RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for EML4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032624

Ensembl transcript IDs: ENSMUST00000049503.10, ENSMUST00000096766.12, ENSMUST00000112363.10, ENSMUST00000234460.2, ENSMUST00000234584.2

Found 447 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAAACCTCCATTCACAGTGACCTCACCACTGCCCGGCCCGTTACCTaGCCCCATCACGTCACGGGGTCACGGGTGGCAGAGGAGCCCTGC +
Preference number: 1 (lower is better)
Translates to: QTSIHSDLTTARPVT*PHHVTGSRVAEEPC
Trigger: GCAGGGCTCCTCTGCCACCCGTGACCCCGTGACGTGATGGGGCCAGGTAACGGGCCGGGCAGTGGTGAGGTCACTGTGAATGGAGGTTTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR TCA 90 bp TGCGGACAGTGTCCGATCTCATGGGAAACAAACCTCCATTCACAGTaGCCTCACCACTGCCCGGCCCGTTACCTGGCCCCATCACGTCAC +
Preference number: 1 (lower is better)
Translates to: CGQCPISWETNLHSQ*PHHCPARYLAPSRH
Trigger: GTGACGTGATGGGGCCAGGTAACGGGCCGGGCAGTGGTGAGGTCACTGTGAATGGAGGTTTGTTTCCCATGAGATCGGACACTGTCCGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR GCA 90 bp CCAAAGCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATaGCCACAGATAGCACATCCGCAAGGGGTGCGTGCAGCCTATAAG +
Preference number: 1 (lower is better)
Translates to: PKPPYKGCKAHRRRK*PQIAHPQGVRAAYK
Trigger: CTTATAGGCTGCACGCACCCCTTGCGGATGTGCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGCTTTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR GCA 90 bp ACAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATaGACTGCCCAGACCAAAGCCGCCATACAAGGGCTGCAAGGCTCA +
Preference number: 1 (lower is better)
Translates to: TKLRKPDLPTYTTNT*TAQTKAAIQGLQGS
Trigger: TGAGCCTTGCAGCCCTTGTATGGCGGCTTTGGTCTGGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR CCA 90 bp CCACTCGAGCGATGGTGCCTGAGAGGCCTCCAGCTGTTGAGAAAATaGAGGAAATCGCATTCAGGTAACAGGTTTCTTCCAATGGCTGCA +
Preference number: 1 (lower is better)
Translates to: PLERWCLRGLQLLRK*RKSHSGNRFLPMAA
Trigger: TGCAGCCATTGGAAGAAACCTGTTACCTGAATGCGATTTCCTCCATTTTCTCAACAGCTGGAGGCCTCTCAGGCACCATCGCTCGAGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR TCA 90 bp AAGCAGTTTCATAATCCCACATCCTTCCAACCATTATCACAGATCTaGCTGACAGGAAACAGTAGTGGCCAGCACCAGAGGCCGGAGCGC +
Preference number: 1 (lower is better)
Translates to: KQFHNPTSFQPLSQI*LTGNSSGQHQRPER
Trigger: GCGCTCCGGCCTCTGGTGCTGGCCACTACTGTTTCCTGTCAGTCAGATCTGTGATAATGGTTGGAAGGATGTGGGATTATGAAACTGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR GCA 90 bp GCCTCCTACCAAGCACGTCTGGACATCTCGGGTAGTGTAAGAAAATaGAATATCCCATGGAAAGGCAACACCATCGCACTTGGCAATGCT +
Preference number: 1 (lower is better)
Translates to: ASYQARLDISGSVRK*NIPWKGNTIALGNA
Trigger: AGCATTGCCAAGTGCGATGGTGTTGCCTTTCCATGGGATATTGCATTTTCTTACACTACCCGAGATGTCCAGACGTGCTTGGTAGGAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR GCA 90 bp CAGGTTTCTTCCAATGGCTGCAGCTGCAGTTTGGTTTCCAGTATCTaGAGCACAAATGTGGATTTCTTGGACACACTCACCTGCCAGTCT +
Preference number: 1 (lower is better)
Translates to: QVSSNGCSCSLVSSI*STNVDFLDTLTCQS
Trigger: AGACTGGCAGGTGAGTGTGTCCAAGAAATCCACATTTGTGCTGCAGATACTGGAAACCAAACTGCAGCTGCAGCCATTGGAAGAAACCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR TCA 90 bp CTGCGTGTGGAGAGCTGCATCCTCCAGGCACTGAGAGAAGCACGTTaGATTGTTGTTCATCTCCTAGTATCCATTTTGCAAGGTCTTGAT +
Preference number: 1 (lower is better)
Translates to: LRVESCILQALREAR*IVVHLLVSILQGLD
Trigger: ATCAAGACCTTGCAAAATGGATACTAGGAGATGAACAACAATTCAACGTGCTTCTCTCAGTGCCTGGAGGATGCAGCTCTCCACACGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR CCA 90 bp GCACGTCTGGACATCTCGGGTAGTGTAAGAAAATGCAATATCCCATaGAAAGGCAACACCATCGCACTTGGCAATGCTAACATTCCCCTT +
Preference number: 1 (lower is better)
Translates to: ARLDISGSVRKCNIP*KGNTIALGNANIPL
Trigger: AAGGGGAATGTTAGCATTGCCAAGTGCGATGGTGTTGCCTTTCCATGGGATATTGCATTTTCTTACACTACCCGAGATGTCCAGACGTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR CCA 90 bp GCTGCAGTTTGGTTTCCAGTATCTGCAGCACAAATGTGGATTTCTTaGACACACTCACCTGCCAGTCTCCTCCTGCTATTTAAGTTTGGT +
Preference number: 1 (lower is better)
Translates to: AAVWFPVSAAQMWIS*THSPASLLLLFKFG
Trigger: ACCAAACTTAAATAGCAGGAGGAGACTGGCAGGTGAGTGTGTCCAAGAAATCCACATTTGTGCTGCAGATACTGGAAACCAAACTGCAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp CACAGGAGGAGGAAATGCCCACAGATAGCACATCCGCAAGGGGTGCGTGCAGCCTCACGGGGTCACGGGTaGCAGAGGAGCCCTGCAGCC +
Preference number: 2 (lower is better)
Translates to: HRRRKCPQIAHPQGVRAASRGHG*QRSPAA
Trigger: GGCTGCAGGGCTCCTCTGCCACCCGTGACCCCGTGA...GGCTGCACGCACCCCTTGCGGATGTGCTATCTGTGGGCATTTCCTCCTCCTGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp GCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATAGCGCCCGGCCCGTTACCTaGCCCCATCACGTCACGGGG +
Preference number: 2 (lower is better)
Translates to: AAIQGLQGSQEEEMPTDSARPVT*PHHVTG
Trigger: CCCCGTGACGTGATGGGGCCAGGTAACGGGCCGGGC...GCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR TCA 90 bp GCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATAGCAACCTCCATTCACAGTaGCCTCACCACTGCCCGGCC +
Preference number: 2 (lower is better)
Translates to: AAIQGLQGSQEEEMPTDSNLHSQ*PHHCPA
Trigger: GGCCGGGCAGTGGTGAGGTCACTGTGAATGGAGGTT...GCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp TTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCAGACCATCACGGGGTCACGGGTaGCAGAGGAGCCCTGCAGCC +
Preference number: 2 (lower is better)
Translates to: LESPTCPRTLLTHALPRPSRGHG*QRSPAA
Trigger: GGCTGCAGGGCTCCTCTGCCACCCGTGACCCCGTGA...TGGTCTGGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR GCA 90 bp GACAGATGTCCCCAAATAAAGTCCCTGCGTGTGGAGAGCTGCATCCTCCAGGCACCACTCGAGCGATGGTaGCTGAGAGGCCTCCAGCTG +
Preference number: 2 (lower is better)
Translates to: DRCPQIKSLRVESCILQAPLERW*LRGLQL
Trigger: CAGCTGGAGGCCTCTCAGGCACCATCGCTCGAGTGG...TGCCTGGAGGATGCAGCTCTCCACACGCAGGGACTTTATTTGGGGACATCTGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp CGGAGCGCTCTCTGCACATTAGTAGTGTCTTTGGAACTACCACCCAAGAGGATCTCACGGGGTCACGGGTaGCAGAGGAGCCCTGCAGCC +
Preference number: 2 (lower is better)
Translates to: RSALCTLVVSLELPPKRISRGHG*QRSPAA
Trigger: GGCTGCAGGGCTCCTCTGCCACCCGTGACCCCGTGA...GATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAATGTGCAGAGAGCGCTCCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR GCA 90 bp ACGGTTCCCAGCGCTGATGACATACCTGATGTGTTACTCCTGAGAAGGTCCTGGCCACTCGAGCGATGGTaGCTGAGAGGCCTCCAGCTG +
Preference number: 2 (lower is better)
Translates to: TVPSADDIPDVLLLRRSWPLERW*LRGLQL
Trigger: CAGCTGGAGGCCTCTCAGGCACCATCGCTCGAGTGG...CCAGGACCTTCTCAGGAGTAACACATCAGGTATGTCATCAGCGCTGGGAACCGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR GCA 90 bp CCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATAGCACATCCACTCGAGCGATGGTaGCTGAGAGGCCTCCAGCTG +
Preference number: 2 (lower is better)
Translates to: PYKGCKAHRRRKCPQIAHPLERW*LRGLQL
Trigger: CAGCTGGAGGCCTCTCAGGCACCATCGCTCGAGTGG...ATGTGCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR GCA 90 bp CAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCCCACTCGAGCGATGGTaGCTGAGAGGCCTCCAGCTG +
Preference number: 2 (lower is better)
Translates to: QSLESPTCPRTLLTHALPPLERW*LRGLQL
Trigger: CAGCTGGAGGCCTCTCAGGCACCATCGCTCGAGTGG...GGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp TGCACTGCCCAGACCAAAGCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGATTGCTCTAGCTCACTaGTGGCATATCGGACTGCGG +
Preference number: 2 (lower is better)
Translates to: CTAQTKAAIQGLQGSQEEIALAH*WHIGLR
Trigger: CCGCAGTCCGATATGCCACCAGTGAGCTAGAGCAAT...CTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGCTTTGGTCTGGGCAGTGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR TCA 90 bp AAGGCAACACCATCGCACTTGGCAATGCTAACATTCCCCTTAAGCAAGCTCCCGAACCTCCATTCACAGTaGCCTCACCACTGCCCGGCC +
Preference number: 2 (lower is better)
Translates to: KATPSHLAMLTFPLSKLPNLHSQ*PHHCPA
Trigger: GGCCGGGCAGTGGTGAGGTCACTGTGAATGGAGGTT...CGGGAGCTTGCTTAAGGGGAATGTTAGCATTGCCAAGTGCGATGGTGTTGCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR GCA 90 bp GACAGATGTCCCCAAATAAAGTCCCTGCGTGTGGAGAGCTGCATCCTCCAGGCAAGATGCCTGAAGCTGTaGGCTCTGACCCTGGGTGAA +
Preference number: 2 (lower is better)
Translates to: DRCPQIKSLRVESCILQARCLKL*ALTLGE
Trigger: TTCACCCAGGGTCAGAGCGCACAGCTTCAGGCATCT...TGCCTGGAGGATGCAGCTCTCCACACGCAGGGACTTTATTTGGGGACATCTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp AGACCAAAGCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCAATTGCTCTAGCTCACTaGTGGCATATCGGACTGCGG +
Preference number: 2 (lower is better)
Translates to: RPKPPYKGCKAHRRRKCPIALAH*WHIGLR
Trigger: CCGCAGTCCGATATGCCACCAGTGAGCTAGAGCAAT...TGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGCTTTGGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp CCACTGCTAGCTGGTGGACAGAGATGCCTGAAGCTGTGCGCTCTGACCCTGGGTTACCAAACAGTCTCCTaGATTGCTCTAGCTCACTGG +
Preference number: 2 (lower is better)
Translates to: PLLAGGQRCLKLCALTLGYQTVS*IALAHW
Trigger: CCAGTGAGCTAGAGCAATCCAGGAGACTGTTTGGTA...ACCCAGGGTCAGAGCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp GCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATAGCGCTGCAGCTGCAGTTTaGTTTCCAGTATCTGCAGCA +
Preference number: 2 (lower is better)
Translates to: AAIQGLQGSQEEEMPTDSAAAAV*FPVSAA
Trigger: TGCTGCAGATACTGGAAACCAAACTGCAGCTGCAGC...GCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp CACAGGAGGAGGAAATGCCCACAGATAGCACATCCGCAAGGGGTGCGTGCAGCCACAGGTTTCTTCCAATaGCTGCAGCTGCAGTTTGGT +
Preference number: 2 (lower is better)
Translates to: HRRRKCPQIAHPQGVRAATGFFQ*LQLQFG
Trigger: ACCAAACTGCAGCTGCAGCCATTGGAAGAAACCTGT...GGCTGCACGCACCCCTTGCGGATGTGCTATCTGTGGGCATTTCCTCCTCCTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR TCA 90 bp GCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATAGCGAATGTTTAGGCCAGTaGAGGACTCCTTGGAGAATC +
Preference number: 2 (lower is better)
Translates to: AAIQGLQGSQEEEMPTDSECLGQ*RTPWRI
Trigger: GATTCTCCAAGGAGTCCTTCACTGGCCTAAACATTC...GCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp AATAGTTATCTGACAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACTCACGGGGTCACGGGTaGCAGAGGAGCCCTGCAGCC +
Preference number: 2 (lower is better)
Translates to: NSYLTKLRKPDLPTYTTNSRGHG*QRSPAA
Trigger: GGCTGCAGGGCTCCTCTGCCACCCGTGACCCCGTGA...GTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTGTCAGATAACTATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp TGCACTGCCCAGACCAAAGCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGCAAATGTGGATTTCTTaGACACACTCACCTGCCAGT +
Preference number: 2 (lower is better)
Translates to: CTAQTKAAIQGLQGSQEEQMWIS*THSPAS
Trigger: ACTGGCAGGTGAGTGTGTCCAAGAAATCCACATTTG...CTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGCTTTGGTCTGGGCAGTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR CAA 90 bp AACGCACTTCGATGTGTGCATCTTACTCAGATACACTGCTCTCTGTaGTCCCTCCACACACCCTCGGCACAGCGTGTGAATAGTGGCGAG +
Preference number: 2 (lower is better)
Translates to: NALRCVHLTQIHCSL*SLHTPSAQRVNSGE
Trigger: CTCGCCACTATTCACACGCTGTGCCGAGGGTGTGTGGAGGGACAACAGAGAGCAGTGTATCTGAGTAAGATGCACACATCGAAGTGCGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR TCA 90 bp CAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCGAGGCCTCCAGCTGTTaGGAAAATGGAGGAAATCGC +
Preference number: 2 (lower is better)
Translates to: QSLESPTCPRTLLTHALPEASSC*ENGGNR
Trigger: GCGATTTCCTCCATTTTCTCAACAGCTGGAGGCCTC...GGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR TCA 90 bp AGACCAAAGCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCAGAATGTTTAGGCCAGTaGAGGACTCCTTGGAGAATC +
Preference number: 2 (lower is better)
Translates to: RPKPPYKGCKAHRRRKCPECLGQ*RTPWRI
Trigger: GATTCTCCAAGGAGTCCTTCACTGGCCTAAACATTC...TGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGCTTTGGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR TCA 90 bp GACAGATGTCCCCAAATAAAGTCCCTGCGTGTGGAGAGCTGCATCCTCCAGGCACTGATGTGTTACTCCTaGGAAGGTCCTGGAAGGGAT +
Preference number: 2 (lower is better)
Translates to: DRCPQIKSLRVESCILQALMCYS*EGPGRD
Trigger: ATCCCTTCCAGGACCTTCTCAGGAGTAACACATCAG...TGCCTGGAGGATGCAGCTCTCCACACGCAGGGACTTTATTTGGGGACATCTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR GCA 90 bp GACAGATGTCCCCAAATAAAGTCCCTGCGTGTGGAGAGCTGCATCCTCCAGGCATTGGACACACTCACCTaGCAGTCTCCTCCTGCTATT +
Preference number: 2 (lower is better)
Translates to: DRCPQIKSLRVESCILQALDTLT*QSPPAI
Trigger: AATAGCAGGAGGAGACTGGCAGGTGAGTGTGTCCAA...TGCCTGGAGGATGCAGCTCTCCACACGCAGGGACTTTATTTGGGGACATCTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR GCA 90 bp AGACCAAAGCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCAGTTTCTTCCAATGGCTaGAGCTGCAGTTTGGTTTCC +
Preference number: 2 (lower is better)
Translates to: RPKPPYKGCKAHRRRKCPVSSNG*SCSLVS
Trigger: GGAAACCAAACTGCAGCTGCAGCCATTGGAAGAAAC...TGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGCTTTGGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR GCA 90 bp ACGGTTCCCAGCGCTGATGACATACCTGATGTGTTACTCCTGAGAAGGTCCTGGCACAGGAGGAGGAAATaGCCACAGATAGCACATCCG +
Preference number: 2 (lower is better)
Translates to: TVPSADDIPDVLLLRRSWHRRRK*PQIAHP
Trigger: CGGATGTGCTATCTGTGGGCATTTCCTCCTCCTGTG...CCAGGACCTTCTCAGGAGTAACACATCAGGTATGTCATCAGCGCTGGGAACCGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp CCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATAGCACATATTGCTCTAGCTCACTaGTGGCATATCGGACTGCGG +
Preference number: 2 (lower is better)
Translates to: PYKGCKAHRRRKCPQIAHIALAH*WHIGLR
Trigger: CCGCAGTCCGATATGCCACCAGTGAGCTAGAGCAAT...ATGTGCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp GCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATAGCCAAATGTGGATTTCTTaGACACACTCACCTGCCAGT +
Preference number: 2 (lower is better)
Translates to: AAIQGLQGSQEEEMPTDSQMWIS*THSPAS
Trigger: ACTGGCAGGTGAGTGTGTCCAAGAAATCCACATTTG...GCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp CCACTGCTAGCTGGTGGACAGAGATGCCTGAAGCTGTGCGCTCTGACCCTGGGTTCTGCAGCACAAATGTaGATTTCTTGGACACACTCA +
Preference number: 2 (lower is better)
Translates to: PLLAGGQRCLKLCALTLGSAAQM*ISWTHS
Trigger: TGAGTGTGTCCAAGAAATCCACATTTGTGCTGCAGA...ACCCAGGGTCAGAGCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp TGCACTGCCCAGACCAAAGCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGCAGCTGTTGAGAAAATaGAGGAAATCGCATTCAGGT +
Preference number: 2 (lower is better)
Translates to: CTAQTKAAIQGLQGSQEEQLLRK*RKSHSG
Trigger: ACCTGAATGCGATTTCCTCCATTTTCTCAACAGCTG...CTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGCTTTGGTCTGGGCAGTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp CACAGGAGGAGGAAATGCCCACAGATAGCACATCCGCAAGGGGTGCGTGCAGCCCAGCTGTTGAGAAAATaGAGGAAATCGCATTCAGGT +
Preference number: 2 (lower is better)
Translates to: HRRRKCPQIAHPQGVRAAQLLRK*RKSHSG
Trigger: ACCTGAATGCGATTTCCTCCATTTTCTCAACAGCTG...GGCTGCACGCACCCCTTGCGGATGTGCTATCTGTGGGCATTTCCTCCTCCTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR TCA 90 bp CCACTGCTAGCTGGTGGACAGAGATGCCTGAAGCTGTGCGCTCTGACCCTGGGTTTTCTTCCATTCCCTTaGATGCCCAACATTACAGAA +
Preference number: 2 (lower is better)
Translates to: PLLAGGQRCLKLCALTLGFLPFP*MPNITE
Trigger: TTCTGTAATGTTGGGCATTCAAGGGAATGGAAGAAA...ACCCAGGGTCAGAGCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR GCA 90 bp CACAGGAGGAGGAAATGCCCACAGATAGCACATCCGCAAGGGGTGCGTGCAGCCGGTAGTGTAAGAAAATaGAATATCCCATGGAAAGGC +
