Pregenerated sensors for EMP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022505Ensembl transcript IDs: ENSMUST00000078357.5
Found 85 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGAGTGGGCAGGGGAAGAGGGAAGGGCAGACTCCTACAAAGAGTCTaGTCCCAAAGACTGGCTTTCCCCACCTTTGGCCGTACCCACACC | + |
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Preference number: 1 (lower is better) Translates to: GVGRGRGKGRLLQRV*SQRLAFPTFGRTHT Trigger: GGTGTGGGTACGGCCAAAGGTGGGGAAAGCCAGTCTTTGGGAGCAGACTCTTTGTAGGAGTCTGCCCTTCCCTCTTCCCCTGCCCACTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR CCA 90 bp | GAGGAGGCTGTCCAGCCCACCTTCCAGGCTTGTATGGCCTGGGAATaGGGCACAAGTGTCCCAGATGTAAGCAGCTGTGGAAGAGGCAGC | + |
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Preference number: 1 (lower is better) Translates to: EEAVQPTFQACMAWE*GTSVPDVSSCGRGS Trigger: GCTGCCTCTTCCACAGCTGCTTACATCTGGGACACTTGTGCCCCATTCCCAGGCCATACAAGCCTGGAAGGTGGGCTGGACAGCCTCCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR CCA 90 bp | GAAGAGGGAAGGGCAGACTCCTACAAAGAGTCTGCTCCCAAAGACTaGCTTTCCCCACCTTTGGCCGTACCCACACCACAGAGCCACCCT | + |
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Preference number: 1 (lower is better) Translates to: EEGRADSYKESAPKD*LSPPLAVPTPQSHP Trigger: AGGGTGGCTCTGTGGTGTGGGTACGGCCAAAGGTGGGGAAAGCCAGTCTTTGGGAGCAGACTCTTTGTAGGAGTCTGCCCTTCCCTCTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR CCA 90 bp | TGTCCCACATTTGGGCCCTCATCATTCCACCTGTGGCTGTCAGAGTaGAGTGGGCAGGGGAAGAGGGAAGGGCAGACTCCTACAAAGAGT | + |
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Preference number: 1 (lower is better) Translates to: CPTFGPSSFHLWLSE*SGQGKREGQTPTKS Trigger: ACTCTTTGTAGGAGTCTGCCCTTCCCTCTTCCCCTGCCCACTCCACTCTGACAGCCACAGGTGGAATGATGAGGGCCCAAATGTGGGACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR CCA 90 bp | TTTGGCCGTACCCACACCACAGAGCCACCCTTGAAAAGCATCCTGTaGAGCTTGCTGGGCCTTGCTGAGACTTTTGGTAGGCAGGCATTC | + |
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Preference number: 1 (lower is better) Translates to: FGRTHTTEPPLKSIL*SLLGLAETFGRQAF Trigger: GAATGCCTGCCTACCAAAAGTCTCAGCAAGGCCCAGCAAGCTCCACAGGATGCTTTTCAAGGGTGGCTCTGTGGTGTGGGTACGGCCAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR CCA 90 bp | CATAGCGTTGGACAAGGGCACTTCCATAGCCCTGGGGTTCTGAAGTaGGAATCTGTGCTGGTCAGGTCAGGCTTTCAGGCCTCTGGTTCT | + |
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Preference number: 1 (lower is better) Translates to: HSVGQGHFHSPGVLK*ESVLVRSGFQASGS Trigger: AGAACCAGAGGCCTGAAAGCCTGACCTGACCAGCACAGATTCCCACTTCAGAACCCCAGGGCTATGGAAGTGCCCTTGTCCAACGCTATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR CCA 90 bp | ATGGAAAAGGGTGTTCAAGGGAGAAGGTTGCCATCACAGAGCTCCTaGGACTCGGGTGTTGTCACTCTTCCAGGACTTCTGAAGACCTCC | + |
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Preference number: 1 (lower is better) Translates to: MEKGVQGRRLPSQSS*DSGVVTLPGLLKTS Trigger: GGAGGTCTTCAGAAGTCCTGGAAGAGTGACAACACCCGAGTCCCAGGAGCTCTGTGATGGCAACCTTCTCCCTTGAACACCCTTTTCCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR TCA 90 bp | TTGGGCCTCACAAGACAAGGAGAAACTCTACGACCTAGCCAGCAGTaGGCTGTGGAAAGTTCATTAAGGCAACAGGTGATCGTTTGCCCT | + |
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Preference number: 1 (lower is better) Translates to: LGLTRQGETLRPSQQ*AVESSLRQQVIVCP Trigger: AGGGCAAACGATCACCTGTTGCCTTAATGAACTTTCCACAGCTCACTGCTGGCTAGGTCGTAGAGTTTCTCCTTGTCTTGTGAGGCCCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR CCA 90 bp | ACACACCCTGTCCCAGAATCACCTCTCCAACTCGATGCTCAAAAATaGAAAAGGGTGTTCAAGGGAGAAGGTTGCCATCACAGAGCTCCT | + |
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Preference number: 1 (lower is better) Translates to: THPVPESPLQLDAQK*KRVFKGEGCHHRAP Trigger: AGGAGCTCTGTGATGGCAACCTTCTCCCTTGAACACCCTTTTCCATTTTTGAGCATCGAGTTGGAGAGGTGATTCTGGGACAGGGTGTGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR TCA 90 bp | ACTGAGCTAGAGGCAAACATCCCCTCCCCTCAGGCAGCTTACATGTaGATGTGTTTAAACAACACAAATATACACACCCTGTCCCAGAAT | + |
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Preference number: 1 (lower is better) Translates to: TELEANIPSPQAAYM*MCLNNTNIHTLSQN Trigger: ATTCTGGGACAGGGTGTGTATATTTGTGTTGTTTAAACACATTCACATGTAAGCTGCCTGAGGGGAGGGGATGTTTGCCTCTAGCTCAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR TCA 90 bp | GGCTTTCAGGCCTCTGGTTCTAAGGTGGTCTGTCTGTTTCCATCATaGTCATCAGAACAATTTTTAAACAAGTATTACAGAAAAGCCCCC | + |
