Pregenerated sensors for ENDOG (Mus musculus)
Ensembl gene IDs: ENSMUSG00000015337Ensembl transcript IDs: ENSMUST00000015481.6
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | ATAACTGCCTTTAATGTGAGTCAGCCCATCTCCCCAGGGGCTCCAGTGAGTCCTTCCAGGCATTCTGGTTaGGGTGTGGCACCTGAGGCG | + |
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Preference number: 4 (lower is better) Translates to: ITAFNVSQPISPGAPVSPSRHSG*GVAPEA Trigger: CGCCTCAGGTGCCACACCTCAACCAGAATGCCTGGA...AGGACTCACTGGAGCCCCTGGGGAGATGGGCTGACTCACATTAAAGGCAGTTAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS-3UTR GCA 90 bp | CAAGTCTTCTCTCCAAAAATAACTGCCTTTAATGTGAGTCAGCCCATCTCCCCAGCAGCCCCGGCGCTTTaGCCTCCCGCCGCCGCCAAT | + |
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Preference number: 4 (lower is better) Translates to: QVFSPKITAFNVSQPISPAAPAL*PPAAAN Trigger: ATTGGCGGCGGCGGGAGGGCAAAGCGCCGGGGCTGC...TGGGGAGATGGGCTGACTCACATTAAAGGCAGTTATTTTTGGAGAGAAGACTTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS-3UTR CCA 90 bp | ATAACTGCCTTTAATGTGAGTCAGCCCATCTCCCCAGGGGCTCCAGTGAGTCCTGCATTGGTGGCGCGGTaGTACGCGTGCACAGAGTCA | + |
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Preference number: 4 (lower is better) Translates to: ITAFNVSQPISPGAPVSPALVAR*YACTES Trigger: TGACTCTGTGCACGCGTACCACCGCGCCACCAATGC...AGGACTCACTGGAGCCCCTGGGGAGATGGGCTGACTCACATTAAAGGCAGTTAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS-3UTR CCA 90 bp | GTCTTCTCTCCAAAAATAACTGCCTTTAATGTGAGTCAGCCCATCTCCCCAGGGGCGGCGGCGGCCAAATaGCCGCGGTCAAAGCCACTG | + |
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Preference number: 4 (lower is better) Translates to: VFSPKITAFNVSQPISPGAAAAK*PRSKPL Trigger: CAGTGGCTTTGACCGCGGCCATTTGGCCGCCGCCGC...CCCTGGGGAGATGGGCTGACTCACATTAAAGGCAGTTATTTTTGGAGAGAAGAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS-3UTR CCA 90 bp | GATGGTCAAGTCTTCTCTCCAAAAATAACTGCCTTTAATGTGAGTCAGCCCATCCGGGCAGCCCGTACTTaGCCAGTTCCCCGGTGCCGC | + |
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Preference number: 4 (lower is better) Translates to: DGQVFSPKITAFNVSQPIRAART*PVPRCR Trigger: GCGGCACCGGGGAACTGGCCAAGTACGGGCTGCCCG...GATGGGCTGACTCACATTAAAGGCAGTTATTTTTGGAGAGAAGACTTGACCATC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS-3UTR GCA 90 bp | GTCTTCTCTCCAAAAATAACTGCCTTTAATGTGAGTCAGCCCATCTCCCCAGGGGATCTGCCCACCGGCTaGCTCCAGGATCAGCACCTT | + |
|
Preference number: 4 (lower is better) Translates to: VFSPKITAFNVSQPISPGDLPTG*LQDQHL Trigger: AAGGTGCTGATCCTGGAGGCAGCCGGTGGGCAGATC...CCCTGGGGAGATGGGCTGACTCACATTAAAGGCAGTTATTTTTGGAGAGAAGAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS-3UTR GCA 90 bp | GGTCAAGTCTTCTCTCCAAAAATAACTGCCTTTAATGTGAGTCAGCCCATCTCCCCGAGGCCCGCTCGATaGTCTCGATGGGCACCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: GQVFSPKITAFNVSQPISPRPAR*SRWAPG Trigger: TCCTGGTGCCCATCGAGAGCATCGAGCGGGCCTCGG...GGAGATGGGCTGACTCACATTAAAGGCAGTTATTTTTGGAGAGAAGACTTGACC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS-3UTR CCA 90 bp | GGTCAAGTCTTCTCTCCAAAAATAACTGCCTTTAATGTGAGTCAGCCCATCTCCCGCGGTAGTCCGCATTaGTGGCGCGGTGGTACGCGT | + |