Preference number: 2 (lower is better)
Translates to: HRRRKCPQIAHPQGVRAAGSVRK*NIPWKG
Trigger: GCCTTTCCATGGGATATTGCATTTTCTTACACTACC...GGCTGCACGCACCCCTTGCGGATGTGCTATCTGTGGGCATTTCCTCCTCCTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR GCA 90 bp GACAGATGTCCCCAAATAAAGTCCCTGCGTGTGGAGAGCTGCATCCTCCAGGCACTTACTCAGATACACTaGTCTCTGTTGTCCCTCCAC +
Preference number: 2 (lower is better)
Translates to: DRCPQIKSLRVESCILQALTQIH*SLLSLH
Trigger: GTGGAGGGACAACAGAGAGCAGTGTATCTGAGTAAG...TGCCTGGAGGATGCAGCTCTCCACACGCAGGGACTTTATTTGGGGACATCTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp AAGGCAACACCATCGCACTTGGCAATGCTAACATTCCCCTTAAGCAAGCTCCCGATTGCTCTAGCTCACTaGTGGCATATCGGACTGCGG +
Preference number: 2 (lower is better)
Translates to: KATPSHLAMLTFPLSKLPIALAH*WHIGLR
Trigger: CCGCAGTCCGATATGCCACCAGTGAGCTAGAGCAAT...CGGGAGCTTGCTTAAGGGGAATGTTAGCATTGCCAAGTGCGATGGTGTTGCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp CCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATAGCACATGCTGCAGCTGCAGTTTaGTTTCCAGTATCTGCAGCA +
Preference number: 2 (lower is better)
Translates to: PYKGCKAHRRRKCPQIAHAAAAV*FPVSAA
Trigger: TGCTGCAGATACTGGAAACCAAACTGCAGCTGCAGC...ATGTGCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp GCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATAGCCAGCTGTTGAGAAAATaGAGGAAATCGCATTCAGGT +
Preference number: 2 (lower is better)
Translates to: AAIQGLQGSQEEEMPTDSQLLRK*RKSHSG
Trigger: ACCTGAATGCGATTTCCTCCATTTTCTCAACAGCTG...GCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR TCA 90 bp AATAGTTATCTGACAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACAACCTCCATTCACAGTaGCCTCACCACTGCCCGGCC +
Preference number: 2 (lower is better)
Translates to: NSYLTKLRKPDLPTYTTNNLHSQ*PHHCPA
Trigger: GGCCGGGCAGTGGTGAGGTCACTGTGAATGGAGGTT...GTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTGTCAGATAACTATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR TCA 90 bp CTACCACCCAAGAGGATCATGATTATAAATCTCATTGGCCATGGCAACCCCAAAAACCTCCATTCACAGTaGCCTCACCACTGCCCGGCC +
Preference number: 2 (lower is better)
Translates to: LPPKRIMIINLIGHGNPKNLHSQ*PHHCPA
Trigger: GGCCGGGCAGTGGTGAGGTCACTGTGAATGGAGGTT...TTTGGGGTTGCCATGGCCAATGAGATTTATAATCATGATCCTCTTGGGTGGTAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR GCA 90 bp GCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATAGCTTGGTTTCCAGTATCTaGAGCACAAATGTGGATTTC +
Preference number: 2 (lower is better)
Translates to: AAIQGLQGSQEEEMPTDSLVSSI*STNVDF
Trigger: GAAATCCACATTTGTGCTGCAGATACTGGAAACCAA...GCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR GCA 90 bp CCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATAGCACATGTTTCTTCCAATGGCTaGAGCTGCAGTTTGGTTTCC +
Preference number: 2 (lower is better)
Translates to: PYKGCKAHRRRKCPQIAHVSSNG*SCSLVS
Trigger: GGAAACCAAACTGCAGCTGCAGCCATTGGAAGAAAC...ATGTGCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp ACGGTTCCCAGCGCTGATGACATACCTGATGTGTTACTCCTGAGAAGGTCCTGGTACCAAACAGTCTCCTaGATTGCTCTAGCTCACTGG +
Preference number: 2 (lower is better)
Translates to: TVPSADDIPDVLLLRRSWYQTVS*IALAHW
Trigger: CCAGTGAGCTAGAGCAATCCAGGAGACTGTTTGGTA...CCAGGACCTTCTCAGGAGTAACACATCAGGTATGTCATCAGCGCTGGGAACCGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp CAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCACAGGTTTCTTCCAATaGCTGCAGCTGCAGTTTGGT +
Preference number: 2 (lower is better)
Translates to: QSLESPTCPRTLLTHALPTGFFQ*LQLQFG
Trigger: ACCAAACTGCAGCTGCAGCCATTGGAAGAAACCTGT...GGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR CAA 90 bp GCCAGCACCAGAGGCCGGAGCGCTCTCTGCACATTAGTAGTGTCTTaGGAACTACCACCCAAGAGGATCATGATTATAAATCTCATTGGC +
Preference number: 2 (lower is better)
Translates to: ASTRGRSALCTLVVS*ELPPKRIMIINLIG
Trigger: GCCAATGAGATTTATAATCATGATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAATGTGCAGAGAGCGCTCCGGCCTCTGGTGCTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR TCA 90 bp CGGAGCGCTCTCTGCACATTAGTAGTGTCTTTGGAACTACCACCCAAGAGGATCGAATGTTTAGGCCAGTaGAGGACTCCTTGGAGAATC +
Preference number: 2 (lower is better)
Translates to: RSALCTLVVSLELPPKRIECLGQ*RTPWRI
Trigger: GATTCTCCAAGGAGTCCTTCACTGGCCTAAACATTC...GATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAATGTGCAGAGAGCGCTCCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR TCA 90 bp AGACCAAAGCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCATTTCTTCCATTCCCTTaGATGCCCAACATTACAGAA +
Preference number: 2 (lower is better)
Translates to: RPKPPYKGCKAHRRRKCPFLPFP*MPNITE
Trigger: TTCTGTAATGTTGGGCATTCAAGGGAATGGAAGAAA...TGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGCTTTGGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR GCA 90 bp CCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATAGCACATCTGCCAGTCTCCTCCTaGTATTTAAGTTTGGTGAAG +
Preference number: 2 (lower is better)
Translates to: PYKGCKAHRRRKCPQIAHLPVSS*YLSLVK
Trigger: CTTCACCAAACTTAAATAGCAGGAGGAGACTGGCAG...ATGTGCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR GCA 90 bp ACGGTTCCCAGCGCTGATGACATACCTGATGTGTTACTCCTGAGAAGGTCCTGGCTGCCAGTCTCCTCCTaGTATTTAAGTTTGGTGAAG +
Preference number: 2 (lower is better)
Translates to: TVPSADDIPDVLLLRRSWLPVSS*YLSLVK
Trigger: CTTCACCAAACTTAAATAGCAGGAGGAGACTGGCAG...CCAGGACCTTCTCAGGAGTAACACATCAGGTATGTCATCAGCGCTGGGAACCGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR GCA 90 bp AAGGCAACACCATCGCACTTGGCAATGCTAACATTCCCCTTAAGCAAGCTCCCGGTTTCTTCCAATGGCTaGAGCTGCAGTTTGGTTTCC +
Preference number: 2 (lower is better)
Translates to: KATPSHLAMLTFPLSKLPVSSNG*SCSLVS
Trigger: GGAAACCAAACTGCAGCTGCAGCCATTGGAAGAAAC...CGGGAGCTTGCTTAAGGGGAATGTTAGCATTGCCAAGTGCGATGGTGTTGCCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR GCA 90 bp CTACCACCCAAGAGGATCATGATTATAAATCTCATTGGCCATGGCAACCCCAAAGCTGGTGGACAGAGATaGCTGAAGCTGTGCGCTCTG +
Preference number: 2 (lower is better)
Translates to: LPPKRIMIINLIGHGNPKAGGQR*LKLCAL
Trigger: CAGAGCGCACAGCTTCAGGCATCTCTGTCCACCAGC...TTTGGGGTTGCCATGGCCAATGAGATTTATAATCATGATCCTCTTGGGTGGTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR TCA 90 bp GACAGATGTCCCCAAATAAAGTCCCTGCGTGTGGAGAGCTGCATCCTCCAGGCAGGAAAAATAGTTATCTaGCAAAGCTTAGAAAGCCCG +
Preference number: 2 (lower is better)
Translates to: DRCPQIKSLRVESCILQAGKIVI*QSLESP
Trigger: CGGGCTTTCTAAGCTTTGTCAGATAACTATTTTTCC...TGCCTGGAGGATGCAGCTCTCCACACGCAGGGACTTTATTTGGGGACATCTGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR GCA 90 bp AAGGCAACACCATCGCACTTGGCAATGCTAACATTCCCCTTAAGCAAGCTCCCGCTGCCAGTCTCCTCCTaGTATTTAAGTTTGGTGAAG +
Preference number: 2 (lower is better)
Translates to: KATPSHLAMLTFPLSKLPLPVSS*YLSLVK
Trigger: CTTCACCAAACTTAAATAGCAGGAGGAGACTGGCAG...CGGGAGCTTGCTTAAGGGGAATGTTAGCATTGCCAAGTGCGATGGTGTTGCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp CGGAGCGCTCTCTGCACATTAGTAGTGTCTTTGGAACTACCACCCAAGAGGATCCAAATGTGGATTTCTTaGACACACTCACCTGCCAGT +
Preference number: 2 (lower is better)
Translates to: RSALCTLVVSLELPPKRIQMWIS*THSPAS
Trigger: ACTGGCAGGTGAGTGTGTCCAAGAAATCCACATTTG...GATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAATGTGCAGAGAGCGCTCCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp ACGGTTCCCAGCGCTGATGACATACCTGATGTGTTACTCCTGAGAAGGTCCTGGAAATGCAATATCCCATaGAAAGGCAACACCATCGCA +
Preference number: 2 (lower is better)
Translates to: TVPSADDIPDVLLLRRSWKCNIP*KGNTIA
Trigger: TGCGATGGTGTTGCCTTTCCATGGGATATTGCATTT...CCAGGACCTTCTCAGGAGTAACACATCAGGTATGTCATCAGCGCTGGGAACCGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR TCA 90 bp CCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATAGCACATTTTCTTCCATTCCCTTaGATGCCCAACATTACAGAA +
Preference number: 2 (lower is better)
Translates to: PYKGCKAHRRRKCPQIAHFLPFP*MPNITE
Trigger: TTCTGTAATGTTGGGCATTCAAGGGAATGGAAGAAA...ATGTGCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR TCA 90 bp CTACCACCCAAGAGGATCATGATTATAAATCTCATTGGCCATGGCAACCCCAAAGCATCCTCCAGGCACTaGGAGAAGCACGTTGAATTG +
Preference number: 2 (lower is better)
Translates to: LPPKRIMIINLIGHGNPKASSRH*EKHVEL
Trigger: CAATTCAACGTGCTTCTCTCAGTGCCTGGAGGATGC...TTTGGGGTTGCCATGGCCAATGAGATTTATAATCATGATCCTCTTGGGTGGTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR GCA 90 bp CTTGATTTCATCTCCACTGCTAGCTGGTGGACAGAGATGCCTGAAGCTGTGCGCTTGGTTTCCAGTATCTaGAGCACAAATGTGGATTTC +
Preference number: 2 (lower is better)
Translates to: LDFISTASWWTEMPEAVRLVSSI*STNVDF
Trigger: GAAATCCACATTTGTGCTGCAGATACTGGAAACCAA...GCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGGAGATGAAATCAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR GCA 90 bp CAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCTTGGTTTCCAGTATCTaGAGCACAAATGTGGATTTC +
Preference number: 2 (lower is better)
Translates to: QSLESPTCPRTLLTHALPLVSSI*STNVDF
Trigger: GAAATCCACATTTGTGCTGCAGATACTGGAAACCAA...GGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR GCA 90 bp TTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCAGACCATTGGTTTCCAGTATCTaGAGCACAAATGTGGATTTC +
Preference number: 2 (lower is better)
Translates to: LESPTCPRTLLTHALPRPLVSSI*STNVDF
Trigger: GAAATCCACATTTGTGCTGCAGATACTGGAAACCAA...TGGTCTGGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR GCA 90 bp TTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCAGACCAGGTAGTGTAAGAAAATaGAATATCCCATGGAAAGGC +
Preference number: 2 (lower is better)
Translates to: LESPTCPRTLLTHALPRPGSVRK*NIPWKG
Trigger: GCCTTTCCATGGGATATTGCATTTTCTTACACTACC...TGGTCTGGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR GCA 90 bp ACGGTTCCCAGCGCTGATGACATACCTGATGTGTTACTCCTGAGAAGGTCCTGGAACAAACATAGGCAATaGACACTTGTCAATCACTGG +
Preference number: 2 (lower is better)
Translates to: TVPSADDIPDVLLLRRSWNKHRQ*TLVNHW
Trigger: CCAGTGATTGACAAGTGTGCATTGCCTATGTTTGTT...CCAGGACCTTCTCAGGAGTAACACATCAGGTATGTCATCAGCGCTGGGAACCGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR GCA 90 bp CTTGATTTCATCTCCACTGCTAGCTGGTGGACAGAGATGCCTGAAGCTGTGCGCGGTCACATAAACGCTTaGACACTTAAGACTTCTGAA +
Preference number: 2 (lower is better)
Translates to: LDFISTASWWTEMPEAVRGHINA*TLKTSE
Trigger: TTCAGAAGTCTTAAGTGTGCAAGCGTTTATGTGACC...GCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGGAGATGAAATCAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp AAGGCAACACCATCGCACTTGGCAATGCTAACATTCCCCTTAAGCAAGCTCCCGTCTGCAGCACAAATGTaGATTTCTTGGACACACTCA +
Preference number: 2 (lower is better)
Translates to: KATPSHLAMLTFPLSKLPSAAQM*ISWTHS
Trigger: TGAGTGTGTCCAAGAAATCCACATTTGTGCTGCAGA...CGGGAGCTTGCTTAAGGGGAATGTTAGCATTGCCAAGTGCGATGGTGTTGCCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp AAGGCAACACCATCGCACTTGGCAATGCTAACATTCCCCTTAAGCAAGCTCCCGCAGCTGTTGAGAAAATaGAGGAAATCGCATTCAGGT +
Preference number: 2 (lower is better)
Translates to: KATPSHLAMLTFPLSKLPQLLRK*RKSHSG
Trigger: ACCTGAATGCGATTTCCTCCATTTTCTCAACAGCTG...CGGGAGCTTGCTTAAGGGGAATGTTAGCATTGCCAAGTGCGATGGTGTTGCCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp GACAGATGTCCCCAAATAAAGTCCCTGCGTGTGGAGAGCTGCATCCTCCAGGCAACACTTGTCAATCACTaGAGTAGGAAACACATACTT +
Preference number: 2 (lower is better)
Translates to: DRCPQIKSLRVESCILQATLVNH*SRKHIL
Trigger: AAGTATGTGTTTCCTACTCCAGTGATTGACAAGTGT...TGCCTGGAGGATGCAGCTCTCCACACGCAGGGACTTTATTTGGGGACATCTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR GCA 90 bp CGGAGCGCTCTCTGCACATTAGTAGTGTCTTTGGAACTACCACCCAAGAGGATCGGTCACATAAACGCTTaGACACTTAAGACTTCTGAA +
Preference number: 2 (lower is better)
Translates to: RSALCTLVVSLELPPKRIGHINA*TLKTSE
Trigger: TTCAGAAGTCTTAAGTGTGCAAGCGTTTATGTGACC...GATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAATGTGCAGAGAGCGCTCCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp CTACCACCCAAGAGGATCATGATTATAAATCTCATTGGCCATGGCAACCCCAAAGCTGCAGCTGCAGTTTaGTTTCCAGTATCTGCAGCA +
Preference number: 2 (lower is better)
Translates to: LPPKRIMIINLIGHGNPKAAAAV*FPVSAA
Trigger: TGCTGCAGATACTGGAAACCAAACTGCAGCTGCAGC...TTTGGGGTTGCCATGGCCAATGAGATTTATAATCATGATCCTCTTGGGTGGTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp CTTGATTTCATCTCCACTGCTAGCTGGTGGACAGAGATGCCTGAAGCTGTGCGCTCTGTTAAAGGCATGTaGTTTGTTTTCTTCCATTCC +
Preference number: 2 (lower is better)
Translates to: LDFISTASWWTEMPEAVRSVKGM*FVFFHS
Trigger: GGAATGGAAGAAAACAAACCACATGCCTTTAACAGA...GCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGGAGATGAAATCAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp TTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCAGACCATCTGTTAAAGGCATGTaGTTTGTTTTCTTCCATTCC +
Preference number: 2 (lower is better)
Translates to: LESPTCPRTLLTHALPRPSVKGM*FVFFHS
Trigger: GGAATGGAAGAAAACAAACCACATGCCTTTAACAGA...TGGTCTGGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR GCA 90 bp AATAGTTATCTGACAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACGTTTCTTCCAATGGCTaGAGCTGCAGTTTGGTTTCC +
Preference number: 2 (lower is better)
Translates to: NSYLTKLRKPDLPTYTTNVSSNG*SCSLVS
Trigger: GGAAACCAAACTGCAGCTGCAGCCATTGGAAGAAAC...GTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTGTCAGATAACTATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR GCA 90 bp AAACATAGGCAATGCACACTTGTCAATCACTGGAGTAGGAAACACATACTTAGGCACAGGAGGAGGAAATaGCCACAGATAGCACATCCG +
Preference number: 2 (lower is better)
Translates to: KHRQCTLVNHWSRKHILRHRRRK*PQIAHP
Trigger: CGGATGTGCTATCTGTGGGCATTTCCTCCTCCTGTG...CCTAAGTATGTGTTTCCTACTCCAGTGATTGACAAGTGTGCATTGCCTATGTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp CTACCACCCAAGAGGATCATGATTATAAATCTCATTGGCCATGGCAACCCCAAAACAGGTTTCTTCCAATaGCTGCAGCTGCAGTTTGGT +
Preference number: 2 (lower is better)
Translates to: LPPKRIMIINLIGHGNPKTGFFQ*LQLQFG
Trigger: ACCAAACTGCAGCTGCAGCCATTGGAAGAAACCTGT...TTTGGGGTTGCCATGGCCAATGAGATTTATAATCATGATCCTCTTGGGTGGTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR GCA 90 bp CTACCACCCAAGAGGATCATGATTATAAATCTCATTGGCCATGGCAACCCCAAACTGCCAGTCTCCTCCTaGTATTTAAGTTTGGTGAAG +
Preference number: 2 (lower is better)
Translates to: LPPKRIMIINLIGHGNPKLPVSS*YLSLVK
Trigger: CTTCACCAAACTTAAATAGCAGGAGGAGACTGGCAG...TTTGGGGTTGCCATGGCCAATGAGATTTATAATCATGATCCTCTTGGGTGGTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp AAACATAGGCAATGCACACTTGTCAATCACTGGAGTAGGAAACACATACTTAGGTACCAAACAGTCTCCTaGATTGCTCTAGCTCACTGG +
Preference number: 2 (lower is better)
Translates to: KHRQCTLVNHWSRKHILRYQTVS*IALAHW
Trigger: CCAGTGAGCTAGAGCAATCCAGGAGACTGTTTGGTA...CCTAAGTATGTGTTTCCTACTCCAGTGATTGACAAGTGTGCATTGCCTATGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp AATAGTTATCTGACAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACAAATGCAATATCCCATaGAAAGGCAACACCATCGCA +
Preference number: 2 (lower is better)
Translates to: NSYLTKLRKPDLPTYTTNKCNIP*KGNTIA
Trigger: TGCGATGGTGTTGCCTTTCCATGGGATATTGCATTT...GTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTGTCAGATAACTATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR CAA 90 bp ACAGTTCATCTGTTAAAGGCATGTGGTTTGTTTTCTTCCATTCCCTaGAATGCCCAACATTACAGAATGTTTAGGCCAGTGAAGGACTCC +
Preference number: 2 (lower is better)
Translates to: TVHLLKACGLFSSIP*NAQHYRMFRPVKDS