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Preference number: 1 (lower is better) Translates to: GFQASGSKVVCLFPS*SSEQFLNKYYRKAP Trigger: GGGGGCTTTTCTGTAATACTTGTTTAAAAATTGTTCTGATGATCATGATGGAAACAGACAGACCACCTTAGAACCAGAGGCCTGAAAGCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR CAA 90 bp | TCCCATGTAGGTCAGGGAGGAGGCTGTCCAGCCCACCTTCCAGGCTaGTATGGCCTGGGAATGGGGCACAAGTGTCCCAGATGTAAGCAG | + |
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Preference number: 2 (lower is better) Translates to: SHVGQGGGCPAHLPG*YGLGMGHKCPRCKQ Trigger: CTGCTTACATCTGGGACACTTGTGCCCCATTCCCAGGCCATACAAGCCTGGAAGGTGGGCTGGACAGCCTCCTCCCTGACCTACATGGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR-3UTR TCA 90 bp | CATAGAGCAGGAGAGGCACTTCTCATGGCACAGGTGGCTGTAGGCACAGGTGGCAGAGGCAGCAAGAGCTaGTGGAGGCTGAGACGTAGC | + |
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Preference number: 2 (lower is better) Translates to: HRAGEALLMAQVAVGTGGRGSKS*WRLRRS Trigger: GCTACGTCTCAGCCTCCATCAGCTCTTGCTGCCTCT...GCCACCTGTGCCTACAGCCACCTGTGCCATGAGAAGTGCCTCTCCTGCTCTATG 59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR-3UTR CCA 90 bp | CATAGAGCAGGAGAGGCACTTCTCATGGCACAGGTGGCTGTAGGCACAGGTGGCGGCTTTCCCCACCTTTaGCCGTACCCACACCACAGA | + |
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Preference number: 2 (lower is better) Translates to: HRAGEALLMAQVAVGTGGGFPHL*PYPHHR Trigger: TCTGTGGTGTGGGTACGGCCAAAGGTGGGGAAAGCC...GCCACCTGTGCCTACAGCCACCTGTGCCATGAGAAGTGCCTCTCCTGCTCTATG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR-3UTR TCA 90 bp | CATAGAGCAGGAGAGGCACTTCTCATGGCACAGGTGGCTGTAGGCACAGGTGGCCCACAGAGCCACCCTTaGAAAGCATCCTGTGGAGCT | + |
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Preference number: 2 (lower is better) Translates to: HRAGEALLMAQVAVGTGGPQSHP*KASCGA Trigger: AGCTCCACAGGATGCTTTTCAAGGGTGGCTCTGTGG...GCCACCTGTGCCTACAGCCACCTGTGCCATGAGAAGTGCCTCTCCTGCTCTATG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR-3UTR CCA 90 bp | GAGGCTGTCCAGCCCACCTTCCAGGCTTGTATGGCCTGGGAATGGGGCACAAGTTCCTGTGGAGCTTGCTaGGCCTTGCTGAGACTTTTG | + |
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Preference number: 2 (lower is better) Translates to: EAVQPTFQACMAWEWGTSSCGAC*ALLRLL Trigger: CAAAAGTCTCAGCAAGGCCCAGCAAGCTCCACAGGA...ACTTGTGCCCCATTCCCAGGCCATACAAGCCTGGAAGGTGGGCTGGACAGCCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR-3UTR CCA 90 bp | CATAGAGCAGGAGAGGCACTTCTCATGGCACAGGTGGCTGTAGGCACAGGTGGCTCTGCTCCCAAAGACTaGCTTTCCCCACCTTTGGCC | + |
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Preference number: 2 (lower is better) Translates to: HRAGEALLMAQVAVGTGGSAPKD*LSPPLA Trigger: GGCCAAAGGTGGGGAAAGCCAGTCTTTGGGAGCAGA...GCCACCTGTGCCTACAGCCACCTGTGCCATGAGAAGTGCCTCTCCTGCTCTATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR-3UTR CCA 90 bp | CATAGAGCAGGAGAGGCACTTCTCATGGCACAGGTGGCTGTAGGCACAGGTGGCCAGGCTTGTATGGCCTaGGAATGGGGCACAAGTGTC | + |
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Preference number: 2 (lower is better) Translates to: HRAGEALLMAQVAVGTGGQACMA*EWGTSV Trigger: GACACTTGTGCCCCATTCCCAGGCCATACAAGCCTG...GCCACCTGTGCCTACAGCCACCTGTGCCATGAGAAGTGCCTCTCCTGCTCTATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR-3UTR GCA 90 bp | TCTTCCAGGACTTCTGAAGACCTCCCCATAGCCTCAGGGTTCAGGGCCCACTTGTTATGTGACCATGGATaGCACCCTGTGGGAGGGTGG | + |
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Preference number: 2 (lower is better) Translates to: SSRTSEDLPIASGFRAHLLCDHG*HPVGGW Trigger: CCACCCTCCCACAGGGTGGCATCCATGGTCACATAA...CAAGTGGGCCCTGAACCCTGAGGCTATGGGGAGGTCTTCAGAAGTCCTGGAAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR-3UTR CCA 90 bp | GACTATTCCCATAGCGTTGGACAAGGGCACTTCCATAGCCCTGGGGTTCTGAAGCTGTGGCTGTCAGAGTaGAGTGGGCAGGGGAAGAGG | + |
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Preference number: 2 (lower is better) Translates to: DYSHSVGQGHFHSPGVLKLWLSE*SGQGKR Trigger: CCTCTTCCCCTGCCCACTCCACTCTGACAGCCACAG...CTTCAGAACCCCAGGGCTATGGAAGTGCCCTTGTCCAACGCTATGGGAATAGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR-3UTR GCA 90 bp | GAGGCTGTCCAGCCCACCTTCCAGGCTTGTATGGCCTGGGAATGGGGCACAAGTCTCCTACAAAGAGTCTaGTCCCAAAGACTGGCTTTC | + |