|
Preference number: 4 (lower is better) Translates to: GQVFSPKITAFNVSQPISRGSPH*WRGGTR Trigger: ACGCGTACCACCGCGCCACCAATGCGGACTACCGCG...GGAGATGGGCTGACTCACATTAAAGGCAGTTATTTTTGGAGAGAAGACTTGACC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS-3UTR CCA 90 bp | GATGGTCAAGTCTTCTCTCCAAAAATAACTGCCTTTAATGTGAGTCAGCCCATCGACTCCAGCGGTGGTTaGCGGCGGCGGCCAAATGGC | + |
|
Preference number: 4 (lower is better) Translates to: DGQVFSPKITAFNVSQPIDSSGG*RRRPNG Trigger: GCCATTTGGCCGCCGCCGCCAACCACCGCTGGAGTC...GATGGGCTGACTCACATTAAAGGCAGTTATTTTTGGAGAGAAGACTTGACCATC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS-3UTR CCA 90 bp | ATAACTGCCTTTAATGTGAGTCAGCCCATCTCCCCAGGGGCTCCAGTGAGTCCTATTCTGGTTGAGGTGTaGCACCTGAGGCGCTACGTT | + |
|
Preference number: 4 (lower is better) Translates to: ITAFNVSQPISPGAPVSPILVEV*HLRRYV Trigger: AACGTAGCGCCTCAGGTGCCACACCTCAACCAGAAT...AGGACTCACTGGAGCCCCTGGGGAGATGGGCTGACTCACATTAAAGGCAGTTAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS-3UTR TCA 90 bp | CATGGGAGTAGAGATGGTCAAGTCTTCTCTCCAAAAATAACTGCCTTTAATGTGTCGTCCATGGCCCGCTaGCTCCAGCGGTGGTTGGCG | + |
|
Preference number: 4 (lower is better) Translates to: HGSRDGQVFSPKITAFNVSSMAR*LQRWLA Trigger: CGCCAACCACCGCTGGAGTCAGCGGGCCATGGACGA...CACATTAAAGGCAGTTATTTTTGGAGAGAAGACTTGACCATCTCTACTCCCATG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS-3UTR CCA 90 bp | AGAGATGGTCAAGTCTTCTCTCCAAAAATAACTGCCTTTAATGTGAGTCAGCCCGACCACCGGCAACAATaGCACTCGGCCCAGCAGCCC | + |
|
Preference number: 4 (lower is better) Translates to: RDGQVFSPKITAFNVSQPDHRQQ*HSAQQP Trigger: GGGCTGCTGGGCCGAGTGCCATTGTTGCCGGTGGTC...GGGCTGACTCACATTAAAGGCAGTTATTTTTGGAGAGAAGACTTGACCATCTCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS-3UTR GCA 90 bp | GGGAGTAGAGATGGTCAAGTCTTCTCTCCAAAAATAACTGCCTTTAATGTGAGTGCGCGGTGGTACGCGTaGACAGAGTCATCCTCGCGG | + |
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Preference number: 4 (lower is better) Translates to: GSRDGQVFSPKITAFNVSARWYA*TESSSR Trigger: CCGCGAGGATGACTCTGTGCACGCGTACCACCGCGC...ACTCACATTAAAGGCAGTTATTTTTGGAGAGAAGACTTGACCATCTCTACTCCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS-3UTR CCA 90 bp | CATGGGAGTAGAGATGGTCAAGTCTTCTCTCCAAAAATAACTGCCTTTAATGTGGCCACGGAGCCGCTCTaGCCTCAGCTGCTCCAACAC | + |
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Preference number: 4 (lower is better) Translates to: HGSRDGQVFSPKITAFNVATEPL*PQLLQH Trigger: GTGTTGGAGCAGCTGAGGCCAGAGCGGCTCCGTGGC...CACATTAAAGGCAGTTATTTTTGGAGAGAAGACTTGACCATCTCTACTCCCATG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS-3UTR CCA 90 bp | GTCTTCTCTCCAAAAATAACTGCCTTTAATGTGAGTCAGCCCATCTCCCCAGGGGTGGGCACTGCCACGTaGTTCTTCCCAATAACCTGG | + |
|