Trigger: GGAGTCCTTCACTGGCCTAAACATTCTGTAATGTTGGGCATTCAAGGGAATGGAAGAAAACAAACCACATGCCTTTAACAGATGAACTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR TCA 90 bp CTACCACCCAAGAGGATCATGATTATAAATCTCATTGGCCATGGCAACCCCAAATTTCTTCCATTCCCTTaGATGCCCAACATTACAGAA +
Preference number: 2 (lower is better)
Translates to: LPPKRIMIINLIGHGNPKFLPFP*MPNITE
Trigger: TTCTGTAATGTTGGGCATTCAAGGGAATGGAAGAAA...TTTGGGGTTGCCATGGCCAATGAGATTTATAATCATGATCCTCTTGGGTGGTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR TCA 90 bp TGCATGATAGAAATGGCTCATCTTCACGTGAAACACTTGGGTTCATTTTCATTCTATCACAGATCTGACTaGCAGGAAACAGTAGTGGCC +
Preference number: 2 (lower is better)
Translates to: CMIEMAHLHVKHLGSFSFYHRSD*QETVVA
Trigger: GGCCACTACTGTTTCCTGTCAGTCAGATCTGTGATA...GAATGAAAATGAACCCAAGTGTTTCACGTGAAGATGAGCCATTTCTATCATGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000234460.2
3UTR-3UTR GCA 90 bp CTACCACCCAAGAGGATCATGATTATAAATCTCATTGGCCATGGCAACCCCAAAGGTAGTGTAAGAAAATaGAATATCCCATGGAAAGGC +
Preference number: 2 (lower is better)
Translates to: LPPKRIMIINLIGHGNPKGSVRK*NIPWKG
Trigger: GCCTTTCCATGGGATATTGCATTTTCTTACACTACC...TTTGGGGTTGCCATGGCCAATGAGATTTATAATCATGATCCTCTTGGGTGGTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR GCA 90 bp CTACCACCCAAGAGGATCATGATTATAAATCTCATTGGCCATGGCAACCCCAAAGGTCACATAAACGCTTaGACACTTAAGACTTCTGAA +
Preference number: 2 (lower is better)
Translates to: LPPKRIMIINLIGHGNPKGHINA*TLKTSE
Trigger: TTCAGAAGTCTTAAGTGTGCAAGCGTTTATGTGACC...TTTGGGGTTGCCATGGCCAATGAGATTTATAATCATGATCCTCTTGGGTGGTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp TGCATGATAGAAATGGCTCATCTTCACGTGAAACACTTGGGTTCATTTTCATTCTACCAAACAGTCTCCTaGATTGCTCTAGCTCACTGG +
Preference number: 2 (lower is better)
Translates to: CMIEMAHLHVKHLGSFSFYQTVS*IALAHW
Trigger: CCAGTGAGCTAGAGCAATCCAGGAGACTGTTTGGTA...GAATGAAAATGAACCCAAGTGTTTCACGTGAAGATGAGCCATTTCTATCATGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp TTAGTAGTGTCTTTGGAACTACCACCCAAGAGGATCATGATTATAAATCTCATTGCTGCAGCTGCAGTTTaGTTTCCAGTATCTGCAGCA +
Preference number: 2 (lower is better)
Translates to: LVVSLELPPKRIMIINLIAAAAV*FPVSAA
Trigger: TGCTGCAGATACTGGAAACCAAACTGCAGCTGCAGC...AATGAGATTTATAATCATGATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp AAACATAGGCAATGCACACTTGTCAATCACTGGAGTAGGAAACACATACTTAGGAAATGCAATATCCCATaGAAAGGCAACACCATCGCA +
Preference number: 2 (lower is better)
Translates to: KHRQCTLVNHWSRKHILRKCNIP*KGNTIA
Trigger: TGCGATGGTGTTGCCTTTCCATGGGATATTGCATTT...CCTAAGTATGTGTTTCCTACTCCAGTGATTGACAAGTGTGCATTGCCTATGTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR TCA 90 bp TTAGTAGTGTCTTTGGAACTACCACCCAAGAGGATCATGATTATAAATCTCATTTGGCAACCCCAAAGGTaGCAGATGTCCCCAAATAAA +
Preference number: 2 (lower is better)
Translates to: LVVSLELPPKRIMIINLIWQPQR*QMSPNK
Trigger: TTTATTTGGGGACATCTGTCACCTTTGGGGTTGCCA...AATGAGATTTATAATCATGATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp TGCATGATAGAAATGGCTCATCTTCACGTGAAACACTTGGGTTCATTTTCATTCTCTGCAGCACAAATGTaGATTTCTTGGACACACTCA +
Preference number: 2 (lower is better)
Translates to: CMIEMAHLHVKHLGSFSFSAAQM*ISWTHS
Trigger: TGAGTGTGTCCAAGAAATCCACATTTGTGCTGCAGA...GAATGAAAATGAACCCAAGTGTTTCACGTGAAGATGAGCCATTTCTATCATGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp TTAGTAGTGTCTTTGGAACTACCACCCAAGAGGATCATGATTATAAATCTCATTACAGGTTTCTTCCAATaGCTGCAGCTGCAGTTTGGT +
Preference number: 2 (lower is better)
Translates to: LVVSLELPPKRIMIINLITGFFQ*LQLQFG
Trigger: ACCAAACTGCAGCTGCAGCCATTGGAAGAAACCTGT...AATGAGATTTATAATCATGATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CCA 90 bp TTAGTAGTGTCTTTGGAACTACCACCCAAGAGGATCATGATTATAAATCTCATTCAAATGTGGATTTCTTaGACACACTCACCTGCCAGT +
Preference number: 2 (lower is better)
Translates to: LVVSLELPPKRIMIINLIQMWIS*THSPAS
Trigger: ACTGGCAGGTGAGTGTGTCCAAGAAATCCACATTTG...AATGAGATTTATAATCATGATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR GCA 72 bp TGGCAGCTTGAGAGCCAGCAGCCACTCGAGCGATGGTaGCTGAGAGGCCTCCAGCTGTTGAGAAAATGGAGG +
Preference number: 3 (lower is better)
Translates to: WQLESQQPLERW*LRGLQLLRKWR
Trigger: CCTCCATTTTCTCAACAGCTGGAGGCCTCTCAGGCACCATCGCTCGAGTGGCTGCTGGCTCTCAAGCTGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR TCA 72 bp TGTCCGATCTCATGGGAAACAAACCTCCATTCACAGTaGCCTCACCACTGCCCGGCCCGTTACCTGGCCCCA +
Preference number: 3 (lower is better)
Translates to: CPISWETNLHSQ*PHHCPARYLAP
Trigger: TGGGGCCAGGTAACGGGCCGGGCAGTGGTGAGGTCACTGTGAATGGAGGTTTGTTTCCCATGAGATCGGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR GCA 72 bp CCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATaGCCACAGATAGCACATCCGCAAGGGGTGCGTGCA +
Preference number: 3 (lower is better)
Translates to: PYKGCKAHRRRK*PQIAHPQGVRA
Trigger: TGCACGCACCCCTTGCGGATGTGCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR GCA 72 bp CATGCACTGCCCAGACCAAAGCCGCCATACAAGGGCTaGAAGGCTCACAGGAGGAGGAAATGCCCACAGATA +
Preference number: 3 (lower is better)
Translates to: HALPRPKPPYKG*KAHRRRKCPQI
Trigger: TATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGCTTTGGTCTGGGCAGTGCATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR GCA 72 bp AGAAAGCCCGACCTGCCCACGTACACTACTAACACATaGACTGCCCAGACCAAAGCCGCCATACAAGGGCTG +
Preference number: 3 (lower is better)
Translates to: RKPDLPTYTTNT*TAQTKAAIQGL
Trigger: CAGCCCTTGTATGGCGGCTTTGGTCTGGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR GCA 72 bp ACAGTAGTGGCCAGCACCAGAGGCCGGAGCGCTCTCTaGACATTAGTAGTGTCTTTGGAACTACCACCCAAG +
Preference number: 3 (lower is better)
Translates to: TVVASTRGRSAL*TLVVSLELPPK
Trigger: CTTGGGTGGTAGTTCCAAAGACACTACTAATGTGCAGAGAGCGCTCCGGCCTCTGGTGCTGGCCACTACTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CAA 90 bp AGACCAAAGCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACCAGTGAAGGACTCCTaGGAGAATCGATTCTCTCAG +
Preference number: 3 (lower is better)
Translates to: RPKPPYKGCKAHRRRKCPPVKDS*ENRFSQ
Trigger: CTGAGAGAATCGATTCTCCAAGGAGTCCTTCACTGG...TGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGCTTTGGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CAA 90 bp CTTGATTTCATCTCCACTGCTAGCTGGTGGACAGAGATGCCTGAAGCTGTGCGCATACACTGCTCTCTGTaGTCCCTCCACACACCCTCG +
Preference number: 3 (lower is better)
Translates to: LDFISTASWWTEMPEAVRIHCSL*SLHTPS
Trigger: CGAGGGTGTGTGGAGGGACAACAGAGAGCAGTGTAT...GCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGGAGATGAAATCAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR GCA 72 bp TTGATTTCATCTCCACTGCTAGCTGGTGGACAGAGATaGCTGAAGCTGTGCGCTCTGACCCTGGGTGAAGAC +
Preference number: 3 (lower is better)
Translates to: LISSPLLAGGQR*LKLCALTLGED
Trigger: GTCTTCACCCAGGGTCAGAGCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGGAGATGAAATCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CAA 90 bp AGACCAAAGCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCAACAAATGTGGATTTCTaGGACACACTCACCTGCCAG +
Preference number: 3 (lower is better)
Translates to: RPKPPYKGCKAHRRRKCPTNVDF*DTLTCQ
Trigger: CTGGCAGGTGAGTGTGTCCAAGAAATCCACATTTGT...TGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGCTTTGGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CAA 90 bp CAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCGCAACACCATCGCACTaGGCAATGCTAACATTCCCC +
Preference number: 3 (lower is better)
Translates to: QSLESPTCPRTLLTHALPATPSH*AMLTFP
Trigger: GGGGAATGTTAGCATTGCCAAGTGCGATGGTGTTGC...GGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CAA 90 bp TTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCAGACCAGCAACACCATCGCACTaGGCAATGCTAACATTCCCC +
Preference number: 3 (lower is better)
Translates to: LESPTCPRTLLTHALPRPATPSH*AMLTFP
Trigger: GGGGAATGTTAGCATTGCCAAGTGCGATGGTGTTGC...TGGTCTGGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CAA 90 bp GACAGATGTCCCCAAATAAAGTCCCTGCGTGTGGAGAGCTGCATCCTCCAGGCACCAGTGAAGGACTCCTaGGAGAATCGATTCTCTCAG +
Preference number: 3 (lower is better)
Translates to: DRCPQIKSLRVESCILQAPVKDS*ENRFSQ
Trigger: CTGAGAGAATCGATTCTCCAAGGAGTCCTTCACTGG...TGCCTGGAGGATGCAGCTCTCCACACGCAGGGACTTTATTTGGGGACATCTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR GCA 72 bp TGGGATAGAGCAATCTGTACACAAGCCACTGAGGGCTaGTCCTCGTCAGAACTTAGAAAGGCAGCACCTAGG +
Preference number: 3 (lower is better)
Translates to: WDRAICTQATEG*SSSELRKAAPR
Trigger: CCTAGGTGCTGCCTTTCTAAGTTCTGACGAGGAGCAGCCCTCAGTGGCTTGTGTACAGATTGCTCTATCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR GCA 72 bp AACGCACTTCGATGTGTGCATCTTACTCAGATACACTaGTCTCTGTTGTCCCTCCACACACCCTCGGCACAG +
Preference number: 3 (lower is better)
Translates to: NALRCVHLTQIH*SLLSLHTPSAQ
Trigger: CTGTGCCGAGGGTGTGTGGAGGGACAACAGAGAGCAGTGTATCTGAGTAAGATGCACACATCGAAGTGCGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR CCA 72 bp ATCTACCAAACAGTCTCCTGGATTGCTCTAGCTCACTaGTGGCATATCGGACTGCGGACAGTGTCCGATCTC +
Preference number: 3 (lower is better)
Translates to: IYQTVSWIALAH*WHIGLRTVSDL
Trigger: GAGATCGGACACTGTCCGCAGTCCGATATGCCACCAGTGAGCTAGAGCAATCCAGGAGACTGTTTGGTAGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR CCA 72 bp TTGCAAGGTCTTGATTTCATCTCCACTGCTAGCTGGTaGACAGAGATGCCTGAAGCTGTGCGCTCTGACCCT +
Preference number: 3 (lower is better)
Translates to: LQGLDFISTASW*TEMPEAVRSDP
Trigger: AGGGTCAGAGCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGGAGATGAAATCAAGACCTTGCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CAA 90 bp GACAGATGTCCCCAAATAAAGTCCCTGCGTGTGGAGAGCTGCATCCTCCAGGCAACAAATGTGGATTTCTaGGACACACTCACCTGCCAG +
Preference number: 3 (lower is better)
Translates to: DRCPQIKSLRVESCILQATNVDF*DTLTCQ
Trigger: CTGGCAGGTGAGTGTGTCCAAGAAATCCACATTTGT...TGCCTGGAGGATGCAGCTCTCCACACGCAGGGACTTTATTTGGGGACATCTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CAA 90 bp TTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCAGACCAAGAGGCCTCCAGCTGTaGAGAAAATGGAGGAAATCG +
Preference number: 3 (lower is better)
Translates to: LESPTCPRTLLTHALPRPRGLQL*RKWRKS
Trigger: CGATTTCCTCCATTTTCTCAACAGCTGGAGGCCTCT...TGGTCTGGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CAA 90 bp CGGAGCGCTCTCTGCACATTAGTAGTGTCTTTGGAACTACCACCCAAGAGGATCGCAACACCATCGCACTaGGCAATGCTAACATTCCCC +
Preference number: 3 (lower is better)
Translates to: RSALCTLVVSLELPPKRIATPSH*AMLTFP
Trigger: GGGGAATGTTAGCATTGCCAAGTGCGATGGTGTTGC...GATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAATGTGCAGAGAGCGCTCCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CAA 90 bp CCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATAGCACATCCAGTGAAGGACTCCTaGGAGAATCGATTCTCTCAG +
Preference number: 3 (lower is better)
Translates to: PYKGCKAHRRRKCPQIAHPVKDS*ENRFSQ
Trigger: CTGAGAGAATCGATTCTCCAAGGAGTCCTTCACTGG...ATGTGCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CAA 90 bp CCACTGCTAGCTGGTGGACAGAGATGCCTGAAGCTGTGCGCTCTGACCCTGGGTTTTTCTTCCATTCCCTaGAATGCCCAACATTACAGA +
Preference number: 3 (lower is better)
Translates to: PLLAGGQRCLKLCALTLGFSSIP*NAQHYR
Trigger: TCTGTAATGTTGGGCATTCAAGGGAATGGAAGAAAA...ACCCAGGGTCAGAGCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR CCA 72 bp CGATGGTGCCTGAGAGGCCTCCAGCTGTTGAGAAAATaGAGGAAATCGCATTCAGGTAACAGGTTTCTTCCA +
Preference number: 3 (lower is better)
Translates to: RWCLRGLQLLRK*RKSHSGNRFLP
Trigger: TGGAAGAAACCTGTTACCTGAATGCGATTTCCTCCATTTTCTCAACAGCTGGAGGCCTCTCAGGCACCATCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR CCA 72 bp ATTTTGCAAGGTCTTGATTTCATCTCCACTGCTAGCTaGTGGACAGAGATGCCTGAAGCTGTGCGCTCTGAC +
Preference number: 3 (lower is better)
Translates to: ILQGLDFISTAS*WTEMPEAVRSD
Trigger: GTCAGAGCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGGAGATGAAATCAAGACCTTGCAAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CAA 90 bp CTACCACCCAAGAGGATCATGATTATAAATCTCATTGGCCATGGCAACCCCAAAATACACTGCTCTCTGTaGTCCCTCCACACACCCTCG +
Preference number: 3 (lower is better)
Translates to: LPPKRIMIINLIGHGNPKIHCSL*SLHTPS
Trigger: CGAGGGTGTGTGGAGGGACAACAGAGAGCAGTGTAT...TTTGGGGTTGCCATGGCCAATGAGATTTATAATCATGATCCTCTTGGGTGGTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR CCA 72 bp GGAGGAAATCGCATTCAGGTAACAGGTTTCTTCCAATaGCTGCAGCTGCAGTTTGGTTTCCAGTATCTGCAG +
Preference number: 3 (lower is better)
Translates to: GGNRIQVTGFFQ*LQLQFGFQYLQ
Trigger: CTGCAGATACTGGAAACCAAACTGCAGCTGCAGCCATTGGAAGAAACCTGTTACCTGAATGCGATTTCCTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CAA 90 bp TTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCAGACCATTTTCTTCCATTCCCTaGAATGCCCAACATTACAGA +
Preference number: 3 (lower is better)
Translates to: LESPTCPRTLLTHALPRPFSSIP*NAQHYR
Trigger: TCTGTAATGTTGGGCATTCAAGGGAATGGAAGAAAA...TGGTCTGGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CAA 90 bp CTTGATTTCATCTCCACTGCTAGCTGGTGGACAGAGATGCCTGAAGCTGTGCGCTTTTCTTCCATTCCCTaGAATGCCCAACATTACAGA +
Preference number: 3 (lower is better)
Translates to: LDFISTASWWTEMPEAVRFSSIP*NAQHYR
Trigger: TCTGTAATGTTGGGCATTCAAGGGAATGGAAGAAAA...GCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGGAGATGAAATCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CAA 90 bp CAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCTTAAAGGCATGTGGTTaGTTTTCTTCCATTCCCTTG +
Preference number: 3 (lower is better)
Translates to: QSLESPTCPRTLLTHALPLKACG*FSSIPL
Trigger: CAAGGGAATGGAAGAAAACAAACCACATGCCTTTAA...GGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CAA 90 bp CGGAGCGCTCTCTGCACATTAGTAGTGTCTTTGGAACTACCACCCAAGAGGATCCCATTTTGCAAGGTCTaGATTTCATCTCCACTGCTA +
Preference number: 3 (lower is better)
Translates to: RSALCTLVVSLELPPKRIPFCKV*ISSPLL
Trigger: TAGCAGTGGAGATGAAATCAAGACCTTGCAAAATGG...GATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAATGTGCAGAGAGCGCTCCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CAA 90 bp CTACCACCCAAGAGGATCATGATTATAAATCTCATTGGCCATGGCAACCCCAAACCAGTGAAGGACTCCTaGGAGAATCGATTCTCTCAG +
Preference number: 3 (lower is better)
Translates to: LPPKRIMIINLIGHGNPKPVKDS*ENRFSQ
Trigger: CTGAGAGAATCGATTCTCCAAGGAGTCCTTCACTGG...TTTGGGGTTGCCATGGCCAATGAGATTTATAATCATGATCCTCTTGGGTGGTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR GCA 72 bp CAAGCACGTCTGGACATCTCGGGTAGTGTAAGAAAATaGAATATCCCATGGAAAGGCAACACCATCGCACTT +
Preference number: 3 (lower is better)
Translates to: QARLDISGSVRK*NIPWKGNTIAL
Trigger: AAGTGCGATGGTGTTGCCTTTCCATGGGATATTGCATTTTCTTACACTACCCGAGATGTCCAGACGTGCTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR CCA 72 bp TTTGGTGAAGTTGTGAACATCTACCAAACAGTCTCCTaGATTGCTCTAGCTCACTGGTGGCATATCGGACTG +
Preference number: 3 (lower is better)
Translates to: FGEVVNIYQTVS*IALAHWWHIGL
Trigger: CAGTCCGATATGCCACCAGTGAGCTAGAGCAATCCAGGAGACTGTTTGGTAGATGTTCACAACTTCACCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR CCA 72 bp TGGTTTCCAGTATCTGCAGCACAAATGTGGATTTCTTaGACACACTCACCTGCCAGTCTCCTCCTGCTATTT +
Preference number: 3 (lower is better)
Translates to: WFPVSAAQMWIS*THSPASLLLLF
Trigger: AAATAGCAGGAGGAGACTGGCAGGTGAGTGTGTCCAAGAAATCCACATTTGTGCTGCAGATACTGGAAACCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CAA 90 bp CTACCACCCAAGAGGATCATGATTATAAATCTCATTGGCCATGGCAACCCCAAAACAAATGTGGATTTCTaGGACACACTCACCTGCCAG +
Preference number: 3 (lower is better)
Translates to: LPPKRIMIINLIGHGNPKTNVDF*DTLTCQ
