Pregenerated sensors for EMX1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000033726Ensembl transcript IDs: ENSMUST00000045942.9
Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CCCAGGCCTCAGCCAGCCCATTCTCTTGTCCCTCTGACAGTGATGGCCCCAGGCAGCCCTGTGGGGCCGTaGCTCGAGGCCTCCCTGCAG | + |
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Preference number: 2 (lower is better) Translates to: PRPQPAHSLVPLTVMAPGSPVGP*LEASLQ Trigger: CTGCAGGGAGGCCTCGAGTCACGGCCCCACAGGGCT...GCCTGGGGCCATCACTGTCAGAGGGACAAGAGAATGGGCTGGCTGAGGCCTGGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| 3UTR-3UTR CCA 90 bp | CCAAGCAGCAGGCTCTCCACCAGAAGGCTGAGCAGTCCCAGGCCTCAGCCAGCCCCAGCATGGGCCCCCTaGAGCCTTGGCCAGCAGCAA | + |
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Preference number: 2 (lower is better) Translates to: PSSRLSTRRLSSPRPQPAPAWAP*SLGQQQ Trigger: TTGCTGCTGGCCAAGGCTCCAGGGGGCCCATGCTGG...GGCTGGCTGAGGCCTGGGACTGCTCAGCCTTCTGGTGGAGAGCCTGCTGCTTGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| 3UTR-3UTR GCA 90 bp | CCAAGCAGCAGGCTCTCCACCAGAAGGCTGAGCAGTCCCAGGCCTCAGCCAGCCGACTCGAGGCCTCCCTaGAGCCTGGCTAAGGAGTGG | + |
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Preference number: 2 (lower is better) Translates to: PSSRLSTRRLSSPRPQPADSRPP*SLAKEW Trigger: CCACTCCTTAGCCAGGCTGCAGGGAGGCCTCGAGTC...GGCTGGCTGAGGCCTGGGACTGCTCAGCCTTCTGGTGGAGAGCCTGCTGCTTGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| 3UTR-3UTR CCA 90 bp | CAGAAGGCTGAGCAGTCCCAGGCCTCAGCCAGCCCATTCTCTTGTCCCTCTGACGGCCAGAGTCCAGCATaGGCCCCCTGGAGCCTTGGC | + |
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Preference number: 2 (lower is better) Translates to: QKAEQSQASASPFSCPSDGQSPA*APWSLG Trigger: GCCAAGGCTCCAGGGGGCCCATGCTGGACTCTGGCC...GTCAGAGGGACAAGAGAATGGGCTGGCTGAGGCCTGGGACTGCTCAGCCTTCTG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| 3UTR-3UTR GCA 90 bp | AGCCCATTCTCTTGTCCCTCTGACAGTGATGGCCCCAGGCTCCAAGCCCTGTGGGCCAGCAGCAAGCAATaGCCTGCCCTTGTGGGCTCT | + |
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Preference number: 2 (lower is better) Translates to: SPFSCPSDSDGPRLQALWASSKQ*PALVGS Trigger: AGAGCCCACAAGGGCAGGGCATTGCTTGCTGCTGGC...CCACAGGGCTTGGAGCCTGGGGCCATCACTGTCAGAGGGACAAGAGAATGGGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| 3UTR-3UTR CAA 90 bp | GGCCCCAGGCTCCAAGCCCTGTGGGGCCGTGACTCGAGGCCTCCCTGCAGCCTGGGGCCCCCTGGAGCCTaGGCCAGCAGCAAGCAATGC | + |
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Preference number: 3 (lower is better) Translates to: GPRLQALWGRDSRPPCSLGPPGA*ASSKQC Trigger: GCATTGCTTGCTGCTGGCCAAGGCTCCAGGGGGCCC...CAGGCTGCAGGGAGGCCTCGAGTCACGGCCCCACAGGGCTTGGAGCCTGGGGCC 72% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| 3UTR CCA 72 bp | CCCTCTGACAGTGATGGCCCCAGGCTCCAAGCCCTGTaGGGCCGTGACTCGAGGCCTCCCTGCAGCCTGGCT | + |