Preference number: 4 (lower is better) Translates to: VFSPKITAFNVSQPISPGVGTAT*FFPITW Trigger: CCAGGTTATTGGGAAGAACCACGTGGCAGTGCCCAC...CCCTGGGGAGATGGGCTGACTCACATTAAAGGCAGTTATTTTTGGAGAGAAGAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS-3UTR CCA 90 bp | GGTCAAGTCTTCTCTCCAAAAATAACTGCCTTTAATGTGAGTCAGCCCATCTCCGCTCGATGCTCTCGATaGGCACCAGGAACCGCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: GQVFSPKITAFNVSQPISARCSR*APGTAP Trigger: TGGAGCGGTTCCTGGTGCCCATCGAGAGCATCGAGC...GGAGATGGGCTGACTCACATTAAAGGCAGTTATTTTTGGAGAGAAGACTTGACC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS-3UTR TCA 90 bp | AGAGATGGTCAAGTCTTCTCTCCAAAAATAACTGCCTTTAATGTGAGTCAGCCCTTGAGGTGTGGCACCTaGGGCGCTACGTTGCTCAGG | + |
|
Preference number: 4 (lower is better) Translates to: RDGQVFSPKITAFNVSQPLRCGT*GATLLR Trigger: CCTGAGCAACGTAGCGCCTCAGGTGCCACACCTCAA...GGGCTGACTCACATTAAAGGCAGTTATTTTTGGAGAGAAGACTTGACCATCTCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS-3UTR CCA 90 bp | CATGGGAGTAGAGATGGTCAAGTCTTCTCTCCAAAAATAACTGCCTTTAATGTGGGTAGTCCGCATTGGTaGCGCGGTGGTACGCGTGCA | + |
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Preference number: 4 (lower is better) Translates to: HGSRDGQVFSPKITAFNVGSPHW*RGGTRA Trigger: TGCACGCGTACCACCGCGCCACCAATGCGGACTACC...CACATTAAAGGCAGTTATTTTTGGAGAGAAGACTTGACCATCTCTACTCCCATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS-3UTR CCA 90 bp | GGGAGTAGAGATGGTCAAGTCTTCTCTCCAAAAATAACTGCCTTTAATGTGAGTAGAAGGTGTCGTCCATaGCCCGCTGACTCCAGCGGT | + |
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Preference number: 4 (lower is better) Translates to: GSRDGQVFSPKITAFNVSRRCRP*PADSSG Trigger: ACCGCTGGAGTCAGCGGGCCATGGACGACACCTTCT...ACTCACATTAAAGGCAGTTATTTTTGGAGAGAAGACTTGACCATCTCTACTCCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS-3UTR CCA 90 bp | AGAGATGGTCAAGTCTTCTCTCCAAAAATAACTGCCTTTAATGTGAGTCAGCCCCATCCACGGGGGCATTaGGCATCACGTAGGAACGTA | + |
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Preference number: 4 (lower is better) Translates to: RDGQVFSPKITAFNVSQPHPRGH*ASRRNV Trigger: TACGTTCCTACGTGATGCCCAATGCCCCCGTGGATG...GGGCTGACTCACATTAAAGGCAGTTATTTTTGGAGAGAAGACTTGACCATCTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS-3UTR TCA 90 bp | GGGAGTAGAGATGGTCAAGTCTTCTCTCCAAAAATAACTGCCTTTAATGTGAGTCCAGGATCAGCACCTTaGAGAAGTGTGTGGGCACTG | + |
|
Preference number: 4 (lower is better) Translates to: GSRDGQVFSPKITAFNVSPGSAP*RSVWAL Trigger: CAGTGCCCACACACTTCTTCAAGGTGCTGATCCTGG...ACTCACATTAAAGGCAGTTATTTTTGGAGAGAAGACTTGACCATCTCTACTCCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS CCA 90 bp | GCGGAAGTCGCAGGCGCTACGGTCCCCGTCGCCACGGAGCCGCTCTaGCCTCAGCTGCTCCAACACCCAGAGCGCACCGCGCGTGCGCGG | + |
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Preference number: 5 (lower is better) Translates to: AEVAGATVPVATEPL*PQLLQHPERTARAR Trigger: CCGCGCACGCGCGGTGCGCTCTGGGTGTTGGAGCAGCTGAGGCCAGAGCGGCTCCGTGGCGACGGGGACCGTAGCGCCTGCGACTTCCGC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS GCA 90 bp | AGCGGTGGTTGGCGGCGGCGGCCAAATGGCCGCGGTCAAAGCCACTaGCGCGGTAGTCCGCATTGGTGGCGCGGTGGTACGCGTGCACAG | + |
