RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ENOX1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022012

Ensembl transcript IDs: ENSMUST00000022589.9, ENSMUST00000227662.2, ENSMUST00000227831.2

Found 277 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TTGGTGGCTCCGCACAGGTCCCACGCTGGCAGACCCCAGCCCTCCTaGTCCTGTACTGTACAGCCCTGGCTGGCTTCAGACGGTTTCGCT +
Preference number: 1 (lower is better)
Translates to: LVAPHRSHAGRPQPS*SCTVQPWLASDGFA
Trigger: AGCGAAACCGTCTGAAGCCAGCCAGGGCTGTACAGTACAGGAGCAGGAGGGCTGGGGTCTGCCAGCGTGGGACCTGTGCGGAGCCACCAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
3UTR CCA 90 bp CACGCTGGCAGACCCCAGCCCTCCTGCTCCTGTACTGTACAGCCCTaGCTGGCTTCAGACGGTTTCGCTTCCAGCTCTCCTGGACGTCAG +
Preference number: 1 (lower is better)
Translates to: HAGRPQPSCSCTVQP*LASDGFASSSPGRQ
Trigger: CTGACGTCCAGGAGAGCTGGAAGCGAAACCGTCTGAAGCCAGCCAGGGCTGTACAGTACAGGAGCAGGAGGGCTGGGGTCTGCCAGCGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
3UTR CCA 90 bp GATGTCACTGAACAAAGCTTTGGTGGCTCCGCACAGGTCCCACGCTaGCAGACCCCAGCCCTCCTGCTCCTGTACTGTACAGCCCTGGCT +
Preference number: 1 (lower is better)
Translates to: DVTEQSFGGSAQVPR*QTPALLLLYCTALA
Trigger: AGCCAGGGCTGTACAGTACAGGAGCAGGAGGGCTGGGGTCTGCCAGCGTGGGACCTGTGCGGAGCCACCAAAGCTTTGTTCAGTGACATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
3UTR TCA 90 bp TCCTGTAGGCATCCAGTTGCCACCGGAGACTGTCATTCTCCTCTTTaGGGGCGTAGGCCTGAGCAGCCAGGGCTGATTCATCGACTCTCA +
Preference number: 1 (lower is better)
Translates to: SCRHPVATGDCHSPL*GRRPEQPGLIHRLS
Trigger: TGAGAGTCGATGAATCAGCCCTGGCTGCTCAGGCCTACGCCCTCAAAGAGGAGAATGACAGTCTCCGGTGGCAACTGGATGCCTACAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR GCA 90 bp TCCTGGATGGCCAGCAATTGCTGCTGCATGCCTTGCATGGTTTGCTaGAGGAACTGTAGCTGTTGGTCCTTGGTGAGGTTTTCTTCTGTC +
Preference number: 1 (lower is better)
Translates to: SWMASNCCCMPCMVC*RNCSCWSLVRFSSV
Trigger: GACAGAAGAAAACCTCACCAAGGACCAACAGCTACAGTTCCTGCAGCAAACCATGCAAGGCATGCAGCAGCAATTGCTGGCCATCCAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR GCA 90 bp TCCTCCTGGATGGCCAGCAATTGCTGCTGCATGCCTTGCATGGTTTaGTGCAGGAACTGTAGCTGTTGGTCCTTGGTGAGGTTTTCTTCT +
Preference number: 1 (lower is better)
Translates to: SSWMASNCCCMPCMV*CRNCSCWSLVRFSS
Trigger: AGAAGAAAACCTCACCAAGGACCAACAGCTACAGTTCCTGCAGCAAACCATGCAAGGCATGCAGCAGCAATTGCTGGCCATCCAGGAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR GCA 90 bp CTGGAGGACTTTCAGCAACGCTTGCGTGTGAGACTGCTCCTCCTTTaGCTGCTCCAATTCCGACTTTTTGTTGTTCAGCTCCTCCTGGAT +
Preference number: 1 (lower is better)
Translates to: LEDFQQRLRVRLLLL*LLQFRLFVVQLLLD
Trigger: ATCCAGGAGGAGCTGAACAACAAAAAGTCGGAATTGGAGCAGGCAAAGGAGGAGCAGTCTCACACGCAAGCGTTGCTGAAAGTCCTCCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR CCA 90 bp TGCTGCTGCATGCCTTGCATGGTTTGCTGCAGGAACTGTAGCTGTTaGTCCTTGGTGAGGTTTTCTTCTGTCCGGAAGAGCTGTTCCTTC +
Preference number: 1 (lower is better)
Translates to: CCCMPCMVCCRNCSC*SLVRFSSVRKSCSF
Trigger: GAAGGAACAGCTCTTCCGGACAGAAGAAAACCTCACCAAGGACCAACAGCTACAGTTCCTGCAGCAAACCATGCAAGGCATGCAGCAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR TCA 90 bp TGCCTTGCATGGTTTGCTGCAGGAACTGTAGCTGTTGGTCCTTGGTaGGGTTTTCTTCTGTCCGGAAGAGCTGTTCCTTCTCTTGCTTCA +
Preference number: 1 (lower is better)
Translates to: CLAWFAAGTVAVGPW*GFLLSGRAVPSLAS
Trigger: TGAAGCAAGAGAAGGAACAGCTCTTCCGGACAGAAGAAAACCTCACCAAGGACCAACAGCTACAGTTCCTGCAGCAAACCATGCAAGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR TCA 90 bp ACATTGATTTCCTGCTCCTGGAGGACTTTCAGCAACGCTTGCGTGTaGGACTGCTCCTCCTTTGCCTGCTCCAATTCCGACTTTTTGTTG +
Preference number: 1 (lower is better)
Translates to: TLISCSWRTFSNACV*DCSSFACSNSDFLL
Trigger: CAACAAAAAGTCGGAATTGGAGCAGGCAAAGGAGGAGCAGTCTCACACGCAAGCGTTGCTGAAAGTCCTCCAGGAGCAGGAAATCAATGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR TCA 90 bp CAGATACTCTATATTAGCTCCAAAGGGGTGAACGTGAAGAAACGTTaGTATGATGCCTATCAGCAGGGCCTCCTTCTCAGATTTCAAACC +
Preference number: 1 (lower is better)
Translates to: QILYISSKGVNVKKR*YDAYQQGLLLRFQT
Trigger: GGTTTGAAATCTGAGAAGGAGGCCCTGCTGATAGGCATCATATCAACGTTTCTTCACGTTCACCCCTTTGGAGCTAATATAGAGTATCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR TCA 90 bp TTGCTCTATTCTGCAGCAAGGCCTAGTTTGAGATTTTGTGATCATTaGCTGTGGAATCTTTGCTTGGTATTCATAGGGACAGGTCTGGCA +
Preference number: 1 (lower is better)
Translates to: LLYSAARPSLRFCDH*LWNLCLVFIGTGLA
Trigger: TGCCAGACCTGTCCCTATGAATACCAAGCAAAGATTCCACAGTCAATGATCACAAAATCTCAAACTAGGCCTTGCTGCAGAATAGAGCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
3UTR TCA 90 bp TTCAATTTCATTGGCGGATATCTTAGAGTCCAGCTGCTGCATGTATaGCCACAGATACTCTATATTAGCTCCAAAGGGGTGAACGTGAAG +
Preference number: 1 (lower is better)
Translates to: FNFIGGYLRVQLLHV*PQILYISSKGVNVK
Trigger: CTTCACGTTCACCCCTTTGGAGCTAATATAGAGTATCTGTGGTCATACATGCAGCAGCTGGACTCTAAGATATCCGCCAATGAAATTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR GCA 90 bp ATCAGAAGCATTTCAATTTCATTGGCGGATATCTTAGAGTCCAGCTaGTGCATGTATGACCACAGATACTCTATATTAGCTCCAAAGGGG +
Preference number: 1 (lower is better)
Translates to: IRSISISLADILESS*CMYDHRYSILAPKG
Trigger: CCCCTTTGGAGCTAATATAGAGTATCTGTGGTCATACATGCAGCAGCTGGACTCTAAGATATCCGCCAATGAAATTGAAATGCTTCTGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR TCA 90 bp ACCAAGCACGGGACAGCAGCAGTTGTTCCTTCTATTTACATTTTATaGAAATTGCTATGCAGTCCATGTGAAAAGAATACGCGATGGAGA +
Preference number: 1 (lower is better)
Translates to: TKHGTAAVVPSIYIL*KLLCSPCEKNTRWR
Trigger: TCTCCATCGCGTATTCTTTTCACATGGACTGCATAGCAATTTTCATAAAATGTAAATAGAAGGAACAACTGCTGCTGTCCCGTGCTTGGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227662.2
ENSMUST00000227831.2
3UTR TCA 90 bp CCATTAACTGTAAGCATTTGCTCTATTCTGCAGCAAGGCCTAGTTTaGGATTTTGTGATCATTGACTGTGGAATCTTTGCTTGGTATTCA +
Preference number: 1 (lower is better)
Translates to: PLTVSICSILQQGLV*DFVIIDCGIFAWYS
Trigger: TGAATACCAAGCAAAGATTCCACAGTCAATGATCACAAAATCTCAAACTAGGCCTTGCTGCAGAATAGAGCAAATGCTTACAGTTAATGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
3UTR CAA 90 bp ATTTCCACGCACATGAAAACGCCACAGATGTCACTGAACAAAGCTTaGGTGGCTCCGCACAGGTCCCACGCTGGCAGACCCCAGCCCTCC +
Preference number: 2 (lower is better)
Translates to: ISTHMKTPQMSLNKA*VAPHRSHAGRPQPS
Trigger: GGAGGGCTGGGGTCTGCCAGCGTGGGACCTGTGCGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTCATGTGCGTGGAAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
3UTR-3UTR TCA 90 bp CCTCCTGCTCCTGTACTGTACAGCCCTGGCTGGCTTCAGACGGTTTCGCTTCCATGTCATTCTCCTCTTTaGGGGCGTAGGCCTGAGCAG +
Preference number: 2 (lower is better)
Translates to: PPAPVLYSPGWLQTVSLPCHSPL*GRRPEQ
Trigger: CTGCTCAGGCCTACGCCCTCAAAGAGGAGAATGACA...TGGAAGCGAAACCGTCTGAAGCCAGCCAGGGCTGTACAGTACAGGAGCAGGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR-3UTR TCA 90 bp CAGCAACGCTTGCGTGTGAGACTGCTCCTCCTTTGCCTGCTCCAATTCCGACTTCGCCACAGATGTCACTaGACAAAGCTTTGGTGGCTC +
Preference number: 2 (lower is better)
Translates to: QQRLRVRLLLLCLLQFRLRHRCH*TKLWWL
Trigger: GAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCG...AAGTCGGAATTGGAGCAGGCAAAGGAGGAGCAGTCTCACACGCAAGCGTTGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR-3UTR TCA 90 bp CCTCCTGCTCCTGTACTGTACAGCCCTGGCTGGCTTCAGACGGTTTCGCTTCCAGCTATGCAGTCCATGTaGAAAGAATACGCGATGGAG +
Preference number: 2 (lower is better)
Translates to: PPAPVLYSPGWLQTVSLPAMQSM*KEYAME
Trigger: CTCCATCGCGTATTCTTTTCACATGGACTGCATAGC...TGGAAGCGAAACCGTCTGAAGCCAGCCAGGGCTGTACAGTACAGGAGCAGGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227662.2
ENSMUST00000227831.2
3UTR-3UTR GCA 90 bp AACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTCCGCACAGGTCCCACGCATGGCCAGCAATTGCTaGTGCATGCCTTGCATGGTT +
Preference number: 2 (lower is better)
Translates to: NATDVTEQSFGGSAQVPRMASNC*CMPCMV
Trigger: AACCATGCAAGGCATGCAGCAGCAATTGCTGGCCAT...GCGTGGGACCTGTGCGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR CAA 90 bp GTCCTTGGTGAGGTTTTCTTCTGTCCGGAAGAGCTGTTCCTTCTCTaGCTTCAGCAGCTCCACCTCGTTCCTGTAGGCATCCAGTTGCCA +
Preference number: 2 (lower is better)
Translates to: VLGEVFFCPEELFLL*LQQLHLVPVGIQLP
Trigger: TGGCAACTGGATGCCTACAGGAACGAGGTGGAGCTGCTGAAGCAAGAGAAGGAACAGCTCTTCCGGACAGAAGAAAACCTCACCAAGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR CAA 90 bp CCTGGAGGACTTTCAGCAACGCTTGCGTGTGAGACTGCTCCTCCTTaGCCTGCTCCAATTCCGACTTTTTGTTGTTCAGCTCCTCCTGGA +
Preference number: 2 (lower is better)
Translates to: PGGLSATLACETAPP*PAPIPTFCCSAPPG
Trigger: TCCAGGAGGAGCTGAACAACAAAAAGTCGGAATTGGAGCAGGCAAAGGAGGAGCAGTCTCACACGCAAGCGTTGCTGAAAGTCCTCCAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR CAA 90 bp CGTCAACACATTGATTTCCTGCTCCTGGAGGACTTTCAGCAACGCTaGCGTGTGAGACTGCTCCTCCTTTGCCTGCTCCAATTCCGACTT +
Preference number: 2 (lower is better)
Translates to: RQHIDFLLLEDFQQR*RVRLLLLCLLQFRL
Trigger: AAGTCGGAATTGGAGCAGGCAAAGGAGGAGCAGTCTCACACGCAAGCGTTGCTGAAAGTCCTCCAGGAGCAGGAAATCAATGTGTTGACG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR-3UTR CCA 90 bp ATGTTGTCAGCTATACATTACATACATAACTGTAGCCTGGCAACCACCATTGCTGCACAGGTCCCACGCTaGCAGACCCCAGCCCTCCTG +
Preference number: 2 (lower is better)
Translates to: MLSAIHYIHNCSLATTIAAQVPR*QTPALL
Trigger: CAGGAGGGCTGGGGTCTGCCAGCGTGGGACCTGTGC...AGCAATGGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAGCTGACAACAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
3UTR CAA 90 bp TGCATGCCTTGCATGGTTTGCTGCAGGAACTGTAGCTGTTGGTCCTaGGTGAGGTTTTCTTCTGTCCGGAAGAGCTGTTCCTTCTCTTGC +
Preference number: 2 (lower is better)
Translates to: CMPCMVCCRNCSCWS*VRFSSVRKSCSFSC
Trigger: GCAAGAGAAGGAACAGCTCTTCCGGACAGAAGAAAACCTCACCAAGGACCAACAGCTACAGTTCCTGCAGCAAACCATGCAAGGCATGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR-3UTR TCA 90 bp CAGCTATACATTACATACATAACTGTAGCCTGGCAACCACCATTGCTACAGCGCCGCCACAGATGTCACTaGACAAAGCTTTGGTGGCTC +
Preference number: 2 (lower is better)
Translates to: QLYITYITVAWQPPLLQRRHRCH*TKLWWL
Trigger: GAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCG...GCGCTGTAGCAATGGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
3UTR-3UTR TCA 90 bp TGTAAGCATTTGCTCTATTCTGCAGCAAGGCCTAGTTTGAGATTTTGTGATCATCACGGCGGATGCCCATaGGCTGCTCGCTTTGAGCGT +
Preference number: 2 (lower is better)
Translates to: CKHLLYSAARPSLRFCDHHGGCP*AARFER
Trigger: ACGCTCAAAGCGAGCAGCTCATGGGCATCCGCCGTG...ATGATCACAAAATCTCAAACTAGGCCTTGCTGCAGAATAGAGCAAATGCTTACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR-3UTR TCA 90 bp CTATACATTACATACATAACTGTAGCCTGGCAACCACCATTGCTACAGCGCCATGCTGTTGGTCCTTGGTaGGGTTTTCTTCTGTCCGGA +
Preference number: 2 (lower is better)
Translates to: LYITYITVAWQPPLLQRHAVGPW*GFLLSG
Trigger: TCCGGACAGAAGAAAACCTCACCAAGGACCAACAGC...ATGGCGCTGTAGCAATGGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR-3UTR GCA 90 bp ATTGCTACAGCGCCATTAACTGTAAGCATTTGCTCTATTCTGCAGCAAGGCCTAATCTTAGAGTCCAGCTaGTGCATGTATGACCACAGA +
Preference number: 2 (lower is better)
Translates to: IATAPLTVSICSILQQGLILESS*CMYDHR
Trigger: TCTGTGGTCATACATGCAGCAGCTGGACTCTAAGAT...TAGGCCTTGCTGCAGAATAGAGCAAATGCTTACAGTTAATGGCGCTGTAGCAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR-3UTR CCA 90 bp ATTGCTACAGCGCCATTAACTGTAAGCATTTGCTCTATTCTGCAGCAAGGCCTAAGGAACTGTAGCTGTTaGTCCTTGGTGAGGTTTTCT +
Preference number: 2 (lower is better)
Translates to: IATAPLTVSICSILQQGLRNCSC*SLVRFS
Trigger: AGAAAACCTCACCAAGGACCAACAGCTACAGTTCCT...TAGGCCTTGCTGCAGAATAGAGCAAATGCTTACAGTTAATGGCGCTGTAGCAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR-3UTR TCA 90 bp AACTGTAGCCTGGCAACCACCATTGCTACAGCGCCATTAACTGTAAGCATTTGCAGATTTTGTGATCATTaGCTGTGGAATCTTTGCTTG +
Preference number: 2 (lower is better)
Translates to: NCSLATTIATAPLTVSICRFCDH*LWNLCL
Trigger: CAAGCAAAGATTCCACAGTCAATGATCACAAAATCT...GCAAATGCTTACAGTTAATGGCGCTGTAGCAATGGTGGTTGCCAGGCTACAGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
3UTR-3UTR CCA 90 bp TGTAAGCATTTGCTCTATTCTGCAGCAAGGCCTAGTTTGAGATTTTGTGATCATGCTGCATGCCTTGCATaGTTTGCTGCAGGAACTGTA +
Preference number: 2 (lower is better)
Translates to: CKHLLYSAARPSLRFCDHAACLA*FAAGTV
Trigger: TACAGTTCCTGCAGCAAACCATGCAAGGCATGCAGC...ATGATCACAAAATCTCAAACTAGGCCTTGCTGCAGAATAGAGCAAATGCTTACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR-3UTR CCA 90 bp AATGTTACATACCAAGCACGGGACAGCAGCAGTTGTTCCTTCTATTTACATTTTCTGTTTGAACATCCGTaGCAGCCTCATCAGAAGCAT +