Trigger: CTGGCAGGTGAGTGTGTCCAAGAAATCCACATTTGT...TTTGGGGTTGCCATGGCCAATGAGATTTATAATCATGATCCTCTTGGGTGGTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CAA 90 bp AAACATAGGCAATGCACACTTGTCAATCACTGGAGTAGGAAACACATACTTAGGGCAACACCATCGCACTaGGCAATGCTAACATTCCCC +
Preference number: 3 (lower is better)
Translates to: KHRQCTLVNHWSRKHILRATPSH*AMLTFP
Trigger: GGGGAATGTTAGCATTGCCAAGTGCGATGGTGTTGC...CCTAAGTATGTGTTTCCTACTCCAGTGATTGACAAGTGTGCATTGCCTATGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CAA 90 bp TGCATGATAGAAATGGCTCATCTTCACGTGAAACACTTGGGTTCATTTTCATTCATACACTGCTCTCTGTaGTCCCTCCACACACCCTCG +
Preference number: 3 (lower is better)
Translates to: CMIEMAHLHVKHLGSFSFIHCSL*SLHTPS
Trigger: CGAGGGTGTGTGGAGGGACAACAGAGAGCAGTGTAT...GAATGAAAATGAACCCAAGTGTTTCACGTGAAGATGAGCCATTTCTATCATGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000234460.2
3UTR TCA 72 bp GAGAGCTGCATCCTCCAGGCACTGAGAGAAGCACGTTaGATTGTTGTTCATCTCCTAGTATCCATTTTGCAA +
Preference number: 3 (lower is better)
Translates to: ESCILQALREAR*IVVHLLVSILQ
Trigger: TTGCAAAATGGATACTAGGAGATGAACAACAATTCAACGTGCTTCTCTCAGTGCCTGGAGGATGCAGCTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR CCA 72 bp GACATCTCGGGTAGTGTAAGAAAATGCAATATCCCATaGAAAGGCAACACCATCGCACTTGGCAATGCTAAC +
Preference number: 3 (lower is better)
Translates to: DISGSVRKCNIP*KGNTIALGNAN
Trigger: GTTAGCATTGCCAAGTGCGATGGTGTTGCCTTTCCATGGGATATTGCATTTTCTTACACTACCCGAGATGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CAA 90 bp TGCATGATAGAAATGGCTCATCTTCACGTGAAACACTTGGGTTCATTTTCATTCACAAATGTGGATTTCTaGGACACACTCACCTGCCAG +
Preference number: 3 (lower is better)
Translates to: CMIEMAHLHVKHLGSFSFTNVDF*DTLTCQ
Trigger: CTGGCAGGTGAGTGTGTCCAAGAAATCCACATTTGT...GAATGAAAATGAACCCAAGTGTTTCACGTGAAGATGAGCCATTTCTATCATGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000234460.2
3UTR-3UTR CAA 90 bp TGCATGATAGAAATGGCTCATCTTCACGTGAAACACTTGGGTTCATTTTCATTCAAGAAGTCAGGTGGCTaGAAATCTCCCTTTGAAAGA +
Preference number: 3 (lower is better)
Translates to: CMIEMAHLHVKHLGSFSFKKSGG*KSPFER
Trigger: TCTTTCAAAGGGAGATTTCAAGCCACCTGACTTCTT...GAATGAAAATGAACCCAAGTGTTTCACGTGAAGATGAGCCATTTCTATCATGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000234460.2
3UTR TCA 72 bp AGAATCGATTCTCTCAGAATCATGGTTTACTATACATaGAAAGCTCTTCAACAAACCAAGGCTTGCTTCTGG +
Preference number: 3 (lower is better)
Translates to: RIDSLRIMVYYT*KALQQTKACFW
Trigger: CCAGAAGCAAGCCTTGGTTTGTTGAAGAGCTTTTCATGTATAGTAAACCATGATTCTGAGAGAATCGATTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR-3UTR CAA 90 bp TTAGTAGTGTCTTTGGAACTACCACCCAAGAGGATCATGATTATAAATCTCATTTTAAAGGCATGTGGTTaGTTTTCTTCCATTCCCTTG +
Preference number: 3 (lower is better)
Translates to: LVVSLELPPKRIMIINLILKACG*FSSIPL
Trigger: CAAGGGAATGGAAGAAAACAAACCACATGCCTTTAA...AATGAGATTTATAATCATGATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp CCACTGCTAGCTGGTGGACAGAGATGCCTGAAGCTGTGCGCTCTGACCCTGGGTTCCCACACCCTGACATaGGGTTGCAGAGGCCTTCCA +
Preference number: 4 (lower is better)
Translates to: PLLAGGQRCLKLCALTLGSHTLT*GCRGLP
Trigger: TGGAAGGCCTCTGCAACCCCATGTCAGGGTGTGGGA...ACCCAGGGTCAGAGCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp CCACTGCTAGCTGGTGGACAGAGATGCCTGAAGCTGTGCGCTCTGACCCTGGGTCACCCGAGTCTCCAGTaGGAACATCTCCATTCCCCA +
Preference number: 4 (lower is better)
Translates to: PLLAGGQRCLKLCALTLGHPSLQ*EHLHSP
Trigger: TGGGGAATGGAGATGTTCTCACTGGAGACTCGGGTG...ACCCAGGGTCAGAGCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp CCACTGCTAGCTGGTGGACAGAGATGCCTGAAGCTGTGCGCTCTGACCCTGGGTGTCCACTCCAGCCTGTaGTCCACTGAGTTCCACATG +
Preference number: 4 (lower is better)
Translates to: PLLAGGQRCLKLCALTLGVHSSL*STEFHM
Trigger: CATGTGGAACTCAGTGGAGCACAGGCTGGAGTGGAC...ACCCAGGGTCAGAGCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp CCACTGCTAGCTGGTGGACAGAGATGCCTGAAGCTGTGCGCTCTGACCCTGGGTCGCATCACAGACAGCTaGTCATTGCCATCCGTGTGG +
Preference number: 4 (lower is better)
Translates to: PLLAGGQRCLKLCALTLGRITDS*SLPSVW
Trigger: CCACACGGATGGCAATGAGCAGCTGTCTGTGATGCG...ACCCAGGGTCAGAGCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp CACAGGAGGAGGAAATGCCCACAGATAGCACATCCGCAAGGGGTGCGTGCAGCCCGCATCACAGACAGCTaGTCATTGCCATCCGTGTGG +
Preference number: 4 (lower is better)
Translates to: HRRRKCPQIAHPQGVRAARITDS*SLPSVW
Trigger: CCACACGGATGGCAATGAGCAGCTGTCTGTGATGCG...GGCTGCACGCACCCCTTGCGGATGTGCTATCTGTGGGCATTTCCTCCTCCTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp CCACTGCTAGCTGGTGGACAGAGATGCCTGAAGCTGTGCGCTCTGACCCTGGGTCTGACGTTGGTCACATaGCTGCTGTGGGCACTGTAC +
Preference number: 4 (lower is better)
Translates to: PLLAGGQRCLKLCALTLGLTLVT*LLWALY
Trigger: GTACAGTGCCCACAGCAGCCATGTGACCAACGTCAG...ACCCAGGGTCAGAGCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp GCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATAGCTGTTCTCCACTAGTGTaGGGGAGCTGCCCATCCTGC +
Preference number: 4 (lower is better)
Translates to: AAIQGLQGSQEEEMPTDSCSPLV*GSCPSC
Trigger: GCAGGATGGGCAGCTCCCCCACACTAGTGGAGAACA...GCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp CACAGGAGGAGGAAATGCCCACAGATAGCACATCCGCAAGGGGTGCGTGCAGCCCTGAGTGCGTTCCAATaGCTACCACTGTACCGCTTG +
Preference number: 4 (lower is better)
Translates to: HRRRKCPQIAHPQGVRAALSAFQ*LPLYRL
Trigger: CAAGCGGTACAGTGGTAGCCATTGGAACGCACTCAG...GGCTGCACGCACCCCTTGCGGATGTGCTATCTGTGGGCATTTCCTCCTCCTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp TGCACTGCCCAGACCAAAGCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGTGGGAGCCTTGGCTTTaGAGCAGGGGTACTGAAAGA +
Preference number: 4 (lower is better)
Translates to: CTAQTKAAIQGLQGSQEEWEPWL*SRGTER
Trigger: TCTTTCAGTACCCCTGCTCCAAAGCCAAGGCTCCCA...CTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGCTTTGGTCTGGGCAGTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp AGACCAAAGCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCATGTTCTCCACTAGTGTaGGGGAGCTGCCCATCCTGC +
Preference number: 4 (lower is better)
Translates to: RPKPPYKGCKAHRRRKCPCSPLV*GSCPSC
Trigger: GCAGGATGGGCAGCTCCCCCACACTAGTGGAGAACA...TGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGCTTTGGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp TGCACTGCCCAGACCAAAGCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGATACCCACTCCAGTTTaGGCTTCTCTGGAGGCAGTT +
Preference number: 4 (lower is better)
Translates to: CTAQTKAAIQGLQGSQEEIPTPV*ASLEAV
Trigger: AACTGCCTCCAGAGAAGCTCAAACTGGAGTGGGTAT...CTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGCTTTGGTCTGGGCAGTGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp TGCACTGCCCAGACCAAAGCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGACTGTACCGCTTGGATaGAAGTCTGCACAGTGTCCT +
Preference number: 4 (lower is better)
Translates to: CTAQTKAAIQGLQGSQEETVPLG*KSAQCP
Trigger: AGGACACTGTGCAGACTTTCATCCAAGCGGTACAGT...CTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGCTTTGGTCTGGGCAGTGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp CCACTGCTAGCTGGTGGACAGAGATGCCTGAAGCTGTGCGCTCTGACCCTGGGTGCCATCCGTGTGGATTaGCACCAGATCTCTTGTTTC +
Preference number: 4 (lower is better)
Translates to: PLLAGGQRCLKLCALTLGAIRVD*HQISCF
Trigger: GAAACAAGAGATCTGGTGTCAATCCACACGGATGGC...ACCCAGGGTCAGAGCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp CAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCGGGCTGGGGAGAAGGTaGCGCTCGAATTTGTGGGCT +
Preference number: 4 (lower is better)
Translates to: QSLESPTCPRTLLTHALPGLGRR*RSNLWA
Trigger: AGCCCACAAATTCGAGCGTCACCTTCTCCCCAGCCC...GGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096766.12
CDS-3UTR GCA 90 bp CCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATAGCACATGGGAGCTGCCCATCCTaGTTTCCTCTTCAGCCGTCC +
Preference number: 4 (lower is better)
Translates to: PYKGCKAHRRRKCPQIAHGSCPS*FPLQPS
Trigger: GGACGGCTGAAGAGGAAAGCAGGATGGGCAGCTCCC...ATGTGCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp TTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCAGACCAGGGAGCTGCCCATCCTaGTTTCCTCTTCAGCCGTCC +
Preference number: 4 (lower is better)
Translates to: LESPTCPRTLLTHALPRPGSCPS*FPLQPS
Trigger: GGACGGCTGAAGAGGAAAGCAGGATGGGCAGCTCCC...TGGTCTGGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp GACAGATGTCCCCAAATAAAGTCCCTGCGTGTGGAGAGCTGCATCCTCCAGGCATCCCACACCCTGACATaGGGTTGCAGAGGCCTTCCA +
Preference number: 4 (lower is better)
Translates to: DRCPQIKSLRVESCILQASHTLT*GCRGLP
Trigger: TGGAAGGCCTCTGCAACCCCATGTCAGGGTGTGGGA...TGCCTGGAGGATGCAGCTCTCCACACGCAGGGACTTTATTTGGGGACATCTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp ACGGTTCCCAGCGCTGATGACATACCTGATGTGTTACTCCTGAGAAGGTCCTGGGGCTGTGAAGAGGGCTaGGGAGAAGGTGACGCTCGA +
Preference number: 4 (lower is better)
Translates to: TVPSADDIPDVLLLRRSWGCEEG*GEGDAR
Trigger: TCGAGCGTCACCTTCTCCCCAGCCCTCTTCACAGCC...CCAGGACCTTCTCAGGAGTAACACATCAGGTATGTCATCAGCGCTGGGAACCGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096766.12
CDS-3UTR TCA 90 bp TGCACTGCCCAGACCAAAGCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGCAAGCTTCCACTGAATaGTGCTCATATCCTTCCCAC +
Preference number: 4 (lower is better)
Translates to: CTAQTKAAIQGLQGSQEEQASTE*CSYPSH
Trigger: GTGGGAAGGATATGAGCATCATTCAGTGGAAGCTTG...CTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGCTTTGGTCTGGGCAGTGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp AGACCAAAGCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCATTCTGCCCTTCCCTCTaGAACTGCTCTAATGGTGCC +
Preference number: 4 (lower is better)
Translates to: RPKPPYKGCKAHRRRKCPFCPSL*NCSNGA
Trigger: GGCACCATTAGAGCAGTTGCAGAGGGAAGGGCAGAA...TGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGCTTTGGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp CACAGGAGGAGGAAATGCCCACAGATAGCACATCCGCAAGGGGTGCGTGCAGCCAGCTTCTCGAAGGCTTaGTTGGCCTTTACTTGGCAT +
Preference number: 4 (lower is better)
Translates to: HRRRKCPQIAHPQGVRAASFSKA*LAFTWH
Trigger: ATGCCAAGTAAAGGCCAACCAAGCCTTCGAGAAGCT...GGCTGCACGCACCCCTTGCGGATGTGCTATCTGTGGGCATTTCCTCCTCCTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp GACAGATGTCCCCAAATAAAGTCCCTGCGTGTGGAGAGCTGCATCCTCCAGGCATGTGACTGGGAGCCTTaGCTTTGGAGCAGGGGTACT +
Preference number: 4 (lower is better)
Translates to: DRCPQIKSLRVESCILQACDWEP*LWSRGT
Trigger: AGTACCCCTGCTCCAAAGCCAAGGCTCCCAGTCACA...TGCCTGGAGGATGCAGCTCTCCACACGCAGGGACTTTATTTGGGGACATCTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp GACAGATGTCCCCAAATAAAGTCCCTGCGTGTGGAGAGCTGCATCCTCCAGGCACTGACGTTGGTCACATaGCTGCTGTGGGCACTGTAC +
Preference number: 4 (lower is better)
Translates to: DRCPQIKSLRVESCILQALTLVT*LLWALY
Trigger: GTACAGTGCCCACAGCAGCCATGTGACCAACGTCAG...TGCCTGGAGGATGCAGCTCTCCACACGCAGGGACTTTATTTGGGGACATCTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp CCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATAGCACATTGTTCTCCACTAGTGTaGGGGAGCTGCCCATCCTGC +
Preference number: 4 (lower is better)
Translates to: PYKGCKAHRRRKCPQIAHCSPLV*GSCPSC
Trigger: GCAGGATGGGCAGCTCCCCCACACTAGTGGAGAACA...ATGTGCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp CAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCTGTTCTCCACTAGTGTaGGGGAGCTGCCCATCCTGC +
Preference number: 4 (lower is better)
Translates to: QSLESPTCPRTLLTHALPCSPLV*GSCPSC
Trigger: GCAGGATGGGCAGCTCCCCCACACTAGTGGAGAACA...GGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp CCACTGCTAGCTGGTGGACAGAGATGCCTGAAGCTGTGCGCTCTGACCCTGGGTTCAAGAGCAAATCTTTaGAGGGATGTGTTGCAAGGC +
Preference number: 4 (lower is better)
Translates to: PLLAGGQRCLKLCALTLGSRANL*RDVLQG
Trigger: GCCTTGCAACACATCCCTTCAAAGATTTGCTCTTGA...ACCCAGGGTCAGAGCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp TTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCAGACCACACACCTGCCTGTCCTaGGCACACGTCAAGAGCAAA +
Preference number: 4 (lower is better)
Translates to: LESPTCPRTLLTHALPRPHTCLS*AHVKSK
Trigger: TTTGCTCTTGACGTGTGCTCAGGACAGGCAGGTGTG...TGGTCTGGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp CTTGATTTCATCTCCACTGCTAGCTGGTGGACAGAGATGCCTGAAGCTGTGCGCCACACCTGCCTGTCCTaGGCACACGTCAAGAGCAAA +
Preference number: 4 (lower is better)
Translates to: LDFISTASWWTEMPEAVRHTCLS*AHVKSK
Trigger: TTTGCTCTTGACGTGTGCTCAGGACAGGCAGGTGTG...GCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGGAGATGAAATCAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp AGACCAAAGCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCAACTGTACCGCTTGGATaGAAGTCTGCACAGTGTCCT +
Preference number: 4 (lower is better)
Translates to: RPKPPYKGCKAHRRRKCPTVPLG*KSAQCP
Trigger: AGGACACTGTGCAGACTTTCATCCAAGCGGTACAGT...TGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGCTTTGGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp TTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCAGACCATGGGCACTGTACTTGTaGCTGGGAGCCTTGGCTTTG +
Preference number: 4 (lower is better)
Translates to: LESPTCPRTLLTHALPRPWALYL*LGALAL
Trigger: CAAAGCCAAGGCTCCCAGTCACAAGTACAGTGCCCA...TGGTCTGGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp ACGGTTCCCAGCGCTGATGACATACCTGATGTGTTACTCCTGAGAAGGTCCTGGTGGGCACTGTACTTGTaGCTGGGAGCCTTGGCTTTG +
Preference number: 4 (lower is better)
Translates to: TVPSADDIPDVLLLRRSWWALYL*LGALAL
Trigger: CAAAGCCAAGGCTCCCAGTCACAAGTACAGTGCCCA...CCAGGACCTTCTCAGGAGTAACACATCAGGTATGTCATCAGCGCTGGGAACCGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp AGACCAAAGCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACCTTCCCTCTGCAACTaGTCTAATGGTGCCATACTG +
Preference number: 4 (lower is better)
Translates to: RPKPPYKGCKAHRRRKCPPSLCN*SNGAIL
Trigger: CAGTATGGCACCATTAGAGCAGTTGCAGAGGGAAGG...TGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGCTTTGGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp AGACCAAAGCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGACAGCTGCTCATTaGCATCCGTGTGGATTGACA +
Preference number: 4 (lower is better)
Translates to: RPKPPYKGCKAHRRRKCPQTAAH*HPCGLT
Trigger: TGTCAATCCACACGGATGGCAATGAGCAGCTGTCTG...TGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGCTTTGGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp ACGGTTCCCAGCGCTGATGACATACCTGATGTGTTACTCCTGAGAAGGTCCTGGCGCATCACAGACAGCTaGTCATTGCCATCCGTGTGG +
Preference number: 4 (lower is better)
Translates to: TVPSADDIPDVLLLRRSWRITDS*SLPSVW
Trigger: CCACACGGATGGCAATGAGCAGCTGTCTGTGATGCG...CCAGGACCTTCTCAGGAGTAACACATCAGGTATGTCATCAGCGCTGGGAACCGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp AAGGCAACACCATCGCACTTGGCAATGCTAACATTCCCCTTAAGCAAGCTCCCGTCCCACACCCTGACATaGGGTTGCAGAGGCCTTCCA +
Preference number: 4 (lower is better)
Translates to: KATPSHLAMLTFPLSKLPSHTLT*GCRGLP
Trigger: TGGAAGGCCTCTGCAACCCCATGTCAGGGTGTGGGA...CGGGAGCTTGCTTAAGGGGAATGTTAGCATTGCCAAGTGCGATGGTGTTGCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp ACGGTTCCCAGCGCTGATGACATACCTGATGTGTTACTCCTGAGAAGGTCCTGGTGTGACTGGGAGCCTTaGCTTTGGAGCAGGGGTACT +
Preference number: 4 (lower is better)
Translates to: TVPSADDIPDVLLLRRSWCDWEP*LWSRGT
Trigger: AGTACCCCTGCTCCAAAGCCAAGGCTCCCAGTCACA...CCAGGACCTTCTCAGGAGTAACACATCAGGTATGTCATCAGCGCTGGGAACCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp CAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCTGTGACTGGGAGCCTTaGCTTTGGAGCAGGGGTACT +