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Preference number: 5 (lower is better) Translates to: SGGWRRRPNGRGQSH*RGSPHWWRGGTRAQ Trigger: CTGTGCACGCGTACCACCGCGCCACCAATGCGGACTACCGCGGCAGTGGCTTTGACCGCGGCCATTTGGCCGCCGCCGCCAACCACCGCT 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS CCA 90 bp | TCAGGTAGAAGGTGTCGTCCATGGCCCGCTGACTCCAGCGGTGGTTaGCGGCGGCGGCCAAATGGCCGCGGTCAAAGCCACTGCCGCGGT | + |
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Preference number: 5 (lower is better) Translates to: SGRRCRPWPADSSGG*RRRPNGRGQSHCRG Trigger: ACCGCGGCAGTGGCTTTGACCGCGGCCATTTGGCCGCCGCCGCCAACCACCGCTGGAGTCAGCGGGCCATGGACGACACCTTCTACCTGA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS CCA 90 bp | GTGGCACCTGAGGCGCTACGTTGCTCAGGTAGAAGGTGTCGTCCATaGCCCGCTGACTCCAGCGGTGGTTGGCGGCGGCGGCCAAATGGC | + |
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Preference number: 5 (lower is better) Translates to: VAPEALRCSGRRCRP*PADSSGGWRRRPNG Trigger: GCCATTTGGCCGCCGCCGCCAACCACCGCTGGAGTCAGCGGGCCATGGACGACACCTTCTACCTGAGCAACGTAGCGCCTCAGGTGCCAC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS CCA 90 bp | CCAAATGGCCGCGGTCAAAGCCACTGCCGCGGTAGTCCGCATTGGTaGCGCGGTGGTACGCGTGCACAGAGTCATCCTCGCGGAAGTCGC | + |
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Preference number: 5 (lower is better) Translates to: PNGRGQSHCRGSPHW*RGGTRAQSHPRGSR Trigger: GCGACTTCCGCGAGGATGACTCTGTGCACGCGTACCACCGCGCCACCAATGCGGACTACCGCGGCAGTGGCTTTGACCGCGGCCATTTGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS CCA 90 bp | CGGCCAAATGGCCGCGGTCAAAGCCACTGCCGCGGTAGTCCGCATTaGTGGCGCGGTGGTACGCGTGCACAGAGTCATCCTCGCGGAAGT | + |
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Preference number: 5 (lower is better) Translates to: RPNGRGQSHCRGSPH*WRGGTRAQSHPRGS Trigger: ACTTCCGCGAGGATGACTCTGTGCACGCGTACCACCGCGCCACCAATGCGGACTACCGCGGCAGTGGCTTTGACCGCGGCCATTTGGCCG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS CCA 90 bp | GCACCAGGAACCGCTCCAGAGGGATGGTCTCATCCACGGGGGCATTaGGCATCACGTAGGAACGTAGCTCGATCTGCCCACCGGCTGCCT | + |
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Preference number: 5 (lower is better) Translates to: APGTAPEGWSHPRGH*ASRRNVARSAHRLP Trigger: AGGCAGCCGGTGGGCAGATCGAGCTACGTTCCTACGTGATGCCCAATGCCCCCGTGGATGAGACCATCCCTCTGGAGCGGTTCCTGGTGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS CCA 90 bp | TATTGGGCACGAAGAGCAATCCCGAGGCCCGCTCGATGCTCTCGATaGGCACCAGGAACCGCTCCAGAGGGATGGTCTCATCCACGGGGG | + |
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Preference number: 5 (lower is better) Translates to: YWARRAIPRPARCSR*APGTAPEGWSHPRG Trigger: CCCCCGTGGATGAGACCATCCCTCTGGAGCGGTTCCTGGTGCCCATCGAGAGCATCGAGCGGGCCTCGGGATTGCTCTTCGTGCCCAATA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS CCA 90 bp | CCCGCTCGATGCTCTCGATGGGCACCAGGAACCGCTCCAGAGGGATaGTCTCATCCACGGGGGCATTGGGCATCACGTAGGAACGTAGCT | + |
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Preference number: 5 (lower is better) Translates to: PARCSRWAPGTAPEG*SHPRGHWASRRNVA Trigger: AGCTACGTTCCTACGTGATGCCCAATGCCCCCGTGGATGAGACCATCCCTCTGGAGCGGTTCCTGGTGCCCATCGAGAGCATCGAGCGGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS GCA 90 bp | GAGCCAGAATATTGGGCACGAAGAGCAATCCCGAGGCCCGCTCGATaGTCTCGATGGGCACCAGGAACCGCTCCAGAGGGATGGTCTCAT | + |
