTCTGGGGATCGAGTCT +
Preference number: 4 (lower is better)
Translates to: NQLTGFGPGFSREVRKCLGVLSQ*LLGIES
Trigger: AGACTCGATCCCCAGAAGCCACTGGGAAAGGACCCC...GAGACATTTTCTGACCTCTCTGGAAAAGCCTGGCCCGAAACCCGTTAACTGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp AACAATACACACTTTATAGCTAGGGCCCCTGTGTCTGAGGTGTCAGAGACCAGCTCCAAGAGCAGAGCCTaGGCTTTCTGCTCAGGCAGC +
Preference number: 4 (lower is better)
Translates to: NNTHFIARAPVSEVSETSSKSRA*AFCSGS
Trigger: GCTGCCTGAGCAGAAAGCCCAGGCTCTGCTCTTGGA...GCTGGTCTCTGACACCTCAGACACAGGGGCCCTAGCTATAAAGTGTGTATTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
CDS-3UTR CCA 90 bp CAAAGAATCCCAAAAGATTTACAGTCTGGTGCCAGCCATGCACCCACCAAGTGGTCCAAGAGCAGAGCCTaGGCTTTCTGCTCAGGCAGC +
Preference number: 4 (lower is better)
Translates to: QRIPKDLQSGASHAPTKWSKSRA*AFCSGS
Trigger: GCTGCCTGAGCAGAAAGCCCAGGCTCTGCTCTTGGA...CCACTTGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTTTGGGATTCTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp GAAAATGTCTCTGAGTCCACGCCTTCCTGTGAGAAAACTGTTCAGAAATGCAGGGGAGCAGGTGAAAGGTaGCCCCCAAGGCCCAACCAG +
Preference number: 4 (lower is better)
Translates to: ENVSESTPSCEKTVQKCRGAGER*PPRPNQ
Trigger: CTGGTTGGGCCTTGGGGGCCACCTTTCACCTGCTCC...CCTGCATTTCTGAACAGTTTTCTCACAGGAAGGCGTGGACTCAGAGACATTTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR TCA 90 bp AGGTCAGAAAATGTCTCTGAGTCCACGCCTTCCTGTGAGAAAACTGTTCAGAAAAGAGACTGGAGCAGGTaGAAGGTGGCCCCCAAGGCC +
Preference number: 4 (lower is better)
Translates to: RSENVSESTPSCEKTVQKRDWSR*KVAPKA
Trigger: GGCCTTGGGGGCCACCTTTCACCTGCTCCAGTCTCT...TTTCTGAACAGTTTTCTCACAGGAAGGCGTGGACTCAGAGACATTTTCTGACCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR TCA 90 bp TGGCTGAGTGCTTCATTATTTGGGGTTTTGAAGTGTGTGTGTACTGCAAAGTGCAGAGACTGGAGCAGGTaGAAGGTGGCCCCCAAGGCC +
Preference number: 4 (lower is better)
Translates to: WLSASLFGVLKCVCTAKCRDWSR*KVAPKA
Trigger: GGCCTTGGGGGCCACCTTTCACCTGCTCCAGTCTCT...GCACTTTGCAGTACACACACACTTCAAAACCCCAAATAATGAAGCACTCAGCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
CDS-3UTR GCA 90 bp TCGGGCCAGGCTTTTCCAGAGAGGTCAGAAAATGTCTCTGAGTCCACGCCTTCCCAGAGTTGCCAGTCTTaGAGCTTTCAGTCCAAATCC +
Preference number: 4 (lower is better)
Translates to: SGQAFPERSENVSESTPSQSCQS*SFQSKS
Trigger: GGATTTGGACTGAAAGCTGCAAGACTGGCAACTCTG...GGAAGGCGTGGACTCAGAGACATTTTCTGACCTCTCTGGAAAAGCCTGGCCCGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp CAAAGAATCCCAAAAGATTTACAGTCTGGTGCCAGCCATGCACCCACCAAGTGGTGGGGATCGAGTCTTTaGCCACCTCCAAGAGCTCCT +
Preference number: 4 (lower is better)
Translates to: QRIPKDLQSGASHAPTKWWGSSL*PPPRAP
Trigger: AGGAGCTCTTGGAGGTGGCCAAAGACTCGATCCCCA...CCACTTGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTTTGGGATTCTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp CAGGTCCTCCTTGTGTGGCTGAGTGCTTCATTATTTGGGGTTTTGAAGTGTGTGGGGGTCCTTTCCCAGTaGCTTCTGGGGATCGAGTCT +
Preference number: 4 (lower is better)
Translates to: QVLLVWLSASLFGVLKCVGVLSQ*LLGIES
Trigger: AGACTCGATCCCCAGAAGCCACTGGGAAAGGACCCC...CACACACTTCAAAACCCCAAATAATGAAGCACTCAGCCACACAAGGAGGACCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
CDS-3UTR CCA 90 bp AAAGATTTACAGTCTGGTGCCAGCCATGCACCCACCAAGTGGTTAGGAGCTATTTCCAAGAGCAGAGCCTaGGCTTTCTGCTCAGGCAGC +
Preference number: 4 (lower is better)
Translates to: KDLQSGASHAPTKWLGAISKSRA*AFCSGS
Trigger: GCTGCCTGAGCAGAAAGCCCAGGCTCTGCTCTTGGA...AATAGCTCCTAACCACTTGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp CAGAGAGGTCAGAAAATGTCTCTGAGTCCACGCCTTCCTGTGAGAAAACTGTTCTCCAAGAGCAGAGCCTaGGCTTTCTGCTCAGGCAGC +
Preference number: 4 (lower is better)
Translates to: QRGQKMSLSPRLPVRKLFSKSRA*AFCSGS
Trigger: GCTGCCTGAGCAGAAAGCCCAGGCTCTGCTCTTGGA...GAACAGTTTTCTCACAGGAAGGCGTGGACTCAGAGACATTTTCTGACCTCTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp ACAAAGAATCCCAAAAGATTTACAGTCTGGTGCCAGCCATGCACCCACCAAGTGTCCAAGAGCAGAGCCTaGGCTTTCTGCTCAGGCAGC +
Preference number: 4 (lower is better)
Translates to: TKNPKRFTVWCQPCTHQVSKSRA*AFCSGS
Trigger: GCTGCCTGAGCAGAAAGCCCAGGCTCTGCTCTTGGA...CACTTGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTTTGGGATTCTTTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp AGGTCAGAAAATGTCTCTGAGTCCACGCCTTCCTGTGAGAAAACTGTTCAGAAAGGAGCAGGTGAAAGGTaGCCCCCAAGGCCCAACCAG +
Preference number: 4 (lower is better)
Translates to: RSENVSESTPSCEKTVQKGAGER*PPRPNQ
Trigger: CTGGTTGGGCCTTGGGGGCCACCTTTCACCTGCTCC...TTTCTGAACAGTTTTCTCACAGGAAGGCGTGGACTCAGAGACATTTTCTGACCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR TCA 90 bp CGGGCCAGGCTTTTCCAGAGAGGTCAGAAAATGTCTCTGAGTCCACGCCTTCCTGGAAAGGTGAATTCTTaGAGATCTCCTCTACCTCCA +
Preference number: 4 (lower is better)
Translates to: RARLFQRGQKMSLSPRLPGKVNS*RSPLPP
Trigger: TGGAGGTAGAGGAGATCTTCAAGAATTCACCTTTCC...AGGAAGGCGTGGACTCAGAGACATTTTCTGACCTCTCTGGAAAAGCCTGGCCCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR TCA 90 bp AAAATGTCTCTGAGTCCACGCCTTCCTGTGAGAAAACTGTTCAGAAATGCAGGCACTGGGGTAGAAACGTaGTTTGGGTGGAGGCACCCC +
Preference number: 4 (lower is better)
Translates to: KMSLSPRLPVRKLFRNAGTGVET*FGWRHP
Trigger: GGGGTGCCTCCACCCAAATCACGTTTCTACCCCAGT...GCCTGCATTTCTGAACAGTTTTCTCACAGGAAGGCGTGGACTCAGAGACATTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR GCA 90 bp AAAGATTTACAGTCTGGTGCCAGCCATGCACCCACCAAGTGGTTAGGAGCTATTCAGGGCTCCCAGAGTTaGCAGTCTTGCAGCTTTCAG +
Preference number: 4 (lower is better)
Translates to: KDLQSGASHAPTKWLGAIQGSQS*QSCSFQ
Trigger: CTGAAAGCTGCAAGACTGGCAACTCTGGGAGCCCTG...AATAGCTCCTAACCACTTGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp CAAAGAATCCCAAAAGATTTACAGTCTGGTGCCAGCCATGCACCCACCAAGTGGTTTCCCAGTGGCTTCTaGGGATCGAGTCTTTGGCCA +
Preference number: 4 (lower is better)
Translates to: QRIPKDLQSGASHAPTKWFPSGF*GSSLWP
Trigger: TGGCCAAAGACTCGATCCCCAGAAGCCACTGGGAAA...CCACTTGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTTTGGGATTCTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp GTAACAAAGAATCCCAAAAGATTTACAGTCTGGTGCCAGCCATGCACCCACCAAGGGGTCCTTTCCCAGTaGCTTCTGGGGATCGAGTCT +
Preference number: 4 (lower is better)
Translates to: VTKNPKRFTVWCQPCTHQGVLSQ*LLGIES
Trigger: AGACTCGATCCCCAGAAGCCACTGGGAAAGGACCCC...TTGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTTTGGGATTCTTTGTTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp GAAAATGTCTCTGAGTCCACGCCTTCCTGTGAGAAAACTGTTCAGAAATGCAGGGGGGTCCTTTCCCAGTaGCTTCTGGGGATCGAGTCT +
Preference number: 4 (lower is better)
Translates to: ENVSESTPSCEKTVQKCRGVLSQ*LLGIES