Preference number: 4 (lower is better)
Translates to: QSLESPTCPRTLLTHALPCDWEP*LWSRGT
Trigger: AGTACCCCTGCTCCAAAGCCAAGGCTCCCAGTCACA...GGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR CAA 72 bp CCACTCGAGCGATGGTGCCTGAGAGGCCTCCAGCTGTaGAGAAAATGGAGGAAATCGCATTCAGGTAACAGG +
Preference number: 4 (lower is better)
Translates to: PLERWCLRGLQL*RKWRKSHSGNR
Trigger: CCTGTTACCTGAATGCGATTTCCTCCATTTTCTCAACAGCTGGAGGCCTCTCAGGCACCATCGCTCGAGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp CCACTGCTAGCTGGTGGACAGAGATGCCTGAAGCTGTGCGCTCTGACCCTGGGTGAGGCAGTTCTGTTCTaGTGTCATCATAGTTGTCAA +
Preference number: 4 (lower is better)
Translates to: PLLAGGQRCLKLCALTLGEAVLF*CHHSCQ
Trigger: TTGACAACTATGATGACATCAGAACAGAACTGCCTC...ACCCAGGGTCAGAGCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp CACAGGAGGAGGAAATGCCCACAGATAGCACATCCGCAAGGGGTGCGTGCAGCCAACACACTGCCATCATaGGCTTTGATTTGTCTGTTG +
Preference number: 4 (lower is better)
Translates to: HRRRKCPQIAHPQGVRAANTLPS*ALICLL
Trigger: CAACAGACAAATCAAAGCTCATGATGGCAGTGTGTT...GGCTGCACGCACCCCTTGCGGATGTGCTATCTGTGGGCATTTCCTCCTCCTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp AAGGCAACACCATCGCACTTGGCAATGCTAACATTCCCCTTAAGCAAGCTCCCGCACACCTGCCTGTCCTaGGCACACGTCAAGAGCAAA +
Preference number: 4 (lower is better)
Translates to: KATPSHLAMLTFPLSKLPHTCLS*AHVKSK
Trigger: TTTGCTCTTGACGTGTGCTCAGGACAGGCAGGTGTG...CGGGAGCTTGCTTAAGGGGAATGTTAGCATTGCCAAGTGCGATGGTGTTGCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp GACAGATGTCCCCAAATAAAGTCCCTGCGTGTGGAGAGCTGCATCCTCCAGGCAGCCATCCGTGTGGATTaGCACCAGATCTCTTGTTTC +
Preference number: 4 (lower is better)
Translates to: DRCPQIKSLRVESCILQAAIRVD*HQISCF
Trigger: GAAACAAGAGATCTGGTGTCAATCCACACGGATGGC...TGCCTGGAGGATGCAGCTCTCCACACGCAGGGACTTTATTTGGGGACATCTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp CGGAGCGCTCTCTGCACATTAGTAGTGTCTTTGGAACTACCACCCAAGAGGATCTGGGCACTGTACTTGTaGCTGGGAGCCTTGGCTTTG +
Preference number: 4 (lower is better)
Translates to: RSALCTLVVSLELPPKRIWALYL*LGALAL
Trigger: CAAAGCCAAGGCTCCCAGTCACAAGTACAGTGCCCA...GATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAATGTGCAGAGAGCGCTCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp GCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATAGCTCCACAAGCTTCCACTaGATGATGCTCATATCCTTC +
Preference number: 4 (lower is better)
Translates to: AAIQGLQGSQEEEMPTDSSTSFH*MMLISF
Trigger: GAAGGATATGAGCATCATTCAGTGGAAGCTTGTGGA...GCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp CCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATAGCACATCACTGGCGTCTGTTATaGCCTCGTTTTGAGGCACAG +
Preference number: 4 (lower is better)
Translates to: PYKGCKAHRRRKCPQIAHHWRLL*PRFEAQ
Trigger: CTGTGCCTCAAAACGAGGTCATAACAGACGCCAGTG...ATGTGCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp TTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCAGACCACACTGGCGTCTGTTATaGCCTCGTTTTGAGGCACAG +
Preference number: 4 (lower is better)
Translates to: LESPTCPRTLLTHALPRPHWRLL*PRFEAQ
Trigger: CTGTGCCTCAAAACGAGGTCATAACAGACGCCAGTG...TGGTCTGGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp CCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATAGCACATTTCTGCCCTTCCCTCTaGAACTGCTCTAATGGTGCC +
Preference number: 4 (lower is better)
Translates to: PYKGCKAHRRRKCPQIAHFCPSL*NCSNGA
Trigger: GGCACCATTAGAGCAGTTGCAGAGGGAAGGGCAGAA...ATGTGCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp CTTGATTTCATCTCCACTGCTAGCTGGTGGACAGAGATGCCTGAAGCTGTGCGCTTCTGCCCTTCCCTCTaGAACTGCTCTAATGGTGCC +
Preference number: 4 (lower is better)
Translates to: LDFISTASWWTEMPEAVRFCPSL*NCSNGA
Trigger: GGCACCATTAGAGCAGTTGCAGAGGGAAGGGCAGAA...GCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGGAGATGAAATCAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp AAGGCAACACCATCGCACTTGGCAATGCTAACATTCCCCTTAAGCAAGCTCCCGGTCCACTCCAGCCTGTaGTCCACTGAGTTCCACATG +
Preference number: 4 (lower is better)
Translates to: KATPSHLAMLTFPLSKLPVHSSL*STEFHM
Trigger: CATGTGGAACTCAGTGGAGCACAGGCTGGAGTGGAC...CGGGAGCTTGCTTAAGGGGAATGTTAGCATTGCCAAGTGCGATGGTGTTGCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp CTTGATTTCATCTCCACTGCTAGCTGGTGGACAGAGATGCCTGAAGCTGTGCGCAACCACCTGCCTGAGTaGGTTCCAATGGCTACCACT +
Preference number: 4 (lower is better)
Translates to: LDFISTASWWTEMPEAVRNHLPE*VPMATT
Trigger: AGTGGTAGCCATTGGAACGCACTCAGGCAGGTGGTT...GCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGGAGATGAAATCAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp AAGGCAACACCATCGCACTTGGCAATGCTAACATTCCCCTTAAGCAAGCTCCCGCGCATCACAGACAGCTaGTCATTGCCATCCGTGTGG +
Preference number: 4 (lower is better)
Translates to: KATPSHLAMLTFPLSKLPRITDS*SLPSVW
Trigger: CCACACGGATGGCAATGAGCAGCTGTCTGTGATGCG...CGGGAGCTTGCTTAAGGGGAATGTTAGCATTGCCAAGTGCGATGGTGTTGCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp GCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATAGCCAGTTTGAGCTTCTCTaGAGGCAGTTCTGTTCTGAT +
Preference number: 4 (lower is better)
Translates to: AAIQGLQGSQEEEMPTDSQFELL*RQFCSD
Trigger: ATCAGAACAGAACTGCCTCCAGAGAAGCTCAAACTG...GCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp ACGGTTCCCAGCGCTGATGACATACCTGATGTGTTACTCCTGAGAAGGTCCTGGCTGAGTGCGTTCCAATaGCTACCACTGTACCGCTTG +
Preference number: 4 (lower is better)
Translates to: TVPSADDIPDVLLLRRSWLSAFQ*LPLYRL
Trigger: CAAGCGGTACAGTGGTAGCCATTGGAACGCACTCAG...CCAGGACCTTCTCAGGAGTAACACATCAGGTATGTCATCAGCGCTGGGAACCGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp TTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCAGACCATGGGAGCCTTGGCTTTaGAGCAGGGGTACTGAAAGA +
Preference number: 4 (lower is better)
Translates to: LESPTCPRTLLTHALPRPWEPWL*SRGTER
Trigger: TCTTTCAGTACCCCTGCTCCAAAGCCAAGGCTCCCA...TGGTCTGGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp CAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCCACTGTACTTGTGACTaGGAGCCTTGGCTTTGGAGC +
Preference number: 4 (lower is better)
Translates to: QSLESPTCPRTLLTHALPHCTCD*EPWLWS
Trigger: GCTCCAAAGCCAAGGCTCCCAGTCACAAGTACAGTG...GGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR CAA 72 bp CGATGTGTGCATCTTACTCAGATACACTGCTCTCTGTaGTCCCTCCACACACCCTCGGCACAGCGTGTGAAT +
Preference number: 4 (lower is better)
Translates to: RCVHLTQIHCSL*SLHTPSAQRVN
Trigger: ATTCACACGCTGTGCCGAGGGTGTGTGGAGGGACAACAGAGAGCAGTGTATCTGAGTAAGATGCACACATCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp GCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATAGCTCATCTTCTTGTTGTTaGACTCGTGACTCAAGAGCT +
Preference number: 4 (lower is better)
Translates to: AAIQGLQGSQEEEMPTDSSSSCC*TRDSRA
Trigger: AGCTCTTGAGTCACGAGTTCAACAACAAGAAGATGA...GCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp ACGGTTCCCAGCGCTGATGACATACCTGATGTGTTACTCCTGAGAAGGTCCTGGACTGTACCGCTTGGATaGAAGTCTGCACAGTGTCCT +
Preference number: 4 (lower is better)
Translates to: TVPSADDIPDVLLLRRSWTVPLG*KSAQCP
Trigger: AGGACACTGTGCAGACTTTCATCCAAGCGGTACAGT...CCAGGACCTTCTCAGGAGTAACACATCAGGTATGTCATCAGCGCTGGGAACCGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp AAGGCAACACCATCGCACTTGGCAATGCTAACATTCCCCTTAAGCAAGCTCCCGCACTGGCGTCTGTTATaGCCTCGTTTTGAGGCACAG +
Preference number: 4 (lower is better)
Translates to: KATPSHLAMLTFPLSKLPHWRLL*PRFEAQ
Trigger: CTGTGCCTCAAAACGAGGTCATAACAGACGCCAGTG...CGGGAGCTTGCTTAAGGGGAATGTTAGCATTGCCAAGTGCGATGGTGTTGCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp CCACTGCTAGCTGGTGGACAGAGATGCCTGAAGCTGTGCGCTCTGACCCTGGGTAACGTCAGAGGTACTTaGAGCAGAAATACTATCATC +
Preference number: 4 (lower is better)
Translates to: PLLAGGQRCLKLCALTLGNVRGT*SRNTII
Trigger: GATGATAGTATTTCTGCTGCAAGTACCTCTGACGTT...ACCCAGGGTCAGAGCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp TGCACTGCCCAGACCAAAGCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGTCCATTCCCCAAGAATaGCAAACACTGAACGAATTT +
Preference number: 4 (lower is better)
Translates to: CTAQTKAAIQGLQGSQEESIPQE*QTLNEF
Trigger: AAATTCGTTCAGTGTTTGGCATTCTTGGGGAATGGA...CTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGCTTTGGTCTGGGCAGTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp CCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATAGCACATCCTTCCCTCTGCAACTaGTCTAATGGTGCCATACTG +
Preference number: 4 (lower is better)
Translates to: PYKGCKAHRRRKCPQIAHPSLCN*SNGAIL
Trigger: CAGTATGGCACCATTAGAGCAGTTGCAGAGGGAAGG...ATGTGCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp CCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATAGCACATCAGACAGCTGCTCATTaGCATCCGTGTGGATTGACA +
Preference number: 4 (lower is better)
Translates to: PYKGCKAHRRRKCPQIAHQTAAH*HPCGLT
Trigger: TGTCAATCCACACGGATGGCAATGAGCAGCTGTCTG...ATGTGCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp CTTGATTTCATCTCCACTGCTAGCTGGTGGACAGAGATGCCTGAAGCTGTGCGCTCTCGAAGGCTTGGTTaGCCTTTACTTGGCATGGAC +
Preference number: 4 (lower is better)
Translates to: LDFISTASWWTEMPEAVRSRRLG*PLLGMD
Trigger: GTCCATGCCAAGTAAAGGCCAACCAAGCCTTCGAGA...GCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGGAGATGAAATCAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp TTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCAGACCATCTCGAAGGCTTGGTTaGCCTTTACTTGGCATGGAC +
Preference number: 4 (lower is better)
Translates to: LESPTCPRTLLTHALPRPSRRLG*PLLGMD
Trigger: GTCCATGCCAAGTAAAGGCCAACCAAGCCTTCGAGA...TGGTCTGGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp CCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATAGCACATTCTCGAAGGCTTGGTTaGCCTTTACTTGGCATGGAC +
Preference number: 4 (lower is better)
Translates to: PYKGCKAHRRRKCPQIAHSRRLG*PLLGMD
Trigger: GTCCATGCCAAGTAAAGGCCAACCAAGCCTTCGAGA...ATGTGCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp CCACTGCTAGCTGGTGGACAGAGATGCCTGAAGCTGTGCGCTCTGACCCTGGGTTTTGCATCTGTTGGGTaGAATTCTACAGCCAAAACA +
Preference number: 4 (lower is better)
Translates to: PLLAGGQRCLKLCALTLGFASVG*NSTAKT
Trigger: TGTTTTGGCTGTAGAATTCCACCCAACAGATGCAAA...ACCCAGGGTCAGAGCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp CCACTGCTAGCTGGTGGACAGAGATGCCTGAAGCTGTGCGCTCTGACCCTGGGTTGTATTTGCATCTGTTaGGTGGAATTCTACAGCCAA +
Preference number: 4 (lower is better)
Translates to: PLLAGGQRCLKLCALTLGCICIC*VEFYSQ
Trigger: TTGGCTGTAGAATTCCACCCAACAGATGCAAATACA...ACCCAGGGTCAGAGCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp CGGAGCGCTCTCTGCACATTAGTAGTGTCTTTGGAACTACCACCCAAGAGGATCCTGAGTGCGTTCCAATaGCTACCACTGTACCGCTTG +
Preference number: 4 (lower is better)
Translates to: RSALCTLVVSLELPPKRILSAFQ*LPLYRL
Trigger: CAAGCGGTACAGTGGTAGCCATTGGAACGCACTCAG...GATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAATGTGCAGAGAGCGCTCCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp GCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATAGCTATATGCTTATTGTCTaGGGACCAGTCAAGGTGTGT +
Preference number: 4 (lower is better)
Translates to: AAIQGLQGSQEEEMPTDSYMLIV*GPVKVC
Trigger: ACACACCTTGACTGGTCCCCAGACAATAAGCATATA...GCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp CTTGATTTCATCTCCACTGCTAGCTGGTGGACAGAGATGCCTGAAGCTGTGCGCAAGAGGCAGGGGTTTTaGTCACACTGGCGTCTGTTA +
Preference number: 4 (lower is better)
Translates to: LDFISTASWWTEMPEAVRKRQGF*SHWRLL
Trigger: TAACAGACGCCAGTGTGACCAAAACCCCTGCCTCTT...GCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGGAGATGAAATCAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp TTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCAGACCAAAGAGGCAGGGGTTTTaGTCACACTGGCGTCTGTTA +
Preference number: 4 (lower is better)
Translates to: LESPTCPRTLLTHALPRPKRQGF*SHWRLL
Trigger: TAACAGACGCCAGTGTGACCAAAACCCCTGCCTCTT...TGGTCTGGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp CAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCAAGAGGCAGGGGTTTTaGTCACACTGGCGTCTGTTA +
Preference number: 4 (lower is better)
Translates to: QSLESPTCPRTLLTHALPKRQGF*SHWRLL
Trigger: TAACAGACGCCAGTGTGACCAAAACCCCTGCCTCTT...GGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp AAGGCAACACCATCGCACTTGGCAATGCTAACATTCCCCTTAAGCAAGCTCCCGATACCCACTCCAGTTTaGGCTTCTCTGGAGGCAGTT +
Preference number: 4 (lower is better)
Translates to: KATPSHLAMLTFPLSKLPIPTPV*ASLEAV
Trigger: AACTGCCTCCAGAGAAGCTCAAACTGGAGTGGGTAT...CGGGAGCTTGCTTAAGGGGAATGTTAGCATTGCCAAGTGCGATGGTGTTGCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp GACAGATGTCCCCAAATAAAGTCCCTGCGTGTGGAGAGCTGCATCCTCCAGGCATCAAGAGCAAATCTTTaGAGGGATGTGTTGCAAGGC +
Preference number: 4 (lower is better)
Translates to: DRCPQIKSLRVESCILQASRANL*RDVLQG
Trigger: GCCTTGCAACACATCCCTTCAAAGATTTGCTCTTGA...TGCCTGGAGGATGCAGCTCTCCACACGCAGGGACTTTATTTGGGGACATCTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp AAGGCAACACCATCGCACTTGGCAATGCTAACATTCCCCTTAAGCAAGCTCCCGGCCATCCGTGTGGATTaGCACCAGATCTCTTGTTTC +
Preference number: 4 (lower is better)
Translates to: KATPSHLAMLTFPLSKLPAIRVD*HQISCF
Trigger: GAAACAAGAGATCTGGTGTCAATCCACACGGATGGC...CGGGAGCTTGCTTAAGGGGAATGTTAGCATTGCCAAGTGCGATGGTGTTGCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp CTTGATTTCATCTCCACTGCTAGCTGGTGGACAGAGATGCCTGAAGCTGTGCGCCAAGCTTCCACTGAATaGTGCTCATATCCTTCCCAC +
Preference number: 4 (lower is better)
Translates to: LDFISTASWWTEMPEAVRQASTE*CSYPSH
Trigger: GTGGGAAGGATATGAGCATCATTCAGTGGAAGCTTG...GCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGGAGATGAAATCAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp GACAGATGTCCCCAAATAAAGTCCCTGCGTGTGGAGAGCTGCATCCTCCAGGCATCCACAAGCTTCCACTaGATGATGCTCATATCCTTC +
Preference number: 4 (lower is better)
Translates to: DRCPQIKSLRVESCILQASTSFH*MMLISF
Trigger: GAAGGATATGAGCATCATTCAGTGGAAGCTTGTGGA...TGCCTGGAGGATGCAGCTCTCCACACGCAGGGACTTTATTTGGGGACATCTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp AAGGCAACACCATCGCACTTGGCAATGCTAACATTCCCCTTAAGCAAGCTCCCGCCTTCCCTCTGCAACTaGTCTAATGGTGCCATACTG +
Preference number: 4 (lower is better)
Translates to: KATPSHLAMLTFPLSKLPPSLCN*SNGAIL
Trigger: CAGTATGGCACCATTAGAGCAGTTGCAGAGGGAAGG...CGGGAGCTTGCTTAAGGGGAATGTTAGCATTGCCAAGTGCGATGGTGTTGCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp CCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATAGCACATTTTGAAGGGATGTGTTaGAAGGCCCCAGAGTTCATC +
Preference number: 4 (lower is better)
Translates to: PYKGCKAHRRRKCPQIAHFEGMC*KAPEFI
Trigger: GATGAACTCTGGGGCCTTGCAACACATCCCTTCAAA...ATGTGCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp AGACCAAAGCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATCTCTTGTTTCTaGATCCAGAACAAACCACCT +
Preference number: 4 (lower is better)
Translates to: RPKPPYKGCKAHRRRKCPQISCF*IQNKPP
Trigger: AGGTGGTTTGTTCTGGATGCAGAAACAAGAGATCTG...TGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGCTTTGGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp CGGAGCGCTCTCTGCACATTAGTAGTGTCTTTGGAACTACCACCCAAGAGGATCCAGACAGCTGCTCATTaGCATCCGTGTGGATTGACA +
Preference number: 4 (lower is better)
Translates to: RSALCTLVVSLELPPKRIQTAAH*HPCGLT
Trigger: TGTCAATCCACACGGATGGCAATGAGCAGCTGTCTG...GATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAATGTGCAGAGAGCGCTCCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp CTACCACCCAAGAGGATCATGATTATAAATCTCATTGGCCATGGCAACCCCAAAGGGAGCTGCCCATCCTaGTTTCCTCTTCAGCCGTCC +