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Preference number: 5 (lower is better) Translates to: EPEYWARRAIPRPAR*SRWAPGTAPEGWSH Trigger: ATGAGACCATCCCTCTGGAGCGGTTCCTGGTGCCCATCGAGAGCATCGAGCGGGCCTCGGGATTGCTCTTCGTGCCCAATATTCTGGCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS-3UTR CAA 90 bp | GTCTTCTCTCCAAAAATAACTGCCTTTAATGTGAGTCAGCCCATCTCCCCAGGGCCGGGCAGCCCGTACTaGGCCAGTTCCCCGGTGCCG | + |
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Preference number: 5 (lower is better) Translates to: VFSPKITAFNVSQPISPGPGSPY*ASSPVP Trigger: CGGCACCGGGGAACTGGCCAAGTACGGGCTGCCCGG...CCCTGGGGAGATGGGCTGACTCACATTAAAGGCAGTTATTTTTGGAGAGAAGAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS-3UTR CAA 90 bp | GGTCAAGTCTTCTCTCCAAAAATAACTGCCTTTAATGTGAGTCAGCCCATCTCCCTGTACCTCTCAAGGTaGTTCCAGGCATTCTGGTTG | + |
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Preference number: 5 (lower is better) Translates to: GQVFSPKITAFNVSQPISLYLSR*FQAFWL Trigger: CAACCAGAATGCCTGGAACAACCTTGAGAGGTACAG...GGAGATGGGCTGACTCACATTAAAGGCAGTTATTTTTGGAGAGAAGACTTGACC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS-3UTR CAA 90 bp | AGTAGAGATGGTCAAGTCTTCTCTCCAAAAATAACTGCCTTTAATGTGAGTCAGGCAGACATAGACATTTaGGTAAGTTCGCGTCAAGCT | + |
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Preference number: 5 (lower is better) Translates to: SRDGQVFSPKITAFNVSQADIDI*VSSRQA Trigger: AGCTTGACGCGAACTTACCAAAATGTCTATGTCTGC...CTGACTCACATTAAAGGCAGTTATTTTTGGAGAGAAGACTTGACCATCTCTACT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS GCA 72 bp | GCAACAATGGCACTCGGCCCAGCAGCCCCGGCGCTTTaGCCTCCCGCCGCCGCCAATGCTCTGCCGCGGCGC | + |
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Preference number: 6 (lower is better) Translates to: ATMALGPAAPAL*PPAAANALPRR Trigger: GCGCCGCGGCAGAGCATTGGCGGCGGCGGGAGGGCAAAGCGCCGGGGCTGCTGGGCCGAGTGCCATTGTTGC 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS CCA 72 bp | GCAGGCGCTACGGTCCCCGTCGCCACGGAGCCGCTCTaGCCTCAGCTGCTCCAACACCCAGAGCGCACCGCG | + |
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Preference number: 6 (lower is better) Translates to: AGATVPVATEPL*PQLLQHPERTA Trigger: CGCGGTGCGCTCTGGGTGTTGGAGCAGCTGAGGCCAGAGCGGCTCCGTGGCGACGGGGACCGTAGCGCCTGC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS CCA 72 bp | CAGCGCGGGAAGATCGGCCGCGACCACCGGCAACAATaGCACTCGGCCCAGCAGCCCCGGCGCTTTGCCCTC | + |
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Preference number: 6 (lower is better) Translates to: QRGKIGRDHRQQ*HSAQQPRRFAL Trigger: GAGGGCAAAGCGCCGGGGCTGCTGGGCCGAGTGCCATTGTTGCCGGTGGTCGCGGCCGATCTTCCCGCGCTG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS GCA 72 bp | TGGCGGCGGCGGCCAAATGGCCGCGGTCAAAGCCACTaGCGCGGTAGTCCGCATTGGTGGCGCGGTGGTACG | + |