Trigger: AGACTCGATCCCCAGAAGCCACTGGGAAAGGACCCC...CCTGCATTTCTGAACAGTTTTCTCACAGGAAGGCGTGGACTCAGAGACATTTTC
51% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp GCAGGACTCTGTAACAAAGAATCCCAAAAGATTTACAGTCTGGTGCCAGCCATGGGGGTCCTTTCCCAGTaGCTTCTGGGGATCGAGTCT +
Preference number: 4 (lower is better)
Translates to: AGLCNKESQKIYSLVPAMGVLSQ*LLGIES
Trigger: AGACTCGATCCCCAGAAGCCACTGGGAAAGGACCCC...CATGGCTGGCACCAGACTGTAAATCTTTTGGGATTCTTTGTTACAGAGTCCTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp TCGGGCCAGGCTTTTCCAGAGAGGTCAGAAAATGTCTCTGAGTCCACGCCTTCCTGGTTACCACCATACTaGTATTTCACACCCCCAAAG +
Preference number: 4 (lower is better)
Translates to: SGQAFPERSENVSESTPSWLPPY*YFTPPK
Trigger: CTTTGGGGGTGTGAAATACCAGTATGGTGGTAACCA...GGAAGGCGTGGACTCAGAGACATTTTCTGACCTCTCTGGAAAAGCCTGGCCCGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp AAACGAGATTGTTCTTTGGTCCCCAGGGACCTGTCTCTGAACTCGCAATCTAGCTCCTCGGACTTCTTCTaGCTGGTGAAGTTTCCCCTG +
Preference number: 4 (lower is better)
Translates to: KRDCSLVPRDLSLNSQSSSSDFF*LVKFPL
Trigger: CAGGGGAAACTTCACCAGCCAGAAGAAGTCCGAGGA...GCTAGATTGCGAGTTCAGAGACAGGTCCCTGGGGACCAAAGAACAATCTCGTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp AACCAGTTAACGGGTTTCGGGCCAGGCTTTTCCAGAGAGGTCAGAAAATGTCTCTCCTCGGACTTCTTCTaGCTGGTGAAGTTTCCCCTG +
Preference number: 4 (lower is better)
Translates to: NQLTGFGPGFSREVRKCLSSDFF*LVKFPL
Trigger: CAGGGGAAACTTCACCAGCCAGAAGAAGTCCGAGGA...GAGACATTTTCTGACCTCTCTGGAAAAGCCTGGCCCGAAACCCGTTAACTGGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp AATCCCAAAAGATTTACAGTCTGGTGCCAGCCATGCACCCACCAAGTGGTTAGGTCCTCGGACTTCTTCTaGCTGGTGAAGTTTCCCCTG +
Preference number: 4 (lower is better)
Translates to: NPKRFTVWCQPCTHQVVRSSDFF*LVKFPL
Trigger: CAGGGGAAACTTCACCAGCCAGAAGAAGTCCGAGGA...CCTAACCACTTGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTTTGGGATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp AAACATGGTTCTCTAATGCTACTCACTGTCCTGACCTGTACCAATATGGACCAAGGAGCAGGTGAAAGGTaGCCCCCAAGGCCCAACCAG +
Preference number: 4 (lower is better)
Translates to: KHGSLMLLTVLTCTNMDQGAGER*PPRPNQ
Trigger: CTGGTTGGGCCTTGGGGGCCACCTTTCACCTGCTCC...TTGGTCCATATTGGTACAGGTCAGGACAGTGAGTAGCATTAGAGAACCATGTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
CDS-3UTR TCA 90 bp CAAAGAATCCCAAAAGATTTACAGTCTGGTGCCAGCCATGCACCCACCAAGTGGGCACCCTGTTTGGGCTaGTCCACAAAAGCAGAAAGT +
Preference number: 4 (lower is better)
Translates to: QRIPKDLQSGASHAPTKWAPCLG*STKAES
Trigger: ACTTTCTGCTTTTGTGGATCAGCCCAAACAGGGTGC...CCACTTGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTTTGGGATTCTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR TCA 90 bp CTGTGGAACAATACACACTTTATAGCTAGGGCCCCTGTGTCTGAGGTGTCAGAGGCACCCTGTTTGGGCTaGTCCACAAAAGCAGAAAGT +
Preference number: 4 (lower is better)
Translates to: LWNNTHFIARAPVSEVSEAPCLG*STKAES
Trigger: ACTTTCTGCTTTTGTGGATCAGCCCAAACAGGGTGC...CTCTGACACCTCAGACACAGGGGCCCTAGCTATAAAGTGTGTATTGTTCCACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
CDS-3UTR TCA 90 bp AATAAAAGATGGCAGCCGCTGGAAAATGATGATGGCTACAACCTCTCAGGACAAACTGGGGTAGAAACGTaGTTTGGGTGGAGGCACCCC +
Preference number: 4 (lower is better)
Translates to: NKRWQPLENDDGYNLSGQTGVET*FGWRHP
Trigger: GGGGTGCCTCCACCCAAATCACGTTTCTACCCCAGT...TTGTCCTGAGAGGTTGTAGCCATCATCATTTTCCAGCGGCTGCCATCTTTTATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
CDS-3UTR TCA 90 bp AACAATACACACTTTATAGCTAGGGCCCCTGTGTCTGAGGTGTCAGAGACCAGCACTTCTTCTGGCTGGTaGAGTTTCCCCTGTACTACC +
Preference number: 4 (lower is better)
Translates to: NNTHFIARAPVSEVSETSTSSGW*SFPCTT
Trigger: GGTAGTACAGGGGAAACTTCACCAGCCAGAAGAAGT...GCTGGTCTCTGACACCTCAGACACAGGGGCCCTAGCTATAAAGTGTGTATTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
CDS-3UTR TCA 90 bp CCAGTTAACGGGTTTCGGGCCAGGCTTTTCCAGAGAGGTCAGAAAATGTCTCTGTGTTCACTTTCTTTGTaGGCTGTAAGAGGGTGCCGT +
Preference number: 4 (lower is better)
Translates to: PVNGFRARLFQRGQKMSLCSLSL*AVRGCR
Trigger: ACGGCACCCTCTTACAGCTCACAAAGAAAGTGAACA...CAGAGACATTTTCTGACCTCTCTGGAAAAGCCTGGCCCGAAACCCGTTAACTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR TCA 90 bp CAGTCTGGTGCCAGCCATGCACCCACCAAGTGGTTAGGAGCTATTCACATTAGATGTTCACTTTCTTTGTaGGCTGTAAGAGGGTGCCGT +
Preference number: 4 (lower is better)
Translates to: QSGASHAPTKWLGAIHIRCSLSL*AVRGCR
Trigger: ACGGCACCCTCTTACAGCTCACAAAGAAAGTGAACA...TCTAATGTGAATAGCTCCTAACCACTTGGTGGGTGCATGGCTGGCACCAGACTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR TCA 90 bp CAGGTCCTCCTTGTGTGGCTGAGTGCTTCATTATTTGGGGTTTTGAAGTGTGTGCTGAGGCTTTGTTGCTaGAGCAGTGCTGCTCACACT +
Preference number: 4 (lower is better)
Translates to: QVLLVWLSASLFGVLKCVLRLCC*SSAAHT
Trigger: AGTGTGAGCAGCACTGCTTCAGCAACAAAGCCTCAG...CACACACTTCAAAACCCCAAATAATGAAGCACTCAGCCACACAAGGAGGACCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072061.12
CDS-3UTR CCA 90 bp AAAAGATTTACAGTCTGGTGCCAGCCATGCACCCACCAAGTGGTTAGGAGCTATTTTCCCAGTGGCTTCTaGGGATCGAGTCTTTGGCCA +
Preference number: 4 (lower is better)
Translates to: KRFTVWCQPCTHQVVRSYFPSGF*GSSLWP
Trigger: TGGCCAAAGACTCGATCCCCAGAAGCCACTGGGAAA...ATAGCTCCTAACCACTTGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp CAGAGAGGTCAGAAAATGTCTCTGAGTCCACGCCTTCCTGTGAGAAAACTGTTCTTTCCCAGTGGCTTCTaGGGATCGAGTCTTTGGCCA +
Preference number: 4 (lower is better)
Translates to: QRGQKMSLSPRLPVRKLFFPSGF*GSSLWP
Trigger: TGGCCAAAGACTCGATCCCCAGAAGCCACTGGGAAA...GAACAGTTTTCTCACAGGAAGGCGTGGACTCAGAGACATTTTCTGACCTCTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp GTCCCCAGGGACCTGTCTCTGAACTCGCAATCTAGCATGGAGTTCCAAACCTTTCCCATCTCCCCTTCTTaGTTACCACCATACTGGTAT +
Preference number: 4 (lower is better)
Translates to: VPRDLSLNSQSSMEFQTFPISPS*LPPYWY
Trigger: ATACCAGTATGGTGGTAACCAAGAAGGGGAGATGGG...AAAGGTTTGGAACTCCATGCTAGATTGCGAGTTCAGAGACAGGTCCCTGGGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp AAAAGATTTACAGTCTGGTGCCAGCCATGCACCCACCAAGTGGTTAGGAGCTATTCCTCGGACTTCTTCTaGCTGGTGAAGTTTCCCCTG +
Preference number: 4 (lower is better)
Translates to: KRFTVWCQPCTHQVVRSYSSDFF*LVKFPL
Trigger: CAGGGGAAACTTCACCAGCCAGAAGAAGTCCGAGGA...ATAGCTCCTAACCACTTGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
3UTR CAA 72 bp AATGTTCATTACGTCCAGAGTGGCAACAGCTATCCCTaGAGACCCGACGGTCTCCTTGCTTATACTCTAGGC +
Preference number: 4 (lower is better)
Translates to: NVHYVQSGNSYP*RPDGLLAYTLG
Trigger: GCCTAGAGTATAAGCAAGGAGACCGTCGGGTCTCAAGGGATAGCTGTTGCCACTCTGGACGTAATGAACATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