Preference number: 4 (lower is better)
Translates to: LPPKRIMIINLIGHGNPKGSCPS*FPLQPS
Trigger: GGACGGCTGAAGAGGAAAGCAGGATGGGCAGCTCCC...TTTGGGGTTGCCATGGCCAATGAGATTTATAATCATGATCCTCTTGGGTGGTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp AATAGTTATCTGACAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACGGGAGCTGCCCATCCTaGTTTCCTCTTCAGCCGTCC +
Preference number: 4 (lower is better)
Translates to: NSYLTKLRKPDLPTYTTNGSCPS*FPLQPS
Trigger: GGACGGCTGAAGAGGAAAGCAGGATGGGCAGCTCCC...GTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTGTCAGATAACTATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp CGGAGCGCTCTCTGCACATTAGTAGTGTCTTTGGAACTACCACCCAAGAGGATCTCTCGAAGGCTTGGTTaGCCTTTACTTGGCATGGAC +
Preference number: 4 (lower is better)
Translates to: RSALCTLVVSLELPPKRISRRLG*PLLGMD
Trigger: GTCCATGCCAAGTAAAGGCCAACCAAGCCTTCGAGA...GATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAATGTGCAGAGAGCGCTCCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp CCACTGCTAGCTGGTGGACAGAGATGCCTGAAGCTGTGCGCTCTGACCCTGGGTAATGAACATTGTAATTaGCCGACCTCGCATAAACAT +
Preference number: 4 (lower is better)
Translates to: PLLAGGQRCLKLCALTLGNEHCN*PTSHKH
Trigger: ATGTTTATGCGAGGTCGGCCAATTACAATGTTCATT...ACCCAGGGTCAGAGCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp ACGGTTCCCAGCGCTGATGACATACCTGATGTGTTACTCCTGAGAAGGTCCTGGTACCACTGTACCGCTTaGATGAAAGTCTGCACAGTG +
Preference number: 4 (lower is better)
Translates to: TVPSADDIPDVLLLRRSWYHCTA*MKVCTV
Trigger: CACTGTGCAGACTTTCATCCAAGCGGTACAGTGGTA...CCAGGACCTTCTCAGGAGTAACACATCAGGTATGTCATCAGCGCTGGGAACCGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp CAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCTACCACTGTACCGCTTaGATGAAAGTCTGCACAGTG +
Preference number: 4 (lower is better)
Translates to: QSLESPTCPRTLLTHALPYHCTA*MKVCTV
Trigger: CACTGTGCAGACTTTCATCCAAGCGGTACAGTGGTA...GGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp AGACCAAAGCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCATATATGCTTATTGTCTaGGGACCAGTCAAGGTGTGT +
Preference number: 4 (lower is better)
Translates to: RPKPPYKGCKAHRRRKCPYMLIV*GPVKVC
Trigger: ACACACCTTGACTGGTCCCCAGACAATAAGCATATA...TGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGCTTTGGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp GACAGATGTCCCCAAATAAAGTCCCTGCGTGTGGAGAGCTGCATCCTCCAGGCAGAGGCAGTTCTGTTCTaGTGTCATCATAGTTGTCAA +
Preference number: 4 (lower is better)
Translates to: DRCPQIKSLRVESCILQAEAVLF*CHHSCQ
Trigger: TTGACAACTATGATGACATCAGAACAGAACTGCCTC...TGCCTGGAGGATGCAGCTCTCCACACGCAGGGACTTTATTTGGGGACATCTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp CAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCTCAAGAGCAAATCTTTaGAGGGATGTGTTGCAAGGC +
Preference number: 4 (lower is better)
Translates to: QSLESPTCPRTLLTHALPSRANL*RDVLQG
Trigger: GCCTTGCAACACATCCCTTCAAAGATTTGCTCTTGA...GGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp AGACCAAAGCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCAAATCTGATCGGTTCCTaGTTAGTTTGCAGCCATTTT +
Preference number: 4 (lower is better)
Translates to: RPKPPYKGCKAHRRRKCPNLIGS*LVCSHF
Trigger: AAAATGGCTGCAAACTAATCAGGAACCGATCAGATT...TGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGCTTTGGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp TGCACTGCCCAGACCAAAGCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGTATGATTCTGTTTTCTaGTTATACCACTTCCATTGG +
Preference number: 4 (lower is better)
Translates to: CTAQTKAAIQGLQGSQEEYDSVF*LYHFHW
Trigger: CCAATGGAAGTGGTATAAGCAGAAAACAGAATCATA...CTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGCTTTGGTCTGGGCAGTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp GACAGATGTCCCCAAATAAAGTCCCTGCGTGTGGAGAGCTGCATCCTCCAGGCATTCTTGTTAGTGAGTTaGCACTCCAGGTCCAGAAAA +
Preference number: 4 (lower is better)
Translates to: DRCPQIKSLRVESCILQAFLLVS*HSRSRK
Trigger: TTTTCTGGACCTGGAGTGGCAACTCACTAACAAGAA...TGCCTGGAGGATGCAGCTCTCCACACGCAGGGACTTTATTTGGGGACATCTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp AAGGCAACACCATCGCACTTGGCAATGCTAACATTCCCCTTAAGCAAGCTCCCGTTTGAAGGGATGTGTTaGAAGGCCCCAGAGTTCATC +
Preference number: 4 (lower is better)
Translates to: KATPSHLAMLTFPLSKLPFEGMC*KAPEFI
Trigger: GATGAACTCTGGGGCCTTGCAACACATCCCTTCAAA...CGGGAGCTTGCTTAAGGGGAATGTTAGCATTGCCAAGTGCGATGGTGTTGCCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp CCACTGCTAGCTGGTGGACAGAGATGCCTGAAGCTGTGCGCTCTGACCCTGGGTTGCACTTTCCATATCTaGTGTATTTTCTTCCGTTTT +
Preference number: 4 (lower is better)
Translates to: PLLAGGQRCLKLCALTLGCTFHI*CIFFRF
Trigger: AAAACGGAAGAAAATACAGCAGATATGGAAAGTGCA...ACCCAGGGTCAGAGCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp GACAGATGTCCCCAAATAAAGTCCCTGCGTGTGGAGAGCTGCATCCTCCAGGCAGAAAGAGATGAACTTTaGAGAAATCATCGGCCACTG +
Preference number: 4 (lower is better)
Translates to: DRCPQIKSLRVESCILQAERDEL*RNHRPL
Trigger: CAGTGGCCGATGATTTCTGCAAAGTTCATCTCTTTC...TGCCTGGAGGATGCAGCTCTCCACACGCAGGGACTTTATTTGGGGACATCTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp CCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATAGCACATCAGTTTGAGCTTCTCTaGAGGCAGTTCTGTTCTGAT +
Preference number: 4 (lower is better)
Translates to: PYKGCKAHRRRKCPQIAHQFELL*RQFCSD
Trigger: ATCAGAACAGAACTGCCTCCAGAGAAGCTCAAACTG...ATGTGCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp TTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCAGACCACAGTTTGAGCTTCTCTaGAGGCAGTTCTGTTCTGAT +
Preference number: 4 (lower is better)
Translates to: LESPTCPRTLLTHALPRPQFELL*RQFCSD
Trigger: ATCAGAACAGAACTGCCTCCAGAGAAGCTCAAACTG...TGGTCTGGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp CTACCACCCAAGAGGATCATGATTATAAATCTCATTGGCCATGGCAACCCCAAATCCCACACCCTGACATaGGGTTGCAGAGGCCTTCCA +
Preference number: 4 (lower is better)
Translates to: LPPKRIMIINLIGHGNPKSHTLT*GCRGLP
Trigger: TGGAAGGCCTCTGCAACCCCATGTCAGGGTGTGGGA...TTTGGGGTTGCCATGGCCAATGAGATTTATAATCATGATCCTCTTGGGTGGTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp TCCAATGGCTGCAGCTGCAGTTTGGTTTCCAGTATCTGCAGCACAAATGTGGATCTGAGTGCGTTCCAATaGCTACCACTGTACCGCTTG +
Preference number: 4 (lower is better)
Translates to: SNGCSCSLVSSICSTNVDLSAFQ*LPLYRL
Trigger: CAAGCGGTACAGTGGTAGCCATTGGAACGCACTCAG...ATCCACATTTGTGCTGCAGATACTGGAAACCAAACTGCAGCTGCAGCCATTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp TTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCAGACCATCATCTTCTTGTTGTTaGACTCGTGACTCAAGAGCT +
Preference number: 4 (lower is better)
Translates to: LESPTCPRTLLTHALPRPSSSCC*TRDSRA
Trigger: AGCTCTTGAGTCACGAGTTCAACAACAAGAAGATGA...TGGTCTGGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp CCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATAGCACATTCATCTTCTTGTTGTTaGACTCGTGACTCAAGAGCT +
Preference number: 4 (lower is better)
Translates to: PYKGCKAHRRRKCPQIAHSSSCC*TRDSRA
Trigger: AGCTCTTGAGTCACGAGTTCAACAACAAGAAGATGA...ATGTGCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp ACGGTTCCCAGCGCTGATGACATACCTGATGTGTTACTCCTGAGAAGGTCCTGGTCATCTTCTTGTTGTTaGACTCGTGACTCAAGAGCT +
Preference number: 4 (lower is better)
Translates to: TVPSADDIPDVLLLRRSWSSSCC*TRDSRA
Trigger: AGCTCTTGAGTCACGAGTTCAACAACAAGAAGATGA...CCAGGACCTTCTCAGGAGTAACACATCAGGTATGTCATCAGCGCTGGGAACCGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp TCCAATGGCTGCAGCTGCAGTTTGGTTTCCAGTATCTGCAGCACAAATGTGGATATACCCACTCCAGTTTaGGCTTCTCTGGAGGCAGTT +
Preference number: 4 (lower is better)
Translates to: SNGCSCSLVSSICSTNVDIPTPV*ASLEAV
Trigger: AACTGCCTCCAGAGAAGCTCAAACTGGAGTGGGTAT...ATCCACATTTGTGCTGCAGATACTGGAAACCAAACTGCAGCTGCAGCCATTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp CTACCACCCAAGAGGATCATGATTATAAATCTCATTGGCCATGGCAACCCCAAACACCCGAGTCTCCAGTaGGAACATCTCCATTCCCCA +
Preference number: 4 (lower is better)
Translates to: LPPKRIMIINLIGHGNPKHPSLQ*EHLHSP
Trigger: TGGGGAATGGAGATGTTCTCACTGGAGACTCGGGTG...TTTGGGGTTGCCATGGCCAATGAGATTTATAATCATGATCCTCTTGGGTGGTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp AATAGTTATCTGACAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACCACCCGAGTCTCCAGTaGGAACATCTCCATTCCCCA +
Preference number: 4 (lower is better)
Translates to: NSYLTKLRKPDLPTYTTNHPSLQ*EHLHSP
Trigger: TGGGGAATGGAGATGTTCTCACTGGAGACTCGGGTG...GTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTGTCAGATAACTATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp CTTGATTTCATCTCCACTGCTAGCTGGTGGACAGAGATGCCTGAAGCTGTGCGCAACACACTGCCATCATaGGCTTTGATTTGTCTGTTG +
Preference number: 4 (lower is better)
Translates to: LDFISTASWWTEMPEAVRNTLPS*ALICLL
Trigger: CAACAGACAAATCAAAGCTCATGATGGCAGTGTGTT...GCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGGAGATGAAATCAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp TTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCAGACCAAACACACTGCCATCATaGGCTTTGATTTGTCTGTTG +
Preference number: 4 (lower is better)
Translates to: LESPTCPRTLLTHALPRPNTLPS*ALICLL
Trigger: CAACAGACAAATCAAAGCTCATGATGGCAGTGTGTT...TGGTCTGGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp AATAGTTATCTGACAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACCACACCTGCCTGTCCTaGGCACACGTCAAGAGCAAA +
Preference number: 4 (lower is better)
Translates to: NSYLTKLRKPDLPTYTTNHTCLS*AHVKSK
Trigger: TTTGCTCTTGACGTGTGCTCAGGACAGGCAGGTGTG...GTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTGTCAGATAACTATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp TGTAAGAAAATGCAATATCCCATGGAAAGGCAACACCATCGCACTTGGCAATGCTGGGCACTGTACTTGTaGCTGGGAGCCTTGGCTTTG +
Preference number: 4 (lower is better)
Translates to: CKKMQYPMERQHHRTWQCWALYL*LGALAL
Trigger: CAAAGCCAAGGCTCCCAGTCACAAGTACAGTGCCCA...GCATTGCCAAGTGCGATGGTGTTGCCTTTCCATGGGATATTGCATTTTCTTACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp CGGAGCGCTCTCTGCACATTAGTAGTGTCTTTGGAACTACCACCCAAGAGGATCTCCACAAGCTTCCACTaGATGATGCTCATATCCTTC +
Preference number: 4 (lower is better)
Translates to: RSALCTLVVSLELPPKRISTSFH*MMLISF
Trigger: GAAGGATATGAGCATCATTCAGTGGAAGCTTGTGGA...GATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAATGTGCAGAGAGCGCTCCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp GACAGATGTCCCCAAATAAAGTCCCTGCGTGTGGAGAGCTGCATCCTCCAGGCAAACGTCAGAGGTACTTaGAGCAGAAATACTATCATC +
Preference number: 4 (lower is better)
Translates to: DRCPQIKSLRVESCILQANVRGT*SRNTII
Trigger: GATGATAGTATTTCTGCTGCAAGTACCTCTGACGTT...TGCCTGGAGGATGCAGCTCTCCACACGCAGGGACTTTATTTGGGGACATCTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp AGACCAAAGCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACATACAGTAAGCATGTaGTCATTGGAGTCATCAATA +
Preference number: 4 (lower is better)
Translates to: RPKPPYKGCKAHRRRKCPHTVSM*SLESSI
Trigger: TATTGATGACTCCAATGAGCACATGCTTACTGTATG...TGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGCTTTGGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp ACGGTTCCCAGCGCTGATGACATACCTGATGTGTTACTCCTGAGAAGGTCCTGGTTCTTGTTAGTGAGTTaGCACTCCAGGTCCAGAAAA +
Preference number: 4 (lower is better)
Translates to: TVPSADDIPDVLLLRRSWFLLVS*HSRSRK
Trigger: TTTTCTGGACCTGGAGTGGCAACTCACTAACAAGAA...CCAGGACCTTCTCAGGAGTAACACATCAGGTATGTCATCAGCGCTGGGAACCGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp AATAGTTATCTGACAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACGTCCACTCCAGCCTGTaGTCCACTGAGTTCCACATG +
Preference number: 4 (lower is better)
Translates to: NSYLTKLRKPDLPTYTTNVHSSL*STEFHM
Trigger: CATGTGGAACTCAGTGGAGCACAGGCTGGAGTGGAC...GTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTGTCAGATAACTATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp CTTGATTTCATCTCCACTGCTAGCTGGTGGACAGAGATGCCTGAAGCTGTGCGCCAGATCTCTTGTTTCTaGATCCAGAACAAACCACCT +
Preference number: 4 (lower is better)
Translates to: LDFISTASWWTEMPEAVRQISCF*IQNKPP
Trigger: AGGTGGTTTGTTCTGGATGCAGAAACAAGAGATCTG...GCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGGAGATGAAATCAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp CAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCCAGATCTCTTGTTTCTaGATCCAGAACAAACCACCT +
Preference number: 4 (lower is better)
Translates to: QSLESPTCPRTLLTHALPQISCF*IQNKPP
Trigger: AGGTGGTTTGTTCTGGATGCAGAAACAAGAGATCTG...GGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp TTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCAGACCAGAAAGAGATGAACTTTaGAGAAATCATCGGCCACTG +
Preference number: 4 (lower is better)
Translates to: LESPTCPRTLLTHALPRPERDEL*RNHRPL
Trigger: CAGTGGCCGATGATTTCTGCAAAGTTCATCTCTTTC...TGGTCTGGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp AGACCAAAGCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCAAATGAACATTGTAATTaGCCGACCTCGCATAAACAT +
Preference number: 4 (lower is better)
Translates to: RPKPPYKGCKAHRRRKCPNEHCN*PTSHKH
Trigger: ATGTTTATGCGAGGTCGGCCAATTACAATGTTCATT...TGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGCTTTGGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp GACAGATGTCCCCAAATAAAGTCCCTGCGTGTGGAGAGCTGCATCCTCCAGGCATGTATTTGCATCTGTTaGGTGGAATTCTACAGCCAA +
Preference number: 4 (lower is better)
Translates to: DRCPQIKSLRVESCILQACICIC*VEFYSQ
Trigger: TTGGCTGTAGAATTCCACCCAACAGATGCAAATACA...TGCCTGGAGGATGCAGCTCTCCACACGCAGGGACTTTATTTGGGGACATCTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp TTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCAGACCATATATGCTTATTGTCTaGGGACCAGTCAAGGTGTGT +
Preference number: 4 (lower is better)
Translates to: LESPTCPRTLLTHALPRPYMLIV*GPVKVC
Trigger: ACACACCTTGACTGGTCCCCAGACAATAAGCATATA...TGGTCTGGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp CTACCACCCAAGAGGATCATGATTATAAATCTCATTGGCCATGGCAACCCCAAACTGACGTTGGTCACATaGCTGCTGTGGGCACTGTAC +
Preference number: 4 (lower is better)
Translates to: LPPKRIMIINLIGHGNPKLTLVT*LLWALY
Trigger: GTACAGTGCCCACAGCAGCCATGTGACCAACGTCAG...TTTGGGGTTGCCATGGCCAATGAGATTTATAATCATGATCCTCTTGGGTGGTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR CAA 72 bp AATGCAATATCCCATGGAAAGGCAACACCATCGCACTaGGCAATGCTAACATTCCCCTTAAGCAAGCTCCCG +
Preference number: 4 (lower is better)
Translates to: NAISHGKATPSH*AMLTFPLSKLP
Trigger: CGGGAGCTTGCTTAAGGGGAATGTTAGCATTGCCAAGTGCGATGGTGTTGCCTTTCCATGGGATATTGCATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp TTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCAGACCAAATCTGATCGGTTCCTaGTTAGTTTGCAGCCATTTT +
Preference number: 4 (lower is better)
Translates to: LESPTCPRTLLTHALPRPNLIGS*LVCSHF
Trigger: AAAATGGCTGCAAACTAATCAGGAACCGATCAGATT...TGGTCTGGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp CTTGATTTCATCTCCACTGCTAGCTGGTGGACAGAGATGCCTGAAGCTGTGCGCAATCTGATCGGTTCCTaGTTAGTTTGCAGCCATTTT +
Preference number: 4 (lower is better)
Translates to: LDFISTASWWTEMPEAVRNLIGS*LVCSHF
Trigger: AAAATGGCTGCAAACTAATCAGGAACCGATCAGATT...GCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGGAGATGAAATCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp TGTAAGAAAATGCAATATCCCATGGAAAGGCAACACCATCGCACTTGGCAATGCCACTGGCGTCTGTTATaGCCTCGTTTTGAGGCACAG +
Preference number: 4 (lower is better)
Translates to: CKKMQYPMERQHHRTWQCHWRLL*PRFEAQ