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Preference number: 3 (lower is better) Translates to: PSDSDGPRLQAL*GRDSRPPCSLA Trigger: AGCCAGGCTGCAGGGAGGCCTCGAGTCACGGCCCCACAGGGCTTGGAGCCTGGGGCCATCACTGTCAGAGGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS-3UTR CCA 90 bp | CCAGGCTCCAAGCCCTGTGGGGCCGTGACTCGAGGCCTCCCTGCAGCCTGGCTAGCCACAGCCAGTGGATaGGAGCCCGCGCCCCCGCTG | + |
|
Preference number: 4 (lower is better) Translates to: PGSKPCGAVTRGLPAAWLATASG*EPAPPL Trigger: CAGCGGGGGCGCGGGCTCCCATCCACTGGCTGTGGC...TAGCCAGGCTGCAGGGAGGCCTCGAGTCACGGCCCCACAGGGCTTGGAGCCTGG 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS-3UTR GCA 90 bp | GGCCCCAGGCTCCAAGCCCTGTGGGGCCGTGACTCGAGGCCTCCCTGCAGCCTGTCCAGCCGCAGCAGCTaGGAGGGCGAGAAGGCTGTG | + |
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Preference number: 4 (lower is better) Translates to: GPRLQALWGRDSRPPCSLSSRSS*EGEKAV Trigger: CACAGCCTTCTCGCCCTCGCAGCTGCTGCGGCTGGA...CAGGCTGCAGGGAGGCCTCGAGTCACGGCCCCACAGGGCTTGGAGCCTGGGGCC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS-3UTR GCA 90 bp | CTGACAGTGATGGCCCCAGGCTCCAAGCCCTGTGGGGCCGTGACTCGAGGCCTCAGGCTGCCTGCCAGCTaGTTCCGCTCGGCTCCCACC | + |
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Preference number: 4 (lower is better) Translates to: LTVMAPGSKPCGAVTRGLRLPAS*FRSAPT Trigger: GGTGGGAGCCGAGCGGAAGCAGCTGGCAGGCAGCCT...GAGGCCTCGAGTCACGGCCCCACAGGGCTTGGAGCCTGGGGCCATCACTGTCAG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS-3UTR CCA 90 bp | CACCCAAGCAGCAGGCTCTCCACCAGAAGGCTGAGCAGTCCCAGGCCTCAGCCATGCGGCCACAGCCAGTaGATGGGAGCCCGCGCCCCC | + |
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Preference number: 4 (lower is better) Translates to: HPSSRLSTRRLSSPRPQPCGHSQ*MGARAP Trigger: GGGGGCGCGGGCTCCCATCCACTGGCTGTGGCCGCA...TGGCTGAGGCCTGGGACTGCTCAGCCTTCTGGTGGAGAGCCTGCTGCTTGGGTG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS-3UTR GCA 90 bp | ACAGTGATGGCCCCAGGCTCCAAGCCCTGTGGGGCCGTGACTCGAGGCCTCCCTCAGGACTCCCGCCGGTaGCACCATCCTTGGCCACCA | + |
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Preference number: 4 (lower is better) Translates to: TVMAPGSKPCGAVTRGLPQDSRR*HHPWPP Trigger: TGGTGGCCAAGGATGGTGGCACCGGCGGGAGTCCTG...AGGGAGGCCTCGAGTCACGGCCCCACAGGGCTTGGAGCCTGGGGCCATCACTGT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS-3UTR CCA 90 bp | CCAAGCAGCAGGCTCTCCACCAGAAGGCTGAGCAGTCCCAGGCCTCAGCCAGCCGAGGAGGAGCCCAGCTaGTGTGCCGGGTGCACCGTC | + |
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Preference number: 4 (lower is better) Translates to: PSSRLSTRRLSSPRPQPAEEEPS*CAGCTV Trigger: GACGGTGCACCCGGCACACCAGCTGGGCTCCTCCTC...GGCTGGCTGAGGCCTGGGACTGCTCAGCCTTCTGGTGGAGAGCCTGCTGCTTGG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS-3UTR TCA 90 bp | ATGGGCCCCCTGGAGCCTTGGCCAGCAGCAAGCAATGCCCTGCCCTTGTGGGCTCCTGAGCGGTTCCTCTaGTGCGGCCACAGCCAGTGG | + |