CDS-3UTR TCA 90 bp AAAAGATTTACAGTCTGGTGCCAGCCATGCACCCACCAAGTGGTTAGGAGCTATGCACCCTGTTTGGGCTaGTCCACAAAAGCAGAAAGT +
Preference number: 4 (lower is better)
Translates to: KRFTVWCQPCTHQVVRSYAPCLG*STKAES
Trigger: ACTTTCTGCTTTTGTGGATCAGCCCAAACAGGGTGC...ATAGCTCCTAACCACTTGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR TCA 90 bp GTCCCCAGGGACCTGTCTCTGAACTCGCAATCTAGCATGGAGTTCCAAACCTTTGGAAAGGTGAATTCTTaGAGATCTCCTCTACCTCCA +
Preference number: 4 (lower is better)
Translates to: VPRDLSLNSQSSMEFQTFGKVNS*RSPLPP
Trigger: TGGAGGTAGAGGAGATCTTCAAGAATTCACCTTTCC...AAAGGTTTGGAACTCCATGCTAGATTGCGAGTTCAGAGACAGGTCCCTGGGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR TCA 90 bp TACTACACAAACAAAGGAATCTCCAAGATGTTCTCCCTCACTTCACTTGGCAACACTGGGGTAGAAACGTaGTTTGGGTGGAGGCACCCC +
Preference number: 4 (lower is better)
Translates to: YYTNKGISKMFSLTSLGNTGVET*FGWRHP
Trigger: GGGGTGCCTCCACCCAAATCACGTTTCTACCCCAGT...GTTGCCAAGTGAAGTGAGGGAGAACATCTTGGAGATTCCTTTGTTTGTGTAGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
CDS-3UTR TCA 90 bp AAAGATTTACAGTCTGGTGCCAGCCATGCACCCACCAAGTGGTTAGGAGCTATTACTTCTTCTGGCTGGTaGAGTTTCCCCTGTACTACC +
Preference number: 4 (lower is better)
Translates to: KDLQSGASHAPTKWLGAITSSGW*SFPCTT
Trigger: GGTAGTACAGGGGAAACTTCACCAGCCAGAAGAAGT...AATAGCTCCTAACCACTTGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR TCA 90 bp AAAAGATTTACAGTCTGGTGCCAGCCATGCACCCACCAAGTGGTTAGGAGCTATACTTCTTCTGGCTGGTaGAGTTTCCCCTGTACTACC +
Preference number: 4 (lower is better)
Translates to: KRFTVWCQPCTHQVVRSYTSSGW*SFPCTT
Trigger: GGTAGTACAGGGGAAACTTCACCAGCCAGAAGAAGT...ATAGCTCCTAACCACTTGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR TCA 90 bp CAGAGAGGTCAGAAAATGTCTCTGAGTCCACGCCTTCCTGTGAGAAAACTGTTCACTTCTTCTGGCTGGTaGAGTTTCCCCTGTACTACC +
Preference number: 4 (lower is better)
Translates to: QRGQKMSLSPRLPVRKLFTSSGW*SFPCTT
Trigger: GGTAGTACAGGGGAAACTTCACCAGCCAGAAGAAGT...GAACAGTTTTCTCACAGGAAGGCGTGGACTCAGAGACATTTTCTGACCTCTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR GCA 90 bp TCTGGTGCCAGCCATGCACCCACCAAGTGGTTAGGAGCTATTCACATTAGATGTCAGAGTTGCCAGTCTTaGAGCTTTCAGTCCAAATCC +
Preference number: 4 (lower is better)
Translates to: SGASHAPTKWLGAIHIRCQSCQS*SFQSKS
Trigger: GGATTTGGACTGAAAGCTGCAAGACTGGCAACTCTG...ACATCTAATGTGAATAGCTCCTAACCACTTGGTGGGTGCATGGCTGGCACCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR GCA 90 bp AACCAGTTAACGGGTTTCGGGCCAGGCTTTTCCAGAGAGGTCAGAAAATGTCTCCAGAGTTGCCAGTCTTaGAGCTTTCAGTCCAAATCC +
Preference number: 4 (lower is better)
Translates to: NQLTGFGPGFSREVRKCLQSCQS*SFQSKS
Trigger: GGATTTGGACTGAAAGCTGCAAGACTGGCAACTCTG...GAGACATTTTCTGACCTCTCTGGAAAAGCCTGGCCCGAAACCCGTTAACTGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR GCA 90 bp AGGTCAGAAAATGTCTCTGAGTCCACGCCTTCCTGTGAGAAAACTGTTCAGAAACAGGGCTCCCAGAGTTaGCAGTCTTGCAGCTTTCAG +
Preference number: 4 (lower is better)
Translates to: RSENVSESTPSCEKTVQKQGSQS*QSCSFQ
Trigger: CTGAAAGCTGCAAGACTGGCAACTCTGGGAGCCCTG...TTTCTGAACAGTTTTCTCACAGGAAGGCGTGGACTCAGAGACATTTTCTGACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp AAAATGTCTCTGAGTCCACGCCTTCCTGTGAGAAAACTGTTCAGAAATGCAGGCTTTCCCAGTGGCTTCTaGGGATCGAGTCTTTGGCCA +
Preference number: 4 (lower is better)
Translates to: KMSLSPRLPVRKLFRNAGFPSGF*GSSLWP
Trigger: TGGCCAAAGACTCGATCCCCAGAAGCCACTGGGAAA...GCCTGCATTTCTGAACAGTTTTCTCACAGGAAGGCGTGGACTCAGAGACATTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp CCAGTAATAAAACAATACACGATCTCATCGCACGCACAGCTGCAGAGGCCTCAGCCCATCTCCCCTTCTTaGTTACCACCATACTGGTAT +
Preference number: 4 (lower is better)
Translates to: PVIKQYTISSHAQLQRPQPISPS*LPPYWY
Trigger: ATACCAGTATGGTGGTAACCAAGAAGGGGAGATGGG...CTGAGGCCTCTGCAGCTGTGCGTGCGATGAGATCGTGTATTGTTTTATTACTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
CDS-3UTR CCA 90 bp AACAATACACACTTTATAGCTAGGGCCCCTGTGTCTGAGGTGTCAGAGACCAGCCCCATCTCCCCTTCTTaGTTACCACCATACTGGTAT +
Preference number: 4 (lower is better)
Translates to: NNTHFIARAPVSEVSETSPISPS*LPPYWY
Trigger: ATACCAGTATGGTGGTAACCAAGAAGGGGAGATGGG...GCTGGTCTCTGACACCTCAGACACAGGGGCCCTAGCTATAAAGTGTGTATTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
CDS-3UTR TCA 90 bp AACAAAGAATCCCAAAAGATTTACAGTCTGGTGCCAGCCATGCACCCACCAAGTGCACCCTGTTTGGGCTaGTCCACAAAAGCAGAAAGT +
Preference number: 4 (lower is better)
Translates to: NKESQKIYSLVPAMHPPSAPCLG*STKAES
Trigger: ACTTTCTGCTTTTGTGGATCAGCCCAAACAGGGTGC...ACTTGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTTTGGGATTCTTTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR TCA 90 bp CTGTGGAACAATACACACTTTATAGCTAGGGCCCCTGTGTCTGAGGTGTCAGAGGGAAAGGTGAATTCTTaGAGATCTCCTCTACCTCCA +
Preference number: 4 (lower is better)
Translates to: LWNNTHFIARAPVSEVSEGKVNS*RSPLPP
Trigger: TGGAGGTAGAGGAGATCTTCAAGAATTCACCTTTCC...CTCTGACACCTCAGACACAGGGGCCCTAGCTATAAAGTGTGTATTGTTCCACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
CDS-3UTR TCA 90 bp GAAAATGTCTCTGAGTCCACGCCTTCCTGTGAGAAAACTGTTCAGAAATGCAGGACTTCTTCTGGCTGGTaGAGTTTCCCCTGTACTACC +
Preference number: 4 (lower is better)
Translates to: ENVSESTPSCEKTVQKCRTSSGW*SFPCTT
Trigger: GGTAGTACAGGGGAAACTTCACCAGCCAGAAGAAGT...CCTGCATTTCTGAACAGTTTTCTCACAGGAAGGCGTGGACTCAGAGACATTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR TCA 90 bp CAGGTCCTCCTTGTGTGGCTGAGTGCTTCATTATTTGGGGTTTTGAAGTGTGTGTGTTCACTTTCTTTGTaGGCTGTAAGAGGGTGCCGT +
Preference number: 4 (lower is better)
Translates to: QVLLVWLSASLFGVLKCVCSLSL*AVRGCR
Trigger: ACGGCACCCTCTTACAGCTCACAAAGAAAGTGAACA...CACACACTTCAAAACCCCAAATAATGAAGCACTCAGCCACACAAGGAGGACCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
CDS-3UTR GCA 90 bp CAGGTCCTCCTTGTGTGGCTGAGTGCTTCATTATTTGGGGTTTTGAAGTGTGTGCAGAGTTGCCAGTCTTaGAGCTTTCAGTCCAAATCC +
Preference number: 4 (lower is better)
Translates to: QVLLVWLSASLFGVLKCVQSCQS*SFQSKS
Trigger: GGATTTGGACTGAAAGCTGCAAGACTGGCAACTCTG...CACACACTTCAAAACCCCAAATAATGAAGCACTCAGCCACACAAGGAGGACCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
CDS-3UTR CCA 90 bp AATAAAAGATGGCAGCCGCTGGAAAATGATGATGGCTACAACCTCTCAGGACAATTTCCCAGTGGCTTCTaGGGATCGAGTCTTTGGCCA +
Preference number: 4 (lower is better)
Translates to: NKRWQPLENDDGYNLSGQFPSGF*GSSLWP
Trigger: TGGCCAAAGACTCGATCCCCAGAAGCCACTGGGAAA...TTGTCCTGAGAGGTTGTAGCCATCATCATTTTCCAGCGGCTGCCATCTTTTATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
CDS-3UTR CCA 90 bp CTATTCACATTAGATGTGCAAATCATTGAAGCCCAAATCACTAGGCTCAAGAGCGGGGTCCTTTCCCAGTaGCTTCTGGGGATCGAGTCT +