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Preference number: 2 (lower is better) Translates to: EAVQPTFQACMAWEWGTSLLQRV*SQRLAF Trigger: GAAAGCCAGTCTTTGGGAGCAGACTCTTTGTAGGAG...ACTTGTGCCCCATTCCCAGGCCATACAAGCCTGGAAGGTGGGCTGGACAGCCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR-3UTR TCA 90 bp | AGCACTGGACCAAGTGGACCTCTGTTCAGAGCAATCGAGAGCCATCAGGGCTCTGGTAGGCAGGCATTCTaGATGCCAGCTTTCATGGTC | + |
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Preference number: 2 (lower is better) Translates to: STGPSGPLFRAIESHQGSGRQAF*MPAFMV Trigger: GACCATGAAAGCTGGCATTCAGAATGCCTGCCTACC...AGAGCCCTGATGGCTCTCGATTGCTCTGAACAGAGGTCCACTTGGTCCAGTGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR-3UTR CCA 90 bp | ATGGGGCACAAGTGTCCCAGATGTAAGCAGCTGTGGAAGAGGCAGCAAGAGCTGTCATCATTCCACCTGTaGCTGTCAGAGTGGAGTGGG | + |
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Preference number: 2 (lower is better) Translates to: MGHKCPRCKQLWKRQQELSSFHL*LSEWSG Trigger: CCCACTCCACTCTGACAGCCACAGGTGGAATGATGA...CAGCTCTTGCTGCCTCTTCCACAGCTGCTTACATCTGGGACACTTGTGCCCCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR-3UTR CCA 90 bp | CATAGAGCAGGAGAGGCACTTCTCATGGCACAGGTGGCTGTAGGCACAGGTGGCCCAGCTTTCATGGTCTaGTTTGTGATCCCAAGAATG | + |
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Preference number: 2 (lower is better) Translates to: HRAGEALLMAQVAVGTGGPAFMV*FVIPRM Trigger: CATTCTTGGGATCACAAACCAGACCATGAAAGCTGG...GCCACCTGTGCCTACAGCCACCTGTGCCATGAGAAGTGCCTCTCCTGCTCTATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR-3UTR CCA 90 bp | CATAGAGCAGGAGAGGCACTTCTCATGGCACAGGTGGCTGTAGGCACAGGTGGCGGGTGGATGAATGAATaGAAGACAGATCTTCCAAGG | + |
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Preference number: 2 (lower is better) Translates to: HRAGEALLMAQVAVGTGGGWMNE*KTDLPR Trigger: CCTTGGAAGATCTGTCTTCCATTCATTCATCCACCC...GCCACCTGTGCCTACAGCCACCTGTGCCATGAGAAGTGCCTCTCCTGCTCTATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR CAA 90 bp | AGGACTTCTGAAGACCTCCCCATAGCCTCAGGGTTCAGGGCCCACTaGGAAATGACTGGATTTTCCTTCGAGGACCATCTTAAGAGCCAT | + |
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Preference number: 2 (lower is better) Translates to: RTSEDLPIASGFRAH*EMTGFSFEDHLKSH Trigger: ATGGCTCTTAAGATGGTCCTCGAAGGAAAATCCAGTCATTTCCAAGTGGGCCCTGAACCCTGAGGCTATGGGGAGGTCTTCAGAAGTCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR-3UTR TCA 90 bp | GGGGAAGAGGGAAGGGCAGACTCCTACAAAGAGTCTGCTCCCAAAGACTGGCTTTCATGGTCTGGTTTGTaGTCCCAAGAATGCAGAAAC | + |
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Preference number: 2 (lower is better) Translates to: GEEGRADSYKESAPKDWLSWSGL*SQECRN Trigger: GTTTCTGCATTCTTGGGATCACAAACCAGACCATGA...AAGCCAGTCTTTGGGAGCAGACTCTTTGTAGGAGTCTGCCCTTCCCTCTTCCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR-3UTR GCA 90 bp | TTGGGAAACTCTGGGTCTCTTACAGACAAACCAGGGCCAGTCTTTGCCCACTTCGGCAGGCATTCTGAATaGCAGCTTTCATGGTCTGGT | + |
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Preference number: 2 (lower is better) Translates to: LGNSGSLTDKPGPVFAHFGRHSE*QLSWSG Trigger: ACCAGACCATGAAAGCTGGCATTCAGAATGCCTGCC...GAAGTGGGCAAAGACTGGCCCTGGTTTGTCTGTAAGAGACCCAGAGTTTCCCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR-3UTR TCA 90 bp | ACCATCTTAAGAGCCATGGCTCTGGGAATCCTTTCCTGTCTCCCTGTGGGGAGTATGACCCATTCATGTTaGATGATGGATGGGTGGATG | + |
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Preference number: 2 (lower is better) Translates to: TILRAMALGILSCLPVGSMTHSC*MMDGWM Trigger: CATCCACCCATCCATCATTCAACATGAATGGGTCAT...ACTCCCCACAGGGAGACAGGAAAGGATTCCCAGAGCCATGGCTCTTAAGATGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR-3UTR TCA 90 bp | TGTGGAAAGTTCATTAAGGCAACAGGTGATCGTTTGCCCTGTCGCTGTCCCATAGGGCCCACTTGGAAATaGCTGGATTTTCCTTCGAGG | + |
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Preference number: 2 (lower is better) Translates to: CGKFIKATGDRLPCRCPIGPTWK*LDFPSR Trigger: CCTCGAAGGAAAATCCAGTCATTTCCAAGTGGGCCC...TATGGGACAGCGACAGGGCAAACGATCACCTGTTGCCTTAATGAACTTTCCACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR-3UTR GCA 90 bp | ACACAAATATACACACCCTGTCCCAGAATCACCTCTCCAACTCGATGCTCAAAAGCATCCTGTGGAGCTTaGTGGGCCTTGCTGAGACTT | + |
