Pregenerated sensors for EMP3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040212Ensembl transcript IDs: ENSMUST00000038876.13, ENSMUST00000164119.3, ENSMUST00000210297.2, ENSMUST00000210939.2
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CGAGTGGAAAAGCCACCCAGGCCAGGGCGAAGCAGTAACCGAAGCTaGCCCCACTCGGGTGCTTGGCCAGGATCTCCTCGGTGTGGATGG | + |
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Preference number: 5 (lower is better) Translates to: RVEKPPRPGRSSNRS*PHSGAWPGSPRCGW Trigger: CCATCCACACCGAGGAGATCCTGGCCAAGCACCCGAGTGGGGGCAGCTTCGGTTACTGCTTCGCCCTGGCCTGGGTGGCTTTTCCACTCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000038876.13 ENSMUST00000164119.3 ENSMUST00000210297.2 |
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| CDS GCA 90 bp | CTCCTCGGTGTGGATGGCATAGATGAGTGCCCCGGAGAACACAGCTaGACTGGTGCAAAGCTGGCAGAGGCCGGTAGCGTAGAAGAGCCC | + |
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Preference number: 5 (lower is better) Translates to: LLGVDGIDECPGEHS*TGAKLAEAGSVEEP Trigger: GGGCTCTTCTACGCTACCGGCCTCTGCCAGCTTTGCACCAGTGCAGCTGTGTTCTCCGGGGCACTCATCTATGCCATCCACACCGAGGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000038876.13 ENSMUST00000164119.3 ENSMUST00000210297.2 ENSMUST00000210939.2 |
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| CDS CCA 90 bp | ACGTTTCCGCAGGTGGATGTAGACAGTGCCGCTGACCAGAGCGAGTaGAAAAGCCACCCAGGCCAGGGCGAAGCAGTAACCGAAGCTGCC | + |
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Preference number: 5 (lower is better) Translates to: TFPQVDVDSAADQSE*KSHPGQGEAVTEAA Trigger: GGCAGCTTCGGTTACTGCTTCGCCCTGGCCTGGGTGGCTTTTCCACTCGCTCTGGTCAGCGGCACTGTCTACATCCACCTGCGGAAACGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000038876.13 ENSMUST00000164119.3 ENSMUST00000210297.2 |
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| CDS TCA 90 bp | CACTCGGGTGCTTGGCCAGGATCTCCTCGGTGTGGATGGCATAGATaGGTGCCCCGGAGAACACAGCTGCACTGGTGCAAAGCTGGCAGA | + |
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Preference number: 5 (lower is better) Translates to: HSGAWPGSPRCGWHR*VPRRTQLHWCKAGR Trigger: TCTGCCAGCTTTGCACCAGTGCAGCTGTGTTCTCCGGGGCACTCATCTATGCCATCCACACCGAGGAGATCCTGGCCAAGCACCCGAGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000038876.13 ENSMUST00000164119.3 ENSMUST00000210297.2 ENSMUST00000210939.2 |
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| CDS TCA 90 bp | GCCTTCAGCCAGCCATTCTCACTGACGTTACTGCAGGCCCATGTTTaGGTGGTGGTGTTCCACGTGCAGTCATACCACAGGTTCAGGGAC | + |
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Preference number: 5 (lower is better) Translates to: AFSQPFSLTLLQAHV*VVVFHVQSYHRFRD Trigger: GTCCCTGAACCTGTGGTATGACTGCACGTGGAACACCACCACTCAAACATGGGCCTGCAGTAACGTCAGTGAGAATGGCTGGCTGAAGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038876.13 ENSMUST00000164119.3 ENSMUST00000210297.2 |
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| CDS GCA 72 bp | GTGGATGGCATAGATGAGTGCCCCGGAGAACACAGCTaGACTGGTGCAAAGCTGGCAGAGGCCGGTAGCGTA | + |
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Preference number: 6 (lower is better) Translates to: VDGIDECPGEHS*TGAKLAEAGSV Trigger: TACGCTACCGGCCTCTGCCAGCTTTGCACCAGTGCAGCTGTGTTCTCCGGGGCACTCATCTATGCCATCCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000038876.13 ENSMUST00000164119.3 ENSMUST00000210297.2 ENSMUST00000210939.2 |
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| CDS TCA 72 bp | GCTTGGCCAGGATCTCCTCGGTGTGGATGGCATAGATaGGTGCCCCGGAGAACACAGCTGCACTGGTGCAAA | + |