Preference number: 4 (lower is better)
Translates to: LFTLDVQIIEAQITRLKSGVLSQ*LLGIES
Trigger: AGACTCGATCCCCAGAAGCCACTGGGAAAGGACCCC...GCTCTTGAGCCTAGTGATTTGGGCTTCAATGATTTGCACATCTAATGTGAATAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp CTATTCACATTAGATGTGCAAATCATTGAAGCCCAAATCACTAGGCTCAAGAGCTCCAAGAGCAGAGCCTaGGCTTTCTGCTCAGGCAGC +
Preference number: 4 (lower is better)
Translates to: LFTLDVQIIEAQITRLKSSKSRA*AFCSGS
Trigger: GCTGCCTGAGCAGAAAGCCCAGGCTCTGCTCTTGGA...GCTCTTGAGCCTAGTGATTTGGGCTTCAATGATTTGCACATCTAATGTGAATAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp AATCCCAAAAGATTTACAGTCTGGTGCCAGCCATGCACCCACCAAGTGGTTAGGTGGTTACCACCATACTaGTATTTCACACCCCCAAAG +
Preference number: 4 (lower is better)
Translates to: NPKRFTVWCQPCTHQVVRWLPPY*YFTPPK
Trigger: CTTTGGGGGTGTGAAATACCAGTATGGTGGTAACCA...CCTAACCACTTGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTTTGGGATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp AACCAGTTAACGGGTTTCGGGCCAGGCTTTTCCAGAGAGGTCAGAAAATGTCTCTGGTTACCACCATACTaGTATTTCACACCCCCAAAG +
Preference number: 4 (lower is better)
Translates to: NQLTGFGPGFSREVRKCLWLPPY*YFTPPK
Trigger: CTTTGGGGGTGTGAAATACCAGTATGGTGGTAACCA...GAGACATTTTCTGACCTCTCTGGAAAAGCCTGGCCCGAAACCCGTTAACTGGTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp GCCCAAATCACTAGGCTCAAGAGCAAGACTCATCTAAAAACCCCTCCCTCCTTACCCATCTCCCCTTCTTaGTTACCACCATACTGGTAT +
Preference number: 4 (lower is better)
Translates to: AQITRLKSKTHLKTPPSLPISPS*LPPYWY
Trigger: ATACCAGTATGGTGGTAACCAAGAAGGGGAGATGGG...TAAGGAGGGAGGGGTTTTTAGATGAGTCTTGCTCTTGAGCCTAGTGATTTGGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR TCA 90 bp ACAAAGAATCCCAAAAGATTTACAGTCTGGTGCCAGCCATGCACCCACCAAGTGGGAAAGGTGAATTCTTaGAGATCTCCTCTACCTCCA +
Preference number: 4 (lower is better)
Translates to: TKNPKRFTVWCQPCTHQVGKVNS*RSPLPP
Trigger: TGGAGGTAGAGGAGATCTTCAAGAATTCACCTTTCC...CACTTGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTTTGGGATTCTTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR TCA 90 bp AGGTCAGAAAATGTCTCTGAGTCCACGCCTTCCTGTGAGAAAACTGTTCAGAAAACTTCTTCTGGCTGGTaGAGTTTCCCCTGTACTACC +
Preference number: 4 (lower is better)
Translates to: RSENVSESTPSCEKTVQKTSSGW*SFPCTT
Trigger: GGTAGTACAGGGGAAACTTCACCAGCCAGAAGAAGT...TTTCTGAACAGTTTTCTCACAGGAAGGCGTGGACTCAGAGACATTTTCTGACCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR TCA 90 bp TGTAACAAAGAATCCCAAAAGATTTACAGTCTGGTGCCAGCCATGCACCCACCATGTTCACTTTCTTTGTaGGCTGTAAGAGGGTGCCGT +
Preference number: 4 (lower is better)
Translates to: CNKESQKIYSLVPAMHPPCSLSL*AVRGCR
Trigger: ACGGCACCCTCTTACAGCTCACAAAGAAAGTGAACA...TGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTTTGGGATTCTTTGTTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR TCA 90 bp GTAACAAAGAATCCCAAAAGATTTACAGTCTGGTGCCAGCCATGCACCCACCAATGTTCACTTTCTTTGTaGGCTGTAAGAGGGTGCCGT +
Preference number: 4 (lower is better)
Translates to: VTKNPKRFTVWCQPCTHQCSLSL*AVRGCR
Trigger: ACGGCACCCTCTTACAGCTCACAAAGAAAGTGAACA...TTGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTTTGGGATTCTTTGTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR GCA 90 bp TGTAACAAAGAATCCCAAAAGATTTACAGTCTGGTGCCAGCCATGCACCCACCACAGAGTTGCCAGTCTTaGAGCTTTCAGTCCAAATCC +
Preference number: 4 (lower is better)
Translates to: CNKESQKIYSLVPAMHPPQSCQS*SFQSKS
Trigger: GGATTTGGACTGAAAGCTGCAAGACTGGCAACTCTG...TGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTTTGGGATTCTTTGTTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR GCA 90 bp CTATTCACATTAGATGTGCAAATCATTGAAGCCCAAATCACTAGGCTCAAGAGCCAGGGCTCCCAGAGTTaGCAGTCTTGCAGCTTTCAG +
Preference number: 4 (lower is better)
Translates to: LFTLDVQIIEAQITRLKSQGSQS*QSCSFQ
Trigger: CTGAAAGCTGCAAGACTGGCAACTCTGGGAGCCCTG...GCTCTTGAGCCTAGTGATTTGGGCTTCAATGATTTGCACATCTAATGTGAATAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp AAACGAGATTGTTCTTTGGTCCCCAGGGACCTGTCTCTGAACTCGCAATCTAGCAGGGTTTTCTCAAACTaGGGTAGAAACGTGATTTGG +
Preference number: 4 (lower is better)
Translates to: KRDCSLVPRDLSLNSQSSRVFSN*GRNVIW
Trigger: CCAAATCACGTTTCTACCCCAGTTTGAGAAAACCCT...GCTAGATTGCGAGTTCAGAGACAGGTCCCTGGGGACCAAAGAACAATCTCGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp GCCCAAATCACTAGGCTCAAGAGCAAGACTCATCTAAAAACCCCTCCCTCCTTATGGTTACCACCATACTaGTATTTCACACCCCCAAAG +
Preference number: 4 (lower is better)
Translates to: AQITRLKSKTHLKTPPSLWLPPY*YFTPPK
Trigger: CTTTGGGGGTGTGAAATACCAGTATGGTGGTAACCA...TAAGGAGGGAGGGGTTTTTAGATGAGTCTTGCTCTTGAGCCTAGTGATTTGGGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp TACTACACAAACAAAGGAATCTCCAAGATGTTCTCCCTCACTTCACTTGGCAACTCCTCGGACTTCTTCTaGCTGGTGAAGTTTCCCCTG +
Preference number: 4 (lower is better)
Translates to: YYTNKGISKMFSLTSLGNSSDFF*LVKFPL
Trigger: CAGGGGAAACTTCACCAGCCAGAAGAAGTCCGAGGA...GTTGCCAAGTGAAGTGAGGGAGAACATCTTGGAGATTCCTTTGTTTGTGTAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
CDS-3UTR TCA 90 bp TGTAACAAAGAATCCCAAAAGATTTACAGTCTGGTGCCAGCCATGCACCCACCAGGAAAGGTGAATTCTTaGAGATCTCCTCTACCTCCA +
Preference number: 4 (lower is better)
Translates to: CNKESQKIYSLVPAMHPPGKVNS*RSPLPP
Trigger: TGGAGGTAGAGGAGATCTTCAAGAATTCACCTTTCC...TGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTTTGGGATTCTTTGTTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR TCA 90 bp AGGTCAGAAAATGTCTCTGAGTCCACGCCTTCCTGTGAGAAAACTGTTCAGAAATGTTCACTTTCTTTGTaGGCTGTAAGAGGGTGCCGT +
Preference number: 4 (lower is better)
Translates to: RSENVSESTPSCEKTVQKCSLSL*AVRGCR
Trigger: ACGGCACCCTCTTACAGCTCACAAAGAAAGTGAACA...TTTCTGAACAGTTTTCTCACAGGAAGGCGTGGACTCAGAGACATTTTCTGACCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp CAGGTCCTCCTTGTGTGGCTGAGTGCTTCATTATTTGGGGTTTTGAAGTGTGTGAGGGTTTTCTCAAACTaGGGTAGAAACGTGATTTGG +
Preference number: 4 (lower is better)
Translates to: QVLLVWLSASLFGVLKCVRVFSN*GRNVIW
Trigger: CCAAATCACGTTTCTACCCCAGTTTGAGAAAACCCT...CACACACTTCAAAACCCCAAATAATGAAGCACTCAGCCACACAAGGAGGACCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
CDS-3UTR CCA 90 bp GTAACAAAGAATCCCAAAAGATTTACAGTCTGGTGCCAGCCATGCACCCACCAATGGTTACCACCATACTaGTATTTCACACCCCCAAAG +
Preference number: 4 (lower is better)
Translates to: VTKNPKRFTVWCQPCTHQWLPPY*YFTPPK
Trigger: CTTTGGGGGTGTGAAATACCAGTATGGTGGTAACCA...TTGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTTTGGGATTCTTTGTTAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp TGGCTGAGTGCTTCATTATTTGGGGTTTTGAAGTGTGTGTGTACTGCAAAGTGCCCCATCTCCCCTTCTTaGTTACCACCATACTGGTAT +