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Preference number: 4 (lower is better) Translates to: MGPLEPWPAASNALPLWAPERFL*CGHSQW Trigger: CCACTGGCTGTGGCCGCATCAGAGGAACCGCTCAGG...AGCCCACAAGGGCAGGGCATTGCTTGCTGCTGGCCAAGGCTCCAGGGGGCCCAT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS-3UTR GCA 90 bp | CCCAGGCCTCAGCCAGCCCATTCTCTTGTCCCTCTGACAGTGATGGCCCCAGGCGGAGCCCAGCTGGTGTaGCGGGTGCACCGTCAGAGC | + |
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Preference number: 4 (lower is better) Translates to: PRPQPAHSLVPLTVMAPGGAQLV*RVHRQS Trigger: GCTCTGACGGTGCACCCGGCACACCAGCTGGGCTCC...GCCTGGGGCCATCACTGTCAGAGGGACAAGAGAATGGGCTGGCTGAGGCCTGGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS-3UTR CCA 90 bp | CCAGGCTCCAAGCCCTGTGGGGCCGTGACTCGAGGCCTCCCTGCAGCCTGGCTAGAGCCGGGTGGTTCATaGCCTCTGGGAACACCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: PGSKPCGAVTRGLPAAWLEPGGS*PLGTPA Trigger: AGCTGGTGTTCCCAGAGGCCATGAACCACCCGGCTC...TAGCCAGGCTGCAGGGAGGCCTCGAGTCACGGCCCCACAGGGCTTGGAGCCTGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS-3UTR GCA 90 bp | CCCAGGCCTCAGCCAGCCCATTCTCTTGTCCCTCTGACAGTGATGGCCCCAGGCCGTGCGAAGGGCCCGTaGAAAAGCAGCCCGTCCTGG | + |
|
Preference number: 4 (lower is better) Translates to: PRPQPAHSLVPLTVMAPGRAKGP*KSSPSW Trigger: CCAGGACGGGCTGCTTTTGCACGGGCCCTTCGCACG...GCCTGGGGCCATCACTGTCAGAGGGACAAGAGAATGGGCTGGCTGAGGCCTGGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS-3UTR GCA 90 bp | GTCCAGCATGGGCCCCCTGGAGCCTTGGCCAGCAGCAAGCAATGCCCTGCCCTTGAATCCGCTTGGGCTTaGGTGCGAAGGGCCCGTGCA | + |
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Preference number: 4 (lower is better) Translates to: VQHGPPGALASSKQCPALESAWA*VRRARA Trigger: TGCACGGGCCCTTCGCACGCAAGCCCAAGCGGATTC...AAGGGCAGGGCATTGCTTGCTGCTGGCCAAGGCTCCAGGGGGCCCATGCTGGAC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS-3UTR CCA 90 bp | CCAAGCAGCAGGCTCTCCACCAGAAGGCTGAGCAGTCCCAGGCCTCAGCCAGCCCTGTGCGAATCCGCTTaGGCTTGCGTGCGAAGGGCC | + |
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Preference number: 4 (lower is better) Translates to: PSSRLSTRRLSSPRPQPALCESA*ACVRRA Trigger: GGCCCTTCGCACGCAAGCCCAAGCGGATTCGCACAG...GGCTGGCTGAGGCCTGGGACTGCTCAGCCTTCTGGTGGAGAGCCTGCTGCTTGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS-3UTR CCA 90 bp | ACAGTGATGGCCCCAGGCTCCAAGCCCTGTGGGGCCGTGACTCGAGGCCTCCCTCGGTGCCACCATCCTTaGCCACCAAGGACTCTATGG | + |
|
Preference number: 4 (lower is better) Translates to: TVMAPGSKPCGAVTRGLPRCHHP*PPRTLW Trigger: CCATAGAGTCCTTGGTGGCCAAGGATGGTGGCACCG...AGGGAGGCCTCGAGTCACGGCCCCACAGGGCTTGGAGCCTGGGGCCATCACTGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS-3UTR TCA 90 bp | AGTCCAGCATGGGCCCCCTGGAGCCTTGGCCAGCAGCAAGCAATGCCCTGCCCTCGATGCGCCACCGGTTaGTATGGTGGGAACCCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: SPAWAPWSLGQQQAMPCPRCATG*YGGNPS Trigger: AGAAGGGTTCCCACCATATCAACCGGTGGCGCATCG...AGGGCAGGGCATTGCTTGCTGCTGGCCAAGGCTCCAGGGGGCCCATGCTGGACT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS-3UTR GCA 90 bp | AGTCCAGCATGGGCCCCCTGGAGCCTTGGCCAGCAGCAAGCAATGCCCTGCCCTAACCACACCTTCACCTaGGTCTCGGAGAGGCTGAGG | + |