Preference number: 2 (lower is better)
Translates to: NVTYQARDSSSCSFYLHFLFEHP*QPHQKH
Trigger: ATGCTTCTGATGAGGCTGCCACGGATGTTCAAACAG...AAAATGTAAATAGAAGGAACAACTGCTGCTGTCCCGTGCTTGGTATGTAACATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR-3UTR GCA 90 bp TACATACCAAGCACGGGACAGCAGCAGTTGTTCCTTCTATTTACATTTTATGAATTAGAGTCCAGCTGCTaGATGTATGACCACAGATAC +
Preference number: 2 (lower is better)
Translates to: YIPSTGQQQLFLLFTFYELESSC*MYDHRY
Trigger: GTATCTGTGGTCATACATGCAGCAGCTGGACTCTAA...TTCATAAAATGTAAATAGAAGGAACAACTGCTGCTGTCCCGTGCTTGGTATGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR-3UTR CCA 90 bp ACATACCAAGCACGGGACAGCAGCAGTTGTTCCTTCTATTTACATTTTATGAAATACATAACTGTAGCCTaGCAACCACCATTGCTACAG +
Preference number: 2 (lower is better)
Translates to: TYQARDSSSCSFYLHFMKYITVA*QPPLLQ
Trigger: CTGTAGCAATGGTGGTTGCCAGGCTACAGTTATGTA...TTTCATAAAATGTAAATAGAAGGAACAACTGCTGCTGTCCCGTGCTTGGTATGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227662.2
ENSMUST00000227831.2
3UTR-3UTR TCA 90 bp CTATGCAGTCCATGTGAAAAGAATACGCGATGGAGAACCGTTACATTAGAAAAAAACGTGAAGAAACGTTaGTATGATGCCTATCAGCAG +
Preference number: 2 (lower is better)
Translates to: LCSPCEKNTRWRTVTLEKNVKKR*YDAYQQ
Trigger: CTGCTGATAGGCATCATATCAACGTTTCTTCACGTT...TTTTTCTAATGTAACGGTTCTCCATCGCGTATTCTTTTCACATGGACTGCATAG
40% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR-3UTR CCA 90 bp TGTAAGCATTTGCTCTATTCTGCAGCAAGGCCTAGTTTGAGATTTTGTGATCATTCAGATTTCAAACCTTaGCTTCTCTTTTCAGTGTTG +
Preference number: 2 (lower is better)
Translates to: CKHLLYSAARPSLRFCDHSDFKP*LLFSVL
Trigger: CAACACTGAAAAGAGAAGCCAAGGTTTGAAATCTGA...ATGATCACAAAATCTCAAACTAGGCCTTGCTGCAGAATAGAGCAAATGCTTACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR GCA 72 bp CCGCACAGGTCCCACGCTGGCAGACCCCAGCCCTCCTaGTCCTGTACTGTACAGCCCTGGCTGGCTTCAGAC +
Preference number: 3 (lower is better)
Translates to: PHRSHAGRPQPS*SCTVQPWLASD
Trigger: GTCTGAAGCCAGCCAGGGCTGTACAGTACAGGAGCAGGAGGGCTGGGGTCTGCCAGCGTGGGACCTGTGCGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
3UTR CCA 72 bp AGACCCCAGCCCTCCTGCTCCTGTACTGTACAGCCCTaGCTGGCTTCAGACGGTTTCGCTTCCAGCTCTCCT +
Preference number: 3 (lower is better)
Translates to: RPQPSCSCTVQP*LASDGFASSSP
Trigger: AGGAGAGCTGGAAGCGAAACCGTCTGAAGCCAGCCAGGGCTGTACAGTACAGGAGCAGGAGGGCTGGGGTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
3UTR CCA 72 bp GAACAAAGCTTTGGTGGCTCCGCACAGGTCCCACGCTaGCAGACCCCAGCCCTCCTGCTCCTGTACTGTACA +
Preference number: 3 (lower is better)
Translates to: EQSFGGSAQVPR*QTPALLLLYCT
Trigger: TGTACAGTACAGGAGCAGGAGGGCTGGGGTCTGCCAGCGTGGGACCTGTGCGGAGCCACCAAAGCTTTGTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
3UTR TCA 72 bp CATCCAGTTGCCACCGGAGACTGTCATTCTCCTCTTTaGGGGCGTAGGCCTGAGCAGCCAGGGCTGATTCAT +
Preference number: 3 (lower is better)
Translates to: HPVATGDCHSPL*GRRPEQPGLIH
Trigger: ATGAATCAGCCCTGGCTGCTCAGGCCTACGCCCTCAAAGAGGAGAATGACAGTCTCCGGTGGCAACTGGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR TCA 72 bp TCCTGCTCCTGGAGGACTTTCAGCAACGCTTGCGTGTaGGACTGCTCCTCCTTTGCCTGCTCCAATTCCGAC +
Preference number: 3 (lower is better)
Translates to: SCSWRTFSNACV*DCSSFACSNSD
Trigger: GTCGGAATTGGAGCAGGCAAAGGAGGAGCAGTCTCACACGCAAGCGTTGCTGAAAGTCCTCCAGGAGCAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR GCA 72 bp TCCTCCTGGATGGCCAGCAATTGCTGCTGCATGCCTTaGATGGTTTGCTGCAGGAACTGTAGCTGTTGGTCC +
Preference number: 3 (lower is better)
Translates to: SSWMASNCCCMP*MVCCRNCSCWS
Trigger: GGACCAACAGCTACAGTTCCTGCAGCAAACCATGCAAGGCATGCAGCAGCAATTGCTGGCCATCCAGGAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR-3UTR CAA 90 bp CCTCCTGCTCCTGTACTGTACAGCCCTGGCTGGCTTCAGACGGTTTCGCTTCCATGTAGCTGTTGGTCCTaGGTGAGGTTTTCTTCTGTC +
Preference number: 3 (lower is better)
Translates to: PPAPVLYSPGWLQTVSLPCSCWS*VRFSSV
Trigger: GACAGAAGAAAACCTCACCAAGGACCAACAGCTACA...TGGAAGCGAAACCGTCTGAAGCCAGCCAGGGCTGTACAGTACAGGAGCAGGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR GCA 72 bp ATGGCCAGCAATTGCTGCTGCATGCCTTGCATGGTTTaGTGCAGGAACTGTAGCTGTTGGTCCTTGGTGAGG +
Preference number: 3 (lower is better)
Translates to: MASNCCCMPCMV*CRNCSCWSLVR
Trigger: CCTCACCAAGGACCAACAGCTACAGTTCCTGCAGCAAACCATGCAAGGCATGCAGCAGCAATTGCTGGCCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR-3UTR CAA 90 bp CCTCCTGCTCCTGTACTGTACAGCCCTGGCTGGCTTCAGACGGTTTCGCTTCCACTGTGGAATCTTTGCTaGGTATTCATAGGGACAGGT +
Preference number: 3 (lower is better)
Translates to: PPAPVLYSPGWLQTVSLPLWNLC*VFIGTG
Trigger: ACCTGTCCCTATGAATACCAAGCAAAGATTCCACAG...TGGAAGCGAAACCGTCTGAAGCCAGCCAGGGCTGTACAGTACAGGAGCAGGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
3UTR GCA 72 bp GCCAGCAATTGCTGCTGCATGCCTTGCATGGTTTGCTaGAGGAACTGTAGCTGTTGGTCCTTGGTGAGGTTT +
Preference number: 3 (lower is better)
Translates to: ASNCCCMPCMVC*RNCSCWSLVRF
Trigger: AAACCTCACCAAGGACCAACAGCTACAGTTCCTGCAGCAAACCATGCAAGGCATGCAGCAGCAATTGCTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR CCA 72 bp TGCTCCAATTCCGACTTTTTGTTGTTCAGCTCCTCCTaGATGGCCAGCAATTGCTGCTGCATGCCTTGCATG +
Preference number: 3 (lower is better)
Translates to: CSNSDFLLFSSS*MASNCCCMPCM
Trigger: CATGCAAGGCATGCAGCAGCAATTGCTGGCCATCCAGGAGGAGCTGAACAACAAAAAGTCGGAATTGGAGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR GCA 72 bp TTTCAGCAACGCTTGCGTGTGAGACTGCTCCTCCTTTaGCTGCTCCAATTCCGACTTTTTGTTGTTCAGCTC +
Preference number: 3 (lower is better)
Translates to: FQQRLRVRLLLL*LLQFRLFVVQL
Trigger: GAGCTGAACAACAAAAAGTCGGAATTGGAGCAGGCAAAGGAGGAGCAGTCTCACACGCAAGCGTTGCTGAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR CCA 72 bp CCAATTCCGACTTTTTGTTGTTCAGCTCCTCCTGGATaGCCAGCAATTGCTGCTGCATGCCTTGCATGGTTT +
Preference number: 3 (lower is better)
Translates to: PIPTFCCSAPPG*PAIAAACLAWF
Trigger: AAACCATGCAAGGCATGCAGCAGCAATTGCTGGCCATCCAGGAGGAGCTGAACAACAAAAAGTCGGAATTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR CCA 72 bp CGCTCCCACACCAGTGAATTCCTGTTTGAACATCCGTaGCAGCCTCATCAGAAGCATTTCAATTTCATTGGC +
Preference number: 3 (lower is better)
Translates to: RSHTSEFLFEHP*QPHQKHFNFIG
Trigger: GCCAATGAAATTGAAATGCTTCTGATGAGGCTGCCACGGATGTTCAAACAGGAATTCACTGGTGTGGGAGCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR-3UTR CAA 90 bp TGTAAGGAACTGGTACACAATTACATTTCCACGCACATGAAAACGCCACAGATGCTGGATGGCCAGCAATaGCTGCTGCATGCCTTGCAT +
Preference number: 3 (lower is better)
Translates to: CKELVHNYISTHMKTPQMLDGQQ*LLHALH
Trigger: ATGCAAGGCATGCAGCAGCAATTGCTGGCCATCCAG...CATCTGTGGCGTTTTCATGTGCGTGGAAATGTAATTGTGTACCAGTTCCTTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR-3UTR CAA 90 bp CACCATTGCTACAGCGCCATTAACTGTAAGCATTTGCTCTATTCTGCAGCAAGGCTGTGGAATCTTTGCTaGGTATTCATAGGGACAGGT +
Preference number: 3 (lower is better)
Translates to: HHCYSAINCKHLLYSAARLWNLC*VFIGTG
Trigger: ACCTGTCCCTATGAATACCAAGCAAAGATTCCACAG...CCTTGCTGCAGAATAGAGCAAATGCTTACAGTTAATGGCGCTGTAGCAATGGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
3UTR-3UTR CAA 90 bp AACTGTAGCCTGGCAACCACCATTGCTACAGCGCCATTAACTGTAAGCATTTGCACGGGACAGCAGCAGTaGTTCCTTCTATTTACATTT +
Preference number: 3 (lower is better)
Translates to: NCSLATTIATAPLTVSICTGQQQ*FLLFTF
Trigger: AAATGTAAATAGAAGGAACAACTGCTGCTGTCCCGT...GCAAATGCTTACAGTTAATGGCGCTGTAGCAATGGTGGTTGCCAGGCTACAGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227662.2
ENSMUST00000227831.2
3UTR-3UTR CAA 90 bp TGTAAGCATTTGCTCTATTCTGCAGCAAGGCCTAGTTTGAGATTTTGTGATCATGAGACTGCTCCTCCTTaGCCTGCTCCAATTCCGACT +
Preference number: 3 (lower is better)
Translates to: CKHLLYSAARPSLRFCDHETAPP*PAPIPT
Trigger: AGTCGGAATTGGAGCAGGCAAAGGAGGAGCAGTCTC...ATGATCACAAAATCTCAAACTAGGCCTTGCTGCAGAATAGAGCAAATGCTTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR TCA 72 bp TATATTAGCTCCAAAGGGGTGAACGTGAAGAAACGTTaGTATGATGCCTATCAGCAGGGCCTCCTTCTCAGA +
Preference number: 3 (lower is better)
Translates to: YISSKGVNVKKR*YDAYQQGLLLR
Trigger: TCTGAGAAGGAGGCCCTGCTGATAGGCATCATATCAACGTTTCTTCACGTTCACCCCTTTGGAGCTAATATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR TCA 72 bp ATTGGCGGATATCTTAGAGTCCAGCTGCTGCATGTATaGCCACAGATACTCTATATTAGCTCCAAAGGGGTG +
Preference number: 3 (lower is better)
Translates to: IGGYLRVQLLHV*PQILYISSKGV
Trigger: CACCCCTTTGGAGCTAATATAGAGTATCTGTGGTCATACATGCAGCAGCTGGACTCTAAGATATCCGCCAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR-3UTR CAA 90 bp TGCTACAGCGCCATTAACTGTAAGCATTTGCTCTATTCTGCAGCAAGGCCTAGTTTGACTGTGGAATCTTaGCTTGGTATTCATAGGGAC +
Preference number: 3 (lower is better)
Translates to: CYSAINCKHLLYSAARPSLTVES*LGIHRD
Trigger: GTCCCTATGAATACCAAGCAAAGATTCCACAGTCAA...ACTAGGCCTTGCTGCAGAATAGAGCAAATGCTTACAGTTAATGGCGCTGTAGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
3UTR-3UTR CAA 90 bp AATGTTACATACCAAGCACGGGACAGCAGCAGTTGTTCCTTCTATTTACATTTTCCAGTGAATTCCTGTTaGAACATCCGTGGCAGCCTC +
Preference number: 3 (lower is better)
Translates to: NVTYQARDSSSCSFYLHFPVNSC*NIRGSL
Trigger: GAGGCTGCCACGGATGTTCAAACAGGAATTCACTGG...AAAATGTAAATAGAAGGAACAACTGCTGCTGTCCCGTGCTTGGTATGTAACATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR-3UTR CAA 90 bp GTTACATACCAAGCACGGGACAGCAGCAGTTGTTCCTTCTATTTACATTTTATGCTGTGGAATCTTTGCTaGGTATTCATAGGGACAGGT +
Preference number: 3 (lower is better)
Translates to: VTYQARDSSSCSFYLHFMLWNLC*VFIGTG
Trigger: ACCTGTCCCTATGAATACCAAGCAAAGATTCCACAG...CATAAAATGTAAATAGAAGGAACAACTGCTGCTGTCCCGTGCTTGGTATGTAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227662.2
ENSMUST00000227831.2
3UTR TCA 72 bp TCTGCAGCAAGGCCTAGTTTGAGATTTTGTGATCATTaGCTGTGGAATCTTTGCTTGGTATTCATAGGGACA +
Preference number: 3 (lower is better)
Translates to: SAARPSLRFCDH*LWNLCLVFIGT
Trigger: TGTCCCTATGAATACCAAGCAAAGATTCCACAGTCAATGATCACAAAATCTCAAACTAGGCCTTGCTGCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
3UTR GCA 72 bp GATAAAGCATTCTCAAGGAGTCCAATCATAGTTTTCTaGCTCTTCAATAAGGCAAAAGTCCCTGGAACAGCA +
Preference number: 3 (lower is better)
Translates to: DKAFSRSPIIVF*LFNKAKVPGTA
Trigger: TGCTGTTCCAGGGACTTTTGCCTTATTGAAGAGGCAGAAAACTATGATTGGACTCCTTGAGAATGCTTTATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227662.2
ENSMUST00000227831.2
3UTR GCA 72 bp TCAATTTCATTGGCGGATATCTTAGAGTCCAGCTGCTaGATGTATGACCACAGATACTCTATATTAGCTCCA +
Preference number: 3 (lower is better)
Translates to: SISLADILESSC*MYDHRYSILAP
Trigger: TGGAGCTAATATAGAGTATCTGTGGTCATACATGCAGCAGCTGGACTCTAAGATATCCGCCAATGAAATTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR-3UTR CAA 90 bp TACATACCAAGCACGGGACAGCAGCAGTTGTTCCTTCTATTTACATTTTATGAATTGACTGTGGAATCTTaGCTTGGTATTCATAGGGAC +
Preference number: 3 (lower is better)
Translates to: YIPSTGQQQLFLLFTFYELTVES*LGIHRD
Trigger: GTCCCTATGAATACCAAGCAAAGATTCCACAGTCAA...TTCATAAAATGTAAATAGAAGGAACAACTGCTGCTGTCCCGTGCTTGGTATGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227662.2
ENSMUST00000227831.2
3UTR TCA 72 bp GTAAGCATTTGCTCTATTCTGCAGCAAGGCCTAGTTTaGGATTTTGTGATCATTGACTGTGGAATCTTTGCT +
Preference number: 3 (lower is better)
Translates to: VSICSILQQGLV*DFVIIDCGIFA
Trigger: AGCAAAGATTCCACAGTCAATGATCACAAAATCTCAAACTAGGCCTTGCTGCAGAATAGAGCAAATGCTTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
3UTR GCA 72 bp ATTTCAATTTCATTGGCGGATATCTTAGAGTCCAGCTaGTGCATGTATGACCACAGATACTCTATATTAGCT +
Preference number: 3 (lower is better)
Translates to: ISISLADILESS*CMYDHRYSILA
Trigger: AGCTAATATAGAGTATCTGTGGTCATACATGCAGCAGCTGGACTCTAAGATATCCGCCAATGAAATTGAAAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
CDS-3UTR TCA 90 bp CCTCCTGCTCCTGTACTGTACAGCCCTGGCTGGCTTCAGACGGTTTCGCTTCCAGCTCCGAGTAGTGCATaGTGGCCGGCGGCGAGGGAG +
Preference number: 4 (lower is better)
Translates to: PPAPVLYSPGWLQTVSLPAPSSA*WPAARE
Trigger: CTCCCTCGCCGCCGGCCATCATGCACTACTCGGAGC...TGGAAGCGAAACCGTCTGAAGCCAGCCAGGGCTGTACAGTACAGGAGCAGGAGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR GCA 90 bp CATGAAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTCCGCACAGGTCTCCAGTTTGCGTCGATaGCGCTCCTCCCGGGCGCGC +
Preference number: 4 (lower is better)
Translates to: HENATDVTEQSFGGSAQVSSLRR*RSSRAR
Trigger: GCGCGCCCGGGAGGAGCGGCATCGACGCAAACTGGA...GACCTGTGCGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTCATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR TCA 90 bp AGCCCTCCTGCTCCTGTACTGTACAGCCCTGGCTGGCTTCAGACGGTTTCGCTTTTCCAGTCATCATGTTaGGGCCTGGATCGAAGCCCG +