Preference number: 4 (lower is better)
Translates to: WLSASLFGVLKCVCTAKCPISPS*LPPYWY
Trigger: ATACCAGTATGGTGGTAACCAAGAAGGGGAGATGGG...GCACTTTGCAGTACACACACACTTCAAAACCCCAAATAATGAAGCACTCAGCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
CDS-3UTR CCA 90 bp AGGTCAGAAAATGTCTCTGAGTCCACGCCTTCCTGTGAGAAAACTGTTCAGAAACCCATCTCCCCTTCTTaGTTACCACCATACTGGTAT +
Preference number: 4 (lower is better)
Translates to: RSENVSESTPSCEKTVQKPISPS*LPPYWY
Trigger: ATACCAGTATGGTGGTAACCAAGAAGGGGAGATGGG...TTTCTGAACAGTTTTCTCACAGGAAGGCGTGGACTCAGAGACATTTTCTGACCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp GAAAATGTCTCTGAGTCCACGCCTTCCTGTGAGAAAACTGTTCAGAAATGCAGGAGGGTTTTCTCAAACTaGGGTAGAAACGTGATTTGG +
Preference number: 4 (lower is better)
Translates to: ENVSESTPSCEKTVQKCRRVFSN*GRNVIW
Trigger: CCAAATCACGTTTCTACCCCAGTTTGAGAAAACCCT...CCTGCATTTCTGAACAGTTTTCTCACAGGAAGGCGTGGACTCAGAGACATTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CCA 90 bp TGTAACAAAGAATCCCAAAAGATTTACAGTCTGGTGCCAGCCATGCACCCACCAAGGGTTTTCTCAAACTaGGGTAGAAACGTGATTTGG +
Preference number: 4 (lower is better)
Translates to: CNKESQKIYSLVPAMHPPRVFSN*GRNVIW
Trigger: CCAAATCACGTTTCTACCCCAGTTTGAGAAAACCCT...TGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTTTGGGATTCTTTGTTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
3UTR CAA 72 bp AGGAAAGCAGGACTATACAAGCATAGTGCTAGCACATaGTGCTTAACATTCAAGAAGTCCTGGGTTCGATTC +
Preference number: 4 (lower is better)
Translates to: RKAGLYKHSAST*CLTFKKSWVRF
Trigger: GAATCGAACCCAGGACTTCTTGAATGTTAAGCACAATGTGCTAGCACTATGCTTGTATAGTCCTGCTTTCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
CDS-3UTR CCA 90 bp CATGGTTCTCTAATGCTACTCACTGTCCTGACCTGTACCAATATGGACCAAAATAGGGTTTTCTCAAACTaGGGTAGAAACGTGATTTGG +
Preference number: 4 (lower is better)
Translates to: HGSLMLLTVLTCTNMDQNRVFSN*GRNVIW
Trigger: CCAAATCACGTTTCTACCCCAGTTTGAGAAAACCCT...ATTTTGGTCCATATTGGTACAGGTCAGGACAGTGAGTAGCATTAGAGAACCATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
CDS-3UTR CCA 90 bp TACTACACAAACAAAGGAATCTCCAAGATGTTCTCCCTCACTTCACTTGGCAACAGGGTTTTCTCAAACTaGGGTAGAAACGTGATTTGG +
Preference number: 4 (lower is better)
Translates to: YYTNKGISKMFSLTSLGNRVFSN*GRNVIW
Trigger: CCAAATCACGTTTCTACCCCAGTTTGAGAAAACCCT...GTTGCCAAGTGAAGTGAGGGAGAACATCTTGGAGATTCCTTTGTTTGTGTAGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
CDS GCA 90 bp CAGAGCCTGGGCTTTCTGCTCAGGCAGCAAACGGAGTCCGGCCGTTaGTTTCAGAACCACCGGGGTCCTTTCCCAGTGGCTTCTGGGGAT +
Preference number: 5 (lower is better)
Translates to: QSLGFLLRQQTESGR*FQNHRGPFPVASGD
Trigger: ATCCCCAGAAGCCACTGGGAAAGGACCCCGGTGGTTCTGAAAGCAACGGCCGGACTCCGTTTGCTGCCTGAGCAGAAAGCCCAGGCTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CAA 90 bp CGGGCCAGGCTTTTCCAGAGAGGTCAGAAAATGTCTCTGAGTCCACGCCTTCCTCTGGGGATCGAGTCTTaGGCCACCTCCAAGAGCTCC +
Preference number: 5 (lower is better)
Translates to: RARLFQRGQKMSLSPRLPLGIES*ATSKSS
Trigger: GGAGCTCTTGGAGGTGGCCAAAGACTCGATCCCCAG...AGGAAGGCGTGGACTCAGAGACATTTTCTGACCTCTCTGGAAAAGCCTGGCCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CAA 90 bp TCGGGCCAGGCTTTTCCAGAGAGGTCAGAAAATGTCTCTGAGTCCACGCCTTCCCCAGGGCTCCCAGAGTaGCCAGTCTTGCAGCTTTCA +
Preference number: 5 (lower is better)
Translates to: SGQAFPERSENVSESTPSPGLPE*PVLQLS
Trigger: TGAAAGCTGCAAGACTGGCAACTCTGGGAGCCCTGG...GGAAGGCGTGGACTCAGAGACATTTTCTGACCTCTCTGGAAAAGCCTGGCCCGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CAA 90 bp GGGTTTCGGGCCAGGCTTTTCCAGAGAGGTCAGAAAATGTCTCTGAGTCCACGCGTCCATCAGTCCCTTTaGCTTCCAGGGCTCCCAGAG +
Preference number: 5 (lower is better)
Translates to: GFRARLFQRGQKMSLSPRVHQSL*LPGLPE
Trigger: CTCTGGGAGCCCTGGAAGCAAAAGGGACTGATGGAC...GCGTGGACTCAGAGACATTTTCTGACCTCTCTGGAAAAGCCTGGCCCGAAACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CAA 90 bp CCCTCCCTCCTTATAAAACCAGTTAACGGGTTTCGGGCCAGGCTTTTCCAGAGACTGGGGATCGAGTCTTaGGCCACCTCCAAGAGCTCC +
Preference number: 5 (lower is better)
Translates to: PSLLIKPVNGFRARLFQRLGIES*ATSKSS
Trigger: GGAGCTCTTGGAGGTGGCCAAAGACTCGATCCCCAG...TCTCTGGAAAAGCCTGGCCCGAAACCCGTTAACTGGTTTTATAAGGAGGGAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS TCA 90 bp GGACCCATCCATGATGCTAACGCTGCCATCTGGGACCAGGAAAGGTaGATTCTTGAAGATCTCCTCTACCTCCAAGAGCAGAGCCTGGGC +
Preference number: 5 (lower is better)
Translates to: GPIHDANAAIWDQER*ILEDLLYLQEQSLG
Trigger: GCCCAGGCTCTGCTCTTGGAGGTAGAGGAGATCTTCAAGAATTCACCTTTCCTGGTCCCAGATGGCAGCGTTAGCATCATGGATGGGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CAA 90 bp CGGGTTTCGGGCCAGGCTTTTCCAGAGAGGTCAGAAAATGTCTCTGAGTCCACGGCCCATCTCCCCTTCTaGGTTACCACCATACTGGTA +
Preference number: 5 (lower is better)
Translates to: RVSGQAFPERSENVSESTAHLPF*VTTILV
Trigger: TACCAGTATGGTGGTAACCAAGAAGGGGAGATGGGC...CGTGGACTCAGAGACATTTTCTGACCTCTCTGGAAAAGCCTGGCCCGAAACCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CAA 90 bp CGGGCCAGGCTTTTCCAGAGAGGTCAGAAAATGTCTCTGAGTCCACGCCTTCCTGCCCATCTCCCCTTCTaGGTTACCACCATACTGGTA +
Preference number: 5 (lower is better)
Translates to: RARLFQRGQKMSLSPRLPAHLPF*VTTILV
Trigger: TACCAGTATGGTGGTAACCAAGAAGGGGAGATGGGC...AGGAAGGCGTGGACTCAGAGACATTTTCTGACCTCTCTGGAAAAGCCTGGCCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CAA 90 bp GCCCAAATCACTAGGCTCAAGAGCAAGACTCATCTAAAAACCCCTCCCTCCTTACTGGGGATCGAGTCTTaGGCCACCTCCAAGAGCTCC +
Preference number: 5 (lower is better)
Translates to: AQITRLKSKTHLKTPPSLLGIES*ATSKSS
Trigger: GGAGCTCTTGGAGGTGGCCAAAGACTCGATCCCCAG...TAAGGAGGGAGGGGTTTTTAGATGAGTCTTGCTCTTGAGCCTAGTGATTTGGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CAA 90 bp TCTGGTGCCAGCCATGCACCCACCAAGTGGTTAGGAGCTATTCACATTAGATGTCCAGGGCTCCCAGAGTaGCCAGTCTTGCAGCTTTCA +
Preference number: 5 (lower is better)
Translates to: SGASHAPTKWLGAIHIRCPGLPE*PVLQLS
Trigger: TGAAAGCTGCAAGACTGGCAACTCTGGGAGCCCTGG...ACATCTAATGTGAATAGCTCCTAACCACTTGGTGGGTGCATGGCTGGCACCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CAA 90 bp GCCCAAATCACTAGGCTCAAGAGCAAGACTCATCTAAAAACCCCTCCCTCCTTAGTCCATCAGTCCCTTTaGCTTCCAGGGCTCCCAGAG +
Preference number: 5 (lower is better)
Translates to: AQITRLKSKTHLKTPPSLVHQSL*LPGLPE
Trigger: CTCTGGGAGCCCTGGAAGCAAAAGGGACTGATGGAC...TAAGGAGGGAGGGGTTTTTAGATGAGTCTTGCTCTTGAGCCTAGTGATTTGGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CAA 90 bp AAAAGATTTACAGTCTGGTGCCAGCCATGCACCCACCAAGTGGTTAGGAGCTATGTCCATCAGTCCCTTTaGCTTCCAGGGCTCCCAGAG +