|
Preference number: 4 (lower is better) Translates to: SPAWAPWSLGQQQAMPCPNHTFT*VSERLR Trigger: CCTCAGCCTCTCCGAGACGCAGGTGAAGGTGTGGTT...AGGGCAGGGCATTGCTTGCTGCTGGCCAAGGCTCCAGGGGGCCCATGCTGGACT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS-3UTR CCA 90 bp | GTGATGGGCGGTCCACCCAAGCAGCAGGCTCTCCACCAGAAGGCTGAGCAGTCCACCGTCAGAGCCGGGTaGTTCATGGCCTCTGGGAAC | + |
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Preference number: 4 (lower is better) Translates to: VMGGPPKQQALHQKAEQSTVRAG*FMASGN Trigger: GTTCCCAGAGGCCATGAACCACCCGGCTCTGACGGT...GGACTGCTCAGCCTTCTGGTGGAGAGCCTGCTGCTTGGGTGGACCGCCCATCAC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS-3UTR CCA 90 bp | CCCAGGCCTCAGCCAGCCCATTCTCTTGTCCCTCTGACAGTGATGGCCCCAGGCAAAAGCAGCCCGTCCTaGGGAACGTCGCTTGCCTGG | + |
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Preference number: 4 (lower is better) Translates to: PRPQPAHSLVPLTVMAPGKSSPS*GTSLAW Trigger: CCAGGCAAGCGACGTTCCCCAGGACGGGCTGCTTTT...GCCTGGGGCCATCACTGTCAGAGGGACAAGAGAATGGGCTGGCTGAGGCCTGGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS-3UTR CCA 90 bp | GTGATGGGCGGTCCACCCAAGCAGCAGGCTCTCCACCAGAAGGCTGAGCAGTCCCAATGTCCTCCCCGTTaGCCTGCTTCGTGGCGATGC | + |
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Preference number: 4 (lower is better) Translates to: VMGGPPKQQALHQKAEQSQCPPR*PASWRC Trigger: GCATCGCCACGAAGCAGGCCAACGGGGAGGACATTG...GGACTGCTCAGCCTTCTGGTGGAGAGCCTGCTGCTTGGGTGGACCGCCCATCAC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS-3UTR GCA 90 bp | CACCCAAGCAGCAGGCTCTCCACCAGAAGGCTGAGCAGTCCCAGGCCTCAGCCATGGAGAGGGTCCCGATaGTGGGCGCTGAAGAAAGAG | + |
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Preference number: 4 (lower is better) Translates to: HPSSRLSTRRLSSPRPQPWRGSR*WALKKE Trigger: CTCTTTCTTCAGCGCCCAGCATCGGGACCCTCTCCA...TGGCTGAGGCCTGGGACTGCTCAGCCTTCTGGTGGAGAGCCTGCTGCTTGGGTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS-3UTR GCA 90 bp | CAGAAGGCTGAGCAGTCCCAGGCCTCAGCCAGCCCATTCTCTTGTCCCTCTGACCCGCTTGGGCTTGCGTaGGAAGGGCCCGTGCAAAAG | + |
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Preference number: 4 (lower is better) Translates to: QKAEQSQASASPFSCPSDPLGLA*EGPVQK Trigger: CTTTTGCACGGGCCCTTCGCACGCAAGCCCAAGCGG...GTCAGAGGGACAAGAGAATGGGCTGGCTGAGGCCTGGGACTGCTCAGCCTTCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS-3UTR GCA 90 bp | CCAAGCAGCAGGCTCTCCACCAGAAGGCTGAGCAGTCCCAGGCCTCAGCCAGCCGAACCCTTCTTCTTCTaGTCAGACTCCGGCCCTTCC | + |