Preference number: 4 (lower is better)
Translates to: SPPAPVLYSPGWLQTVSLFQSSC*GLDRSP
Trigger: CGGGCTTCGATCCAGGCCTCAACATGATGACTGGAA...AAGCGAAACCGTCTGAAGCCAGCCAGGGCTGTACAGTACAGGAGCAGGAGGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR GCA 90 bp AGCCCTCCTGCTCCTGTACTGTACAGCCCTGGCTGGCTTCAGACGGTTTCGCTTATCCGCCGGGTCTCCTaGACAGTCTTCAATGTCTGC +
Preference number: 4 (lower is better)
Translates to: SPPAPVLYSPGWLQTVSLIRRVS*TVFNVC
Trigger: GCAGACATTGAAGACTGTGCAGGAGACCCGGCGGAT...AAGCGAAACCGTCTGAAGCCAGCCAGGGCTGTACAGTACAGGAGCAGGAGGGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227662.2
CDS-3UTR TCA 90 bp TCCACGCACATGAAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTCCGCACGGCGGATGCCCATaGGCTGCTCGCTTTGAGCGT +
Preference number: 4 (lower is better)
Translates to: STHMKTPQMSLNKALVAPHGGCP*AARFER
Trigger: ACGCTCAAAGCGAGCAGCTCATGGGCATCCGCCGTG...CGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTCATGTGCGTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CCA 90 bp CAGCAACGCTTGCGTGTGAGACTGCTCCTCCTTTGCCTGCTCCAATTCCGACTTTGCGCACGTGGCTGTTaGCCGACTGAACCATGGAGT +
Preference number: 4 (lower is better)
Translates to: QQRLRVRLLLLCLLQFRLCARGC*PTEPWS
Trigger: ACTCCATGGTTCAGTCGGCCAACAGCCACGTGCGCA...AAGTCGGAATTGGAGCAGGCAAAGGAGGAGCAGTCTCACACGCAAGCGTTGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR CAA 72 bp CACATGAAAACGCCACAGATGTCACTGAACAAAGCTTaGGTGGCTCCGCACAGGTCCCACGCTGGCAGACCC +
Preference number: 4 (lower is better)
Translates to: HMKTPQMSLNKA*VAPHRSHAGRP
Trigger: GGGTCTGCCAGCGTGGGACCTGTGCGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTCATGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR TCA 90 bp CAGCAACGCTTGCGTGTGAGACTGCTCCTCCTTTGCCTGCTCCAATTCCGACTTTTCCAGTCATCATGTTaGGGCCTGGATCGAAGCCCG +
Preference number: 4 (lower is better)
Translates to: QQRLRVRLLLLCLLQFRLFQSSC*GLDRSP
Trigger: CGGGCTTCGATCCAGGCCTCAACATGATGACTGGAA...AAGTCGGAATTGGAGCAGGCAAAGGAGGAGCAGTCTCACACGCAAGCGTTGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
CDS-3UTR TCA 90 bp CACCATTGCTACAGCGCCATTAACTGTAAGCATTTGCTCTATTCTGCAGCAAGGGCTCCGAGTAGTGCATaGTGGCCGGCGGCGAGGGAG +
Preference number: 4 (lower is better)
Translates to: HHCYSAINCKHLLYSAARAPSSA*WPAARE
Trigger: CTCCCTCGCCGCCGGCCATCATGCACTACTCGGAGC...CCTTGCTGCAGAATAGAGCAAATGCTTACAGTTAATGGCGCTGTAGCAATGGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR GCA 90 bp CCTCCTGCTCCTGTACTGTACAGCCCTGGCTGGCTTCAGACGGTTTCGCTTCCACGGAGCTCCTCAGAGTaGTTTCGCCAAATGTCTATG +
Preference number: 4 (lower is better)
Translates to: PPAPVLYSPGWLQTVSLPRSSSE*FRQMSM
Trigger: CATAGACATTTGGCGAAAGCACTCTGAGGAGCTCCG...TGGAAGCGAAACCGTCTGAAGCCAGCCAGGGCTGTACAGTACAGGAGCAGGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CCA 90 bp GAAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTCCGCACAGGTCCCACATCATGTTGAGGCCTaGATCGAAGCCCGGCACGCA +
Preference number: 4 (lower is better)
Translates to: ENATDVTEQSFGGSAQVPHHVEA*IEARHA
Trigger: TGCGTGCCGGGCTTCGATCCAGGCCTCAACATGATG...TGGGACCTGTGCGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CCA 90 bp GAAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTCCGCACAGGTCCCATGCGCACGTGGCTGTTaGCCGACTGAACCATGGAGT +
Preference number: 4 (lower is better)
Translates to: ENATDVTEQSFGGSAQVPCARGC*PTEPWS
Trigger: ACTCCATGGTTCAGTCGGCCAACAGCCACGTGCGCA...TGGGACCTGTGCGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CCA 90 bp AGCCCTCCTGCTCCTGTACTGTACAGCCCTGGCTGGCTTCAGACGGTTTCGCTTGCTGCATGCCTTGCATaGTTTGCTGCAGGAACTGTA +
Preference number: 4 (lower is better)
Translates to: SPPAPVLYSPGWLQTVSLAACLA*FAAGTV
Trigger: TACAGTTCCTGCAGCAAACCATGCAAGGCATGCAGC...AAGCGAAACCGTCTGAAGCCAGCCAGGGCTGTACAGTACAGGAGCAGGAGGGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR TCA 90 bp GAAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTCCGCACAGGTCCCATTCCAGTCATCATGTTaGGGCCTGGATCGAAGCCCG +
Preference number: 4 (lower is better)
Translates to: ENATDVTEQSFGGSAQVPFQSSC*GLDRSP
Trigger: CGGGCTTCGATCCAGGCCTCAACATGATGACTGGAA...TGGGACCTGTGCGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR TCA 90 bp CTATACATTACATACATAACTGTAGCCTGGCAACCACCATTGCTACAGCGCCATGCTCCGAGTAGTGCATaGTGGCCGGCGGCGAGGGAG +
Preference number: 4 (lower is better)
Translates to: LYITYITVAWQPPLLQRHAPSSA*WPAARE
Trigger: CTCCCTCGCCGCCGGCCATCATGCACTACTCGGAGC...ATGGCGCTGTAGCAATGGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR GCA 90 bp ATTGCTACAGCGCCATTAACTGTAAGCATTTGCTCTATTCTGCAGCAAGGCCTATCCAGTTTGCGTCGATaGCGCTCCTCCCGGGCGCGC +
Preference number: 4 (lower is better)
Translates to: IATAPLTVSICSILQQGLSSLRR*RSSRAR
Trigger: GCGCGCCCGGGAGGAGCGGCATCGACGCAAACTGGA...TAGGCCTTGCTGCAGAATAGAGCAAATGCTTACAGTTAATGGCGCTGTAGCAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CCA 90 bp AACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTCCGCACAGGTCCCACGCCACAGTCTTACACCCTaGAGGTCGTTCTCTTGTGGA +
Preference number: 4 (lower is better)
Translates to: NATDVTEQSFGGSAQVPRHSLTP*RSFSCG
Trigger: TCCACAAGAGAACGACCTCCAGGGTGTAAGACTGTG...GCGTGGGACCTGTGCGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CCA 90 bp AGCCCTCCTGCTCCTGTACTGTACAGCCCTGGCTGGCTTCAGACGGTTTCGCTTCATAGAAGTCATCCCTaGCCTGAGCAAAATCCACGT +
Preference number: 4 (lower is better)
Translates to: SPPAPVLYSPGWLQTVSLHRSHP*PEQNPR
Trigger: ACGTGGATTTTGCTCAGGCCAGGGATGACTTCTATG...AAGCGAAACCGTCTGAAGCCAGCCAGGGCTGTACAGTACAGGAGCAGGAGGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CCA 90 bp AGCCCTCCTGCTCCTGTACTGTACAGCCCTGGCTGGCTTCAGACGGTTTCGCTTTCTATGTTCTTGCGCTaGGCTTTCGAGAAATGGTCC +
Preference number: 4 (lower is better)
Translates to: SPPAPVLYSPGWLQTVSLSMFLR*AFEKWS
Trigger: GGACCATTTCTCGAAAGCCCAGCGCAAGAACATAGA...AAGCGAAACCGTCTGAAGCCAGCCAGGGCTGTACAGTACAGGAGCAGGAGGGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR TCA 90 bp GAAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTCCGCACAGGTCCCAGCTGTTGGTCCTTGGTaGGGTTTTCTTCTGTCCGGA +
Preference number: 4 (lower is better)
Translates to: ENATDVTEQSFGGSAQVPAVGPW*GFLLSG
Trigger: TCCGGACAGAAGAAAACCTCACCAAGGACCAACAGC...TGGGACCTGTGCGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR GCA 90 bp TGTAAGGAACTGGTACACAATTACATTTCCACGCACATGAAAACGCCACAGATGTCCAGTTTGCGTCGATaGCGCTCCTCCCGGGCGCGC +
Preference number: 4 (lower is better)
Translates to: CKELVHNYISTHMKTPQMSSLRR*RSSRAR
Trigger: GCGCGCCCGGGAGGAGCGGCATCGACGCAAACTGGA...CATCTGTGGCGTTTTCATGTGCGTGGAAATGTAATTGTGTACCAGTTCCTTACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR GCA 90 bp AGCCCTCCTGCTCCTGTACTGTACAGCCCTGGCTGGCTTCAGACGGTTTCGCTTATCTTAGAGTCCAGCTaGTGCATGTATGACCACAGA +
Preference number: 4 (lower is better)
Translates to: SPPAPVLYSPGWLQTVSLILESS*CMYDHR
Trigger: TCTGTGGTCATACATGCAGCAGCTGGACTCTAAGAT...AAGCGAAACCGTCTGAAGCCAGCCAGGGCTGTACAGTACAGGAGCAGGAGGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CCA 90 bp CCTCCTGCTCCTGTACTGTACAGCCCTGGCTGGCTTCAGACGGTTTCGCTTCCATCTTGTGGAAGGAGGTaGAAGATTTGGATTTTGGGG +
Preference number: 4 (lower is better)
Translates to: PPAPVLYSPGWLQTVSLPSCGRR*KIWILG
Trigger: CCCCAAAATCCAAATCTTCCACCTCCTTCCACAAGA...TGGAAGCGAAACCGTCTGAAGCCAGCCAGGGCTGTACAGTACAGGAGCAGGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CCA 90 bp CATGAAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTCCGCACAGGTCTCAGCTCCTCCTGGATaGCCAGCAATTGCTGCTGCA +
Preference number: 4 (lower is better)
Translates to: HENATDVTEQSFGGSAQVSAPPG*PAIAAA
Trigger: TGCAGCAGCAATTGCTGGCCATCCAGGAGGAGCTGA...GACCTGTGCGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CCA 90 bp AAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTCCGCACAGGTCCCACTTGTTCAGCTCCTCCTaGATGGCCAGCAATTGCTGC +
Preference number: 4 (lower is better)
Translates to: KTPQMSLNKALVAPHRSHLFSSS*MASNCC
Trigger: GCAGCAATTGCTGGCCATCCAGGAGGAGCTGAACAA...GTGGGACCTGTGCGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
3UTR CAA 72 bp TGCTCCTCCTTTGCCTGCTCCAATTCCGACTTTTTGTaGTTCAGCTCCTCCTGGATGGCCAGCAATTGCTGC +
Preference number: 4 (lower is better)
Translates to: CSSFACSNSDFL*FSSSWMASNCC
Trigger: GCAGCAATTGCTGGCCATCCAGGAGGAGCTGAACAACAAAAAGTCGGAATTGGAGCAGGCAAAGGAGGAGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR CAA 72 bp ATTGATTTCCTGCTCCTGGAGGACTTTCAGCAACGCTaGCGTGTGAGACTGCTCCTCCTTTGCCTGCTCCAA +
Preference number: 4 (lower is better)
Translates to: IDFLLLEDFQQR*RVRLLLLCLLQ
Trigger: TTGGAGCAGGCAAAGGAGGAGCAGTCTCACACGCAAGCGTTGCTGAAAGTCCTCCAGGAGCAGGAAATCAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
3UTR CAA 72 bp TCTCGGTCCTGGTTAACCAACGCGACCGTCAACACATaGATTTCCTGCTCCTGGAGGACTTTCAGCAACGCT +
Preference number: 4 (lower is better)
Translates to: SRSWLTNATVNT*ISCSWRTFSNA
Trigger: AGCGTTGCTGAAAGTCCTCCAGGAGCAGGAAATCAATGTGTTGACGGTCGCGTTGGTTAACCAGGACCGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
CDS-3UTR TCA 90 bp AACTGTAGCCTGGCAACCACCATTGCTACAGCGCCATTAACTGTAAGCATTTGCATGAGCTGCTCGCTTTaGGCGTTCCGGAGCTCCTCA +
Preference number: 4 (lower is better)
Translates to: NCSLATTIATAPLTVSICMSCSL*AFRSSS
Trigger: TGAGGAGCTCCGGAACGCTCAAAGCGAGCAGCTCAT...GCAAATGCTTACAGTTAATGGCGCTGTAGCAATGGTGGTTGCCAGGCTACAGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR GCA 90 bp GAAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTCCGCACAGGTCCCATGGTATCTAGGGCTATaGTCCCCAAACCATCAGCTG +
Preference number: 4 (lower is better)
Translates to: ENATDVTEQSFGGSAQVPWYLGL*SPNHQL
Trigger: CAGCTGATGGTTTGGGGAGCATAGCCCTAGATACCA...TGGGACCTGTGCGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR GCA 90 bp CATGAAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTCCGCACAGGTCTGCTGCTGCATGCCTTaGATGGTTTGCTGCAGGAAC +
Preference number: 4 (lower is better)
Translates to: HENATDVTEQSFGGSAQVCCCMP*MVCCRN
Trigger: GTTCCTGCAGCAAACCATGCAAGGCATGCAGCAGCA...GACCTGTGCGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTCATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR GCA 90 bp GAAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTCCGCACAGGTCCCAAGACTGCTCCTCCTTTaGCTGCTCCAATTCCGACTT +
Preference number: 4 (lower is better)
Translates to: ENATDVTEQSFGGSAQVPRLLLL*LLQFRL
Trigger: AAGTCGGAATTGGAGCAGGCAAAGGAGGAGCAGTCT...TGGGACCTGTGCGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CCA 90 bp AAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTCCGCACAGGTCCCACACGGACATGTTGAGCTaGGTGGTATCTAGGGCTATG +
Preference number: 4 (lower is better)
Translates to: KTPQMSLNKALVAPHRSHTDMLS*VVSRAM
Trigger: CATAGCCCTAGATACCACCCAGCTCAACATGTCCGT...GTGGGACCTGTGCGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CCA 90 bp TGTTTGAACATCCGTGGCAGCCTCATCAGAAGCATTTCAATTTCATTGGCGGATGACAGCCACTTCCGTTaGGGGTGGGGGTGGTACCAG +
Preference number: 4 (lower is better)
Translates to: CLNIRGSLIRSISISLADDSHFR*GWGWYQ
Trigger: CTGGTACCACCCCCACCCCCAACGGAAGTGGCTGTC...ATCCGCCAATGAAATTGAAATGCTTCTGATGAGGCTGCCACGGATGTTCAAACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
CDS-3UTR TCA 90 bp TGCTACAGCGCCATTAACTGTAAGCATTTGCTCTATTCTGCAGCAAGGCCTAGTATGAGCTGCTCGCTTTaGGCGTTCCGGAGCTCCTCA +
Preference number: 4 (lower is better)
Translates to: CYSAINCKHLLYSAARPSMSCSL*AFRSSS
Trigger: TGAGGAGCTCCGGAACGCTCAAAGCGAGCAGCTCAT...ACTAGGCCTTGCTGCAGAATAGAGCAAATGCTTACAGTTAATGGCGCTGTAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR GCA 90 bp CATGAAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTCCGCACAGGTCTGGTATCTAGGGCTATaGTCCCCAAACCATCAGCTG +
Preference number: 4 (lower is better)
Translates to: HENATDVTEQSFGGSAQVWYLGL*SPNHQL
Trigger: CAGCTGATGGTTTGGGGAGCATAGCCCTAGATACCA...GACCTGTGCGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR GCA 90 bp TGCTACAGCGCCATTAACTGTAAGCATTTGCTCTATTCTGCAGCAAGGCCTAGTTGTCCTCTTCCAGTTTaGGTCGATGCCGCTCCTCCC +
Preference number: 4 (lower is better)
Translates to: CYSAINCKHLLYSAARPSCPLPV*VDAAPP
Trigger: GGGAGGAGCGGCATCGACGCAAACTGGAAGAGGACA...ACTAGGCCTTGCTGCAGAATAGAGCAAATGCTTACAGTTAATGGCGCTGTAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR GCA 90 bp TGCTACAGCGCCATTAACTGTAAGCATTTGCTCTATTCTGCAGCAAGGCCTAGTGGAGTAGAACTGGTTTaGCGAGCGCCGGTTCACCTC +
Preference number: 4 (lower is better)
Translates to: CYSAINCKHLLYSAARPSGVELV*RAPVHL