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Preference number: 6 (lower is better) Translates to: WRRRPNGRGQSH*RGSPHWWRGGT Trigger: CGTACCACCGCGCCACCAATGCGGACTACCGCGGCAGTGGCTTTGACCGCGGCCATTTGGCCGCCGCCGCCA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS CCA 72 bp | AGGTGTCGTCCATGGCCCGCTGACTCCAGCGGTGGTTaGCGGCGGCGGCCAAATGGCCGCGGTCAAAGCCAC | + |
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Preference number: 6 (lower is better) Translates to: RCRPWPADSSGG*RRRPNGRGQSH Trigger: GTGGCTTTGACCGCGGCCATTTGGCCGCCGCCGCCAACCACCGCTGGAGTCAGCGGGCCATGGACGACACCT 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS CCA 72 bp | CGCGGTCAAAGCCACTGCCGCGGTAGTCCGCATTGGTaGCGCGGTGGTACGCGTGCACAGAGTCATCCTCGC | + |
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Preference number: 6 (lower is better) Translates to: RGQSHCRGSPHW*RGGTRAQSHPR Trigger: GCGAGGATGACTCTGTGCACGCGTACCACCGCGCCACCAATGCGGACTACCGCGGCAGTGGCTTTGACCGCG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS CCA 72 bp | GGCCGCGGTCAAAGCCACTGCCGCGGTAGTCCGCATTaGTGGCGCGGTGGTACGCGTGCACAGAGTCATCCT | + |
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Preference number: 6 (lower is better) Translates to: GRGQSHCRGSPH*WRGGTRAQSHP Trigger: AGGATGACTCTGTGCACGCGTACCACCGCGCCACCAATGCGGACTACCGCGGCAGTGGCTTTGACCGCGGCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS GCA 72 bp | TATTGGGCACGAAGAGCAATCCCGAGGCCCGCTCGATaGTCTCGATGGGCACCAGGAACCGCTCCAGAGGGA | + |
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Preference number: 6 (lower is better) Translates to: YWARRAIPRPAR*SRWAPGTAPEG Trigger: TCCCTCTGGAGCGGTTCCTGGTGCCCATCGAGAGCATCGAGCGGGCCTCGGGATTGCTCTTCGTGCCCAATA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS CCA 72 bp | TGCTCTCGATGGGCACCAGGAACCGCTCCAGAGGGATaGTCTCATCCACGGGGGCATTGGGCATCACGTAGG | + |
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Preference number: 6 (lower is better) Translates to: CSRWAPGTAPEG*SHPRGHWASRR Trigger: CCTACGTGATGCCCAATGCCCCCGTGGATGAGACCATCCCTCTGGAGCGGTTCCTGGTGCCCATCGAGAGCA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS CCA 72 bp | CGAAGAGCAATCCCGAGGCCCGCTCGATGCTCTCGATaGGCACCAGGAACCGCTCCAGAGGGATGGTCTCAT | + |
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Preference number: 6 (lower is better) Translates to: RRAIPRPARCSR*APGTAPEGWSH Trigger: ATGAGACCATCCCTCTGGAGCGGTTCCTGGTGCCCATCGAGAGCATCGAGCGGGCCTCGGGATTGCTCTTCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS TCA 72 bp | CGATCTGCCCACCGGCTGCCTCCAGGATCAGCACCTTaGAGAAGTGTGTGGGCACTGCCACGTGGTTCTTCC | + |
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Preference number: 6 (lower is better) Translates to: RSAHRLPPGSAP*RSVWALPRGSS Trigger: GGAAGAACCACGTGGCAGTGCCCACACACTTCTTCAAGGTGCTGATCCTGGAGGCAGCCGGTGGGCAGATCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS CCA 72 bp | ACCGCTCCAGAGGGATGGTCTCATCCACGGGGGCATTaGGCATCACGTAGGAACGTAGCTCGATCTGCCCAC | + |