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Preference number: 2 (lower is better) Translates to: TQIYTPCPRITSPTRCSKASCGA*WALLRL Trigger: AAGTCTCAGCAAGGCCCAGCAAGCTCCACAGGATGC...TTTTGAGCATCGAGTTGGAGAGGTGATTCTGGGACAGGGTGTGTATATTTGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR-3UTR TCA 90 bp | GTTCTGAAGTGGGAATCTGTGCTGGTCAGGTCAGGCTTTCAGGCCTCTGGTTCTCAGGCAGCTTACATGTaGATGTGTTTAAACAACACA | + |
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Preference number: 2 (lower is better) Translates to: VLKWESVLVRSGFQASGSQAAYM*MCLNNT Trigger: TGTGTTGTTTAAACACATTCACATGTAAGCTGCCTG...AGAACCAGAGGCCTGAAAGCCTGACCTGACCAGCACAGATTCCCACTTCAGAAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR-3UTR CCA 90 bp | TTAATATCTGAGCATAGATGTCCCACATTTGGGCCCTCATCATTCCACCTGTGGTTGAAAAGCATCCTGTaGAGCTTGCTGGGCCTTGCT | + |
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Preference number: 2 (lower is better) Translates to: LISEHRCPTFGPSSFHLWLKSIL*SLLGLA Trigger: AGCAAGGCCCAGCAAGCTCCACAGGATGCTTTTCAA...CCACAGGTGGAATGATGAGGGCCCAAATGTGGGACATCTATGCTCAGATATTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR-3UTR CCA 90 bp | ACACAAATATACACACCCTGTCCCAGAATCACCTCTCCAACTCGATGCTCAAAAAGATGTAAGCAGCTGTaGAAGAGGCAGCAAGAGCTG | + |
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Preference number: 2 (lower is better) Translates to: TQIYTPCPRITSPTRCSKRCKQL*KRQQEL Trigger: CAGCTCTTGCTGCCTCTTCCACAGCTGCTTACATCT...TTTTGAGCATCGAGTTGGAGAGGTGATTCTGGGACAGGGTGTGTATATTTGTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR-3UTR CCA 90 bp | CTCTGCTGTTCTTTGATAACTAGTGATAAGCACCAATTGAGAGCTGATCCTACCTCTGGGGAAACCTCGTaGGCACTACCCATGATAGCA | + |
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Preference number: 2 (lower is better) Translates to: LCCSLITSDKHQLRADPTSGETS*ALPMIA Trigger: TGCTATCATGGGTAGTGCCCACGAGGTTTCCCCAGA...GGTAGGATCAGCTCTCAATTGGTGCTTATCACTAGTTATCAAAGAACAGCAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR-3UTR CCA 90 bp | CTCTGCTGTTCTTTGATAACTAGTGATAAGCACCAATTGAGAGCTGATCCTACCCTCGATGCTCAAAAATaGAAAAGGGTGTTCAAGGGA | + |
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Preference number: 2 (lower is better) Translates to: LCCSLITSDKHQLRADPTLDAQK*KRVFKG Trigger: TCCCTTGAACACCCTTTTCCATTTTTGAGCATCGAG...GGTAGGATCAGCTCTCAATTGGTGCTTATCACTAGTTATCAAAGAACAGCAGAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR-3UTR CAA 90 bp | CCCAAAGACTGGCTTTCCCCACCTTTGGCCGTACCCACACCACAGAGCCACCCTGGAGCTTGCTGGGCCTaGCTGAGACTTTTGGTAGGC | + |
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Preference number: 3 (lower is better) Translates to: PKDWLSPPLAVPTPQSHPGACWA*LRLLVG Trigger: GCCTACCAAAAGTCTCAGCAAGGCCCAGCAAGCTCC...AGGGTGGCTCTGTGGTGTGGGTACGGCCAAAGGTGGGGAAAGCCAGTCTTTGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR TCA 72 bp | CCTGGGACTCGGGTGTTGTCACTCTTCCAGGACTTCTaGAGACCTCCCCATAGCCTCAGGGTTCAGGGCCCA | + |
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Preference number: 3 (lower is better) Translates to: PGTRVLSLFQDF*RPPHSLRVQGP Trigger: TGGGCCCTGAACCCTGAGGCTATGGGGAGGTCTTCAGAAGTCCTGGAAGAGTGACAACACCCGAGTCCCAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR-3UTR CAA 90 bp | CATAGAGCAGGAGAGGCACTTCTCATGGCACAGGTGGCTGTAGGCACAGGTGGCCTGTCCCATATCACCTaGGCAGCCCTGCTAAGGGAA | + |
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Preference number: 3 (lower is better) Translates to: HRAGEALLMAQVAVGTGGLSHIT*AALLRE Trigger: TTCCCTTAGCAGGGCTGCCAAGGTGATATGGGACAG...GCCACCTGTGCCTACAGCCACCTGTGCCATGAGAAGTGCCTCTCCTGCTCTATG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR CCA 72 bp | GTCCAGCCCACCTTCCAGGCTTGTATGGCCTGGGAATaGGGCACAAGTGTCCCAGATGTAAGCAGCTGTGGA | + |
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Preference number: 3 (lower is better) Translates to: VQPTFQACMAWE*GTSVPDVSSCG Trigger: TCCACAGCTGCTTACATCTGGGACACTTGTGCCCCATTCCCAGGCCATACAAGCCTGGAAGGTGGGCTGGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR-3UTR CAA 90 bp | AGCACTGGACCAAGTGGACCTCTGTTCAGAGCAATCGAGAGCCATCAGGGCTCTAGCATCCTGTGGAGCTaGCTGGGCCTTGCTGAGACT | + |
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Preference number: 3 (lower is better) Translates to: STGPSGPLFRAIESHQGSSILWS*LGLAET Trigger: AGTCTCAGCAAGGCCCAGCAAGCTCCACAGGATGCT...AGAGCCCTGATGGCTCTCGATTGCTCTGAACAGAGGTCCACTTGGTCCAGTGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR-3UTR CAA 90 bp | CTTAAGAGCCATGGCTCTGGGAATCCTTTCCTGTCTCCCTGTGGGGAGTATAGAGCCCACCTTCCAGGCTaGTATGGCCTGGGAATGGGG | + |