Trigger: GAGGTGAACCGGCGCTCGGCAAACCAGTTCTACTCC...ACTAGGCCTTGCTGCAGAATAGAGCAAATGCTTACAGTTAATGGCGCTGTAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR GCA 90 bp GAAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTCCGCACAGGTCCCAATGCCTTGCATGGTTTaGTGCAGGAACTGTAGCTGT +
Preference number: 4 (lower is better)
Translates to: ENATDVTEQSFGGSAQVPMPCMV*CRNCSC
Trigger: ACAGCTACAGTTCCTGCAGCAAACCATGCAAGGCAT...TGGGACCTGTGCGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR GCA 90 bp GAAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTCCGCACAGGTCCCACACATTGATTTCATTTaGATCCTCGTGGCTGTGGCC +
Preference number: 4 (lower is better)
Translates to: ENATDVTEQSFGGSAQVPHIDFI*ILVAVA
Trigger: GGCCACAGCCACGAGGATGCAAATGAAATCAATGTG...TGGGACCTGTGCGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CCA 90 bp CACCATTGCTACAGCGCCATTAACTGTAAGCATTTGCTCTATTCTGCAGCAAGGCATCATGTTGAGGCCTaGATCGAAGCCCGGCACGCA +
Preference number: 4 (lower is better)
Translates to: HHCYSAINCKHLLYSAARHHVEA*IEARHA
Trigger: TGCGTGCCGGGCTTCGATCCAGGCCTCAACATGATG...CCTTGCTGCAGAATAGAGCAAATGCTTACAGTTAATGGCGCTGTAGCAATGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CCA 90 bp AATTGCTGCTGCATGCCTTGCATGGTTTGCTGCAGGAACTGTAGCTGTTGGTCCCACAGTCTTACACCCTaGAGGTCGTTCTCTTGTGGA +
Preference number: 4 (lower is better)
Translates to: NCCCMPCMVCCRNCSCWSHSLTP*RSFSCG
Trigger: TCCACAAGAGAACGACCTCCAGGGTGTAAGACTGTG...GGACCAACAGCTACAGTTCCTGCAGCAAACCATGCAAGGCATGCAGCAGCAATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
CDS-3UTR GCA 90 bp AGCGCCATTAACTGTAAGCATTTGCTCTATTCTGCAGCAAGGCCTAGTTTGAGAGGAGTAGAACTGGTTTaGCGAGCGCCGGTTCACCTC +
Preference number: 4 (lower is better)
Translates to: SAINCKHLLYSAARPSLRGVELV*RAPVHL
Trigger: GAGGTGAACCGGCGCTCGGCAAACCAGTTCTACTCC...TCTCAAACTAGGCCTTGCTGCAGAATAGAGCAAATGCTTACAGTTAATGGCGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR GCA 90 bp AACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTCCGCACAGGTCCCACGCAAATGTCTATGTTCTTaGGCTGGGCTTTCGAGAAAT +
Preference number: 4 (lower is better)
Translates to: NATDVTEQSFGGSAQVPRKCLCS*AGLSRN
Trigger: ATTTCTCGAAAGCCCAGCGCAAGAACATAGACATTT...GCGTGGGACCTGTGCGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR GCA 90 bp CATGAAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTCCGCACAGGTCTGCTCCTCCTTTGCCTaGTCCAATTCCGACTTTTTG +
Preference number: 4 (lower is better)
Translates to: HENATDVTEQSFGGSAQVCSSFA*SNSDFL
Trigger: CAAAAAGTCGGAATTGGAGCAGGCAAAGGAGGAGCA...GACCTGTGCGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTCATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR GCA 90 bp CATTTAATGTTGTCAGCTATACATTACATACATAACTGTAGCCTGGCAACCACCGCCAGGGCAGCAGAATaGAAGCCACGATCCGCCGGG +
Preference number: 4 (lower is better)
Translates to: HLMLSAIHYIHNCSLATTARAAE*KPRSAG
Trigger: CCCGGCGGATCGTGGCTTGCATTCTGCTGCCCTGGC...GGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAGCTGACAACATTAAATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227662.2
CDS-3UTR CCA 90 bp ATGTTGTCAGCTATACATTACATACATAACTGTAGCCTGGCAACCACCATTGCTGACAGCCACTTCCGTTaGGGGTGGGGGTGGTACCAG +
Preference number: 4 (lower is better)
Translates to: MLSAIHYIHNCSLATTIADSHFR*GWGWYQ
Trigger: CTGGTACCACCCCCACCCCCAACGGAAGTGGCTGTC...AGCAATGGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAGCTGACAACAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CCA 90 bp AAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTCCGCACAGGTCCCACTCTTGTGGAAGGAGGTaGAAGATTTGGATTTTGGGG +
Preference number: 4 (lower is better)
Translates to: KTPQMSLNKALVAPHRSHSCGRR*KIWILG
Trigger: CCCCAAAATCCAAATCTTCCACCTCCTTCCACAAGA...GTGGGACCTGTGCGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CCA 90 bp AAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTCCGCACAGGTCCCACTCCATTTCCTGCTCGTaGGTAGCCTTTTCATTCATG +
Preference number: 4 (lower is better)
Translates to: KTPQMSLNKALVAPHRSHSISCS*VAFSFM
Trigger: CATGAATGAAAAGGCTACCCACGAGCAGGAAATGGA...GTGGGACCTGTGCGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CCA 90 bp AAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTCCGCACAGGTCCCACTGGGCTTTCGAGAAATaGTCCCAAGCTTTTTGTCTG +
Preference number: 4 (lower is better)
Translates to: KTPQMSLNKALVAPHRSHWAFEK*SQAFCL
Trigger: CAGACAAAAAGCTTGGGACCATTTCTCGAAAGCCCA...GTGGGACCTGTGCGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CCA 90 bp CATGAAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTCCGCACAGGTCCTGTTTGAACATCCGTaGCAGCCTCATCAGAAGCAT +
Preference number: 4 (lower is better)
Translates to: HENATDVTEQSFGGSAQVLFEHP*QPHQKH
Trigger: ATGCTTCTGATGAGGCTGCCACGGATGTTCAAACAG...GACCTGTGCGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
3UTR CAA 72 bp TTCTCTAGCGTCGCTCCCACACCAGTGAATTCCTGTTaGAACATCCGTGGCAGCCTCATCAGAAGCATTTCA +
Preference number: 4 (lower is better)
Translates to: FSSVAPTPVNSC*NIRGSLIRSIS
Trigger: TGAAATGCTTCTGATGAGGCTGCCACGGATGTTCAAACAGGAATTCACTGGTGTGGGAGCGACGCTAGAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
CDS-3UTR TCA 90 bp CATTTAATGTTGTCAGCTATACATTACATACATAACTGTAGCCTGGCAACCACCCACGGCGGATGCCCATaGGCTGCTCGCTTTGAGCGT +
Preference number: 4 (lower is better)
Translates to: HLMLSAIHYIHNCSLATTHGGCP*AARFER
Trigger: ACGCTCAAAGCGAGCAGCTCATGGGCATCCGCCGTG...GGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAGCTGACAACATTAAATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CCA 90 bp TGTCAGCTATACATTACATACATAACTGTAGCCTGGCAACCACCATTGCTACAGTGCGCACGTGGCTGTTaGCCGACTGAACCATGGAGT +
Preference number: 4 (lower is better)
Translates to: CQLYITYITVAWQPPLLQCARGC*PTEPWS
Trigger: ACTCCATGGTTCAGTCGGCCAACAGCCACGTGCGCA...CTGTAGCAATGGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAGCTGACA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CCA 90 bp TCCACGCACATGAAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTCCGTCCATTTCCTGCTCGTaGGTAGCCTTTTCATTCATG +
Preference number: 4 (lower is better)
Translates to: STHMKTPQMSLNKALVAPSISCS*VAFSFM
Trigger: CATGAATGAAAAGGCTACCCACGAGCAGGAAATGGA...CGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTCATGTGCGTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CCA 90 bp ATTTCCACGCACATGAAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTTCATTTGCATCCTCGTaGCTGTGGCCATTCGTCTCC +
Preference number: 4 (lower is better)
Translates to: ISTHMKTPQMSLNKALVASFASS*LWPFVS
Trigger: GGAGACGAATGGCCACAGCCACGAGGATGCAAATGA...AGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTCATGTGCGTGGAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR TCA 90 bp ATTGCTACAGCGCCATTAACTGTAAGCATTTGCTCTATTCTGCAGCAAGGCCTAGCTGTTGGTCCTTGGTaGGGTTTTCTTCTGTCCGGA +
Preference number: 4 (lower is better)
Translates to: IATAPLTVSICSILQQGLAVGPW*GFLLSG
Trigger: TCCGGACAGAAGAAAACCTCACCAAGGACCAACAGC...TAGGCCTTGCTGCAGAATAGAGCAAATGCTTACAGTTAATGGCGCTGTAGCAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR GCA 90 bp CTATACATTACATACATAACTGTAGCCTGGCAACCACCATTGCTACAGCGCCATCCCCAAACCATCAGCTaGTGCAGCCATCATCTGATG +
Preference number: 4 (lower is better)
Translates to: LYITYITVAWQPPLLQRHPQTIS*CSHHLM
Trigger: CATCAGATGATGGCTGCAGCAGCTGATGGTTTGGGG...ATGGCGCTGTAGCAATGGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR GCA 90 bp GTTACATACCAAGCACGGGACAGCAGCAGTTGTTCCTTCTATTTACATTTTATGGGAGTAGAACTGGTTTaGCGAGCGCCGGTTCACCTC +
Preference number: 4 (lower is better)
Translates to: VTYQARDSSSCSFYLHFMGVELV*RAPVHL
Trigger: GAGGTGAACCGGCGCTCGGCAAACCAGTTCTACTCC...CATAAAATGTAAATAGAAGGAACAACTGCTGCTGTCCCGTGCTTGGTATGTAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CCA 90 bp ATTTCCACGCACATGAAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTACGGACATGTTGAGCTaGGTGGTATCTAGGGCTATG +
Preference number: 4 (lower is better)
Translates to: ISTHMKTPQMSLNKALVATDMLS*VVSRAM
Trigger: CATAGCCCTAGATACCACCCAGCTCAACATGTCCGT...AGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTCATGTGCGTGGAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CCA 90 bp TCAGCAGGGCCTCCTTCTCAGATTTCAAACCTTGGCTTCTCTTTTCAGTGTTGTACGGACATGTTGAGCTaGGTGGTATCTAGGGCTATG +
Preference number: 4 (lower is better)
Translates to: SAGPPSQISNLGFSFQCCTDMLS*VVSRAM
Trigger: CATAGCCCTAGATACCACCCAGCTCAACATGTCCGT...ACAACACTGAAAAGAGAAGCCAAGGTTTGAAATCTGAGAAGGAGGCCCTGCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
CDS-3UTR CCA 90 bp ATTAACTGTAAGCATTTGCTCTATTCTGCAGCAAGGCCTAGTTTGAGATTTTGTGACAGCCACTTCCGTTaGGGGTGGGGGTGGTACCAG +
Preference number: 4 (lower is better)
Translates to: INCKHLLYSAARPSLRFCDSHFR*GWGWYQ
Trigger: CTGGTACCACCCCCACCCCCAACGGAAGTGGCTGTC...ACAAAATCTCAAACTAGGCCTTGCTGCAGAATAGAGCAAATGCTTACAGTTAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CCA 90 bp TGTAAGGAACTGGTACACAATTACATTTCCACGCACATGAAAACGCCACAGATGTCAGCTCCTCCTGGATaGCCAGCAATTGCTGCTGCA +
Preference number: 4 (lower is better)
Translates to: CKELVHNYISTHMKTPQMSAPPG*PAIAAA
Trigger: TGCAGCAGCAATTGCTGGCCATCCAGGAGGAGCTGA...CATCTGTGGCGTTTTCATGTGCGTGGAAATGTAATTGTGTACCAGTTCCTTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR TCA 90 bp CAGCTATACATTACATACATAACTGTAGCCTGGCAACCACCATTGCTACAGCGCAGTGGATTATTTCCTTaGCGACAGCCACTTCCGTTG +
Preference number: 4 (lower is better)
Translates to: QLYITYITVAWQPPLLQRSGLFP*RQPLPL
Trigger: CAACGGAAGTGGCTGTCGTCAAGGAAATAATCCACT...GCGCTGTAGCAATGGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAGCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR GCA 90 bp TGTCAGCTATACATTACATACATAACTGTAGCCTGGCAACCACCATTGCTACAGCCCCAAACCATCAGCTaGTGCAGCCATCATCTGATG +
Preference number: 4 (lower is better)
Translates to: CQLYITYITVAWQPPLLQPQTIS*CSHHLM
Trigger: CATCAGATGATGGCTGCAGCAGCTGATGGTTTGGGG...CTGTAGCAATGGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAGCTGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR GCA 90 bp TCAGCAGGGCCTCCTTCTCAGATTTCAAACCTTGGCTTCTCTTTTCAGTGTTGTCGCGCATCCTTTGCTTaGATTCCCACTCATAGAAGT +
Preference number: 4 (lower is better)
Translates to: SAGPPSQISNLGFSFQCCRASFA*IPTHRS
Trigger: ACTTCTATGAGTGGGAATGCAAGCAAAGGATGCGCG...ACAACACTGAAAAGAGAAGCCAAGGTTTGAAATCTGAGAAGGAGGCCCTGCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
CDS-3UTR GCA 90 bp CATTTAATGTTGTCAGCTATACATTACATACATAACTGTAGCCTGGCAACCACCTGTCCTCTTCCAGTTTaGGTCGATGCCGCTCCTCCC +
Preference number: 4 (lower is better)
Translates to: HLMLSAIHYIHNCSLATTCPLPV*VDAAPP
Trigger: GGGAGGAGCGGCATCGACGCAAACTGGAAGAGGACA...GGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAGCTGACAACATTAAATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR GCA 90 bp AATGTTACATACCAAGCACGGGACAGCAGCAGTTGTTCCTTCTATTTACATTTTTGTCCTCTTCCAGTTTaGGTCGATGCCGCTCCTCCC +
Preference number: 4 (lower is better)
Translates to: NVTYQARDSSSCSFYLHFCPLPV*VDAAPP
Trigger: GGGAGGAGCGGCATCGACGCAAACTGGAAGAGGACA...AAAATGTAAATAGAAGGAACAACTGCTGCTGTCCCGTGCTTGGTATGTAACATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR GCA 90 bp AGCGCCATTAACTGTAAGCATTTGCTCTATTCTGCAGCAAGGCCTAGTTTGAGACCTTGCATGGTTTGCTaGAGGAACTGTAGCTGTTGG +
Preference number: 4 (lower is better)
Translates to: SAINCKHLLYSAARPSLRPCMVC*RNCSCW
Trigger: CCAACAGCTACAGTTCCTGCAGCAAACCATGCAAGG...TCTCAAACTAGGCCTTGCTGCAGAATAGAGCAAATGCTTACAGTTAATGGCGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR GCA 90 bp TGTAAGGAACTGGTACACAATTACATTTCCACGCACATGAAAACGCCACAGATGTGCTGCTGCATGCCTTaGATGGTTTGCTGCAGGAAC +
Preference number: 4 (lower is better)
Translates to: CKELVHNYISTHMKTPQMCCCMP*MVCCRN
Trigger: GTTCCTGCAGCAAACCATGCAAGGCATGCAGCAGCA...CATCTGTGGCGTTTTCATGTGCGTGGAAATGTAATTGTGTACCAGTTCCTTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CCA 90 bp TACATTTCCACGCACATGAAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGCACAGTCTTACACCCTaGAGGTCGTTCTCTTGTGGA +
Preference number: 4 (lower is better)
Translates to: YISTHMKTPQMSLNKALVHSLTP*RSFSCG
Trigger: TCCACAAGAGAACGACCTCCAGGGTGTAAGACTGTG...CACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTCATGTGCGTGGAAATGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CCA 90 bp CAGCTATACATTACATACATAACTGTAGCCTGGCAACCACCATTGCTACAGCGCCATAGAAGTCATCCCTaGCCTGAGCAAAATCCACGT +
Preference number: 4 (lower is better)
Translates to: QLYITYITVAWQPPLLQRHRSHP*PEQNPR