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Preference number: 4 (lower is better) Translates to: PSSRLSTRRLSSPRPQPAEPFFF*SDSGPS Trigger: GGAAGGGCCGGAGTCTGAGCAGAAGAAGAAGGGTTC...GGCTGGCTGAGGCCTGGGACTGCTCAGCCTTCTGGTGGAGAGCCTGCTGCTTGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS-3UTR CCA 90 bp | CATGGGCCCCCTGGAGCCTTGGCCAGCAGCAAGCAATGCCCTGCCCTTGTGGGCCGCCACCGGTTGATATaGTGGGAACCCTTCTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: HGPPGALASSKQCPALVGRHRLI*WEPFFF Trigger: GAAGAAGAAGGGTTCCCACCATATCAACCGGTGGCG...GCCCACAAGGGCAGGGCATTGCTTGCTGCTGGCCAAGGCTCCAGGGGGCCCATG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS-3UTR CCA 90 bp | CATGGGCCCCCTGGAGCCTTGGCCAGCAGCAAGCAATGCCCTGCCCTTGTGGGCCACCGGTTGATATGGTaGGAACCCTTCTTCTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: HGPPGALASSKQCPALVGHRLIW*EPFFFC Trigger: GCAGAAGAAGAAGGGTTCCCACCATATCAACCGGTG...GCCCACAAGGGCAGGGCATTGCTTGCTGCTGGCCAAGGCTCCAGGGGGCCCATG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS-3UTR CCA 90 bp | AGTCCCAGGCCTCAGCCAGCCCATTCTCTTGTCCCTCTGACAGTGATGGCCCCACTTGCCTGGAAGCGGTaGCCAAAGAAGCGATTCCGA | + |
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Preference number: 4 (lower is better) Translates to: SPRPQPAHSLVPLTVMAPLAWKR*PKKRFR Trigger: TCGGAATCGCTTCTTTGGCCACCGCTTCCAGGCAAG...TGGGGCCATCACTGTCAGAGGGACAAGAGAATGGGCTGGCTGAGGCCTGGGACT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS-3UTR GCA 90 bp | GCCTCAGCCAGCCCATTCTCTTGTCCCTCTGACAGTGATGGCCCCAGGCTCCAATCCTCTTCCAGCTTCTaGCGTTTGTATTTTGTCCTC | + |
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Preference number: 4 (lower is better) Translates to: ASASPFSCPSDSDGPRLQSSSSF*RLYFVL Trigger: GAGGACAAAATACAAACGGCAGAAGCTGGAAGAGGA...TTGGAGCCTGGGGCCATCACTGTCAGAGGGACAAGAGAATGGGCTGGCTGAGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS GCA 90 bp | CCTCTGATGCGGCCACAGCCAGTGGATGGGAGCCCGCGCCCCCGCTaGCAGGACTCCCGCCGGTGCCACCATCCTTGGCCACCAAGGACT | + |
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Preference number: 5 (lower is better) Translates to: PLMRPQPVDGSPRPR*QDSRRCHHPWPPRT Trigger: AGTCCTTGGTGGCCAAGGATGGTGGCACCGGCGGGAGTCCTGGCAGCGGGGGCGCGGGCTCCCATCCACTGGCTGTGGCCGCATCAGAGG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS TCA 90 bp | ACTGGGGTGAGGATAGTTGAGCGCCGTGGGCCTGAGCGGTTCCTCTaGTGCGGCCACAGCCAGTGGATGGGAGCCCGCGCCCCCGCTGCC | + |
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Preference number: 5 (lower is better) Translates to: TGVRIVERRGPERFL*CGHSQWMGARAPAA Trigger: GGCAGCGGGGGCGCGGGCTCCCATCCACTGGCTGTGGCCGCATCAGAGGAACCGCTCAGGCCCACGGCGCTCAACTATCCTCACCCCAGT 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS CCA 90 bp | AGCCCAGCTGGTGTGCCGGGTGCACCGTCAGAGCCGGGTGGTTCATaGCCTCTGGGAACACCAGCTCCGGCCCTCCATAGAGCGAGCGGC | + |
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Preference number: 5 (lower is better) Translates to: SPAGVPGAPSEPGGS*PLGTPAPALHRASG Trigger: GCCGCTCGCTCTATGGAGGGCCGGAGCTGGTGTTCCCAGAGGCCATGAACCACCCGGCTCTGACGGTGCACCCGGCACACCAGCTGGGCT 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS CCA 90 bp | CCAGCCGCAGCAGCTGCGAGGGCGAGAAGGCTGTGCGAATCCGCTTaGGCTTGCGTGCGAAGGGCCCGTGCAAAAGCAGCCCGTCCTGGG | + |