Trigger: CTGTGCCTCAAAACGAGGTCATAACAGACGCCAGTG...GCATTGCCAAGTGCGATGGTGTTGCCTTTCCATGGGATATTGCATTTTCTTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp CGGAGCGCTCTCTGCACATTAGTAGTGTCTTTGGAACTACCACCCAAGAGGATCTTCTTGTTAGTGAGTTaGCACTCCAGGTCCAGAAAA +
Preference number: 4 (lower is better)
Translates to: RSALCTLVVSLELPPKRIFLLVS*HSRSRK
Trigger: TTTTCTGGACCTGGAGTGGCAACTCACTAACAAGAA...GATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAATGTGCAGAGAGCGCTCCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp AAGGCAACACCATCGCACTTGGCAATGCTAACATTCCCCTTAAGCAAGCTCCCGCAGATCTCTTGTTTCTaGATCCAGAACAAACCACCT +
Preference number: 4 (lower is better)
Translates to: KATPSHLAMLTFPLSKLPQISCF*IQNKPP
Trigger: AGGTGGTTTGTTCTGGATGCAGAAACAAGAGATCTG...CGGGAGCTTGCTTAAGGGGAATGTTAGCATTGCCAAGTGCGATGGTGTTGCCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp TTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCAGACCATGTATTTGCATCTGTTaGGTGGAATTCTACAGCCAA +
Preference number: 4 (lower is better)
Translates to: LESPTCPRTLLTHALPRPCICIC*VEFYSQ
Trigger: TTGGCTGTAGAATTCCACCCAACAGATGCAAATACA...TGGTCTGGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp TGTAAGAAAATGCAATATCCCATGGAAAGGCAACACCATCGCACTTGGCAATGCTGGGAGCCTTGGCTTTaGAGCAGGGGTACTGAAAGA +
Preference number: 4 (lower is better)
Translates to: CKKMQYPMERQHHRTWQCWEPWL*SRGTER
Trigger: TCTTTCAGTACCCCTGCTCCAAAGCCAAGGCTCCCA...GCATTGCCAAGTGCGATGGTGTTGCCTTTCCATGGGATATTGCATTTTCTTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp CTACCACCCAAGAGGATCATGATTATAAATCTCATTGGCCATGGCAACCCCAAACACTGTACTTGTGACTaGGAGCCTTGGCTTTGGAGC +
Preference number: 4 (lower is better)
Translates to: LPPKRIMIINLIGHGNPKHCTCD*EPWLWS
Trigger: GCTCCAAAGCCAAGGCTCCCAGTCACAAGTACAGTG...TTTGGGGTTGCCATGGCCAATGAGATTTATAATCATGATCCTCTTGGGTGGTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp TGTAAGAAAATGCAATATCCCATGGAAAGGCAACACCATCGCACTTGGCAATGCCACTGTACTTGTGACTaGGAGCCTTGGCTTTGGAGC +
Preference number: 4 (lower is better)
Translates to: CKKMQYPMERQHHRTWQCHCTCD*EPWLWS
Trigger: GCTCCAAAGCCAAGGCTCCCAGTCACAAGTACAGTG...GCATTGCCAAGTGCGATGGTGTTGCCTTTCCATGGGATATTGCATTTTCTTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp CAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCGATACAGAGCTGGTATaGTTCTGTTTTCTGCTTATA +
Preference number: 4 (lower is better)
Translates to: QSLESPTCPRTLLTHALPDTELV*FCFLLI
Trigger: TATAAGCAGAAAACAGAATCATACCAGCTCTGTATC...GGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp CCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATAGCACATGATACAGAGCTGGTATaGTTCTGTTTTCTGCTTATA +
Preference number: 4 (lower is better)
Translates to: PYKGCKAHRRRKCPQIAHDTELV*FCFLLI
Trigger: TATAAGCAGAAAACAGAATCATACCAGCTCTGTATC...ATGTGCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp CTACCACCCAAGAGGATCATGATTATAAATCTCATTGGCCATGGCAACCCCAAAACTGTACCGCTTGGATaGAAGTCTGCACAGTGTCCT +
Preference number: 4 (lower is better)
Translates to: LPPKRIMIINLIGHGNPKTVPLG*KSAQCP
Trigger: AGGACACTGTGCAGACTTTCATCCAAGCGGTACAGT...TTTGGGGTTGCCATGGCCAATGAGATTTATAATCATGATCCTCTTGGGTGGTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp AAGGCAACACCATCGCACTTGGCAATGCTAACATTCCCCTTAAGCAAGCTCCCGTCCATTCCCCAAGAATaGCAAACACTGAACGAATTT +
Preference number: 4 (lower is better)
Translates to: KATPSHLAMLTFPLSKLPSIPQE*QTLNEF
Trigger: AAATTCGTTCAGTGTTTGGCATTCTTGGGGAATGGA...CGGGAGCTTGCTTAAGGGGAATGTTAGCATTGCCAAGTGCGATGGTGTTGCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp TGTAAGAAAATGCAATATCCCATGGAAAGGCAACACCATCGCACTTGGCAATGCCAGACAGCTGCTCATTaGCATCCGTGTGGATTGACA +
Preference number: 4 (lower is better)
Translates to: CKKMQYPMERQHHRTWQCQTAAH*HPCGLT
Trigger: TGTCAATCCACACGGATGGCAATGAGCAGCTGTCTG...GCATTGCCAAGTGCGATGGTGTTGCCTTTCCATGGGATATTGCATTTTCTTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp AAGGCAACACCATCGCACTTGGCAATGCTAACATTCCCCTTAAGCAAGCTCCCGTTTGCATCTGTTGGGTaGAATTCTACAGCCAAAACA +
Preference number: 4 (lower is better)
Translates to: KATPSHLAMLTFPLSKLPFASVG*NSTAKT
Trigger: TGTTTTGGCTGTAGAATTCCACCCAACAGATGCAAA...CGGGAGCTTGCTTAAGGGGAATGTTAGCATTGCCAAGTGCGATGGTGTTGCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp CGGAGCGCTCTCTGCACATTAGTAGTGTCTTTGGAACTACCACCCAAGAGGATCTTTGCATCTGTTGGGTaGAATTCTACAGCCAAAACA +
Preference number: 4 (lower is better)
Translates to: RSALCTLVVSLELPPKRIFASVG*NSTAKT
Trigger: TGTTTTGGCTGTAGAATTCCACCCAACAGATGCAAA...GATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAATGTGCAGAGAGCGCTCCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp AAGGCAACACCATCGCACTTGGCAATGCTAACATTCCCCTTAAGCAAGCTCCCGTGTATTTGCATCTGTTaGGTGGAATTCTACAGCCAA +
Preference number: 4 (lower is better)
Translates to: KATPSHLAMLTFPLSKLPCICIC*VEFYSQ
Trigger: TTGGCTGTAGAATTCCACCCAACAGATGCAAATACA...CGGGAGCTTGCTTAAGGGGAATGTTAGCATTGCCAAGTGCGATGGTGTTGCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp AAACATAGGCAATGCACACTTGTCAATCACTGGAGTAGGAAACACATACTTAGGCTGACGTTGGTCACATaGCTGCTGTGGGCACTGTAC +
Preference number: 4 (lower is better)
Translates to: KHRQCTLVNHWSRKHILRLTLVT*LLWALY
Trigger: GTACAGTGCCCACAGCAGCCATGTGACCAACGTCAG...CCTAAGTATGTGTTTCCTACTCCAGTGATTGACAAGTGTGCATTGCCTATGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR CAA 72 bp TTGGTTTCCAGTATCTGCAGCACAAATGTGGATTTCTaGGACACACTCACCTGCCAGTCTCCTCCTGCTATT +
Preference number: 4 (lower is better)
Translates to: LVSSICSTNVDF*DTLTCQSPPAI
Trigger: AATAGCAGGAGGAGACTGGCAGGTGAGTGTGTCCAAGAAATCCACATTTGTGCTGCAGATACTGGAAACCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR CAA 72 bp GGAGAGCTGCATCCTCCAGGCACTGAGAGAAGCACGTaGAATTGTTGTTCATCTCCTAGTATCCATTTTGCA +
Preference number: 4 (lower is better)
Translates to: GELHPPGTERST*NCCSSPSIHFA
Trigger: TGCAAAATGGATACTAGGAGATGAACAACAATTCAACGTGCTTCTCTCAGTGCCTGGAGGATGCAGCTCTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp TGTAAGAAAATGCAATATCCCATGGAAAGGCAACACCATCGCACTTGGCAATGCCAAGCTTCCACTGAATaGTGCTCATATCCTTCCCAC +
Preference number: 4 (lower is better)
Translates to: CKKMQYPMERQHHRTWQCQASTE*CSYPSH
Trigger: GTGGGAAGGATATGAGCATCATTCAGTGGAAGCTTG...GCATTGCCAAGTGCGATGGTGTTGCCTTTCCATGGGATATTGCATTTTCTTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp TGCATGATAGAAATGGCTCATCTTCACGTGAAACACTTGGGTTCATTTTCATTCTATTTGGAGAGGCTGTaGAGAGGGCTGGGGAGAAGG +
Preference number: 4 (lower is better)
Translates to: CMIEMAHLHVKHLGSFSFYLERL*RGLGRR
Trigger: CCTTCTCCCCAGCCCTCTTCACAGCCTCTCCAAATA...GAATGAAAATGAACCCAAGTGTTTCACGTGAAGATGAGCCATTTCTATCATGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096766.12
CDS-3UTR GCA 90 bp AAACATAGGCAATGCACACTTGTCAATCACTGGAGTAGGAAACACATACTTAGGTTCTGCCCTTCCCTCTaGAACTGCTCTAATGGTGCC +
Preference number: 4 (lower is better)
Translates to: KHRQCTLVNHWSRKHILRFCPSL*NCSNGA
Trigger: GGCACCATTAGAGCAGTTGCAGAGGGAAGGGCAGAA...CCTAAGTATGTGTTTCCTACTCCAGTGATTGACAAGTGTGCATTGCCTATGTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp TGCATGATAGAAATGGCTCATCTTCACGTGAAACACTTGGGTTCATTTTCATTCGTCCACTCCAGCCTGTaGTCCACTGAGTTCCACATG +
Preference number: 4 (lower is better)
Translates to: CMIEMAHLHVKHLGSFSFVHSSL*STEFHM
Trigger: CATGTGGAACTCAGTGGAGCACAGGCTGGAGTGGAC...GAATGAAAATGAACCCAAGTGTTTCACGTGAAGATGAGCCATTTCTATCATGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp TGTAAGAAAATGCAATATCCCATGGAAAGGCAACACCATCGCACTTGGCAATGCTACCACTGTACCGCTTaGATGAAAGTCTGCACAGTG +
Preference number: 4 (lower is better)
Translates to: CKKMQYPMERQHHRTWQCYHCTA*MKVCTV
Trigger: CACTGTGCAGACTTTCATCCAAGCGGTACAGTGGTA...GCATTGCCAAGTGCGATGGTGTTGCCTTTCCATGGGATATTGCATTTTCTTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR CAA 72 bp AGAGGCCGGAGCGCTCTCTGCACATTAGTAGTGTCTTaGGAACTACCACCCAAGAGGATCATGATTATAAAT +
Preference number: 4 (lower is better)
Translates to: RGRSALCTLVVS*ELPPKRIMIIN
Trigger: ATTTATAATCATGATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAATGTGCAGAGAGCGCTCCGGCCTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp TCCAATGGCTGCAGCTGCAGTTTGGTTTCCAGTATCTGCAGCACAAATGTGGATAACGTCAGAGGTACTTaGAGCAGAAATACTATCATC +
Preference number: 4 (lower is better)
Translates to: SNGCSCSLVSSICSTNVDNVRGT*SRNTII
Trigger: GATGATAGTATTTCTGCTGCAAGTACCTCTGACGTT...ATCCACATTTGTGCTGCAGATACTGGAAACCAAACTGCAGCTGCAGCCATTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp AAACATAGGCAATGCACACTTGTCAATCACTGGAGTAGGAAACACATACTTAGGCCTTCCCTCTGCAACTaGTCTAATGGTGCCATACTG +
Preference number: 4 (lower is better)
Translates to: KHRQCTLVNHWSRKHILRPSLCN*SNGAIL
Trigger: CAGTATGGCACCATTAGAGCAGTTGCAGAGGGAAGG...CCTAAGTATGTGTTTCCTACTCCAGTGATTGACAAGTGTGCATTGCCTATGTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp TGCATGATAGAAATGGCTCATCTTCACGTGAAACACTTGGGTTCATTTTCATTCAACCACCTGCCTGAGTaGGTTCCAATGGCTACCACT +
Preference number: 4 (lower is better)
Translates to: CMIEMAHLHVKHLGSFSFNHLPE*VPMATT
Trigger: AGTGGTAGCCATTGGAACGCACTCAGGCAGGTGGTT...GAATGAAAATGAACCCAAGTGTTTCACGTGAAGATGAGCCATTTCTATCATGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp AATAGTTATCTGACAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACCAGTTTGAGCTTCTCTaGAGGCAGTTCTGTTCTGAT +
Preference number: 4 (lower is better)
Translates to: NSYLTKLRKPDLPTYTTNQFELL*RQFCSD
Trigger: ATCAGAACAGAACTGCCTCCAGAGAAGCTCAAACTG...GTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTGTCAGATAACTATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp TGCATGATAGAAATGGCTCATCTTCACGTGAAACACTTGGGTTCATTTTCATTCTGGGAGCCTTGGCTTTaGAGCAGGGGTACTGAAAGA +
Preference number: 4 (lower is better)
Translates to: CMIEMAHLHVKHLGSFSFWEPWL*SRGTER
Trigger: TCTTTCAGTACCCCTGCTCCAAAGCCAAGGCTCCCA...GAATGAAAATGAACCCAAGTGTTTCACGTGAAGATGAGCCATTTCTATCATGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp TGCATGATAGAAATGGCTCATCTTCACGTGAAACACTTGGGTTCATTTTCATTCCACTGTACTTGTGACTaGGAGCCTTGGCTTTGGAGC +
Preference number: 4 (lower is better)
Translates to: CMIEMAHLHVKHLGSFSFHCTCD*EPWLWS
Trigger: GCTCCAAAGCCAAGGCTCCCAGTCACAAGTACAGTG...GAATGAAAATGAACCCAAGTGTTTCACGTGAAGATGAGCCATTTCTATCATGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp AATAGTTATCTGACAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACGAGGCAGTTCTGTTCTaGTGTCATCATAGTTGTCAA +
Preference number: 4 (lower is better)
Translates to: NSYLTKLRKPDLPTYTTNEAVLF*CHHSCQ
Trigger: TTGACAACTATGATGACATCAGAACAGAACTGCCTC...GTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTGTCAGATAACTATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp AATAGTTATCTGACAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACAACACACTGCCATCATaGGCTTTGATTTGTCTGTTG +
Preference number: 4 (lower is better)
Translates to: NSYLTKLRKPDLPTYTTNNTLPS*ALICLL
Trigger: CAACAGACAAATCAAAGCTCATGATGGCAGTGTGTT...GTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTGTCAGATAACTATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp AAACATAGGCAATGCACACTTGTCAATCACTGGAGTAGGAAACACATACTTAGGCAAGCTTCCACTGAATaGTGCTCATATCCTTCCCAC +
Preference number: 4 (lower is better)
Translates to: KHRQCTLVNHWSRKHILRQASTE*CSYPSH
Trigger: GTGGGAAGGATATGAGCATCATTCAGTGGAAGCTTG...CCTAAGTATGTGTTTCCTACTCCAGTGATTGACAAGTGTGCATTGCCTATGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp CTACCACCCAAGAGGATCATGATTATAAATCTCATTGGCCATGGCAACCCCAAATTCTTGTTAGTGAGTTaGCACTCCAGGTCCAGAAAA +
Preference number: 4 (lower is better)
Translates to: LPPKRIMIINLIGHGNPKFLLVS*HSRSRK
Trigger: TTTTCTGGACCTGGAGTGGCAACTCACTAACAAGAA...TTTGGGGTTGCCATGGCCAATGAGATTTATAATCATGATCCTCTTGGGTGGTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp CTACCACCCAAGAGGATCATGATTATAAATCTCATTGGCCATGGCAACCCCAAATATATGCTTATTGTCTaGGGACCAGTCAAGGTGTGT +
Preference number: 4 (lower is better)
Translates to: LPPKRIMIINLIGHGNPKYMLIV*GPVKVC
Trigger: ACACACCTTGACTGGTCCCCAGACAATAAGCATATA...TTTGGGGTTGCCATGGCCAATGAGATTTATAATCATGATCCTCTTGGGTGGTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp TGTAAGAAAATGCAATATCCCATGGAAAGGCAACACCATCGCACTTGGCAATGCAACGTCAGAGGTACTTaGAGCAGAAATACTATCATC +
Preference number: 4 (lower is better)
Translates to: CKKMQYPMERQHHRTWQCNVRGT*SRNTII
Trigger: GATGATAGTATTTCTGCTGCAAGTACCTCTGACGTT...GCATTGCCAAGTGCGATGGTGTTGCCTTTCCATGGGATATTGCATTTTCTTACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp TCCAATGGCTGCAGCTGCAGTTTGGTTTCCAGTATCTGCAGCACAAATGTGGATTATGATTCTGTTTTCTaGTTATACCACTTCCATTGG +
Preference number: 4 (lower is better)
Translates to: SNGCSCSLVSSICSTNVDYDSVF*LYHFHW
Trigger: CCAATGGAAGTGGTATAAGCAGAAAACAGAATCATA...ATCCACATTTGTGCTGCAGATACTGGAAACCAAACTGCAGCTGCAGCCATTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR CAA 72 bp CTGTTAAAGGCATGTGGTTTGTTTTCTTCCATTCCCTaGAATGCCCAACATTACAGAATGTTTAGGCCAGTG +
Preference number: 4 (lower is better)
Translates to: LLKACGLFSSIP*NAQHYRMFRPV
Trigger: CACTGGCCTAAACATTCTGTAATGTTGGGCATTCAAGGGAATGGAAGAAAACAAACCACATGCCTTTAACAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp TGTAAGAAAATGCAATATCCCATGGAAAGGCAACACCATCGCACTTGGCAATGCGATACAGAGCTGGTATaGTTCTGTTTTCTGCTTATA +
Preference number: 4 (lower is better)
Translates to: CKKMQYPMERQHHRTWQCDTELV*FCFLLI
Trigger: TATAAGCAGAAAACAGAATCATACCAGCTCTGTATC...GCATTGCCAAGTGCGATGGTGTTGCCTTTCCATGGGATATTGCATTTTCTTACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp AATAGTTATCTGACAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACCATACAGTAAGCATGTaGTCATTGGAGTCATCAATA +
Preference number: 4 (lower is better)
Translates to: NSYLTKLRKPDLPTYTTNHTVSM*SLESSI
Trigger: TATTGATGACTCCAATGAGCACATGCTTACTGTATG...GTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTGTCAGATAACTATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp TGTAAGAAAATGCAATATCCCATGGAAAGGCAACACCATCGCACTTGGCAATGCAATGAACATTGTAATTaGCCGACCTCGCATAAACAT +
Preference number: 4 (lower is better)
Translates to: CKKMQYPMERQHHRTWQCNEHCN*PTSHKH
Trigger: ATGTTTATGCGAGGTCGGCCAATTACAATGTTCATT...GCATTGCCAAGTGCGATGGTGTTGCCTTTCCATGGGATATTGCATTTTCTTACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp AATAGTTATCTGACAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACAGAACTCTTGCTCTCTaGAGTTTGTCTGTTTATTTG +
Preference number: 4 (lower is better)
Translates to: NSYLTKLRKPDLPTYTTNRTLAL*SLSVYL
Trigger: CAAATAAACAGACAAACTCCAGAGAGCAAGAGTTCT...GTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTGTCAGATAACTATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096766.12
CDS-3UTR GCA 90 bp AATAGTTATCTGACAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACTATGATTCTGTTTTCTaGTTATACCACTTCCATTGG +
Preference number: 4 (lower is better)
Translates to: NSYLTKLRKPDLPTYTTNYDSVF*LYHFHW
Trigger: CCAATGGAAGTGGTATAAGCAGAAAACAGAATCATA...GTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTGTCAGATAACTATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp AAACATAGGCAATGCACACTTGTCAATCACTGGAGTAGGAAACACATACTTAGGTCCATTCCCCAAGAATaGCAAACACTGAACGAATTT +
Preference number: 4 (lower is better)
Translates to: KHRQCTLVNHWSRKHILRSIPQE*QTLNEF
Trigger: AAATTCGTTCAGTGTTTGGCATTCTTGGGGAATGGA...CCTAAGTATGTGTTTCCTACTCCAGTGATTGACAAGTGTGCATTGCCTATGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp TGCATGATAGAAATGGCTCATCTTCACGTGAAACACTTGGGTTCATTTTCATTCGAAAGAGATGAACTTTaGAGAAATCATCGGCCACTG +
Preference number: 4 (lower is better)