Trigger: ACGTGGATTTTGCTCAGGCCAGGGATGACTTCTATG...GCGCTGTAGCAATGGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CCA 90 bp TGTAAGGAACTGGTACACAATTACATTTCCACGCACATGAAAACGCCACAGATGTGGCCGACTGAACCATaGAGTAGAACTGGTTTGCCG +
Preference number: 4 (lower is better)
Translates to: CKELVHNYISTHMKTPQMWPTEP*SRTGLP
Trigger: CGGCAAACCAGTTCTACTCCATGGTTCAGTCGGCCA...CATCTGTGGCGTTTTCATGTGCGTGGAAATGTAATTGTGTACCAGTTCCTTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CCA 90 bp AACTGTAGCCTGGCAACCACCATTGCTACAGCGCCATTAACTGTAAGCATTTGCTCCATTTCCTGCTCGTaGGTAGCCTTTTCATTCATG +
Preference number: 4 (lower is better)
Translates to: NCSLATTIATAPLTVSICSISCS*VAFSFM
Trigger: CATGAATGAAAAGGCTACCCACGAGCAGGAAATGGA...GCAAATGCTTACAGTTAATGGCGCTGTAGCAATGGTGGTTGCCAGGCTACAGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CCA 90 bp TGTCAGCTATACATTACATACATAACTGTAGCCTGGCAACCACCATTGCTACAGTTGTTCAGCTCCTCCTaGATGGCCAGCAATTGCTGC +
Preference number: 4 (lower is better)
Translates to: CQLYITYITVAWQPPLLQLFSSS*MASNCC
Trigger: GCAGCAATTGCTGGCCATCCAGGAGGAGCTGAACAA...CTGTAGCAATGGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAGCTGACA
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CCA 90 bp TGTAAGGAACTGGTACACAATTACATTTCCACGCACATGAAAACGCCACAGATGTCATTTGCATCCTCGTaGCTGTGGCCATTCGTCTCC +
Preference number: 4 (lower is better)
Translates to: CKELVHNYISTHMKTPQMSFASS*LWPFVS
Trigger: GGAGACGAATGGCCACAGCCACGAGGATGCAAATGA...CATCTGTGGCGTTTTCATGTGCGTGGAAATGTAATTGTGTACCAGTTCCTTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR TCA 90 bp CATTTAATGTTGTCAGCTATACATTACATACATAACTGTAGCCTGGCAACCACCTGTCATTCTCCTCTTTaGGGGCGTAGGCCTGAGCAG +
Preference number: 4 (lower is better)
Translates to: HLMLSAIHYIHNCSLATTCHSPL*GRRPEQ
Trigger: CTGCTCAGGCCTACGCCCTCAAAGAGGAGAATGACA...GGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAGCTGACAACATTAAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR TCA 90 bp TACATACCAAGCACGGGACAGCAGCAGTTGTTCCTTCTATTTACATTTTATGAATGTCATTCTCCTCTTTaGGGGCGTAGGCCTGAGCAG +
Preference number: 4 (lower is better)
Translates to: YIPSTGQQQLFLLFTFYECHSPL*GRRPEQ
Trigger: CTGCTCAGGCCTACGCCCTCAAAGAGGAGAATGACA...TTCATAAAATGTAAATAGAAGGAACAACTGCTGCTGTCCCGTGCTTGGTATGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227662.2
CDS-3UTR GCA 90 bp TGTAAGGAACTGGTACACAATTACATTTCCACGCACATGAAAACGCCACAGATGCGGAGCTCCTCAGAGTaGTTTCGCCAAATGTCTATG +
Preference number: 4 (lower is better)
Translates to: CKELVHNYISTHMKTPQMRSSSE*FRQMSM
Trigger: CATAGACATTTGGCGAAAGCACTCTGAGGAGCTCCG...CATCTGTGGCGTTTTCATGTGCGTGGAAATGTAATTGTGTACCAGTTCCTTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR GCA 90 bp TGTAAGGAACTGGTACACAATTACATTTCCACGCACATGAAAACGCCACAGATGCCTTGCATGGTTTGCTaGAGGAACTGTAGCTGTTGG +
Preference number: 4 (lower is better)
Translates to: CKELVHNYISTHMKTPQMPCMVC*RNCSCW
Trigger: CCAACAGCTACAGTTCCTGCAGCAAACCATGCAAGG...CATCTGTGGCGTTTTCATGTGCGTGGAAATGTAATTGTGTACCAGTTCCTTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR GCA 90 bp CTATACATTACATACATAACTGTAGCCTGGCAACCACCATTGCTACAGCGCCATATGCCTTGCATGGTTTaGTGCAGGAACTGTAGCTGT +
Preference number: 4 (lower is better)
Translates to: LYITYITVAWQPPLLQRHMPCMV*CRNCSC
Trigger: ACAGCTACAGTTCCTGCAGCAAACCATGCAAGGCAT...ATGGCGCTGTAGCAATGGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR GCA 90 bp CTATACATTACATACATAACTGTAGCCTGGCAACCACCATTGCTACAGCGCCATTGCTCCTCCTTTGCCTaGTCCAATTCCGACTTTTTG +
Preference number: 4 (lower is better)
Translates to: LYITYITVAWQPPLLQRHCSSFA*SNSDFL
Trigger: CAAAAAGTCGGAATTGGAGCAGGCAAAGGAGGAGCA...ATGGCGCTGTAGCAATGGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR GCA 90 bp TACATTTCCACGCACATGAAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGCACATTGATTTCATTTaGATCCTCGTGGCTGTGGCC +
Preference number: 4 (lower is better)
Translates to: YISTHMKTPQMSLNKALVHIDFI*ILVAVA
Trigger: GGCCACAGCCACGAGGATGCAAATGAAATCAATGTG...CACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTCATGTGCGTGGAAATGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CCA 90 bp ATTGCTACAGCGCCATTAACTGTAAGCATTTGCTCTATTCTGCAGCAAGGCCTACATAGAAGTCATCCCTaGCCTGAGCAAAATCCACGT +
Preference number: 4 (lower is better)
Translates to: IATAPLTVSICSILQQGLHRSHP*PEQNPR
Trigger: ACGTGGATTTTGCTCAGGCCAGGGATGACTTCTATG...TAGGCCTTGCTGCAGAATAGAGCAAATGCTTACAGTTAATGGCGCTGTAGCAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR TCA 90 bp TGTAAGGAACTGGTACACAATTACATTTCCACGCACATGAAAACGCCACAGATGAGTGGATTATTTCCTTaGCGACAGCCACTTCCGTTG +
Preference number: 4 (lower is better)
Translates to: CKELVHNYISTHMKTPQMSGLFP*RQPLPL
Trigger: CAACGGAAGTGGCTGTCGTCAAGGAAATAATCCACT...CATCTGTGGCGTTTTCATGTGCGTGGAAATGTAATTGTGTACCAGTTCCTTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR GCA 90 bp ACATACCAAGCACGGGACAGCAGCAGTTGTTCCTTCTATTTACATTTTATGAAACCCCAAACCATCAGCTaGTGCAGCCATCATCTGATG +
Preference number: 4 (lower is better)
Translates to: TYQARDSSSCSFYLHFMKPQTIS*CSHHLM
Trigger: CATCAGATGATGGCTGCAGCAGCTGATGGTTTGGGG...TTTCATAAAATGTAAATAGAAGGAACAACTGCTGCTGTCCCGTGCTTGGTATGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR GCA 90 bp ATTTCCACGCACATGAAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTAATCCTTTTTATCCGTaGTCGACCCTAATCGCATTC +
Preference number: 4 (lower is better)
Translates to: ISTHMKTPQMSLNKALVANPFYP*STLIAF
Trigger: GAATGCGATTAGGGTCGAGCACGGATAAAAAGGATT...AGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTCATGTGCGTGGAAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR GCA 90 bp TATGATGCCTATCAGCAGGGCCTCCTTCTCAGATTTCAAACCTTGGCTTCTCTTAATCCTTTTTATCCGTaGTCGACCCTAATCGCATTC +
Preference number: 4 (lower is better)
Translates to: YDAYQQGLLLRFQTLASLNPFYP*STLIAF
Trigger: GAATGCGATTAGGGTCGAGCACGGATAAAAAGGATT...AAGAGAAGCCAAGGTTTGAAATCTGAGAAGGAGGCCCTGCTGATAGGCATCATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227831.2
CDS-3UTR GCA 90 bp TTACATTTCCACGCACATGAAAACGCCACAGATGTCACTGAACAAAGCTTTGGTCGCGCATCCTTTGCTTaGATTCCCACTCATAGAAGT +
Preference number: 4 (lower is better)
Translates to: LHFHAHENATDVTEQSFGRASFA*IPTHRS
Trigger: ACTTCTATGAGTGGGAATGCAAGCAAAGGATGCGCG...ACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTCATGTGCGTGGAAATGTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR GCA 90 bp TGTAAGCATTTGCTCTATTCTGCAGCAAGGCCTAGTTTGAGATTTTGTGATCATGCCAGCAATTGCTGCTaGATGCCTTGCATGGTTTGC +
Preference number: 4 (lower is better)
Translates to: CKHLLYSAARPSLRFCDHASNCC*MPCMVC
Trigger: GCAAACCATGCAAGGCATGCAGCAGCAATTGCTGGC...ATGATCACAAAATCTCAAACTAGGCCTTGCTGCAGAATAGAGCAAATGCTTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR GCA 90 bp CATTTAATGTTGTCAGCTATACATTACATACATAACTGTAGCCTGGCAACCACCGCCAGCAATTGCTGCTaGATGCCTTGCATGGTTTGC +
Preference number: 4 (lower is better)
Translates to: HLMLSAIHYIHNCSLATTASNCC*MPCMVC
Trigger: GCAAACCATGCAAGGCATGCAGCAGCAATTGCTGGC...GGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAGCTGACAACATTAAATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR GCA 90 bp ATGTTGTCAGCTATACATTACATACATAACTGTAGCCTGGCAACCACCATTGCTATGGCCAGCAATTGCTaGTGCATGCCTTGCATGGTT +
Preference number: 4 (lower is better)
Translates to: MLSAIHYIHNCSLATTIAMASNC*CMPCMV
Trigger: AACCATGCAAGGCATGCAGCAGCAATTGCTGGCCAT...AGCAATGGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAGCTGACAACAT
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CCA 90 bp CATTTAATGTTGTCAGCTATACATTACATACATAACTGTAGCCTGGCAACCACCTGGCCGACTGAACCATaGAGTAGAACTGGTTTGCCG +
Preference number: 4 (lower is better)
Translates to: HLMLSAIHYIHNCSLATTWPTEP*SRTGLP
Trigger: CGGCAAACCAGTTCTACTCCATGGTTCAGTCGGCCA...GGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAGCTGACAACATTAAATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CCA 90 bp CTATGCAGTCCATGTGAAAAGAATACGCGATGGAGAACCGTTACATTAGAAAAATGGCCGACTGAACCATaGAGTAGAACTGGTTTGCCG +
Preference number: 4 (lower is better)
Translates to: LCSPCEKNTRWRTVTLEKWPTEP*SRTGLP
Trigger: CGGCAAACCAGTTCTACTCCATGGTTCAGTCGGCCA...TTTTTCTAATGTAACGGTTCTCCATCGCGTATTCTTTTCACATGGACTGCATAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CCA 90 bp CTATACATTACATACATAACTGTAGCCTGGCAACCACCATTGCTACAGCGCCATAGGAACTGTAGCTGTTaGTCCTTGGTGAGGTTTTCT +
Preference number: 4 (lower is better)
Translates to: LYITYITVAWQPPLLQRHRNCSC*SLVRFS
Trigger: AGAAAACCTCACCAAGGACCAACAGCTACAGTTCCT...ATGGCGCTGTAGCAATGGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CCA 90 bp TACATTTCCACGCACATGAAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGAGGAACTGTAGCTGTTaGTCCTTGGTGAGGTTTTCT +
Preference number: 4 (lower is better)
Translates to: YISTHMKTPQMSLNKALVRNCSC*SLVRFS
Trigger: AGAAAACCTCACCAAGGACCAACAGCTACAGTTCCT...CACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTCATGTGCGTGGAAATGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CCA 90 bp GGAACTGGTACACAATTACATTTCCACGCACATGAAAACGCCACAGATGTCACTTCTCCACCAAGTCCTTaGTACCTTTTAACTGCTCCT +
Preference number: 4 (lower is better)
Translates to: GTGTQLHFHAHENATDVTSPPSP*YLLTAP
Trigger: AGGAGCAGTTAAAAGGTACCAAGGACTTGGTGGAGA...AGTGACATCTGTGGCGTTTTCATGTGCGTGGAAATGTAATTGTGTACCAGTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR TCA 90 bp TGTAAGGAACTGGTACACAATTACATTTCCACGCACATGAAAACGCCACAGATGCGACCGTCAACACATTaGTTTCATTTGCATCCTCGT +
Preference number: 4 (lower is better)
Translates to: CKELVHNYISTHMKTPQMRPSTH*FHLHPR
Trigger: ACGAGGATGCAAATGAAATCAATGTGTTGACGGTCG...CATCTGTGGCGTTTTCATGTGCGTGGAAATGTAATTGTGTACCAGTTCCTTACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR TCA 90 bp TTACATTTCCACGCACATGAAAACGCCACAGATGTCACTGAACAAAGCTTTGGTCGACCGTCAACACATTaGTTTCATTTGCATCCTCGT +
Preference number: 4 (lower is better)
Translates to: LHFHAHENATDVTEQSFGRPSTH*FHLHPR
Trigger: ACGAGGATGCAAATGAAATCAATGTGTTGACGGTCG...ACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTCATGTGCGTGGAAATGTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR TCA 90 bp CTATACATTACATACATAACTGTAGCCTGGCAACCACCATTGCTACAGCGCCATAACGTGAAGAAACGTTaGTATGATGCCTATCAGCAG +
Preference number: 4 (lower is better)
Translates to: LYITYITVAWQPPLLQRHNVKKR*YDAYQQ
Trigger: CTGCTGATAGGCATCATATCAACGTTTCTTCACGTT...ATGGCGCTGTAGCAATGGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR TCA 90 bp TACATTTCCACGCACATGAAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGCAGCTGCTGCATGTATaGCCACAGATACTCTATATT +
Preference number: 4 (lower is better)
Translates to: YISTHMKTPQMSLNKALVQLLHV*PQILYI
Trigger: AATATAGAGTATCTGTGGTCATACATGCAGCAGCTG...CACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTCATGTGCGTGGAAATGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR GCA 90 bp ATGTTGTCAGCTATACATTACATACATAACTGTAGCCTGGCAACCACCATTGCTCGCGCATCCTTTGCTTaGATTCCCACTCATAGAAGT +
Preference number: 4 (lower is better)
Translates to: MLSAIHYIHNCSLATTIARASFA*IPTHRS
Trigger: ACTTCTATGAGTGGGAATGCAAGCAAAGGATGCGCG...AGCAATGGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAGCTGACAACAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR GCA 90 bp AATGTTACATACCAAGCACGGGACAGCAGCAGTTGTTCCTTCTATTTACATTTTATGGCCAGCAATTGCTaGTGCATGCCTTGCATGGTT +
Preference number: 4 (lower is better)
Translates to: NVTYQARDSSSCSFYLHFMASNC*CMPCMV
Trigger: AACCATGCAAGGCATGCAGCAGCAATTGCTGGCCAT...AAAATGTAAATAGAAGGAACAACTGCTGCTGTCCCGTGCTTGGTATGTAACATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227662.2
CDS-3UTR GCA 90 bp TGTCAGCTATACATTACATACATAACTGTAGCCTGGCAACCACCATTGCTACAGTTAGAGTCCAGCTGCTaGATGTATGACCACAGATAC +
Preference number: 4 (lower is better)
Translates to: CQLYITYITVAWQPPLLQLESSC*MYDHRY
Trigger: GTATCTGTGGTCATACATGCAGCAGCTGGACTCTAA...CTGTAGCAATGGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAGCTGACA
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CCA 90 bp TACATACCAAGCACGGGACAGCAGCAGTTGTTCCTTCTATTTACATTTTATGAAGCTGCATGCCTTGCATaGTTTGCTGCAGGAACTGTA +
Preference number: 4 (lower is better)
Translates to: YIPSTGQQQLFLLFTFYEAACLA*FAAGTV
Trigger: TACAGTTCCTGCAGCAAACCATGCAAGGCATGCAGC...TTCATAAAATGTAAATAGAAGGAACAACTGCTGCTGTCCCGTGCTTGGTATGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227662.2
CDS-3UTR TCA 90 bp TGTAAGGAACTGGTACACAATTACATTTCCACGCACATGAAAACGCCACAGATGAACGTGAAGAAACGTTaGTATGATGCCTATCAGCAG +