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Preference number: 6 (lower is better) Translates to: AWPGSPRCGWHR*VPRRTQLHWCK Trigger: TTTGCACCAGTGCAGCTGTGTTCTCCGGGGCACTCATCTATGCCATCCACACCGAGGAGATCCTGGCCAAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000038876.13 ENSMUST00000164119.3 ENSMUST00000210297.2 ENSMUST00000210939.2 |
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| CDS CCA 72 bp | CGTGCAGTCATACCACAGGTTCAGGGACTCTTTGTCTaGGAGAGTCCACCAGGACTTGTCCAAAGTGGCCAC | + |
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Preference number: 6 (lower is better) Translates to: RAVIPQVQGLFV*ESPPGLVQSGH Trigger: GTGGCCACTTTGGACAAGTCCTGGTGGACTCTCCCAGACAAAGAGTCCCTGAACCTGTGGTATGACTGCACG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038876.13 ENSMUST00000164119.3 ENSMUST00000210297.2 |
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| CDS CAA 90 bp | TGCCTTCAGCCAGCCATTCTCACTGACGTTACTGCAGGCCCATGTTaGAGTGGTGGTGTTCCACGTGCAGTCATACCACAGGTTCAGGGA | + |
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Preference number: 6 (lower is better) Translates to: CLQPAILTDVTAGPC*SGGVPRAVIPQVQG Trigger: TCCCTGAACCTGTGGTATGACTGCACGTGGAACACCACCACTCAAACATGGGCCTGCAGTAACGTCAGTGAGAATGGCTGGCTGAAGGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038876.13 ENSMUST00000164119.3 ENSMUST00000210297.2 |
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| CDS TCA 72 bp | CAGCCATTCTCACTGACGTTACTGCAGGCCCATGTTTaGGTGGTGGTGTTCCACGTGCAGTCATACCACAGG | + |
|
Preference number: 6 (lower is better) Translates to: QPFSLTLLQAHV*VVVFHVQSYHR Trigger: CCTGTGGTATGACTGCACGTGGAACACCACCACTCAAACATGGGCCTGCAGTAACGTCAGTGAGAATGGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038876.13 ENSMUST00000164119.3 ENSMUST00000210297.2 |
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| CDS CAA 72 bp | CCAGCCATTCTCACTGACGTTACTGCAGGCCCATGTTaGAGTGGTGGTGTTCCACGTGCAGTCATACCACAG | + |
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Preference number: 6 (lower is better) Translates to: PAILTDVTAGPC*SGGVPRAVIPQ Trigger: CTGTGGTATGACTGCACGTGGAACACCACCACTCAAACATGGGCCTGCAGTAACGTCAGTGAGAATGGCTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038876.13 ENSMUST00000164119.3 ENSMUST00000210297.2 |
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| CDS CAA 90 bp | GTGGTGGTGTTCCACGTGCAGTCATACCACAGGTTCAGGGACTCTTaGTCTGGGAGAGTCCACCAGGACTTGTCCAAAGTGGCCACAAAA | + |
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Preference number: 6 (lower is better) Translates to: VVVFHVQSYHRFRDS*SGRVHQDLSKVATK Trigger: TTTTGTGGCCACTTTGGACAAGTCCTGGTGGACTCTCCCAGACAAAGAGTCCCTGAACCTGTGGTATGACTGCACGTGGAACACCACCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038876.13 ENSMUST00000164119.3 ENSMUST00000210297.2 |
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| CDS GCA 72 bp | TACTGCAGGCCCATGTTTGAGTGGTGGTGTTCCACGTaGAGTCATACCACAGGTTCAGGGACTCTTTGTCTG | + |
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Preference number: 6 (lower is better) Translates to: YCRPMFEWWCST*SHTTGSGTLCL Trigger: CAGACAAAGAGTCCCTGAACCTGTGGTATGACTGCACGTGGAACACCACCACTCAAACATGGGCCTGCAGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038876.13 ENSMUST00000164119.3 ENSMUST00000210297.2 |
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| CDS CAA 72 bp | TTCCACGTGCAGTCATACCACAGGTTCAGGGACTCTTaGTCTGGGAGAGTCCACCAGGACTTGTCCAAAGTG | + |
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Preference number: 6 (lower is better) Translates to: FHVQSYHRFRDS*SGRVHQDLSKV Trigger: CACTTTGGACAAGTCCTGGTGGACTCTCCCAGACAAAGAGTCCCTGAACCTGTGGTATGACTGCACGTGGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000038876.13 ENSMUST00000164119.3 ENSMUST00000210297.2 |
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