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Preference number: 3 (lower is better) Translates to: LKSHGSGNPFLSPCGEYRAHLPG*YGLGMG Trigger: CCCCATTCCCAGGCCATACAAGCCTGGAAGGTGGGC...TCTATACTCCCCACAGGGAGACAGGAAAGGATTCCCAGAGCCATGGCTCTTAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR GCA 72 bp | AGGGGAAGAGGGAAGGGCAGACTCCTACAAAGAGTCTaGTCCCAAAGACTGGCTTTCCCCACCTTTGGCCGT | + |
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Preference number: 3 (lower is better) Translates to: RGRGKGRLLQRV*SQRLAFPTFGR Trigger: ACGGCCAAAGGTGGGGAAAGCCAGTCTTTGGGAGCAGACTCTTTGTAGGAGTCTGCCCTTCCCTCTTCCCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR CCA 72 bp | AGGGCAGACTCCTACAAAGAGTCTGCTCCCAAAGACTaGCTTTCCCCACCTTTGGCCGTACCCACACCACAG | + |
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Preference number: 3 (lower is better) Translates to: RADSYKESAPKD*LSPPLAVPTPQ Trigger: CTGTGGTGTGGGTACGGCCAAAGGTGGGGAAAGCCAGTCTTTGGGAGCAGACTCTTTGTAGGAGTCTGCCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR CCA 72 bp | AGATGTCCCACATTTGGGCCCTCATCATTCCACCTGTaGCTGTCAGAGTGGAGTGGGCAGGGGAAGAGGGAA | + |
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Preference number: 3 (lower is better) Translates to: RCPTFGPSSFHL*LSEWSGQGKRE Trigger: TTCCCTCTTCCCCTGCCCACTCCACTCTGACAGCCACAGGTGGAATGATGAGGGCCCAAATGTGGGACATCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR CCA 72 bp | GGAATGGGGCACAAGTGTCCCAGATGTAAGCAGCTGTaGAAGAGGCAGCAAGAGCTGATGGAGGCTGAGACG | + |
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Preference number: 3 (lower is better) Translates to: GMGHKCPRCKQL*KRQQELMEAET Trigger: CGTCTCAGCCTCCATCAGCTCTTGCTGCCTCTTCCACAGCTGCTTACATCTGGGACACTTGTGCCCCATTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR-3UTR CAA 90 bp | AGCACTGGACCAAGTGGACCTCTGTTCAGAGCAATCGAGAGCCATCAGGGCTCTACCACAGAGCCACCCTaGAAAAGCATCCTGTGGAGC | + |
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Preference number: 3 (lower is better) Translates to: STGPSGPLFRAIESHQGSTTEPP*KSILWS Trigger: GCTCCACAGGATGCTTTTCAAGGGTGGCTCTGTGGT...AGAGCCCTGATGGCTCTCGATTGCTCTGAACAGAGGTCCACTTGGTCCAGTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR TCA 72 bp | GAAGAGAGGGAGGAAGGGAGGGGAGTCCGTTTGTACTaGGGTGGTGTCAATGATGGCCCTAAAGCCACTCAG | + |
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Preference number: 3 (lower is better) Translates to: EEREEGRGVRLY*GGVNDGPKATQ Trigger: CTGAGTGGCTTTAGGGCCATCATTGACACCACCTCAGTACAAACGGACTCCCCTCCCTTCCTCCCTCTCTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR CCA 72 bp | ACCCACACCACAGAGCCACCCTTGAAAAGCATCCTGTaGAGCTTGCTGGGCCTTGCTGAGACTTTTGGTAGG | + |
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Preference number: 3 (lower is better) Translates to: THTTEPPLKSIL*SLLGLAETFGR Trigger: CCTACCAAAAGTCTCAGCAAGGCCCAGCAAGCTCCACAGGATGCTTTTCAAGGGTGGCTCTGTGGTGTGGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR CCA 72 bp | AAGAGTCTGCTCCCAAAGACTGGCTTTCCCCACCTTTaGCCGTACCCACACCACAGAGCCACCCTTGAAAAG | + |
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Preference number: 3 (lower is better) Translates to: KSLLPKTGFPHL*PYPHHRATLEK Trigger: CTTTTCAAGGGTGGCTCTGTGGTGTGGGTACGGCCAAAGGTGGGGAAAGCCAGTCTTTGGGAGCAGACTCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR CCA 72 bp | GGTGTTCAAGGGAGAAGGTTGCCATCACAGAGCTCCTaGGACTCGGGTGTTGTCACTCTTCCAGGACTTCTG | + |
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Preference number: 3 (lower is better) Translates to: GVQGRRLPSQSS*DSGVVTLPGLL Trigger: CAGAAGTCCTGGAAGAGTGACAACACCCGAGTCCCAGGAGCTCTGTGATGGCAACCTTCTCCCTTGAACACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR CCA 72 bp | AGCCCCCAAGGGGAAGGTATGGAGGACACTTTAGATTaGCCTCCTTCCTTGGGCCTCACAAGACAAGGAGAA | + |
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Preference number: 3 (lower is better) Translates to: SPQGEGMEDTLD*PPSLGLTRQGE Trigger: TTCTCCTTGTCTTGTGAGGCCCAAGGAAGGAGGCCAATCTAAAGTGTCCTCCATACCTTCCCCTTGGGGGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR-3UTR CAA 90 bp | TGTGGAAAGTTCATTAAGGCAACAGGTGATCGTTTGCCCTGTCGCTGTCCCATATGGCTTTCCCCACCTTaGGCCGTACCCACACCACAG | + |