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Preference number: 5 (lower is better) Translates to: PAAAAARARRLCESA*ACVRRARAKAARPG Trigger: CCCAGGACGGGCTGCTTTTGCACGGGCCCTTCGCACGCAAGCCCAAGCGGATTCGCACAGCCTTCTCGCCCTCGCAGCTGCTGCGGCTGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS-3UTR CAA 90 bp | GGCCCCAGGCTCCAAGCCCTGTGGGGCCGTGACTCGAGGCCTCCCTGCAGCCTGCCGGTGCCACCATCCTaGGCCACCAAGGACTCTATG | + |
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Preference number: 5 (lower is better) Translates to: GPRLQALWGRDSRPPCSLPVPPS*ATKDSM Trigger: CATAGAGTCCTTGGTGGCCAAGGATGGTGGCACCGG...CAGGCTGCAGGGAGGCCTCGAGTCACGGCCCCACAGGGCTTGGAGCCTGGGGCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS-3UTR CAA 90 bp | CCAAGCAGCAGGCTCTCCACCAGAAGGCTGAGCAGTCCCAGGCCTCAGCCAGCCCGAATCCGCTTGGGCTaGCGTGCGAAGGGCCCGTGC | + |
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Preference number: 5 (lower is better) Translates to: PSSRLSTRRLSSPRPQPARIRLG*RAKGPC Trigger: GCACGGGCCCTTCGCACGCAAGCCCAAGCGGATTCG...GGCTGGCTGAGGCCTGGGACTGCTCAGCCTTCTGGTGGAGAGCCTGCTGCTTGG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS-3UTR CAA 90 bp | GACAGTGATGGCCCCAGGCTCCAAGCCCTGTGGGGCCGTGACTCGAGGCCTCCCTCAATGTCCTCCCCGTaGGCCTGCTTCGTGGCGATG | + |
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Preference number: 5 (lower is better) Translates to: DSDGPRLQALWGRDSRPPSMSSP*ACFVAM Trigger: CATCGCCACGAAGCAGGCCAACGGGGAGGACATTGA...GGGAGGCCTCGAGTCACGGCCCCACAGGGCTTGGAGCCTGGGGCCATCACTGTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS-3UTR CAA 90 bp | CACCCAAGCAGCAGGCTCTCCACCAGAAGGCTGAGCAGTCCCAGGCCTCAGCCAGCTGTGCGAATCCGCTaGGGCTTGCGTGCGAAGGGC | + |
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Preference number: 5 (lower is better) Translates to: HPSSRLSTRRLSSPRPQPAVRIR*GLRAKG Trigger: GCCCTTCGCACGCAAGCCCAAGCGGATTCGCACAGC...TGGCTGAGGCCTGGGACTGCTCAGCCTTCTGGTGGAGAGCCTGCTGCTTGGGTG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS-3UTR CAA 90 bp | CACCCAAGCAGCAGGCTCTCCACCAGAAGGCTGAGCAGTCCCAGGCCTCAGCCAGCGATGCGCCACCGGTaGATATGGTGGGAACCCTTC | + |
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Preference number: 5 (lower is better) Translates to: HPSSRLSTRRLSSPRPQPAMRHR*IWWEPF Trigger: GAAGGGTTCCCACCATATCAACCGGTGGCGCATCGC...TGGCTGAGGCCTGGGACTGCTCAGCCTTCTGGTGGAGAGCCTGCTGCTTGGGTG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS CCA 90 bp | TCCCCGTTGGCCTGCTTCGTGGCGATGCGCCACCGGTTGATATGGTaGGAACCCTTCTTCTTCTGCTCAGACTCCGGCCCTTCCTCTTCC | + |
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Preference number: 5 (lower is better) Translates to: SPLACFVAMRHRLIW*EPFFFCSDSGPSSS Trigger: GGAAGAGGAAGGGCCGGAGTCTGAGCAGAAGAAGAAGGGTTCCCACCATATCAACCGGTGGCGCATCGCCACGAAGCAGGCCAACGGGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS CCA 90 bp | TCCTCCCCGTTGGCCTGCTTCGTGGCGATGCGCCACCGGTTGATATaGTGGGAACCCTTCTTCTTCTGCTCAGACTCCGGCCCTTCCTCT | + |