Preference number: 4 (lower is better)
Translates to: CKELVHNYISTHMKTPQMNVKKR*YDAYQQ
Trigger: CTGCTGATAGGCATCATATCAACGTTTCTTCACGTT...CATCTGTGGCGTTTTCATGTGCGTGGAAATGTAATTGTGTACCAGTTCCTTACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR GCA 90 bp ATGTTGTCAGCTATACATTACATACATAACTGTAGCCTGGCAACCACCATTGCTTTAGAGTCCAGCTGCTaGATGTATGACCACAGATAC +
Preference number: 4 (lower is better)
Translates to: MLSAIHYIHNCSLATTIALESSC*MYDHRY
Trigger: GTATCTGTGGTCATACATGCAGCAGCTGGACTCTAA...AGCAATGGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAGCTGACAACAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CCA 90 bp GGAACTGGTACACAATTACATTTCCACGCACATGAAAACGCCACAGATGTCACTGTACAGCTTTTGCAGTaGATTATTTCCTTGACGACA +
Preference number: 4 (lower is better)
Translates to: GTGTQLHFHAHENATDVTVQLLQ*IISLTT
Trigger: TGTCGTCAAGGAAATAATCCACTGCAAAAGCTGTAC...AGTGACATCTGTGGCGTTTTCATGTGCGTGGAAATGTAATTGTGTACCAGTTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CCA 90 bp AGCGCCATTAACTGTAAGCATTTGCTCTATTCTGCAGCAAGGCCTAGTTTGAGAGTACAGCTTTTGCAGTaGATTATTTCCTTGACGACA +
Preference number: 4 (lower is better)
Translates to: SAINCKHLLYSAARPSLRVQLLQ*IISLTT
Trigger: TGTCGTCAAGGAAATAATCCACTGCAAAAGCTGTAC...TCTCAAACTAGGCCTTGCTGCAGAATAGAGCAAATGCTTACAGTTAATGGCGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CCA 90 bp CTATGCAGTCCATGTGAAAAGAATACGCGATGGAGAACCGTTACATTAGAAAAATCTATGTTCTTGCGCTaGGCTTTCGAGAAATGGTCC +
Preference number: 4 (lower is better)
Translates to: LCSPCEKNTRWRTVTLEKSMFLR*AFEKWS
Trigger: GGACCATTTCTCGAAAGCCCAGCGCAAGAACATAGA...TTTTTCTAATGTAACGGTTCTCCATCGCGTATTCTTTTCACATGGACTGCATAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000227662.2
CDS-3UTR CCA 90 bp GTTACATACCAAGCACGGGACAGCAGCAGTTGTTCCTTCTATTTACATTTTATGTCTCCACCAAGTCCTTaGTACCTTTTAACTGCTCCT +
Preference number: 4 (lower is better)
Translates to: VTYQARDSSSCSFYLHFMSPPSP*YLLTAP
Trigger: AGGAGCAGTTAAAAGGTACCAAGGACTTGGTGGAGA...CATAAAATGTAAATAGAAGGAACAACTGCTGCTGTCCCGTGCTTGGTATGTAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227662.2
CDS-3UTR CCA 90 bp CACCATTGCTACAGCGCCATTAACTGTAAGCATTTGCTCTATTCTGCAGCAAGGTCAGATTTCAAACCTTaGCTTCTCTTTTCAGTGTTG +
Preference number: 4 (lower is better)
Translates to: HHCYSAINCKHLLYSAARSDFKP*LLFSVL
Trigger: CAACACTGAAAAGAGAAGCCAAGGTTTGAAATCTGA...CCTTGCTGCAGAATAGAGCAAATGCTTACAGTTAATGGCGCTGTAGCAATGGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR GCA 90 bp TTACATTTCCACGCACATGAAAACGCCACAGATGTCACTGAACAAAGCTTTGGTAAATGTCTATGTTCTTaGGCTGGGCTTTCGAGAAAT +
Preference number: 4 (lower is better)
Translates to: LHFHAHENATDVTEQSFGKCLCS*AGLSRN
Trigger: ATTTCTCGAAAGCCCAGCGCAAGAACATAGACATTT...ACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTCATGTGCGTGGAAATGTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR GCA 90 bp ACATACCAAGCACGGGACAGCAGCAGTTGTTCCTTCTATTTACATTTTATGAAAATCTTAGAGTCCAGCTaGTGCATGTATGACCACAGA +
Preference number: 4 (lower is better)
Translates to: TYQARDSSSCSFYLHFMKILESS*CMYDHR
Trigger: TCTGTGGTCATACATGCAGCAGCTGGACTCTAAGAT...TTTCATAAAATGTAAATAGAAGGAACAACTGCTGCTGTCCCGTGCTTGGTATGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227662.2
CDS-3UTR CCA 90 bp TGTCAGCTATACATTACATACATAACTGTAGCCTGGCAACCACCATTGCTACAGGTACAGCTTTTGCAGTaGATTATTTCCTTGACGACA +
Preference number: 4 (lower is better)
Translates to: CQLYITYITVAWQPPLLQVQLLQ*IISLTT
Trigger: TGTCGTCAAGGAAATAATCCACTGCAAAAGCTGTAC...CTGTAGCAATGGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAGCTGACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CCA 90 bp AATGTTACATACCAAGCACGGGACAGCAGCAGTTGTTCCTTCTATTTACATTTTTCTTGTGGAAGGAGGTaGAAGATTTGGATTTTGGGG +
Preference number: 4 (lower is better)
Translates to: NVTYQARDSSSCSFYLHFSCGRR*KIWILG
Trigger: CCCCAAAATCCAAATCTTCCACCTCCTTCCACAAGA...AAAATGTAAATAGAAGGAACAACTGCTGCTGTCCCGTGCTTGGTATGTAACATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CCA 90 bp TGTAAGCATTTGCTCTATTCTGCAGCAAGGCCTAGTTTGAGATTTTGTGATCATTGGGCTTTCGAGAAATaGTCCCAAGCTTTTTGTCTG +
Preference number: 4 (lower is better)
Translates to: CKHLLYSAARPSLRFCDHWAFEK*SQAFCL
Trigger: CAGACAAAAAGCTTGGGACCATTTCTCGAAAGCCCA...ATGATCACAAAATCTCAAACTAGGCCTTGCTGCAGAATAGAGCAAATGCTTACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CCA 90 bp ATTAACTGTAAGCATTTGCTCTATTCTGCAGCAAGGCCTAGTTTGAGATTTTGTCTGTTTGAACATCCGTaGCAGCCTCATCAGAAGCAT +
Preference number: 4 (lower is better)
Translates to: INCKHLLYSAARPSLRFCLFEHP*QPHQKH
Trigger: ATGCTTCTGATGAGGCTGCCACGGATGTTCAAACAG...ACAAAATCTCAAACTAGGCCTTGCTGCAGAATAGAGCAAATGCTTACAGTTAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR GCA 90 bp TGTAAGCATTTGCTCTATTCTGCAGCAAGGCCTAGTTTGAGATTTTGTGATCATAATCCTTTTTATCCGTaGTCGACCCTAATCGCATTC +
Preference number: 4 (lower is better)
Translates to: CKHLLYSAARPSLRFCDHNPFYP*STLIAF
Trigger: GAATGCGATTAGGGTCGAGCACGGATAAAAAGGATT...ATGATCACAAAATCTCAAACTAGGCCTTGCTGCAGAATAGAGCAAATGCTTACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR TCA 90 bp ATTAACTGTAAGCATTTGCTCTATTCTGCAGCAAGGCCTAGTTTGAGATTTTGTCAGCTGCTGCATGTATaGCCACAGATACTCTATATT +
Preference number: 4 (lower is better)
Translates to: INCKHLLYSAARPSLRFCQLLHV*PQILYI
Trigger: AATATAGAGTATCTGTGGTCATACATGCAGCAGCTG...ACAAAATCTCAAACTAGGCCTTGCTGCAGAATAGAGCAAATGCTTACAGTTAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CCA 90 bp ATGTTGTCAGCTATACATTACATACATAACTGTAGCCTGGCAACCACCATTGCTTCAGATTTCAAACCTTaGCTTCTCTTTTCAGTGTTG +
Preference number: 4 (lower is better)
Translates to: MLSAIHYIHNCSLATTIASDFKP*LLFSVL
Trigger: CAACACTGAAAAGAGAAGCCAAGGTTTGAAATCTGA...AGCAATGGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAGCTGACAACAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS GCA 90 bp GGCGGCGAGGGAGGCCGCAGCCTGTCCTCTTCCAGTTTGCGTCGATaGCGCTCCTCCCGGGCGCGCATCCTTTGCTTGCATTCCCACTCA +
Preference number: 5 (lower is better)
Translates to: GGEGGRSLSSSSLRR*RSSRARILCLHSHS
Trigger: TGAGTGGGAATGCAAGCAAAGGATGCGCGCCCGGGAGGAGCGGCATCGACGCAAACTGGAAGAGGACAGGCTGCGGCCTCCCTCGCCGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS TCA 90 bp TCAGTTTGTCAGCCAGCAGGGCAGCTTCGTGCTCCGAGTAGTGCATaGTGGCCGGCGGCGAGGGAGGCCGCAGCCTGTCCTCTTCCAGTT +
Preference number: 5 (lower is better)
Translates to: SVCQPAGQLRAPSSA*WPAAREAAACPLPV
Trigger: AACTGGAAGAGGACAGGCTGCGGCCTCCCTCGCCGCCGGCCATCATGCACTACTCGGAGCACGAAGCTGCCCTGCTGGCTGACAAACTGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CAA 90 bp GAAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTCCGCACAGGTCCCACGACAGCCACTTCCGTaGGGGGTGGGGGTGGTACCA +
Preference number: 5 (lower is better)
Translates to: ENATDVTEQSFGGSAQVPRQPLP*GVGVVP
Trigger: TGGTACCACCCCCACCCCCAACGGAAGTGGCTGTCG...TGGGACCTGTGCGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS CCA 90 bp ATAGCTGTGGCCCAGGCTGTGGGATCGGTGACGGACATGTTGAGCTaGGTGGTATCTAGGGCTATGCTCCCCAAACCATCAGCTGCTGCA +
Preference number: 5 (lower is better)
Translates to: IAVAQAVGSVTDMLS*VVSRAMLPKPSAAA
Trigger: TGCAGCAGCTGATGGTTTGGGGAGCATAGCCCTAGATACCACCCAGCTCAACATGTCCGTCACCGATCCCACAGCCTGGGCCACAGCTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CAA 90 bp AGCCCTCCTGCTCCTGTACTGTACAGCCCTGGCTGGCTTCAGACGGTTTCGCTTTCGGTGACGGACATGTaGAGCTGGGTGGTATCTAGG +
Preference number: 5 (lower is better)
Translates to: SPPAPVLYSPGWLQTVSLSVTDM*SWVVSR
Trigger: CCTAGATACCACCCAGCTCAACATGTCCGTCACCGA...AAGCGAAACCGTCTGAAGCCAGCCAGGGCTGTACAGTACAGGAGCAGGAGGGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CAA 90 bp AACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTCCGCACAGGTCCCACGCTGGAGTAGAACTGGTTaGCCGAGCGCCGGTTCACCT +
Preference number: 5 (lower is better)
Translates to: NATDVTEQSFGGSAQVPRWSRTG*PSAGSP
Trigger: AGGTGAACCGGCGCTCGGCAAACCAGTTCTACTCCA...GCGTGGGACCTGTGCGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CAA 90 bp CCTCCTGCTCCTGTACTGTACAGCCCTGGCTGGCTTCAGACGGTTTCGCTTCCACTGGATGGCCAGCAATaGCTGCTGCATGCCTTGCAT +
Preference number: 5 (lower is better)
Translates to: PPAPVLYSPGWLQTVSLPLDGQQ*LLHALH
Trigger: ATGCAAGGCATGCAGCAGCAATTGCTGGCCATCCAG...TGGAAGCGAAACCGTCTGAAGCCAGCCAGGGCTGTACAGTACAGGAGCAGGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CAA 90 bp AGCCCTCCTGCTCCTGTACTGTACAGCCCTGGCTGGCTTCAGACGGTTTCGCTTCTGGAGGTCGTTCTCTaGTGGAAGGAGGTGGAAGAT +
Preference number: 5 (lower is better)
Translates to: SPPAPVLYSPGWLQTVSLLEVVL*WKEVED
Trigger: ATCTTCCACCTCCTTCCACAAGAGAACGACCTCCAG...AAGCGAAACCGTCTGAAGCCAGCCAGGGCTGTACAGTACAGGAGCAGGAGGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CAA 90 bp AACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTCCGCACAGGTCCCACGCATTCCAGTCATCATGTaGAGGCCTGGATCGAAGCCC +
Preference number: 5 (lower is better)
Translates to: NATDVTEQSFGGSAQVPRIPVIM*RPGSKP
Trigger: GGGCTTCGATCCAGGCCTCAACATGATGACTGGAAT...GCGTGGGACCTGTGCGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CAA 90 bp AAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTCCGCACAGGTCCCACCCGGGCGCGCATCCTTaGCTTGCATTCCCACTCATA +
Preference number: 5 (lower is better)
Translates to: KTPQMSLNKALVAPHRSHPGAHP*LAFPLI
Trigger: TATGAGTGGGAATGCAAGCAAAGGATGCGCGCCCGG...GTGGGACCTGTGCGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CAA 90 bp TCCACGCACATGAAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTCCGCTGTCCTCTTCCAGTTaGCGTCGATGCCGCTCCTCC +
Preference number: 5 (lower is better)
Translates to: STHMKTPQMSLNKALVAPLSSSS*RRCRSS
Trigger: GGAGGAGCGGCATCGACGCAAACTGGAAGAGGACAG...CGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTCATGTGCGTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CAA 90 bp AAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTCCGCACAGGTCCCACTGGAGTAGAACTGGTTaGCCGAGCGCCGGTTCACCT +
Preference number: 5 (lower is better)
Translates to: KTPQMSLNKALVAPHRSHWSRTG*PSAGSP
Trigger: AGGTGAACCGGCGCTCGGCAAACCAGTTCTACTCCA...GTGGGACCTGTGCGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CAA 90 bp CCTCCTGCTCCTGTACTGTACAGCCCTGGCTGGCTTCAGACGGTTTCGCTTCCATGTCTGGTAGAAGCGTaGAAAACGGCCACAATCTGC +
Preference number: 5 (lower is better)
Translates to: PPAPVLYSPGWLQTVSLPCLVEA*KTATIC
Trigger: GCAGATTGTGGCCGTTTTCAACGCTTCTACCAGACA...TGGAAGCGAAACCGTCTGAAGCCAGCCAGGGCTGTACAGTACAGGAGCAGGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CAA 90 bp CACCATTGCTACAGCGCCATTAACTGTAAGCATTTGCTCTATTCTGCAGCAAGGCGACAGCCACTTCCGTaGGGGGTGGGGGTGGTACCA +
Preference number: 5 (lower is better)
Translates to: HHCYSAINCKHLLYSAARRQPLP*GVGVVP
Trigger: TGGTACCACCCCCACCCCCAACGGAAGTGGCTGTCG...CCTTGCTGCAGAATAGAGCAAATGCTTACAGTTAATGGCGCTGTAGCAATGGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS CCA 90 bp CATTTGCATCCTCGTGGCTGTGGCCATTCGTCTCCACCAAGTCCTTaGTACCTTTTAACTGCTCCTGGAGGACTTTCAGCAACGCTTGCG +
Preference number: 5 (lower is better)
Translates to: HLHPRGCGHSSPPSP*YLLTAPGGLSATLA
Trigger: CGCAAGCGTTGCTGAAAGTCCTCCAGGAGCAGTTAAAAGGTACCAAGGACTTGGTGGAGACGAATGGCCACAGCCACGAGGATGCAAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CAA 90 bp AGCCCTCCTGCTCCTGTACTGTACAGCCCTGGCTGGCTTCAGACGGTTTCGCTTATGGTCCCAAGCTTTTaGTCTGGTAGAAGCGTTGAA +
Preference number: 5 (lower is better)
Translates to: SPPAPVLYSPGWLQTVSLMVPSF*SGRSVE
Trigger: TTCAACGCTTCTACCAGACAAAAAGCTTGGGACCAT...AAGCGAAACCGTCTGAAGCCAGCCAGGGCTGTACAGTACAGGAGCAGGAGGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CAA 90 bp TGTAAGGAACTGGTACACAATTACATTTCCACGCACATGAAAACGCCACAGATGCGACAGCCACTTCCGTaGGGGGTGGGGGTGGTACCA +
Preference number: 5 (lower is better)
Translates to: CKELVHNYISTHMKTPQMRQPLP*GVGVVP
Trigger: TGGTACCACCCCCACCCCCAACGGAAGTGGCTGTCG...CATCTGTGGCGTTTTCATGTGCGTGGAAATGTAATTGTGTACCAGTTCCTTACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CAA 90 bp AAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTCCGCACAGGTCCCACGTCTCCACCAAGTCCTaGGTACCTTTTAACTGCTCC +
Preference number: 5 (lower is better)
Translates to: KTPQMSLNKALVAPHRSHVSTKS*VPFNCS
Trigger: GGAGCAGTTAAAAGGTACCAAGGACTTGGTGGAGAC...GTGGGACCTGTGCGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CAA 90 bp CATGAAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTCCGCACAGGTCCCAGTGAATTCCTGTTaGAACATCCGTGGCAGCCTC +
Preference number: 5 (lower is better)
Translates to: HENATDVTEQSFGGSAQVPVNSC*NIRGSL