Preference number: 5 (lower is better)
Translates to: KRFTVWCQPCTHQVVRSYVHQSL*LPGLPE
Trigger: CTCTGGGAGCCCTGGAAGCAAAAGGGACTGATGGAC...ATAGCTCCTAACCACTTGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CAA 90 bp AACAATACACACTTTATAGCTAGGGCCCCTGTGTCTGAGGTGTCAGAGACCAGCTGTGGACCTGAGGCTTaGTTGCTGAAGCAGTGCTGC +
Preference number: 5 (lower is better)
Translates to: NNTHFIARAPVSEVSETSCGPEA*LLKQCC
Trigger: GCAGCACTGCTTCAGCAACAAAGCCTCAGGTCCACA...GCTGGTCTCTGACACCTCAGACACAGGGGCCCTAGCTATAAAGTGTGTATTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072061.12
CDS CCA 90 bp GTAGTAGTAAGAGAAAGCGTAGAAGGCGCTTCCTCGGACTTCTTCTaGCTGGTGAAGTTTCCCCTGTACTACCCTCAGCACTTCCGCATA +
Preference number: 5 (lower is better)
Translates to: VVVRESVEGASSDFF*LVKFPLYYPQHFRI
Trigger: TATGCGGAAGTGCTGAGGGTAGTACAGGGGAAACTTCACCAGCCAGAAGAAGTCCGAGGAAGCGCCTTCTACGCTTTCTCTTACTACTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CAA 90 bp CGGGCCAGGCTTTTCCAGAGAGGTCAGAAAATGTCTCTGAGTCCACGCCTTCCTAGGAAAGGTGAATTCTaGAAGATCTCCTCTACCTCC +
Preference number: 5 (lower is better)
Translates to: RARLFQRGQKMSLSPRLPRKGEF*KISSTS
Trigger: GGAGGTAGAGGAGATCTTCAAGAATTCACCTTTCCT...AGGAAGGCGTGGACTCAGAGACATTTTCTGACCTCTCTGGAAAAGCCTGGCCCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CAA 90 bp GTCCCCAGGGACCTGTCTCTGAACTCGCAATCTAGCATGGAGTTCCAAACCTTTCCAGAGTTGCCAGTCTaGCAGCTTTCAGTCCAAATC +
Preference number: 5 (lower is better)
Translates to: VPRDLSLNSQSSMEFQTFPELPV*QLSVQI
Trigger: GATTTGGACTGAAAGCTGCAAGACTGGCAACTCTGG...AAAGGTTTGGAACTCCATGCTAGATTGCGAGTTCAGAGACAGGTCCCTGGGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CAA 90 bp GAAAATGTCTCTGAGTCCACGCCTTCCTGTGAGAAAACTGTTCAGAAATGCAGGCCAGGGCTCCCAGAGTaGCCAGTCTTGCAGCTTTCA +
Preference number: 5 (lower is better)
Translates to: ENVSESTPSCEKTVQKCRPGLPE*PVLQLS
Trigger: TGAAAGCTGCAAGACTGGCAACTCTGGGAGCCCTGG...CCTGCATTTCTGAACAGTTTTCTCACAGGAAGGCGTGGACTCAGAGACATTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CAA 90 bp GCAGGACTCTGTAACAAAGAATCCCAAAAGATTTACAGTCTGGTGCCAGCCATGCCAGGGCTCCCAGAGTaGCCAGTCTTGCAGCTTTCA +
Preference number: 5 (lower is better)
Translates to: AGLCNKESQKIYSLVPAMPGLPE*PVLQLS
Trigger: TGAAAGCTGCAAGACTGGCAACTCTGGGAGCCCTGG...CATGGCTGGCACCAGACTGTAAATCTTTTGGGATTCTTTGTTACAGAGTCCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CAA 90 bp GTAACAAAGAATCCCAAAAGATTTACAGTCTGGTGCCAGCCATGCACCCACCAAGTCCATCAGTCCCTTTaGCTTCCAGGGCTCCCAGAG +
Preference number: 5 (lower is better)
Translates to: VTKNPKRFTVWCQPCTHQVHQSL*LPGLPE
Trigger: CTCTGGGAGCCCTGGAAGCAAAAGGGACTGATGGAC...TTGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTTTGGGATTCTTTGTTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CAA 90 bp AACAATACACACTTTATAGCTAGGGCCCCTGTGTCTGAGGTGTCAGAGACCAGCGCCCATCTCCCCTTCTaGGTTACCACCATACTGGTA +
Preference number: 5 (lower is better)
Translates to: NNTHFIARAPVSEVSETSAHLPF*VTTILV
Trigger: TACCAGTATGGTGGTAACCAAGAAGGGGAGATGGGC...GCTGGTCTCTGACACCTCAGACACAGGGGCCCTAGCTATAAAGTGTGTATTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
CDS-3UTR CAA 90 bp CCAGTAATAAAACAATACACGATCTCATCGCACGCACAGCTGCAGAGGCCTCAGCCAGAGTTGCCAGTCTaGCAGCTTTCAGTCCAAATC +
Preference number: 5 (lower is better)
Translates to: PVIKQYTISSHAQLQRPQPELPV*QLSVQI
Trigger: GATTTGGACTGAAAGCTGCAAGACTGGCAACTCTGG...CTGAGGCCTCTGCAGCTGTGCGTGCGATGAGATCGTGTATTGTTTTATTACTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
CDS-3UTR CAA 90 bp TGGCTGAGTGCTTCATTATTTGGGGTTTTGAAGTGTGTGTGTACTGCAAAGTGCCCAGGGCTCCCAGAGTaGCCAGTCTTGCAGCTTTCA +
Preference number: 5 (lower is better)
Translates to: WLSASLFGVLKCVCTAKCPGLPE*PVLQLS
Trigger: TGAAAGCTGCAAGACTGGCAACTCTGGGAGCCCTGG...GCACTTTGCAGTACACACACACTTCAAAACCCCAAATAATGAAGCACTCAGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
CDS-3UTR CAA 90 bp AGGTCAGAAAATGTCTCTGAGTCCACGCCTTCCTGTGAGAAAACTGTTCAGAAAGTCCATCAGTCCCTTTaGCTTCCAGGGCTCCCAGAG +
Preference number: 5 (lower is better)
Translates to: RSENVSESTPSCEKTVQKVHQSL*LPGLPE
Trigger: CTCTGGGAGCCCTGGAAGCAAAAGGGACTGATGGAC...TTTCTGAACAGTTTTCTCACAGGAAGGCGTGGACTCAGAGACATTTTCTGACCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CAA 90 bp CCCTCCCTCCTTATAAAACCAGTTAACGGGTTTCGGGCCAGGCTTTTCCAGAGACTGCTTCCAACCATCTaGGTAAACAGGCACTTCGAA +
Preference number: 5 (lower is better)
Translates to: PSLLIKPVNGFRARLFQRLLPTI*VNRHFE
Trigger: TTCGAAGTGCCTGTTTACCAAGATGGTTGGAAGCAG...TCTCTGGAAAAGCCTGGCCCGAAACCCGTTAACTGGTTTTATAAGGAGGGAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CAA 90 bp CTATTCACATTAGATGTGCAAATCATTGAAGCCCAAATCACTAGGCTCAAGAGCCTGGGGATCGAGTCTTaGGCCACCTCCAAGAGCTCC +
Preference number: 5 (lower is better)
Translates to: LFTLDVQIIEAQITRLKSLGIES*ATSKSS
Trigger: GGAGCTCTTGGAGGTGGCCAAAGACTCGATCCCCAG...GCTCTTGAGCCTAGTGATTTGGGCTTCAATGATTTGCACATCTAATGTGAATAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CAA 90 bp CCCTCCCTCCTTATAAAACCAGTTAACGGGTTTCGGGCCAGGCTTTTCCAGAGAAGGAAAGGTGAATTCTaGAAGATCTCCTCTACCTCC +
Preference number: 5 (lower is better)
Translates to: PSLLIKPVNGFRARLFQRRKGEF*KISSTS
Trigger: GGAGGTAGAGGAGATCTTCAAGAATTCACCTTTCCT...TCTCTGGAAAAGCCTGGCCCGAAACCCGTTAACTGGTTTTATAAGGAGGGAGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CAA 90 bp AACCAGTTAACGGGTTTCGGGCCAGGCTTTTCCAGAGAGGTCAGAAAATGTCTCGTAGCCCCTAGGTGTTaGTTCCAGGGTTTTCTCAAA +
Preference number: 5 (lower is better)
Translates to: NQLTGFGPGFSREVRKCLVAPRC*FQGFLK
Trigger: TTTGAGAAAACCCTGGAACAAACACCTAGGGGCTAC...GAGACATTTTCTGACCTCTCTGGAAAAGCCTGGCCCGAAACCCGTTAACTGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CAA 90 bp CAGAGAGGTCAGAAAATGTCTCTGAGTCCACGCCTTCCTGTGAGAAAACTGTTCCCAGAGTTGCCAGTCTaGCAGCTTTCAGTCCAAATC +
Preference number: 5 (lower is better)
Translates to: QRGQKMSLSPRLPVRKLFPELPV*QLSVQI
Trigger: GATTTGGACTGAAAGCTGCAAGACTGGCAACTCTGG...GAACAGTTTTCTCACAGGAAGGCGTGGACTCAGAGACATTTTCTGACCTCTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CAA 90 bp CCAGTAATAAAACAATACACGATCTCATCGCACGCACAGCTGCAGAGGCCTCAGCTGCTTCCAACCATCTaGGTAAACAGGCACTTCGAA +
Preference number: 5 (lower is better)
Translates to: PVIKQYTISSHAQLQRPQLLPTI*VNRHFE
Trigger: TTCGAAGTGCCTGTTTACCAAGATGGTTGGAAGCAG...CTGAGGCCTCTGCAGCTGTGCGTGCGATGAGATCGTGTATTGTTTTATTACTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
CDS-3UTR CAA 90 bp AACAAAGAATCCCAAAAGATTTACAGTCTGGTGCCAGCCATGCACCCACCAAGTGCCCATCTCCCCTTCTaGGTTACCACCATACTGGTA +
Preference number: 5 (lower is better)