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Preference number: 5 (lower is better) Translates to: SSPLACFVAMRHRLI*WEPFFFCSDSGPSS Trigger: AGAGGAAGGGCCGGAGTCTGAGCAGAAGAAGAAGGGTTCCCACCATATCAACCGGTGGCGCATCGCCACGAAGCAGGCCAACGGGGAGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS-3UTR CAA 90 bp | GACAGTGATGGCCCCAGGCTCCAAGCCCTGTGGGGCCGTGACTCGAGGCCTCCCTCCAGCTTCTGCCGTTaGTATTTTGTCCTCCGATTC | + |
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Preference number: 5 (lower is better) Translates to: DSDGPRLQALWGRDSRPPSSFCR*YFVLRF Trigger: GAATCGGAGGACAAAATACAAACGGCAGAAGCTGGA...GGGAGGCCTCGAGTCACGGCCCCACAGGGCTTGGAGCCTGGGGCCATCACTGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS TCA 90 bp | CAATGTCCTCCCCGTTGGCCTGCTTCGTGGCGATGCGCCACCGGTTaGTATGGTGGGAACCCTTCTTCTTCTGCTCAGACTCCGGCCCTT | + |
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Preference number: 5 (lower is better) Translates to: QCPPRWPASWRCATG*YGGNPSSSAQTPAL Trigger: AAGGGCCGGAGTCTGAGCAGAAGAAGAAGGGTTCCCACCATATCAACCGGTGGCGCATCGCCACGAAGCAGGCCAACGGGGAGGACATTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS-3UTR CAA 90 bp | ACAGTGATGGCCCCAGGCTCCAAGCCCTGTGGGGCCGTGACTCGAGGCCTCCCTTCTGCCGTTTGTATTTaGTCCTCCGATTCTGGAACC | + |
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Preference number: 5 (lower is better) Translates to: TVMAPGSKPCGAVTRGLPSAVCI*SSDSGT Trigger: GGTTCCAGAATCGGAGGACAAAATACAAACGGCAGA...AGGGAGGCCTCGAGTCACGGCCCCACAGGGCTTGGAGCCTGGGGCCATCACTGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS GCA 72 bp | CGGCCACAGCCAGTGGATGGGAGCCCGCGCCCCCGCTaGCAGGACTCCCGCCGGTGCCACCATCCTTGGCCA | + |
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Preference number: 6 (lower is better) Translates to: RPQPVDGSPRPR*QDSRRCHHPWP Trigger: TGGCCAAGGATGGTGGCACCGGCGGGAGTCCTGGCAGCGGGGGCGCGGGCTCCCATCCACTGGCTGTGGCCG 75% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS TCA 72 bp | AGGATAGTTGAGCGCCGTGGGCCTGAGCGGTTCCTCTaGTGCGGCCACAGCCAGTGGATGGGAGCCCGCGCC | + |
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Preference number: 6 (lower is better) Translates to: RIVERRGPERFL*CGHSQWMGARA Trigger: GGCGCGGGCTCCCATCCACTGGCTGTGGCCGCATCAGAGGAACCGCTCAGGCCCACGGCGCTCAACTATCCT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS CAA 90 bp | GTGGAGAGGGTCCCGATGCTGGGCGCTGAAGAAAGAGTGAGGGGGTaGCAGCGAGGAGGAGCCCAGCTGGTGTGCCGGGTGCACCGTCAG | + |
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Preference number: 6 (lower is better) Translates to: VERVPMLGAEERVRG*QRGGAQLVCRVHRQ Trigger: CTGACGGTGCACCCGGCACACCAGCTGGGCTCCTCCTCGCTGCAACCCCCTCACTCTTTCTTCAGCGCCCAGCATCGGGACCCTCTCCAC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS GCA 72 bp | GTGCGAATCCGCTTGGGCTTGCGTGCGAAGGGCCCGTaGAAAAGCAGCCCGTCCTGGGGAACGTCGCTTGCC | + |