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Preference number: 3 (lower is better) Translates to: CGKFIKATGDRLPCRCPIWLSPP*AVPTPQ Trigger: CTGTGGTGTGGGTACGGCCAAAGGTGGGGAAAGCCA...TATGGGACAGCGACAGGGCAAACGATCACCTGTTGCCTTAATGAACTTTCCACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR TCA 72 bp | CTGGGCCTTGCTGAGACTTTTGGTAGGCAGGCATTCTaGATGCCAGCTTTCATGGTCTGGTTTGTGATCCCA | + |
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Preference number: 3 (lower is better) Translates to: LGLAETFGRQAF*MPAFMVWFVIP Trigger: TGGGATCACAAACCAGACCATGAAAGCTGGCATTCAGAATGCCTGCCTACCAAAAGTCTCAGCAAGGCCCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR GCA 72 bp | GCTCAAAAATGGAAAAGGGTGTTCAAGGGAGAAGGTTaGCATCACAGAGCTCCTGGGACTCGGGTGTTGTCA | + |
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Preference number: 3 (lower is better) Translates to: AQKWKRVFKGEG*HHRAPGTRVLS Trigger: TGACAACACCCGAGTCCCAGGAGCTCTGTGATGGCAACCTTCTCCCTTGAACACCCTTTTCCATTTTTGAGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR CCA 72 bp | GAATGCTCTACAGTAGTATTCTCTGGGGAAACCTCGTaGGCACTACCCATGATAGCACTGGACCAAGTGGAC | + |
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Preference number: 3 (lower is better) Translates to: ECSTVVFSGETS*ALPMIALDQVD Trigger: GTCCACTTGGTCCAGTGCTATCATGGGTAGTGCCCACGAGGTTTCCCCAGAGAATACTACTGTAGAGCATTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR-3UTR CAA 90 bp | ATGGGGCACAAGTGTCCCAGATGTAAGCAGCTGTGGAAGAGGCAGCAAGAGCTGGTGCATTTAACCATATaGCAGGGAGCTCATCAGAAA | + |
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Preference number: 3 (lower is better) Translates to: MGHKCPRCKQLWKRQQELVHLTI*QGAHQK Trigger: TTTCTGATGAGCTCCCTGCAATATGGTTAAATGCAC...CAGCTCTTGCTGCCTCTTCCACAGCTGCTTACATCTGGGACACTTGTGCCCCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR GCA 72 bp | GGAATCCTTTCCTGTCTCCCTGTGGGGAGTATAGAATaGTCTACAGTAGTATTCTCTGGGGAAACCTCGTGG | + |
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Preference number: 3 (lower is better) Translates to: GILSCLPVGSIE*STVVFSGETSW Trigger: CCACGAGGTTTCCCCAGAGAATACTACTGTAGAGCATTCTATACTCCCCACAGGGAGACAGGAAAGGATTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR-3UTR CAA 90 bp | CTCTTCTTAGCATCCCAAATGCAGGGCATAGAGCAGGAGAGGCACTTCTCATGGCATGACCCATTCATGTaGAATGATGGATGGGTGGAT | + |
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Preference number: 3 (lower is better) Translates to: LFLASQMQGIEQERHFSWHDPFM*NDGWVD Trigger: ATCCACCCATCCATCATTCAACATGAATGGGTCATG...CCATGAGAAGTGCCTCTCCTGCTCTATGCCCTGCATTTGGGATGCTAAGAAGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR GCA 72 bp | TACACACCCTGTCCCAGAATCACCTCTCCAACTCGATaGTCAAAAATGGAAAAGGGTGTTCAAGGGAGAAGG | + |
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Preference number: 3 (lower is better) Translates to: YTPCPRITSPTR*SKMEKGVQGRR Trigger: CCTTCTCCCTTGAACACCCTTTTCCATTTTTGAGCATCGAGTTGGAGAGGTGATTCTGGGACAGGGTGTGTA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR CCA 72 bp | TGTGGGGAGTATAGAATGCTCTACAGTAGTATTCTCTaGGGAAACCTCGTGGGCACTACCCATGATAGCACT | + |
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Preference number: 3 (lower is better) Translates to: CGEYRMLYSSIL*GNLVGTTHDST Trigger: AGTGCTATCATGGGTAGTGCCCACGAGGTTTCCCCAGAGAATACTACTGTAGAGCATTCTATACTCCCCACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR CCA 72 bp | GTCCCAGAATCACCTCTCCAACTCGATGCTCAAAAATaGAAAAGGGTGTTCAAGGGAGAAGGTTGCCATCAC | + |
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Preference number: 3 (lower is better) Translates to: VPESPLQLDAQK*KRVFKGEGCHH Trigger: GTGATGGCAACCTTCTCCCTTGAACACCCTTTTCCATTTTTGAGCATCGAGTTGGAGAGGTGATTCTGGGAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR TCA 72 bp | ACAAGACAAGGAGAAACTCTACGACCTAGCCAGCAGTaGGCTGTGGAAAGTTCATTAAGGCAACAGGTGATC | + |
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Preference number: 3 (lower is better) Translates to: TRQGETLRPSQQ*AVESSLRQQVI Trigger: GATCACCTGTTGCCTTAATGAACTTTCCACAGCTCACTGCTGGCTAGGTCGTAGAGTTTCTCCTTGTCTTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR-3UTR CAA 90 bp | CTCTGCTGTTCTTTGATAACTAGTGATAAGCACCAATTGAGAGCTGATCCTACCATAGATGTCCCACATTaGGGCCCTCATCATTCCACC | + |