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Preference number: 6 (lower is better) Translates to: TAPEGWSHPRGH*ASRRNVARSAH Trigger: GTGGGCAGATCGAGCTACGTTCCTACGTGATGCCCAATGCCCCCGTGGATGAGACCATCCCTCTGGAGCGGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS CAA 72 bp | TCGATCTGCCCACCGGCTGCCTCCAGGATCAGCACCTaGAAGAAGTGTGTGGGCACTGCCACGTGGTTCTTC | + |
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Preference number: 6 (lower is better) Translates to: SICPPAASRIST*KKCVGTATWFF Trigger: GAAGAACCACGTGGCAGTGCCCACACACTTCTTCAAGGTGCTGATCCTGGAGGCAGCCGGTGGGCAGATCGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS CAA 90 bp | GAACGTAGCTCGATCTGCCCACCGGCTGCCTCCAGGATCAGCACCTaGAAGAAGTGTGTGGGCACTGCCACGTGGTTCTTCCCAATAACC | + |
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Preference number: 6 (lower is better) Translates to: ERSSICPPAASRIST*KKCVGTATWFFPIT Trigger: GGTTATTGGGAAGAACCACGTGGCAGTGCCCACACACTTCTTCAAGGTGCTGATCCTGGAGGCAGCCGGTGGGCAGATCGAGCTACGTTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS CAA 90 bp | CTGCCAGCAGTGATAGCCTTGAGGTTTCCAGCTCGAGCCAGAATATaGGGCACGAAGAGCAATCCCGAGGCCCGCTCGATGCTCTCGATG | + |
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Preference number: 6 (lower is better) Translates to: LPAVIALRFPARARI*GTKSNPEARSMLSM Trigger: CATCGAGAGCATCGAGCGGGCCTCGGGATTGCTCTTCGTGCCCAATATTCTGGCTCGAGCTGGAAACCTCAAGGCTATCACTGCTGGCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS TCA 72 bp | GGCTGTACCTCTCAAGGTTGTTCCAGGCATTCTGGTTaGGGTGTGGCACCTGAGGCGCTACGTTGCTCAGGT | + |
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Preference number: 6 (lower is better) Translates to: GCTSQGCSRHSG*GVAPEALRCSG Trigger: ACCTGAGCAACGTAGCGCCTCAGGTGCCACACCTCAACCAGAATGCCTGGAACAACCTTGAGAGGTACAGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS CAA 72 bp | GGGCAGGAAAAGCGGCCCCGTGCAGACATAGACATTTaGGTAAGTTCGCGTCAAGCTGCGGCTGTACCTCTC | + |
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Preference number: 6 (lower is better) Translates to: GQEKRPRADIDI*VSSRQAAAVPL Trigger: GAGAGGTACAGCCGCAGCTTGACGCGAACTTACCAAAATGTCTATGTCTGCACGGGGCCGCTTTTCCTGCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS CAA 90 bp | CTCGGTCCTGGGCAGGAAAAGCGGCCCCGTGCAGACATAGACATTTaGGTAAGTTCGCGTCAAGCTGCGGCTGTACCTCTCAAGGTTGTT | + |
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Preference number: 6 (lower is better) Translates to: LGPGQEKRPRADIDI*VSSRQAAAVPLKVV Trigger: AACAACCTTGAGAGGTACAGCCGCAGCTTGACGCGAACTTACCAAAATGTCTATGTCTGCACGGGGCCGCTTTTCCTGCCCAGGACCGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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| CDS GCA 72 bp | TGCAGACATAGACATTTTGGTAAGTTCGCGTCAAGCTaGGGCTGTACCTCTCAAGGTTGTTCCAGGCATTCT | + |
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Preference number: 6 (lower is better) Translates to: CRHRHFGKFASS*GCTSQGCSRHS Trigger: AGAATGCCTGGAACAACCTTGAGAGGTACAGCCGCAGCTTGACGCGAACTTACCAAAATGTCTATGTCTGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015481.6 |
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