Translates to: NKESQKIYSLVPAMHPPSAHLPF*VTTILV
Trigger: TACCAGTATGGTGGTAACCAAGAAGGGGAGATGGGC...ACTTGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTTTGGGATTCTTTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS GCA 90 bp AAACGTATGTCCATCAGTCCCTTTTGCTTCCAGGGCTCCCAGAGTTaGCAGTCTTGCAGCTTTCAGTCCAAATCCCAAGTAACTATGTGT +
Preference number: 5 (lower is better)
Translates to: KRMSISPFCFQGSQS*QSCSFQSKSQVTMC
Trigger: ACACATAGTTACTTGGGATTTGGACTGAAAGCTGCAAGACTGGCAACTCTGGGAGCCCTGGAAGCAAAAGGGACTGATGGACATACGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CAA 90 bp AGTAGTATATATAATACACACACAGCATCCACCATGTATGTACCAGACCACATCCTGGGGATCGAGTCTTaGGCCACCTCCAAGAGCTCC +
Preference number: 5 (lower is better)
Translates to: SSIYNTHTASTMYVPDHILGIES*ATSKSS
Trigger: GGAGCTCTTGGAGGTGGCCAAAGACTCGATCCCCAG...GATGTGGTCTGGTACATACATGGTGGATGCTGTGTGTGTATTATATATACTACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
CDS-3UTR CAA 90 bp AAACGAGATTGTTCTTTGGTCCCCAGGGACCTGTCTCTGAACTCGCAATCTAGCAGGAAAGGTGAATTCTaGAAGATCTCCTCTACCTCC +
Preference number: 5 (lower is better)
Translates to: KRDCSLVPRDLSLNSQSSRKGEF*KISSTS
Trigger: GGAGGTAGAGGAGATCTTCAAGAATTCACCTTTCCT...GCTAGATTGCGAGTTCAGAGACAGGTCCCTGGGGACCAAAGAACAATCTCGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CAA 90 bp TCTGGTGCCAGCCATGCACCCACCAAGTGGTTAGGAGCTATTCACATTAGATGTAGGAAAGGTGAATTCTaGAAGATCTCCTCTACCTCC +
Preference number: 5 (lower is better)
Translates to: SGASHAPTKWLGAIHIRCRKGEF*KISSTS
Trigger: GGAGGTAGAGGAGATCTTCAAGAATTCACCTTTCCT...ACATCTAATGTGAATAGCTCCTAACCACTTGGTGGGTGCATGGCTGGCACCAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CAA 90 bp CAGGTCCTCCTTGTGTGGCTGAGTGCTTCATTATTTGGGGTTTTGAAGTGTGTGGTAGCCCCTAGGTGTTaGTTCCAGGGTTTTCTCAAA +
Preference number: 5 (lower is better)
Translates to: QVLLVWLSASLFGVLKCVVAPRC*FQGFLK
Trigger: TTTGAGAAAACCCTGGAACAAACACCTAGGGGCTAC...CACACACTTCAAAACCCCAAATAATGAAGCACTCAGCCACACAAGGAGGACCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
CDS-3UTR CAA 90 bp AAAATGTCTCTGAGTCCACGCCTTCCTGTGAGAAAACTGTTCAGAAATGCAGGCCCAGAGTTGCCAGTCTaGCAGCTTTCAGTCCAAATC +
Preference number: 5 (lower is better)
Translates to: KMSLSPRLPVRKLFRNAGPELPV*QLSVQI
Trigger: GATTTGGACTGAAAGCTGCAAGACTGGCAACTCTGG...GCCTGCATTTCTGAACAGTTTTCTCACAGGAAGGCGTGGACTCAGAGACATTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CAA 90 bp GAAAATGTCTCTGAGTCCACGCCTTCCTGTGAGAAAACTGTTCAGAAATGCAGGCCAGAGTTGCCAGTCTaGCAGCTTTCAGTCCAAATC +
Preference number: 5 (lower is better)
Translates to: ENVSESTPSCEKTVQKCRPELPV*QLSVQI
Trigger: GATTTGGACTGAAAGCTGCAAGACTGGCAACTCTGG...CCTGCATTTCTGAACAGTTTTCTCACAGGAAGGCGTGGACTCAGAGACATTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CAA 90 bp AATAAAAGATGGCAGCCGCTGGAAAATGATGATGGCTACAACCTCTCAGGACAAGCCCATCTCCCCTTCTaGGTTACCACCATACTGGTA +
Preference number: 5 (lower is better)
Translates to: NKRWQPLENDDGYNLSGQAHLPF*VTTILV
Trigger: TACCAGTATGGTGGTAACCAAGAAGGGGAGATGGGC...TTGTCCTGAGAGGTTGTAGCCATCATCATTTTCCAGCGGCTGCCATCTTTTATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
CDS-3UTR CAA 90 bp GAAAATGTCTCTGAGTCCACGCCTTCCTGTGAGAAAACTGTTCAGAAATGCAGGGTAGCCCCTAGGTGTTaGTTCCAGGGTTTTCTCAAA +
Preference number: 5 (lower is better)
Translates to: ENVSESTPSCEKTVQKCRVAPRC*FQGFLK
Trigger: TTTGAGAAAACCCTGGAACAAACACCTAGGGGCTAC...CCTGCATTTCTGAACAGTTTTCTCACAGGAAGGCGTGGACTCAGAGACATTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CAA 90 bp GCAGGACTCTGTAACAAAGAATCCCAAAAGATTTACAGTCTGGTGCCAGCCATGGTAGCCCCTAGGTGTTaGTTCCAGGGTTTTCTCAAA +
Preference number: 5 (lower is better)
Translates to: AGLCNKESQKIYSLVPAMVAPRC*FQGFLK
Trigger: TTTGAGAAAACCCTGGAACAAACACCTAGGGGCTAC...CATGGCTGGCACCAGACTGTAAATCTTTTGGGATTCTTTGTTACAGAGTCCTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CAA 90 bp AACAAAGAATCCCAAAAGATTTACAGTCTGGTGCCAGCCATGCACCCACCAAGTGTAGCCCCTAGGTGTTaGTTCCAGGGTTTTCTCAAA +
Preference number: 5 (lower is better)
Translates to: NKESQKIYSLVPAMHPPSVAPRC*FQGFLK
Trigger: TTTGAGAAAACCCTGGAACAAACACCTAGGGGCTAC...ACTTGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTTTGGGATTCTTTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CAA 90 bp GTAACAAAGAATCCCAAAAGATTTACAGTCTGGTGCCAGCCATGCACCCACCAACTGCTTCCAACCATCTaGGTAAACAGGCACTTCGAA +
Preference number: 5 (lower is better)
Translates to: VTKNPKRFTVWCQPCTHQLLPTI*VNRHFE
Trigger: TTCGAAGTGCCTGTTTACCAAGATGGTTGGAAGCAG...TTGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTTTGGGATTCTTTGTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CAA 90 bp AACAAAGAATCCCAAAAGATTTACAGTCTGGTGCCAGCCATGCACCCACCAAGTCTGCTTCCAACCATCTaGGTAAACAGGCACTTCGAA +
Preference number: 5 (lower is better)
Translates to: NKESQKIYSLVPAMHPPSLLPTI*VNRHFE
Trigger: TTCGAAGTGCCTGTTTACCAAGATGGTTGGAAGCAG...ACTTGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTTTGGGATTCTTTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CAA 90 bp AATCCCAAAAGATTTACAGTCTGGTGCCAGCCATGCACCCACCAAGTGGTTAGGCAACCAGTCTCTATGTaGTTCACTTTCTTTGTGAGC +
Preference number: 5 (lower is better)
Translates to: NPKRFTVWCQPCTHQVVRQPVSM*FTFFVS
Trigger: GCTCACAAAGAAAGTGAACAACATAGAGACTGGTTG...CCTAACCACTTGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTTTGGGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CAA 90 bp TGTAACAAAGAATCCCAAAAGATTTACAGTCTGGTGCCAGCCATGCACCCACCAAGGAAAGGTGAATTCTaGAAGATCTCCTCTACCTCC +
Preference number: 5 (lower is better)
Translates to: CNKESQKIYSLVPAMHPPRKGEF*KISSTS
Trigger: GGAGGTAGAGGAGATCTTCAAGAATTCACCTTTCCT...TGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTTTGGGATTCTTTGTTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CAA 90 bp AGTAGTATATATAATACACACACAGCATCCACCATGTATGTACCAGACCACATCGGACCTGAGGCTTTGTaGCTGAAGCAGTGCTGCTCA +
Preference number: 5 (lower is better)
Translates to: SSIYNTHTASTMYVPDHIGPEAL*LKQCCS
Trigger: TGAGCAGCACTGCTTCAGCAACAAAGCCTCAGGTCC...GATGTGGTCTGGTACATACATGGTGGATGCTGTGTGTGTATTATATATACTACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072061.12
CDS-3UTR CAA 90 bp AGGTCAGAAAATGTCTCTGAGTCCACGCCTTCCTGTGAGAAAACTGTTCAGAAAAGGAAAGGTGAATTCTaGAAGATCTCCTCTACCTCC +
Preference number: 5 (lower is better)
Translates to: RSENVSESTPSCEKTVQKRKGEF*KISSTS
Trigger: GGAGGTAGAGGAGATCTTCAAGAATTCACCTTTCCT...TTTCTGAACAGTTTTCTCACAGGAAGGCGTGGACTCAGAGACATTTTCTGACCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CAA 90 bp TACTACACAAACAAAGGAATCTCCAAGATGTTCTCCCTCACTTCACTTGGCAACGTAGCCCCTAGGTGTTaGTTCCAGGGTTTTCTCAAA +