Trigger: GAGGCTGCCACGGATGTTCAAACAGGAATTCACTGG...GACCTGTGCGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTCATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS GCA 90 bp CCTGAGCAAAATCCACGTGCAGGCGGCCGGAATCCTTTTTATCCGTaGTCGACCCTAATCGCATTCTGTAACCAGAGAGGTAAATGGCTT +
Preference number: 5 (lower is better)
Translates to: PEQNPRAGGRNPFYP*STLIAFCNQRGKWL
Trigger: AAGCCATTTACCTCTCTGGTTACAGAATGCGATTAGGGTCGAGCACGGATAAAAAGGATTCCGGCCGCCTGCACGTGGATTTTGCTCAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS CCA 90 bp CGGAGCTCCTCAGAGTGCTTTCGCCAAATGTCTATGTTCTTGCGCTaGGCTTTCGAGAAATGGTCCCAAGCTTTTTGTCTGGTAGAAGCG +
Preference number: 5 (lower is better)
Translates to: RSSSECFRQMSMFLR*AFEKWSQAFCLVEA
Trigger: CGCTTCTACCAGACAAAAAGCTTGGGACCATTTCTCGAAAGCCCAGCGCAAGAACATAGACATTTGGCGAAAGCACTCTGAGGAGCTCCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CAA 90 bp CTATACATTACATACATAACTGTAGCCTGGCAACCACCATTGCTACAGCGCCATCTGTCCTCTTCCAGTTaGCGTCGATGCCGCTCCTCC +
Preference number: 5 (lower is better)
Translates to: LYITYITVAWQPPLLQRHLSSSS*RRCRSS
Trigger: GGAGGAGCGGCATCGACGCAAACTGGAAGAGGACAG...ATGGCGCTGTAGCAATGGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CAA 90 bp AAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTCCGCACAGGTCCCACTGTAGCTGTTGGTCCTaGGTGAGGTTTTCTTCTGTC +
Preference number: 5 (lower is better)
Translates to: KTPQMSLNKALVAPHRSHCSCWS*VRFSSV
Trigger: GACAGAAGAAAACCTCACCAAGGACCAACAGCTACA...GTGGGACCTGTGCGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS TCA 90 bp GTACCTTTTAACTGCTCCTGGAGGACTTTCAGCAACGCTTGCGTGTaGGACTGCTCCTCCTTTGCCTGCTCCAATTCCGACTTTTTGTTG +
Preference number: 5 (lower is better)
Translates to: VPFNCSWRTFSNACV*DCSSFACSNSDFLL
Trigger: CAACAAAAAGTCGGAATTGGAGCAGGCAAAGGAGGAGCAGTCTCACACGCAAGCGTTGCTGAAAGTCCTCCAGGAGCAGTTAAAAGGTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS CCA 90 bp AACGCGACCGTCAACACATTGATTTCATTTGCATCCTCGTGGCTGTaGCCATTCGTCTCCACCAAGTCCTTGGTACCTTTTAACTGCTCC +
Preference number: 5 (lower is better)
Translates to: NATVNTLISFASSWL*PFVSTKSLVPFNCS
Trigger: GGAGCAGTTAAAAGGTACCAAGGACTTGGTGGAGACGAATGGCCACAGCCACGAGGATGCAAATGAAATCAATGTGTTGACGGTCGCGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CAA 90 bp TCCACGCACATGAAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTCCGCAGTGGATTATTTCCTaGACGACAGCCACTTCCGTT +
Preference number: 5 (lower is better)
Translates to: STHMKTPQMSLNKALVAPQWIIS*TTATSV
Trigger: AACGGAAGTGGCTGTCGTCAAGGAAATAATCCACTG...CGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTCATGTGCGTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CAA 90 bp GGAACTGGTACACAATTACATTTCCACGCACATGAAAACGCCACAGATGTCACTCCGGGCGCGCATCCTTaGCTTGCATTCCCACTCATA +
Preference number: 5 (lower is better)
Translates to: GTGTQLHFHAHENATDVTPGAHP*LAFPLI
Trigger: TATGAGTGGGAATGCAAGCAAAGGATGCGCGCCCGG...AGTGACATCTGTGGCGTTTTCATGTGCGTGGAAATGTAATTGTGTACCAGTTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CAA 90 bp TGTAAGGAACTGGTACACAATTACATTTCCACGCACATGAAAACGCCACAGATGCTGTCCTCTTCCAGTTaGCGTCGATGCCGCTCCTCC +
Preference number: 5 (lower is better)
Translates to: CKELVHNYISTHMKTPQMLSSSS*RRCRSS
Trigger: GGAGGAGCGGCATCGACGCAAACTGGAAGAGGACAG...CATCTGTGGCGTTTTCATGTGCGTGGAAATGTAATTGTGTACCAGTTCCTTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CAA 90 bp CTATACATTACATACATAACTGTAGCCTGGCAACCACCATTGCTACAGCGCCATTGGAGTAGAACTGGTTaGCCGAGCGCCGGTTCACCT +
Preference number: 5 (lower is better)
Translates to: LYITYITVAWQPPLLQRHWSRTG*PSAGSP
Trigger: AGGTGAACCGGCGCTCGGCAAACCAGTTCTACTCCA...ATGGCGCTGTAGCAATGGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CAA 90 bp GAAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTCCGCACAGGTCCCACCCGTTAAGGCATTTTaGAAGTTCTCCTTTGCTTCC +
Preference number: 5 (lower is better)
Translates to: ENATDVTEQSFGGSAQVPPVKAF*KFSFAS
Trigger: GGAAGCAAAGGAGAACTTCAAAAATGCCTTAACGGG...TGGGACCTGTGCGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CAA 90 bp TGTAAGGAACTGGTACACAATTACATTTCCACGCACATGAAAACGCCACAGATGCATGAGCTGCTCGCTTaGAGCGTTCCGGAGCTCCTC +
Preference number: 5 (lower is better)
Translates to: CKELVHNYISTHMKTPQMHELLA*SVPELL
Trigger: GAGGAGCTCCGGAACGCTCAAAGCGAGCAGCTCATG...CATCTGTGGCGTTTTCATGTGCGTGGAAATGTAATTGTGTACCAGTTCCTTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CAA 90 bp TGTCAGCTATACATTACATACATAACTGTAGCCTGGCAACCACCATTGCTACAGCCGGGCGCGCATCCTTaGCTTGCATTCCCACTCATA +
Preference number: 5 (lower is better)
Translates to: CQLYITYITVAWQPPLLQPGAHP*LAFPLI
Trigger: TATGAGTGGGAATGCAAGCAAAGGATGCGCGCCCGG...CTGTAGCAATGGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAGCTGACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CAA 90 bp TCCACGCACATGAAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTCCGATGGTCCCAAGCTTTTaGTCTGGTAGAAGCGTTGAA +
Preference number: 5 (lower is better)
Translates to: STHMKTPQMSLNKALVAPMVPSF*SGRSVE
Trigger: TTCAACGCTTCTACCAGACAAAAAGCTTGGGACCAT...CGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTCATGTGCGTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CAA 90 bp TACATTTCCACGCACATGAAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGCTGGATGGCCAGCAATaGCTGCTGCATGCCTTGCAT +
Preference number: 5 (lower is better)
Translates to: YISTHMKTPQMSLNKALVLDGQQ*LLHALH
Trigger: ATGCAAGGCATGCAGCAGCAATTGCTGGCCATCCAG...CACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTCATGTGCGTGGAAATGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS CCA 90 bp TTAACCAACGCGACCGTCAACACATTGATTTCATTTGCATCCTCGTaGCTGTGGCCATTCGTCTCCACCAAGTCCTTGGTACCTTTTAAC +
Preference number: 5 (lower is better)
Translates to: LTNATVNTLISFASS*LWPFVSTKSLVPFN
Trigger: GTTAAAAGGTACCAAGGACTTGGTGGAGACGAATGGCCACAGCCACGAGGATGCAAATGAAATCAATGTGTTGACGGTCGCGTTGGTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CAA 90 bp TGTCAGCTATACATTACATACATAACTGTAGCCTGGCAACCACCATTGCTACAGTCGGTGACGGACATGTaGAGCTGGGTGGTATCTAGG +
Preference number: 5 (lower is better)
Translates to: CQLYITYITVAWQPPLLQSVTDM*SWVVSR
Trigger: CCTAGATACCACCCAGCTCAACATGTCCGTCACCGA...CTGTAGCAATGGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAGCTGACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CAA 90 bp AAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGGCTCCGCACAGGTCCCACCTGCTCAAAGACTTCTaGAATAATTTCTTCCGTTGC +
Preference number: 5 (lower is better)
Translates to: KTPQMSLNKALVAPHRSHLLKDF*NNFFRC
Trigger: GCAACGGAAGAAATTATTCAAGAAGTCTTTGAGCAG...GTGGGACCTGTGCGGAGCCACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CAA 90 bp TGTAAGCATTTGCTCTATTCTGCAGCAAGGCCTAGTTTGAGATTTTGTGATCATCATGAGCTGCTCGCTTaGAGCGTTCCGGAGCTCCTC +
Preference number: 5 (lower is better)
Translates to: CKHLLYSAARPSLRFCDHHELLA*SVPELL
Trigger: GAGGAGCTCCGGAACGCTCAAAGCGAGCAGCTCATG...ATGATCACAAAATCTCAAACTAGGCCTTGCTGCAGAATAGAGCAAATGCTTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CAA 90 bp TGTCAGCTATACATTACATACATAACTGTAGCCTGGCAACCACCATTGCTACAGCCTGTAGGCATCCAGTaGCCACCGGAGACTGTCATT +
Preference number: 5 (lower is better)
Translates to: CQLYITYITVAWQPPLLQPVGIQ*PPETVI
Trigger: AATGACAGTCTCCGGTGGCAACTGGATGCCTACAGG...CTGTAGCAATGGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAGCTGACA
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CAA 90 bp TGTAAGGAACTGGTACACAATTACATTTCCACGCACATGAAAACGCCACAGATGGAGACTGCTCCTCCTTaGCCTGCTCCAATTCCGACT +
Preference number: 5 (lower is better)
Translates to: CKELVHNYISTHMKTPQMETAPP*PAPIPT
Trigger: AGTCGGAATTGGAGCAGGCAAAGGAGGAGCAGTCTC...CATCTGTGGCGTTTTCATGTGCGTGGAAATGTAATTGTGTACCAGTTCCTTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CAA 90 bp CAGCTATACATTACATACATAACTGTAGCCTGGCAACCACCATTGCTACAGCGCGTCTCCACCAAGTCCTaGGTACCTTTTAACTGCTCC +
Preference number: 5 (lower is better)
Translates to: QLYITYITVAWQPPLLQRVSTKS*VPFNCS
Trigger: GGAGCAGTTAAAAGGTACCAAGGACTTGGTGGAGAC...GCGCTGTAGCAATGGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CAA 90 bp ATTGCTACAGCGCCATTAACTGTAAGCATTTGCTCTATTCTGCAGCAAGGCCTATGTCTGGTAGAAGCGTaGAAAACGGCCACAATCTGC +
Preference number: 5 (lower is better)
Translates to: IATAPLTVSICSILQQGLCLVEA*KTATIC
Trigger: GCAGATTGTGGCCGTTTTCAACGCTTCTACCAGACA...TAGGCCTTGCTGCAGAATAGAGCAAATGCTTACAGTTAATGGCGCTGTAGCAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CAA 90 bp TGTAAGGAACTGGTACACAATTACATTTCCACGCACATGAAAACGCCACAGATGTTGCTGCTGCATGCCTaGCATGGTTTGCTGCAGGAA +
Preference number: 5 (lower is better)
Translates to: CKELVHNYISTHMKTPQMLLLHA*HGLLQE
Trigger: TTCCTGCAGCAAACCATGCAAGGCATGCAGCAGCAA...CATCTGTGGCGTTTTCATGTGCGTGGAAATGTAATTGTGTACCAGTTCCTTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CAA 90 bp CATTTAATGTTGTCAGCTATACATTACATACATAACTGTAGCCTGGCAACCACCTCGGTGACGGACATGTaGAGCTGGGTGGTATCTAGG +
Preference number: 5 (lower is better)
Translates to: HLMLSAIHYIHNCSLATTSVTDM*SWVVSR
Trigger: CCTAGATACCACCCAGCTCAACATGTCCGTCACCGA...GGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAGCTGACAACATTAAATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CAA 90 bp CATTTAATGTTGTCAGCTATACATTACATACATAACTGTAGCCTGGCAACCACCCCTGTAGGCATCCAGTaGCCACCGGAGACTGTCATT +
Preference number: 5 (lower is better)
Translates to: HLMLSAIHYIHNCSLATTPVGIQ*PPETVI
Trigger: AATGACAGTCTCCGGTGGCAACTGGATGCCTACAGG...GGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAGCTGACAACATTAAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CAA 90 bp GTTACATACCAAGCACGGGACAGCAGCAGTTGTTCCTTCTATTTACATTTTATGTTGCTGCTGCATGCCTaGCATGGTTTGCTGCAGGAA +
Preference number: 5 (lower is better)
Translates to: VTYQARDSSSCSFYLHFMLLLHA*HGLLQE
Trigger: TTCCTGCAGCAAACCATGCAAGGCATGCAGCAGCAA...CATAAAATGTAAATAGAAGGAACAACTGCTGCTGTCCCGTGCTTGGTATGTAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227662.2
CDS-3UTR CAA 90 bp CAGCTATACATTACATACATAACTGTAGCCTGGCAACCACCATTGCTACAGCGCAATTCCGACTTTTTGTaGTTCAGCTCCTCCTGGATG +
Preference number: 5 (lower is better)
Translates to: QLYITYITVAWQPPLLQRNSDFL*FSSSWM
Trigger: CATCCAGGAGGAGCTGAACAACAAAAAGTCGGAATT...GCGCTGTAGCAATGGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAGCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CAA 90 bp AATGTTACATACCAAGCACGGGACAGCAGCAGTTGTTCCTTCTATTTACATTTTATTCCAGTCATCATGTaGAGGCCTGGATCGAAGCCC +
Preference number: 5 (lower is better)
Translates to: NVTYQARDSSSCSFYLHFIPVIM*RPGSKP
Trigger: GGGCTTCGATCCAGGCCTCAACATGATGACTGGAAT...AAAATGTAAATAGAAGGAACAACTGCTGCTGTCCCGTGCTTGGTATGTAACATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CAA 90 bp TGTAAGCATTTGCTCTATTCTGCAGCAAGGCCTAGTTTGAGATTTTGTGATCATCTGGAGGTCGTTCTCTaGTGGAAGGAGGTGGAAGAT +
Preference number: 5 (lower is better)
Translates to: CKHLLYSAARPSLRFCDHLEVVL*WKEVED
Trigger: ATCTTCCACCTCCTTCCACAAGAGAACGACCTCCAG...ATGATCACAAAATCTCAAACTAGGCCTTGCTGCAGAATAGAGCAAATGCTTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CAA 90 bp CATTTAATGTTGTCAGCTATACATTACATACATAACTGTAGCCTGGCAACCACCCTGGAGGTCGTTCTCTaGTGGAAGGAGGTGGAAGAT +
Preference number: 5 (lower is better)
Translates to: HLMLSAIHYIHNCSLATTLEVVL*WKEVED
Trigger: ATCTTCCACCTCCTTCCACAAGAGAACGACCTCCAG...GGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAGCTGACAACATTAAATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CAA 90 bp AACTGTAGCCTGGCAACCACCATTGCTACAGCGCCATTAACTGTAAGCATTTGCCTGCTCAAAGACTTCTaGAATAATTTCTTCCGTTGC +
Preference number: 5 (lower is better)
Translates to: NCSLATTIATAPLTVSICLLKDF*NNFFRC
Trigger: GCAACGGAAGAAATTATTCAAGAAGTCTTTGAGCAG...GCAAATGCTTACAGTTAATGGCGCTGTAGCAATGGTGGTTGCCAGGCTACAGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CAA 90 bp TTACATTTCCACGCACATGAAAACGCCACAGATGTCACTGAACAAAGCTTTGGTTGTAGCTGTTGGTCCTaGGTGAGGTTTTCTTCTGTC +
Preference number: 5 (lower is better)
Translates to: LHFHAHENATDVTEQSFGCSCWS*VRFSSV
Trigger: GACAGAAGAAAACCTCACCAAGGACCAACAGCTACA...ACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTCATGTGCGTGGAAATGTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CAA 90 bp TACATTTCCACGCACATGAAAACGCCACAGATGTCACTGAACAAAGCTTTGGTGATAGCCTCAGAGAACTaGCTGTCATCTTTCAGTTTG +
Preference number: 5 (lower is better)
Translates to: YISTHMKTPQMSLNKALVIASEN*LSSFSL