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Preference number: 3 (lower is better) Translates to: LCCSLITSDKHQLRADPTIDVPH*GPHHST Trigger: GGTGGAATGATGAGGGCCCAAATGTGGGACATCTAT...GGTAGGATCAGCTCTCAATTGGTGCTTATCACTAGTTATCAAAGAACAGCAGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| CDS-3UTR TCA 90 bp | GAGGCTGTCCAGCCCACCTTCCAGGCTTGTATGGCCTGGGAATGGGGCACAAGTACCTCTCTCCCTGCTTaGGGCGGAAGAGCTGGAGCA | + |
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Preference number: 4 (lower is better) Translates to: EAVQPTFQACMAWEWGTSTSLPA*GGRAGA Trigger: TGCTCCAGCTCTTCCGCCTCAAGCAGGGAGAGAGGT...ACTTGTGCCCCATTCCCAGGCCATACAAGCCTGGAAGGTGGGCTGGACAGCCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| CDS-3UTR GCA 90 bp | CCAAAGACTGGCTTTCCCCACCTTTGGCCGTACCCACACCACAGAGCCACCCTTACGAACCTCTCTCCCTaGTTGAGGCGGAAGAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: PKTGFPHLWPYPHHRATLTNLSP*LRRKSW Trigger: CCAGCTCTTCCGCCTCAAGCAGGGAGAGAGGTTCGT...AAGGGTGGCTCTGTGGTGTGGGTACGGCCAAAGGTGGGGAAAGCCAGTCTTTGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| CDS-3UTR TCA 90 bp | GGGGAAGAGGGAAGGGCAGACTCCTACAAAGAGTCTGCTCCCAAAGACTGGCTTCCACCCAGGCCAGGATaGAAGAGTAGCCGTAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: GEEGRADSYKESAPKDWLPPRPG*KSSRSC Trigger: GCAGCTACGGCTACTCTTTCATCCTGGCCTGGGTGG...AAGCCAGTCTTTGGGAGCAGACTCTTTGTAGGAGTCTGCCCTTCCCTCTTCCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR CAA 72 bp | ACCACAGAGCCACCCTTGAAAAGCATCCTGTGGAGCTaGCTGGGCCTTGCTGAGACTTTTGGTAGGCAGGCA | + |
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Preference number: 4 (lower is better) Translates to: TTEPPLKSILWS*LGLAETFGRQA Trigger: TGCCTGCCTACCAAAAGTCTCAGCAAGGCCCAGCAAGCTCCACAGGATGCTTTTCAAGGGTGGCTCTGTGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| CDS-3UTR CCA 90 bp | CTCTTCTTAGCATCCCAAATGCAGGGCATAGAGCAGGAGAGGCACTTCTCATGGTGGAGAGGATCATGGTaGCCTGCACCGCCTGCATCA | + |
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Preference number: 4 (lower is better) Translates to: LFLASQMQGIEQERHFSWWRGSW*PAPPAS Trigger: TGATGCAGGCGGTGCAGGCCACCATGATCCTCTCCA...CCATGAGAAGTGCCTCTCCTGCTCTATGCCCTGCATTTGGGATGCTAAGAAGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR CAA 72 bp | GCATCCTGTGGAGCTTGCTGGGCCTTGCTGAGACTTTaGGTAGGCAGGCATTCTGAATGCCAGCTTTCATGG | + |
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Preference number: 4 (lower is better) Translates to: ASCGACWALLRL*VGRHSECQLSW Trigger: CCATGAAAGCTGGCATTCAGAATGCCTGCCTACCAAAAGTCTCAGCAAGGCCCAGCAAGCTCCACAGGATGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR CAA 72 bp | AAGCCCCCAAGGGGAAGGTATGGAGGACACTTTAGATaGGCCTCCTTCCTTGGGCCTCACAAGACAAGGAGA | + |
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Preference number: 4 (lower is better) Translates to: KPPRGRYGGHFR*ASFLGPHKTRR Trigger: TCTCCTTGTCTTGTGAGGCCCAAGGAAGGAGGCCAATCTAAAGTGTCCTCCATACCTTCCCCTTGGGGGCTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| CDS-3UTR CCA 90 bp | ATGGGGCACAAGTGTCCCAGATGTAAGCAGCTGTGGAAGAGGCAGCAAGAGCTGTTGAGGCGGAAGAGCTaGAGCAGAAAGATGAGGAAG | + |
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Preference number: 4 (lower is better) Translates to: MGHKCPRCKQLWKRQQELLRRKS*SRKMRK Trigger: CTTCCTCATCTTTCTGCTCCAGCTCTTCCGCCTCAA...CAGCTCTTGCTGCCTCTTCCACAGCTGCTTACATCTGGGACACTTGTGCCCCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR CAA 72 bp | GAAGACCTCCCCATAGCCTCAGGGTTCAGGGCCCACTaGGAAATGACTGGATTTTCCTTCGAGGACCATCTT | + |
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Preference number: 4 (lower is better) Translates to: EDLPIASGFRAH*EMTGFSFEDHL Trigger: AAGATGGTCCTCGAAGGAAAATCCAGTCATTTCCAAGTGGGCCCTGAACCCTGAGGCTATGGGGAGGTCTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| CDS-3UTR CCA 90 bp | ACACAAATATACACACCCTGTCCCAGAATCACCTCTCCAACTCGATGCTCAAAATGGTGGAGAGGATCATaGTGGCCTGCACCGCCTGCA | + |
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Preference number: 4 (lower is better) Translates to: TQIYTPCPRITSPTRCSKWWRGS*WPAPPA Trigger: TGCAGGCGGTGCAGGCCACCATGATCCTCTCCACCA...TTTTGAGCATCGAGTTGGAGAGGTGATTCTGGGACAGGGTGTGTATATTTGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR CAA 72 bp | TGCTCAAAAATGGAAAAGGGTGTTCAAGGGAGAAGGTaGCCATCACAGAGCTCCTGGGACTCGGGTGTTGTC | + |