Preference number: 5 (lower is better)
Translates to: YYTNKGISKMFSLTSLGNVAPRC*FQGFLK
Trigger: TTTGAGAAAACCCTGGAACAAACACCTAGGGGCTAC...GTTGCCAAGTGAAGTGAGGGAGAACATCTTGGAGATTCCTTTGTTTGTGTAGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
CDS-3UTR CAA 90 bp TACTACACAAACAAAGGAATCTCCAAGATGTTCTCCCTCACTTCACTTGGCAACCTGCTTCCAACCATCTaGGTAAACAGGCACTTCGAA +
Preference number: 5 (lower is better)
Translates to: YYTNKGISKMFSLTSLGNLLPTI*VNRHFE
Trigger: TTCGAAGTGCCTGTTTACCAAGATGGTTGGAAGCAG...GTTGCCAAGTGAAGTGAGGGAGAACATCTTGGAGATTCCTTTGTTTGTGTAGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
CDS-3UTR CAA 90 bp AACAAAGAATCCCAAAAGATTTACAGTCTGGTGCCAGCCATGCACCCACCAAGTCAACCAGTCTCTATGTaGTTCACTTTCTTTGTGAGC +
Preference number: 5 (lower is better)
Translates to: NKESQKIYSLVPAMHPPSQPVSM*FTFFVS
Trigger: GCTCACAAAGAAAGTGAACAACATAGAGACTGGTTG...ACTTGGTGGGTGCATGGCTGGCACCAGACTGTAAATCTTTTGGGATTCTTTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS-3UTR CAA 90 bp TGGCTGAGTGCTTCATTATTTGGGGTTTTGAAGTGTGTGTGTACTGCAAAGTGCCAACCAGTCTCTATGTaGTTCACTTTCTTTGTGAGC +
Preference number: 5 (lower is better)
Translates to: WLSASLFGVLKCVCTAKCQPVSM*FTFFVS
Trigger: GCTCACAAAGAAAGTGAACAACATAGAGACTGGTTG...GCACTTTGCAGTACACACACACTTCAAAACCCCAAATAATGAAGCACTCAGCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
CDS-3UTR CAA 90 bp AATAAAAGATGGCAGCCGCTGGAAAATGATGATGGCTACAACCTCTCAGGACAACAACCAGTCTCTATGTaGTTCACTTTCTTTGTGAGC +
Preference number: 5 (lower is better)
Translates to: NKRWQPLENDDGYNLSGQQPVSM*FTFFVS
Trigger: GCTCACAAAGAAAGTGAACAACATAGAGACTGGTTG...TTGTCCTGAGAGGTTGTAGCCATCATCATTTTCCAGCGGCTGCCATCTTTTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000120942.8
CDS-3UTR CAA 90 bp AGGTCAGAAAATGTCTCTGAGTCCACGCCTTCCTGTGAGAAAACTGTTCAGAAACAACCAGTCTCTATGTaGTTCACTTTCTTTGTGAGC +
Preference number: 5 (lower is better)
Translates to: RSENVSESTPSCEKTVQKQPVSM*FTFFVS
Trigger: GCTCACAAAGAAAGTGAACAACATAGAGACTGGTTG...TTTCTGAACAGTTTTCTCACAGGAAGGCGTGGACTCAGAGACATTTTCTGACCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS CAA 90 bp GCAGAGCCTGGGCTTTCTGCTCAGGCAGCAAACGGAGTCCGGCCGTaGCTTTCAGAACCACCGGGGTCCTTTCCCAGTGGCTTCTGGGGA +
Preference number: 6 (lower is better)
Translates to: AEPGLSAQAANGVRP*LSEPPGSFPSGFWG
Trigger: TCCCCAGAAGCCACTGGGAAAGGACCCCGGTGGTTCTGAAAGCAACGGCCGGACTCCGTTTGCTGCCTGAGCAGAAAGCCCAGGCTCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS CAA 72 bp GGGGTCCTTTCCCAGTGGCTTCTGGGGATCGAGTCTTaGGCCACCTCCAAGAGCTCCTGGACAGTCTCAGCA +
Preference number: 6 (lower is better)
Translates to: GVLSQWLLGIES*ATSKSSWTVSA
Trigger: TGCTGAGACTGTCCAGGAGCTCTTGGAGGTGGCCAAAGACTCGATCCCCAGAAGCCACTGGGAAAGGACCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS CAA 90 bp CCCCAGGAAGTGGCCATATTCTTCCCAAGATGTGGACCTGAGGCTTaGTTGCTGAAGCAGTGCTGCTCACACTCCTGTGGAGGCAGGGTC +
Preference number: 6 (lower is better)
Translates to: PQEVAIFFPRCGPEA*LLKQCCSHSCGGRV
Trigger: GACCCTGCCTCCACAGGAGTGTGAGCAGCACTGCTTCAGCAACAAAGCCTCAGGTCCACATCTTGGGAAGAATATGGCCACTTCCTGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072061.12
CDS CCA 72 bp TTCTTGAAGATCTCCTCTACCTCCAAGAGCAGAGCCTaGGCTTTCTGCTCAGGCAGCAAACGGAGTCCGGCC +
Preference number: 6 (lower is better)
Translates to: FLKISSTSKSRA*AFCSGSKRSPA
Trigger: GGCCGGACTCCGTTTGCTGCCTGAGCAGAAAGCCCAGGCTCTGCTCTTGGAGGTAGAGGAGATCTTCAAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS TCA 72 bp TATTCTTCCCAAGATGTGGACCTGAGGCTTTGTTGCTaGAGCAGTGCTGCTCACACTCCTGTGGAGGCAGGG +
Preference number: 6 (lower is better)
Translates to: YSSQDVDLRLCC*SSAAHTPVEAG
Trigger: CCCTGCCTCCACAGGAGTGTGAGCAGCACTGCTTCAGCAACAAAGCCTCAGGTCCACATCTTGGGAAGAATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072061.12
CDS CCA 72 bp AGAGAAAGCGTAGAAGGCGCTTCCTCGGACTTCTTCTaGCTGGTGAAGTTTCCCCTGTACTACCCTCAGCAC +
Preference number: 6 (lower is better)
Translates to: RESVEGASSDFF*LVKFPLYYPQH
Trigger: GTGCTGAGGGTAGTACAGGGGAAACTTCACCAGCCAGAAGAAGTCCGAGGAAGCGCCTTCTACGCTTTCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS CAA 72 bp GCCATATTCTTCCCAAGATGTGGACCTGAGGCTTTGTaGCTGAAGCAGTGCTGCTCACACTCCTGTGGAGGC +
Preference number: 6 (lower is better)
Translates to: AIFFPRCGPEAL*LKQCCSHSCGG
Trigger: GCCTCCACAGGAGTGTGAGCAGCACTGCTTCAGCAACAAAGCCTCAGGTCCACATCTTGGGAAGAATATGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072061.12
CDS TCA 72 bp CCAGGAAGTGGCCATATTCTTCCCAAGATGTGGACCTaGGGCTTTGTTGCTGAAGCAGTGCTGCTCACACTC +
Preference number: 6 (lower is better)
Translates to: PGSGHILPKMWT*GFVAEAVLLTL
Trigger: GAGTGTGAGCAGCACTGCTTCAGCAACAAAGCCTCAGGTCCACATCTTGGGAAGAATATGGCCACTTCCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072061.12
CDS CAA 72 bp CTAACGCTGCCATCTGGGACCAGGAAAGGTGAATTCTaGAAGATCTCCTCTACCTCCAAGAGCAGAGCCTGG +
Preference number: 6 (lower is better)
Translates to: LTLPSGTRKGEF*KISSTSKSRAW
Trigger: CCAGGCTCTGCTCTTGGAGGTAGAGGAGATCTTCAAGAATTCACCTTTCCTGGTCCCAGATGGCAGCGTTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS CAA 72 bp GTGGCCATATTCTTCCCAAGATGTGGACCTGAGGCTTaGTTGCTGAAGCAGTGCTGCTCACACTCCTGTGGA +
Preference number: 6 (lower is better)
Translates to: VAIFFPRCGPEA*LLKQCCSHSCG
Trigger: TCCACAGGAGTGTGAGCAGCACTGCTTCAGCAACAAAGCCTCAGGTCCACATCTTGGGAAGAATATGGCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072061.12
CDS GCA 72 bp TCCATCAGTCCCTTTTGCTTCCAGGGCTCCCAGAGTTaGCAGTCTTGCAGCTTTCAGTCCAAATCCCAAGTA +
Preference number: 6 (lower is better)
Translates to: SISPFCFQGSQS*QSCSFQSKSQV
Trigger: TACTTGGGATTTGGACTGAAAGCTGCAAGACTGGCAACTCTGGGAGCCCTGGAAGCAAAAGGGACTGATGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS CCA 72 bp TCAAAGCCCATCTCCCCTTCTTGGTTACCACCATACTaGTATTTCACACCCCCAAAGATCCACTCTGCTTCC +
Preference number: 6 (lower is better)
Translates to: SKPISPSWLPPY*YFTPPKIHSAS
Trigger: GGAAGCAGAGTGGATCTTTGGGGGTGTGAAATACCAGTATGGTGGTAACCAAGAAGGGGAGATGGGCTTTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8
CDS CAA 90 bp ACTGGTATTTCACACCCCCAAAGATCCACTCTGCTTCCAACCATCTaGGTAAACAGGCACTTCGAAACGTATGTCCATCAGTCCCTTTTG +
Preference number: 6 (lower is better)
Translates to: TGISHPQRSTLLPTI*VNRHFETYVHQSLL
Trigger: CAAAAGGGACTGATGGACATACGTTTCGAAGTGCCTGTTTACCAAGATGGTTGGAAGCAGAGTGGATCTTTGGGGGTGTGAAATACCAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000021662.12
ENSMUST00000072061.12
ENSMUST00000110272.9
ENSMUST00000117286.2
ENSMUST00000120942.8
ENSMUST00000122194.8