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Preference number: 6 (lower is better) Translates to: VRIRLGLRAKGP*KSSPSWGTSLA Trigger: GGCAAGCGACGTTCCCCAGGACGGGCTGCTTTTGCACGGGCCCTTCGCACGCAAGCCCAAGCGGATTCGCAC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS CCA 72 bp | GGTGTGCCGGGTGCACCGTCAGAGCCGGGTGGTTCATaGCCTCTGGGAACACCAGCTCCGGCCCTCCATAGA | + |
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Preference number: 6 (lower is better) Translates to: GVPGAPSEPGGS*PLGTPAPALHR Trigger: TCTATGGAGGGCCGGAGCTGGTGTTCCCAGAGGCCATGAACCACCCGGCTCTGACGGTGCACCCGGCACACC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS CCA 72 bp | GCAGCTGCGAGGGCGAGAAGGCTGTGCGAATCCGCTTaGGCTTGCGTGCGAAGGGCCCGTGCAAAAGCAGCC | + |
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Preference number: 6 (lower is better) Translates to: AAARARRLCESA*ACVRRARAKAA Trigger: GGCTGCTTTTGCACGGGCCCTTCGCACGCAAGCCCAAGCGGATTCGCACAGCCTTCTCGCCCTCGCAGCTGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS CCA 72 bp | TTGCGTGCGAAGGGCCCGTGCAAAAGCAGCCCGTCCTaGGGAACGTCGCTTGCCTGGAAGCGGTGGCCAAAG | + |
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Preference number: 6 (lower is better) Translates to: LRAKGPCKSSPS*GTSLAWKRWPK Trigger: CTTTGGCCACCGCTTCCAGGCAAGCGACGTTCCCCAGGACGGGCTGCTTTTGCACGGGCCCTTCGCACGCAA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS CAA 72 bp | CCCCCGCTGCCAGGACTCCCGCCGGTGCCACCATCCTaGGCCACCAAGGACTCTATGGTGAAACCCCGCTTA | + |
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Preference number: 6 (lower is better) Translates to: PPLPGLPPVPPS*ATKDSMVKPRL Trigger: TAAGCGGGGTTTCACCATAGAGTCCTTGGTGGCCAAGGATGGTGGCACCGGCGGGAGTCCTGGCAGCGGGGG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS CCA 72 bp | GCCTGCTTCGTGGCGATGCGCCACCGGTTGATATGGTaGGAACCCTTCTTCTTCTGCTCAGACTCCGGCCCT | + |
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Preference number: 6 (lower is better) Translates to: ACFVAMRHRLIW*EPFFFCSDSGP Trigger: AGGGCCGGAGTCTGAGCAGAAGAAGAAGGGTTCCCACCATATCAACCGGTGGCGCATCGCCACGAAGCAGGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS TCA 72 bp | CCCCGTTGGCCTGCTTCGTGGCGATGCGCCACCGGTTaGTATGGTGGGAACCCTTCTTCTTCTGCTCAGACT | + |
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Preference number: 6 (lower is better) Translates to: PRWPASWRCATG*YGGNPSSSAQT Trigger: AGTCTGAGCAGAAGAAGAAGGGTTCCCACCATATCAACCGGTGGCGCATCGCCACGAAGCAGGCCAACGGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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| CDS CCA 72 bp | TTGGCCTGCTTCGTGGCGATGCGCCACCGGTTGATATaGTGGGAACCCTTCTTCTTCTGCTCAGACTCCGGC | + |
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Preference number: 6 (lower is better) Translates to: LACFVAMRHRLI*WEPFFFCSDSG Trigger: GCCGGAGTCTGAGCAGAAGAAGAAGGGTTCCCACCATATCAACCGGTGGCGCATCGCCACGAAGCAGGCCAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045942.9 |
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