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Preference number: 4 (lower is better) Translates to: CSKMEKGVQGRR*PSQSSWDSGVV Trigger: GACAACACCCGAGTCCCAGGAGCTCTGTGATGGCAACCTTCTCCCTTGAACACCCTTTTCCATTTTTGAGCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| 3UTR CAA 72 bp | GAAGGTATGGAGGACACTTTAGATTGGCCTCCTTCCTaGGGCCTCACAAGACAAGGAGAAACTCTACGACCT | + |
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Preference number: 4 (lower is better) Translates to: EGMEDTLDWPPS*GLTRQGETLRP Trigger: AGGTCGTAGAGTTTCTCCTTGTCTTGTGAGGCCCAAGGAAGGAGGCCAATCTAAAGTGTCCTCCATACCTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| CDS-3UTR GCA 90 bp | GTTCAGAGCAATCGAGAGCCATCAGGGCTCTTAGAAGAACACAGAGAAAGTAGGAAGAGTAGCCGTAGCTaGCTTCTTGCAGTAGGTAAT | + |
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Preference number: 4 (lower is better) Translates to: VQSNREPSGLLEEHRESRKSSRS*LLAVGN Trigger: ATTACCTACTGCAAGAAGGCAGCTACGGCTACTCTT...CCTACTTTCTCTGTGTTCTTCTAAGAGCCCTGATGGCTCTCGATTGCTCTGAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| CDS-3UTR CAA 90 bp | CCAAAGACTGGCTTTCCCCACCTTTGGCCGTACCCACACCACAGAGCCACCCTTAACCTCTCTCCCTGCTaGAGGCGGAAGAGCTGGAGC | + |
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Preference number: 5 (lower is better) Translates to: PKTGFPHLWPYPHHRATLNLSPC*RRKSWS Trigger: GCTCCAGCTCTTCCGCCTCAAGCAGGGAGAGAGGTT...AAGGGTGGCTCTGTGGTGTGGGTACGGCCAAAGGTGGGGAAAGCCAGTCTTTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| CDS-3UTR CAA 90 bp | GACTATTCCCATAGCGTTGGACAAGGGCACTTCCATAGCCCTGGGGTTCTGAAGGGGCCGGTCAGCTCATaGATCTCGGTACAGTTTGTG | + |
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Preference number: 5 (lower is better) Translates to: DYSHSVGQGHFHSPGVLKGPVSS*ISVQFV Trigger: CACAAACTGTACCGAGATCAATGAGCTGACCGGCCC...CTTCAGAACCCCAGGGCTATGGAAGTGCCCTTGTCCAACGCTATGGGAATAGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| CDS-3UTR CAA 90 bp | AGCACTGGACCAAGTGGACCTCTGTTCAGAGCAATCGAGAGCCATCAGGGCTCTCCTACCCACCAGGCATaGTCAATGGTAGAAATGAAC | + |
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Preference number: 5 (lower is better) Translates to: STGPSGPLFRAIESHQGSPTHQA*SMVEMN Trigger: GTTCATTTCTACCATTGACAATGCCTGGTGGGTAGG...AGAGCCCTGATGGCTCTCGATTGCTCTGAACAGAGGTCCACTTGGTCCAGTGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| CDS GCA 90 bp | GTCGCCTACCCACCAGGCATTGTCAATGGTAGAAATGAACAGGAGTaGCGTGGACACGATGTGGAAGACAATGATGAAGGCAAGAATCAC | + |
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Preference number: 5 (lower is better) Translates to: VAYPPGIVNGRNEQE*RGHDVEDNDEGKNH Trigger: GTGATTCTTGCCTTCATCATTGTCTTCCACATCGTGTCCACGGCACTCCTGTTCATTTCTACCATTGACAATGCCTGGTGGGTAGGCGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| CDS CCA 72 bp | GAAGCTCCGATCATGACACACAGACAGGACATGAGCTaGATGATGGACGTCAGGACGAACCTCTCTCCCTGC | + |
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Preference number: 6 (lower is better) Translates to: EAPIMTHRQDMS*MMDVRTNLSPC Trigger: GCAGGGAGAGAGGTTCGTCCTGACGTCCATCATCCAGCTCATGTCCTGTCTGTGTGTCATGATCGGAGCTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| CDS CAA 90 bp | ACTCTCCAGAGGTCAGCAGAGAAGCTGTCGCCTACCCACCAGGCATaGTCAATGGTAGAAATGAACAGGAGTGCCGTGGACACGATGTGG | + |
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Preference number: 6 (lower is better) Translates to: TLQRSAEKLSPTHQA*SMVEMNRSAVDTMW Trigger: CCACATCGTGTCCACGGCACTCCTGTTCATTTCTACCATTGACAATGCCTGGTGGGTAGGCGACAGCTTCTCTGCTGACCTCTGGAGAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| CDS CAA 72 bp | AGGTCAGCAGAGAAGCTGTCGCCTACCCACCAGGCATaGTCAATGGTAGAAATGAACAGGAGTGCCGTGGAC | + |
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Preference number: 6 (lower is better) Translates to: RSAEKLSPTHQA*SMVEMNRSAVD Trigger: GTCCACGGCACTCCTGTTCATTTCTACCATTGACAATGCCTGGTGGGTAGGCGACAGCTTCTCTGCTGACCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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| CDS GCA 72 bp | CCACCAGGCATTGTCAATGGTAGAAATGAACAGGAGTaGCGTGGACACGATGTGGAAGACAATGATGAAGGC | + |
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Preference number: 6 (lower is better) Translates to: PPGIVNGRNEQE*RGHDVEDNDEG Trigger: GCCTTCATCATTGTCTTCCACATCGTGTCCACGGCACTCCTGTTCATTTCTACCATTGACAATGCCTGGTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078357.5 |
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