Trigger: CAAACTGAAAGATGACAGCAAGTTCTCTGAGGCTAT...CACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTCATGTGCGTGGAAATGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CAA 90 bp CACCATTGCTACAGCGCCATTAACTGTAAGCATTTGCTCTATTCTGCAGCAAGGCTCAGATTTCAAACCTaGGCTTCTCTTTTCAGTGTT +
Preference number: 5 (lower is better)
Translates to: HHCYSAINCKHLLYSAARLRFQT*ASLFSV
Trigger: AACACTGAAAAGAGAAGCCAAGGTTTGAAATCTGAG...CCTTGCTGCAGAATAGAGCAAATGCTTACAGTTAATGGCGCTGTAGCAATGGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CAA 90 bp TGCTACAGCGCCATTAACTGTAAGCATTTGCTCTATTCTGCAGCAAGGCCTAGTCTCAGATTTCAAACCTaGGCTTCTCTTTTCAGTGTT +
Preference number: 5 (lower is better)
Translates to: CYSAINCKHLLYSAARPSLRFQT*ASLFSV
Trigger: AACACTGAAAAGAGAAGCCAAGGTTTGAAATCTGAG...ACTAGGCCTTGCTGCAGAATAGAGCAAATGCTTACAGTTAATGGCGCTGTAGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CAA 90 bp CTATGCAGTCCATGTGAAAAGAATACGCGATGGAGAACCGTTACATTAGAAAAACAGTGGATTATTTCCTaGACGACAGCCACTTCCGTT +
Preference number: 5 (lower is better)
Translates to: LCSPCEKNTRWRTVTLEKQWIIS*TTATSV
Trigger: AACGGAAGTGGCTGTCGTCAAGGAAATAATCCACTG...TTTTTCTAATGTAACGGTTCTCCATCGCGTATTCTTTTCACATGGACTGCATAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CAA 90 bp CATTTAATGTTGTCAGCTATACATTACATACATAACTGTAGCCTGGCAACCACCCAGTGGATTATTTCCTaGACGACAGCCACTTCCGTT +
Preference number: 5 (lower is better)
Translates to: HLMLSAIHYIHNCSLATTQWIIS*TTATSV
Trigger: AACGGAAGTGGCTGTCGTCAAGGAAATAATCCACTG...GGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAGCTGACAACATTAAATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CAA 90 bp ATGTTGTCAGCTATACATTACATACATAACTGTAGCCTGGCAACCACCATTGCTCAAATGTCTATGTTCTaGCGCTGGGCTTTCGAGAAA +
Preference number: 5 (lower is better)
Translates to: MLSAIHYIHNCSLATTIAQMSMF*RWAFEK
Trigger: TTTCTCGAAAGCCCAGCGCAAGAACATAGACATTTG...AGCAATGGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAGCTGACAACAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CAA 90 bp GTTACATACCAAGCACGGGACAGCAGCAGTTGTTCCTTCTATTTACATTTTATGATAGCCTCAGAGAACTaGCTGTCATCTTTCAGTTTG +
Preference number: 5 (lower is better)
Translates to: VTYQARDSSSCSFYLHFMIASEN*LSSFSL
Trigger: CAAACTGAAAGATGACAGCAAGTTCTCTGAGGCTAT...CATAAAATGTAAATAGAAGGAACAACTGCTGCTGTCCCGTGCTTGGTATGTAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CAA 90 bp TGTAAGCATTTGCTCTATTCTGCAGCAAGGCCTAGTTTGAGATTTTGTGATCATCCCGTTAAGGCATTTTaGAAGTTCTCCTTTGCTTCC +
Preference number: 5 (lower is better)
Translates to: CKHLLYSAARPSLRFCDHPVKAF*KFSFAS
Trigger: GGAAGCAAAGGAGAACTTCAAAAATGCCTTAACGGG...ATGATCACAAAATCTCAAACTAGGCCTTGCTGCAGAATAGAGCAAATGCTTACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CAA 90 bp ACATACCAAGCACGGGACAGCAGCAGTTGTTCCTTCTATTTACATTTTATGAAACAAATGTCTATGTTCTaGCGCTGGGCTTTCGAGAAA +
Preference number: 5 (lower is better)
Translates to: TYQARDSSSCSFYLHFMKQMSMF*RWAFEK
Trigger: TTTCTCGAAAGCCCAGCGCAAGAACATAGACATTTG...TTTCATAAAATGTAAATAGAAGGAACAACTGCTGCTGTCCCGTGCTTGGTATGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227662.2
CDS-3UTR CAA 90 bp TGTAAGCATTTGCTCTATTCTGCAGCAAGGCCTAGTTTGAGATTTTGTGATCATAATTCCGACTTTTTGTaGTTCAGCTCCTCCTGGATG +
Preference number: 5 (lower is better)
Translates to: CKHLLYSAARPSLRFCDHNSDFL*FSSSWM
Trigger: CATCCAGGAGGAGCTGAACAACAAAAAGTCGGAATT...ATGATCACAAAATCTCAAACTAGGCCTTGCTGCAGAATAGAGCAAATGCTTACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS-3UTR CAA 90 bp TTACATTTCCACGCACATGAAAACGCCACAGATGTCACTGAACAAAGCTTTGGTAAAAGAGTACAGCTTTaGCAGTGGATTATTTCCTTG +
Preference number: 5 (lower is better)
Translates to: LHFHAHENATDVTEQSFGKRVQL*QWIISL
Trigger: CAAGGAAATAATCCACTGCAAAAGCTGTACTCTTTT...ACCAAAGCTTTGTTCAGTGACATCTGTGGCGTTTTCATGTGCGTGGAAATGTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CAA 90 bp CATTTAATGTTGTCAGCTATACATTACATACATAACTGTAGCCTGGCAACCACCATAGCCTCAGAGAACTaGCTGTCATCTTTCAGTTTG +
Preference number: 5 (lower is better)
Translates to: HLMLSAIHYIHNCSLATTIASEN*LSSFSL
Trigger: CAAACTGAAAGATGACAGCAAGTTCTCTGAGGCTAT...GGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAGCTGACAACATTAAATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CAA 90 bp GTTACATACCAAGCACGGGACAGCAGCAGTTGTTCCTTCTATTTACATTTTATGAAAAGAGTACAGCTTTaGCAGTGGATTATTTCCTTG +
Preference number: 5 (lower is better)
Translates to: VTYQARDSSSCSFYLHFMKRVQL*QWIISL
Trigger: CAAGGAAATAATCCACTGCAAAAGCTGTACTCTTTT...CATAAAATGTAAATAGAAGGAACAACTGCTGCTGTCCCGTGCTTGGTATGTAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CAA 90 bp CATTTAATGTTGTCAGCTATACATTACATACATAACTGTAGCCTGGCAACCACCCTGCTCAAAGACTTCTaGAATAATTTCTTCCGTTGC +
Preference number: 5 (lower is better)
Translates to: HLMLSAIHYIHNCSLATTLLKDF*NNFFRC
Trigger: GCAACGGAAGAAATTATTCAAGAAGTCTTTGAGCAG...GGTGGTTGCCAGGCTACAGTTATGTATGTAATGTATAGCTGACAACATTAAATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS-3UTR CAA 90 bp ATTAACTGTAAGCATTTGCTCTATTCTGCAGCAAGGCCTAGTTTGAGATTTTGTAAAAGAGTACAGCTTTaGCAGTGGATTATTTCCTTG +
Preference number: 5 (lower is better)
Translates to: INCKHLLYSAARPSLRFCKRVQL*QWIISL
Trigger: CAAGGAAATAATCCACTGCAAAAGCTGTACTCTTTT...ACAAAATCTCAAACTAGGCCTTGCTGCAGAATAGAGCAAATGCTTACAGTTAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS CAA 72 bp GGCGGCGAGGGAGGCCGCAGCCTGTCCTCTTCCAGTTaGCGTCGATGCCGCTCCTCCCGGGCGCGCATCCTT +
Preference number: 6 (lower is better)
Translates to: GGEGGRSLSSSS*RRCRSSRARIL
Trigger: AAGGATGCGCGCCCGGGAGGAGCGGCATCGACGCAAACTGGAAGAGGACAGGCTGCGGCCTCCCTCGCCGCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS GCA 72 bp GCGGCGAGGGAGGCCGCAGCCTGTCCTCTTCCAGTTTaGGTCGATGCCGCTCCTCCCGGGCGCGCATCCTTT +
Preference number: 6 (lower is better)
Translates to: AAREAAACPLPV*VDAAPPGRASF
Trigger: AAAGGATGCGCGCCCGGGAGGAGCGGCATCGACGCAAACTGGAAGAGGACAGGCTGCGGCCTCCCTCGCCGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS CAA 90 bp ATGATGGCCGGCGGCGAGGGAGGCCGCAGCCTGTCCTCTTCCAGTTaGCGTCGATGCCGCTCCTCCCGGGCGCGCATCCTTTGCTTGCAT +
Preference number: 6 (lower is better)
Translates to: MMAGGEGGRSLSSSS*RRCRSSRARILCLH
Trigger: ATGCAAGCAAAGGATGCGCGCCCGGGAGGAGCGGCATCGACGCAAACTGGAAGAGGACAGGCTGCGGCCTCCCTCGCCGCCGGCCATCAT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS GCA 72 bp GGAGGCCGCAGCCTGTCCTCTTCCAGTTTGCGTCGATaGCGCTCCTCCCGGGCGCGCATCCTTTGCTTGCAT +
Preference number: 6 (lower is better)
Translates to: GGRSLSSSSLRR*RSSRARILCLH
Trigger: ATGCAAGCAAAGGATGCGCGCCCGGGAGGAGCGGCATCGACGCAAACTGGAAGAGGACAGGCTGCGGCCTCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS GCA 72 bp TCGAAGCCCGGCACGCAGATTGAGTCGGACACGAGCTaGTGTCCAGGCAACCCCACGGGAACCATGCCCAAG +
Preference number: 6 (lower is better)
Translates to: SKPGTQIESDTS*CPGNPTGTMPK
Trigger: CTTGGGCATGGTTCCCGTGGGGTTGCCTGGACAGCAGCTCGTGTCCGACTCAATCTGCGTGCCGGGCTTCGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS CAA 72 bp CTCCTCCTCACGGCGGATGCCCATGAGCTGCTCGCTTaGAGCGTTCCGGAGCTCCTCAGAGTGCTTTCGCCA +
Preference number: 6 (lower is better)
Translates to: LLLTADAHELLA*SVPELLRVLSP
Trigger: TGGCGAAAGCACTCTGAGGAGCTCCGGAACGCTCAAAGCGAGCAGCTCATGGGCATCCGCCGTGAGGAGGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS TCA 72 bp CAGACATTTCCATCTCCTCCTCACGGCGGATGCCCATaGGCTGCTCGCTTTGAGCGTTCCGGAGCTCCTCAG +
Preference number: 6 (lower is better)
Translates to: QTFPSPPHGGCP*AARFERSGAPQ
Trigger: CTGAGGAGCTCCGGAACGCTCAAAGCGAGCAGCTCATGGGCATCCGCCGTGAGGAGGAGATGGAAATGTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS CAA 72 bp GCTGTGGCCCAGGCTGTGGGATCGGTGACGGACATGTaGAGCTGGGTGGTATCTAGGGCTATGCTCCCCAAA +
Preference number: 6 (lower is better)
Translates to: AVAQAVGSVTDM*SWVVSRAMLPK
Trigger: TTTGGGGAGCATAGCCCTAGATACCACCCAGCTCAACATGTCCGTCACCGATCCCACAGCCTGGGCCACAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS TCA 72 bp CATCCAGTTGCCACCGGAGACTGTCATTCTCCTCTTTaGGGGCGTAGGCCTGAGCAGCCAGGGCAGCAGAAT +
Preference number: 6 (lower is better)
Translates to: HPVATGDCHSPL*GRRPEQPGQQN
Trigger: ATTCTGCTGCCCTGGCTGCTCAGGCCTACGCCCTCAAAGAGGAGAATGACAGTCTCCGGTGGCAACTGGATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227662.2
CDS CCA 72 bp GCCCAGGCTGTGGGATCGGTGACGGACATGTTGAGCTaGGTGGTATCTAGGGCTATGCTCCCCAAACCATCA +
Preference number: 6 (lower is better)
Translates to: AQAVGSVTDMLS*VVSRAMLPKPS
Trigger: TGATGGTTTGGGGAGCATAGCCCTAGATACCACCCAGCTCAACATGTCCGTCACCGATCCCACAGCCTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS CAA 90 bp AGACCGGGTATCATCGGGTTAATGGGGGTGATTCCAGTCATCATGTaGAGGCCTGGATCGAAGCCCGGCACGCAGATTGAGTCGGACACG +
Preference number: 6 (lower is better)
Translates to: RPGIIGLMGVIPVIM*RPGSKPGTQIESDT
Trigger: CGTGTCCGACTCAATCTGCGTGCCGGGCTTCGATCCAGGCCTCAACATGATGACTGGAATCACCCCCATTAACCCGATGATACCCGGTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS CCA 72 bp ATCAGCTGCTGCAGCCATCATCTGATGAAGCTCCCGTaGACACTGGGCAACGCTCTCAAATCCAGCCGCATC +
Preference number: 6 (lower is better)
Translates to: ISCCSHHLMKLP*TLGNALKSSRI
Trigger: GATGCGGCTGGATTTGAGAGCGTTGCCCAGTGTCCACGGGAGCTTCATCAGATGATGGCTGCAGCAGCTGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS TCA 72 bp AACTGCTCCTGGAGGACTTTCAGCAACGCTTGCGTGTaGGACTGCTCCTCCTTTGCCTGCTCCAATTCCGAC +
Preference number: 6 (lower is better)
Translates to: NCSWRTFSNACV*DCSSFACSNSD
Trigger: GTCGGAATTGGAGCAGGCAAAGGAGGAGCAGTCTCACACGCAAGCGTTGCTGAAAGTCCTCCAGGAGCAGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS CCA 72 bp CCTCGTGGCTGTGGCCATTCGTCTCCACCAAGTCCTTaGTACCTTTTAACTGCTCCTGGAGGACTTTCAGCA +
Preference number: 6 (lower is better)
Translates to: PRGCGHSSPPSP*YLLTAPGGLSA
Trigger: TGCTGAAAGTCCTCCAGGAGCAGTTAAAAGGTACCAAGGACTTGGTGGAGACGAATGGCCACAGCCACGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS CAA 72 bp ATCATCGGGTTAATGGGGGTGATTCCAGTCATCATGTaGAGGCCTGGATCGAAGCCCGGCACGCAGATTGAG +
Preference number: 6 (lower is better)
Translates to: IIGLMGVIPVIM*RPGSKPGTQIE
Trigger: CTCAATCTGCGTGCCGGGCTTCGATCCAGGCCTCAACATGATGACTGGAATCACCCCCATTAACCCGATGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS CAA 72 bp TCCTCGTGGCTGTGGCCATTCGTCTCCACCAAGTCCTaGGTACCTTTTAACTGCTCCTGGAGGACTTTCAGC +
Preference number: 6 (lower is better)
Translates to: SSWLWPFVSTKS*VPFNCSWRTFS
Trigger: GCTGAAAGTCCTCCAGGAGCAGTTAAAAGGTACCAAGGACTTGGTGGAGACGAATGGCCACAGCCACGAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS GCA 72 bp AATCCACGTGCAGGCGGCCGGAATCCTTTTTATCCGTaGTCGACCCTAATCGCATTCTGTAACCAGAGAGGT +
Preference number: 6 (lower is better)
Translates to: NPRAGGRNPFYP*STLIAFCNQRG
Trigger: ACCTCTCTGGTTACAGAATGCGATTAGGGTCGAGCACGGATAAAAAGGATTCCGGCCGCCTGCACGTGGATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2
CDS CAA 90 bp TCATTTGCATCCTCGTGGCTGTGGCCATTCGTCTCCACCAAGTCCTaGGTACCTTTTAACTGCTCCTGGAGGACTTTCAGCAACGCTTGC +
Preference number: 6 (lower is better)
Translates to: SFASSWLWPFVSTKS*VPFNCSWRTFSNAC
Trigger: GCAAGCGTTGCTGAAAGTCCTCCAGGAGCAGTTAAAAGGTACCAAGGACTTGGTGGAGACGAATGGCCACAGCCACGAGGATGCAAATGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS CCA 72 bp GCGACCGTCAACACATTGATTTCATTTGCATCCTCGTaGCTGTGGCCATTCGTCTCCACCAAGTCCTTGGTA +
Preference number: 6 (lower is better)
Translates to: ATVNTLISFASS*LWPFVSTKSLV
Trigger: TACCAAGGACTTGGTGGAGACGAATGGCCACAGCCACGAGGATGCAAATGAAATCAATGTGTTGACGGTCGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS CAA 72 bp TCTCGGTCCTGGTTAACCAACGCGACCGTCAACACATaGATTTCATTTGCATCCTCGTGGCTGTGGCCATTC +
Preference number: 6 (lower is better)
Translates to: SRSWLTNATVNT*ISFASSWLWPF
Trigger: GAATGGCCACAGCCACGAGGATGCAAATGAAATCAATGTGTTGACGGTCGCGTTGGTTAACCAGGACCGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS GCA 72 bp GCTCCTCAGAGTGCTTTCGCCAAATGTCTATGTTCTTaGGCTGGGCTTTCGAGAAATGGTCCCAAGCTTTTT +
Preference number: 6 (lower is better)
Translates to: APQSAFAKCLCS*AGLSRNGPKLF
Trigger: AAAAAGCTTGGGACCATTTCTCGAAAGCCCAGCGCAAGAACATAGACATTTGGCGAAAGCACTCTGAGGAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
CDS CAA 72 bp CAACAAACACAGTCTTACACCCTGGAGGTCGTTCTCTaGTGGAAGGAGGTGGAAGATTTGGATTTTGGGGGA +
Preference number: 6 (lower is better)
Translates to: QQTQSYTLEVVL*WKEVEDLDFGG
Trigger: TCCCCCAAAATCCAAATCTTCCACCTCCTTCCACAAGAGAACGACCTCCAGGGTGTAAGACTGTGTTTGTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000022589.9
ENSMUST00000227662.2
ENSMUST00000227831.2