Translates to: CMIEMAHLHVKHLGSFSFERDEL*RNHRPL
Trigger: CAGTGGCCGATGATTTCTGCAAAGTTCATCTCTTTC...GAATGAAAATGAACCCAAGTGTTTCACGTGAAGATGAGCCATTTCTATCATGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp AAACATAGGCAATGCACACTTGTCAATCACTGGAGTAGGAAACACATACTTAGGTTTGCATCTGTTGGGTaGAATTCTACAGCCAAAACA +
Preference number: 4 (lower is better)
Translates to: KHRQCTLVNHWSRKHILRFASVG*NSTAKT
Trigger: TGTTTTGGCTGTAGAATTCCACCCAACAGATGCAAA...CCTAAGTATGTGTTTCCTACTCCAGTGATTGACAAGTGTGCATTGCCTATGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CCA 90 bp TTAGTAGTGTCTTTGGAACTACCACCCAAGAGGATCATGATTATAAATCTCATTTACCACTGTACCGCTTaGATGAAAGTCTGCACAGTG +
Preference number: 4 (lower is better)
Translates to: LVVSLELPPKRIMIINLIYHCTA*MKVCTV
Trigger: CACTGTGCAGACTTTCATCCAAGCGGTACAGTGGTA...AATGAGATTTATAATCATGATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
3UTR CAA 72 bp GTCGTCATTACAGTTCATCTGTTAAAGGCATGTGGTTaGTTTTCTTCCATTCCCTTGAATGCCCAACATTAC +
Preference number: 4 (lower is better)
Translates to: VVITVHLLKACG*FSSIPLNAQHY
Trigger: GTAATGTTGGGCATTCAAGGGAATGGAAGAAAACAAACCACATGCCTTTAACAGATGAACTGTAATGACGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp AAACATAGGCAATGCACACTTGTCAATCACTGGAGTAGGAAACACATACTTAGGCATACAGTAAGCATGTaGTCATTGGAGTCATCAATA +
Preference number: 4 (lower is better)
Translates to: KHRQCTLVNHWSRKHILRHTVSM*SLESSI
Trigger: TATTGATGACTCCAATGAGCACATGCTTACTGTATG...CCTAAGTATGTGTTTCCTACTCCAGTGATTGACAAGTGTGCATTGCCTATGTTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp TGCATGATAGAAATGGCTCATCTTCACGTGAAACACTTGGGTTCATTTTCATTCTCCATTCCCCAAGAATaGCAAACACTGAACGAATTT +
Preference number: 4 (lower is better)
Translates to: CMIEMAHLHVKHLGSFSFSIPQE*QTLNEF
Trigger: AAATTCGTTCAGTGTTTGGCATTCTTGGGGAATGGA...GAATGAAAATGAACCCAAGTGTTTCACGTGAAGATGAGCCATTTCTATCATGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp TTAGTAGTGTCTTTGGAACTACCACCCAAGAGGATCATGATTATAAATCTCATTTTCACTGAGGCTACATaGTCTTCAGAGATTGCAAGA +
Preference number: 4 (lower is better)
Translates to: LVVSLELPPKRIMIINLIFTEAT*SSEIAR
Trigger: TCTTGCAATCTCTGAAGATCATGTAGCCTCAGTGAA...AATGAGATTTATAATCATGATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp AAACATAGGCAATGCACACTTGTCAATCACTGGAGTAGGAAACACATACTTAGGTGCACTTTCCATATCTaGTGTATTTTCTTCCGTTTT +
Preference number: 4 (lower is better)
Translates to: KHRQCTLVNHWSRKHILRCTFHI*CIFFRF
Trigger: AAAACGGAAGAAAATACAGCAGATATGGAAAGTGCA...CCTAAGTATGTGTTTCCTACTCCAGTGATTGACAAGTGTGCATTGCCTATGTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp TTAGTAGTGTCTTTGGAACTACCACCCAAGAGGATCATGATTATAAATCTCATTGAAAGAGATGAACTTTaGAGAAATCATCGGCCACTG +
Preference number: 4 (lower is better)
Translates to: LVVSLELPPKRIMIINLIERDEL*RNHRPL
Trigger: CAGTGGCCGATGATTTCTGCAAAGTTCATCTCTTTC...AATGAGATTTATAATCATGATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp TTAGTAGTGTCTTTGGAACTACCACCCAAGAGGATCATGATTATAAATCTCATTAATCTGATCGGTTCCTaGTTAGTTTGCAGCCATTTT +
Preference number: 4 (lower is better)
Translates to: LVVSLELPPKRIMIINLINLIGS*LVCSHF
Trigger: AAAATGGCTGCAAACTAATCAGGAACCGATCAGATT...AATGAGATTTATAATCATGATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp TTAGTAGTGTCTTTGGAACTACCACCCAAGAGGATCATGATTATAAATCTCATTATGATCTTCAGAGATTaGAAGACGCCTCAAAACATC +
Preference number: 4 (lower is better)
Translates to: LVVSLELPPKRIMIINLIMIFRD*KTPQNI
Trigger: GATGTTTTGAGGCGTCTTGCAATCTCTGAAGATCAT...AATGAGATTTATAATCATGATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp TGCATGATAGAAATGGCTCATCTTCACGTGAAACACTTGGGTTCATTTTCATTCTATGATTCTGTTTTCTaGTTATACCACTTCCATTGG +
Preference number: 4 (lower is better)
Translates to: CMIEMAHLHVKHLGSFSFYDSVF*LYHFHW
Trigger: CCAATGGAAGTGGTATAAGCAGAAAACAGAATCATA...GAATGAAAATGAACCCAAGTGTTTCACGTGAAGATGAGCCATTTCTATCATGCA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000234460.2
CDS-3UTR TCA 90 bp TTAGTAGTGTCTTTGGAACTACCACCCAAGAGGATCATGATTATAAATCTCATTGATACAGAGCTGGTATaGTTCTGTTTTCTGCTTATA +
Preference number: 4 (lower is better)
Translates to: LVVSLELPPKRIMIINLIDTELV*FCFLLI
Trigger: TATAAGCAGAAAACAGAATCATACCAGCTCTGTATC...AATGAGATTTATAATCATGATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR GCA 90 bp TTAGTAGTGTCTTTGGAACTACCACCCAAGAGGATCATGATTATAAATCTCATTTGCACTTTCCATATCTaGTGTATTTTCTTCCGTTTT +
Preference number: 4 (lower is better)
Translates to: LVVSLELPPKRIMIINLICTFHI*CIFFRF
Trigger: AAAACGGAAGAAAATACAGCAGATATGGAAAGTGCA...AATGAGATTTATAATCATGATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAA
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS CCA 90 bp TCACCACACCAAGGTCTTCGCTACCCCACTCGCTCTGCTCCTCGCTaGGCTCTGCGATCTGCTCCAGGCTGTTCTCCACTAGTGTGGGGG +
Preference number: 5 (lower is better)
Translates to: SPHQGLRYPTRSAPR*ALRSAPGCSPLVWG
Trigger: CCCCCACACTAGTGGAGAACAGCCTGGAGCAGATCGCAGAGCCCAGCGAGGAGCAGAGCGAGTGGGGTAGCGAAGACCTTGGTGTGGTGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS CCA 90 bp CCTCGCTGGGCTCTGCGATCTGCTCCAGGCTGTTCTCCACTAGTGTaGGGGAGCTGCCCATCCTGCTTTCCTCTTCAGCCGTCCCAGTTA +
Preference number: 5 (lower is better)
Translates to: PRWALRSAPGCSPLV*GSCPSCFPLQPSQL
Trigger: TAACTGGGACGGCTGAAGAGGAAAGCAGGATGGGCAGCTCCCCCACACTAGTGGAGAACAGCCTGGAGCAGATCGCAGAGCCCAGCGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS GCA 90 bp GCTCTGCGATCTGCTCCAGGCTGTTCTCCACTAGTGTGGGGGAGCTaGCCATCCTGCTTTCCTCTTCAGCCGTCCCAGTTAACGGTAGAG +
Preference number: 5 (lower is better)
Translates to: ALRSAPGCSPLVWGS*PSCFPLQPSQLTVE
Trigger: CTCTACCGTTAACTGGGACGGCTGAAGAGGAAAGCAGGATGGGCAGCTCCCCCACACTAGTGGAGAACAGCCTGGAGCAGATCGCAGAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS-3UTR CAA 90 bp CCACTGCTAGCTGGTGGACAGAGATGCCTGAAGCTGTGCGCTCTGACCCTGGGTGAAGAGGCAGGGGTTTaGGTCACACTGGCGTCTGTT +
Preference number: 5 (lower is better)
Translates to: PLLAGGQRCLKLCALTLGEEAGV*VTLASV
Trigger: AACAGACGCCAGTGTGACCAAAACCCCTGCCTCTTC...ACCCAGGGTCAGAGCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp GCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATAGCCCTCAGGCAGCTCAGTaGCTCCCTGTGTCTCACTTA +
Preference number: 5 (lower is better)
Translates to: AAIQGLQGSQEEEMPTDSPQAAQ*LPVSHL
Trigger: TAAGTGAGACACAGGGAGCAACTGAGCTGCCTGAGG...GCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS TCA 90 bp CACCTGCCTGAGTGCGTTCCAATGGCTACCACTGTACCGCTTGGATaGAAGTCTGCACAGTGTCCTGGTTCGTCCACAAGCCTGGTCCAC +
Preference number: 5 (lower is better)
Translates to: HLPECVPMATTVPLG*KSAQCPGSSTSLVH
Trigger: GTGGACCAGGCTTGTGGACGAACCAGGACACTGTGCAGACTTTCATCCAAGCGGTACAGTGGTAGCCATTGGAACGCACTCAGGCAGGTG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS-3UTR CAA 90 bp CCACTGCTAGCTGGTGGACAGAGATGCCTGAAGCTGTGCGCTCTGACCCTGGGTAGAGGCCTTCCATCTTaGTCTACTCCGGCTATCTGT +
Preference number: 5 (lower is better)
Translates to: PLLAGGQRCLKLCALTLGRGLPS*STPAIC
Trigger: ACAGATAGCCGGAGTAGACAAAGATGGAAGGCCTCT...ACCCAGGGTCAGAGCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS GCA 90 bp ATCATCGGCCACTGCGATCACTCTTCTGTTGTGGGATCGAACCAGTaGGTTGATGTCTGTTCCATCGGACCCTTCCGGCCACACCCCAAA +
Preference number: 5 (lower is better)
Translates to: IIGHCDHSSVVGSNQ*VDVCSIGPFRPHPK
Trigger: TTTGGGGTGTGGCCGGAAGGGTCCGATGGAACAGACATCAACGCACTGGTTCGATCCCACAACAGAAGAGTGATCGCAGTGGCCGATGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS-3UTR CAA 90 bp GCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATAGCTATACCCACTCCAGTTaGAGCTTCTCTGGAGGCAGT +
Preference number: 5 (lower is better)
Translates to: AAIQGLQGSQEEEMPTDSYTHSS*SFSGGS
Trigger: ACTGCCTCCAGAGAAGCTCAAACTGGAGTGGGTATA...GCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp GACAGATGTCCCCAAATAAAGTCCCTGCGTGTGGAGAGCTGCATCCTCCAGGCAGAAGAGGCAGGGGTTTaGGTCACACTGGCGTCTGTT +
Preference number: 5 (lower is better)
Translates to: DRCPQIKSLRVESCILQAEEAGV*VTLASV
Trigger: AACAGACGCCAGTGTGACCAAAACCCCTGCCTCTTC...TGCCTGGAGGATGCAGCTCTCCACACGCAGGGACTTTATTTGGGGACATCTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp AGACCAAAGCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCAATGGGAGCAGAACTCTaGCTCTCTGGAGTTTGTCTG +
Preference number: 5 (lower is better)
Translates to: RPKPPYKGCKAHRRRKCPMGAEL*LSGVCL
Trigger: CAGACAAACTCCAGAGAGCAAGAGTTCTGCTCCCAT...TGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGCTTTGGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096766.12
CDS TCA 90 bp TCCAGCCTGTGCTCCACTGAGTTCCACATGCACACCTGCCTGTCCTaGGCACACGTCAAGAGCAAATCTTTGAAGGGATGTGTTGCAAGG +
Preference number: 5 (lower is better)
Translates to: SSLCSTEFHMHTCLS*AHVKSKSLKGCVAR
Trigger: CCTTGCAACACATCCCTTCAAAGATTTGCTCTTGACGTGTGCTCAGGACAGGCAGGTGTGCATGTGGAACTCAGTGGAGCACAGGCTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS-3UTR CAA 90 bp CACAGGAGGAGGAAATGCCCACAGATAGCACATCCGCAAGGGGTGCGTGCAGCCAAATTCCCTGTTTTCTaGTTAGTGAGTTGCCACTCC +
Preference number: 5 (lower is better)
Translates to: HRRRKCPQIAHPQGVRAAKFPVF*LVSCHS
Trigger: GGAGTGGCAACTCACTAACAAGAAAACAGGGAATTT...GGCTGCACGCACCCCTTGCGGATGTGCTATCTGTGGGCATTTCCTCCTCCTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp CGGAGCGCTCTCTGCACATTAGTAGTGTCTTTGGAACTACCACCCAAGAGGATCCCTCAGGCAGCTCAGTaGCTCCCTGTGTCTCACTTA +
Preference number: 5 (lower is better)
Translates to: RSALCTLVVSLELPPKRIPQAAQ*LPVSHL
Trigger: TAAGTGAGACACAGGGAGCAACTGAGCTGCCTGAGG...GATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAATGTGCAGAGAGCGCTCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp AAGGCAACACCATCGCACTTGGCAATGCTAACATTCCCCTTAAGCAAGCTCCCGCCTCAGGCAGCTCAGTaGCTCCCTGTGTCTCACTTA +
Preference number: 5 (lower is better)
Translates to: KATPSHLAMLTFPLSKLPPQAAQ*LPVSHL
Trigger: TAAGTGAGACACAGGGAGCAACTGAGCTGCCTGAGG...CGGGAGCTTGCTTAAGGGGAATGTTAGCATTGCCAAGTGCGATGGTGTTGCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp CCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATAGCACATTTCTCGAAGGCTTGGTaGGCCTTTACTTGGCATGGA +
Preference number: 5 (lower is better)
Translates to: PYKGCKAHRRRKCPQIAHFSKAW*AFTWHG
Trigger: TCCATGCCAAGTAAAGGCCAACCAAGCCTTCGAGAA...ATGTGCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp ACGGTTCCCAGCGCTGATGACATACCTGATGTGTTACTCCTGAGAAGGTCCTGGTATACCCACTCCAGTTaGAGCTTCTCTGGAGGCAGT +
Preference number: 5 (lower is better)
Translates to: TVPSADDIPDVLLLRRSWYTHSS*SFSGGS
Trigger: ACTGCCTCCAGAGAAGCTCAAACTGGAGTGGGTATA...CCAGGACCTTCTCAGGAGTAACACATCAGGTATGTCATCAGCGCTGGGAACCGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp ACGGTTCCCAGCGCTGATGACATACCTGATGTGTTACTCCTGAGAAGGTCCTGGAGAGGCCTTCCATCTTaGTCTACTCCGGCTATCTGT +
Preference number: 5 (lower is better)
Translates to: TVPSADDIPDVLLLRRSWRGLPS*STPAIC
Trigger: ACAGATAGCCGGAGTAGACAAAGATGGAAGGCCTCT...CCAGGACCTTCTCAGGAGTAACACATCAGGTATGTCATCAGCGCTGGGAACCGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp GCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATAGCGTAAGCATGTGCTCATaGGAGTCATCAATAACGCAT +
Preference number: 5 (lower is better)
Translates to: AAIQGLQGSQEEEMPTDSVSMCS*ESSITH
Trigger: ATGCGTTATTGATGACTCCAATGAGCACATGCTTAC...GCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS GCA 90 bp TGGGAGCCTTGGCTTTGGAGCAGGGGTACTGAAAGAGATGAACTTTaGAGAAATCATCGGCCACTGCGATCACTCTTCTGTTGTGGGATC +
Preference number: 5 (lower is better)
Translates to: WEPWLWSRGTERDEL*RNHRPLRSLFCCGI
Trigger: GATCCCACAACAGAAGAGTGATCGCAGTGGCCGATGATTTCTGCAAAGTTCATCTCTTTCAGTACCCCTGCTCCAAAGCCAAGGCTCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS-3UTR CAA 90 bp CACAGGAGGAGGAAATGCCCACAGATAGCACATCCGCAAGGGGTGCGTGCAGCCCTTATACCACTTCCATaGGTTATACAGGACATAGAA +
Preference number: 5 (lower is better)
Translates to: HRRRKCPQIAHPQGVRAALIPLP*VIQDIE
Trigger: TTCTATGTCCTGTATAACCAATGGAAGTGGTATAAG...GGCTGCACGCACCCCTTGCGGATGTGCTATCTGTGGGCATTTCCTCCTCCTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp CCACTGCTAGCTGGTGGACAGAGATGCCTGAAGCTGTGCGCTCTGACCCTGGGTAAAGAGTTTCTTTTCTaGCTATTGATACAGAGCTGG +
Preference number: 5 (lower is better)
Translates to: PLLAGGQRCLKLCALTLGKEFLF*LLIQSW
Trigger: CCAGCTCTGTATCAATAGCAAGAAAAGAAACTCTTT...ACCCAGGGTCAGAGCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp AAGGCAACACCATCGCACTTGGCAATGCTAACATTCCCCTTAAGCAAGCTCCCGTATACCCACTCCAGTTaGAGCTTCTCTGGAGGCAGT +
Preference number: 5 (lower is better)
Translates to: KATPSHLAMLTFPLSKLPYTHSS*SFSGGS
Trigger: ACTGCCTCCAGAGAAGCTCAAACTGGAGTGGGTATA...CGGGAGCTTGCTTAAGGGGAATGTTAGCATTGCCAAGTGCGATGGTGTTGCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp CCACTGCTAGCTGGTGGACAGAGATGCCTGAAGCTGTGCGCTCTGACCCTGGGTCCAAAACAACTTCGTTaGTTGTCTTTATTTCTGCGA +
Preference number: 5 (lower is better)
Translates to: PLLAGGQRCLKLCALTLGPKQLR*LSLFLR
Trigger: TCGCAGAAATAAAGACAACAAACGAAGTTGTTTTGG...ACCCAGGGTCAGAGCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp TGCACTGCCCAGACCAAAGCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGCCAAAACAACTTCGTTaGTTGTCTTTATTTCTGCGA +
Preference number: 5 (lower is better)
Translates to: CTAQTKAAIQGLQGSQEEPKQLR*LSLFLR
Trigger: TCGCAGAAATAAAGACAACAAACGAAGTTGTTTTGG...CTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGCTTTGGTCTGGGCAGTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp ACGGTTCCCAGCGCTGATGACATACCTGATGTGTTACTCCTGAGAAGGTCCTGGTGCCATCCGTGTGGATaGACACCAGATCTCTTGTTT +
Preference number: 5 (lower is better)
Translates to: TVPSADDIPDVLLLRRSWCHPCG*TPDLLF
Trigger: AAACAAGAGATCTGGTGTCAATCCACACGGATGGCA...CCAGGACCTTCTCAGGAGTAACACATCAGGTATGTCATCAGCGCTGGGAACCGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp CAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCTGCCATCCGTGTGGATaGACACCAGATCTCTTGTTT +
Preference number: 5 (lower is better)
Translates to: QSLESPTCPRTLLTHALPCHPCG*TPDLLF
Trigger: AAACAAGAGATCTGGTGTCAATCCACACGGATGGCA...GGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp CAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCGCACACAGGTATATGTaGTCCAATCGATGTCCTTGC +
Preference number: 5 (lower is better)
Translates to: QSLESPTCPRTLLTHALPAHRYM*SNRCPC
Trigger: GCAAGGACATCGATTGGACAACATATACCTGTGTGC...GGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp AGACCAAAGCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCATATCCTTCCCACCAGTaGAAATTAGGTGACTGTCAT +
Preference number: 5 (lower is better)
Translates to: RPKPPYKGCKAHRRRKCPYPSHQ*KLGDCH
Trigger: ATGACAGTCACCTAATTTCAACTGGTGGGAAGGATA...TGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGCTTTGGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp GACAGATGTCCCCAAATAAAGTCCCTGCGTGTGGAGAGCTGCATCCTCCAGGCAGTTGCAATTCTAATCTaGTCAGGATGTACAGCAAGG +
Preference number: 5 (lower is better)
Translates to: DRCPQIKSLRVESCILQAVAILI*SGCTAR
Trigger: CCTTGCTGTACATCCTGACAAGATTAGAATTGCAAC...TGCCTGGAGGATGCAGCTCTCCACACGCAGGGACTTTATTTGGGGACATCTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp GACAGATGTCCCCAAATAAAGTCCCTGCGTGTGGAGAGCTGCATCCTCCAGGCAGTAAGCATGTGCTCATaGGAGTCATCAATAACGCAT +
Preference number: 5 (lower is better)
Translates to: DRCPQIKSLRVESCILQAVSMCS*ESSITH
Trigger: ATGCGTTATTGATGACTCCAATGAGCACATGCTTAC...TGCCTGGAGGATGCAGCTCTCCACACGCAGGGACTTTATTTGGGGACATCTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp GCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATAGCATCATGAGCTTTGATTaGTCTGTTGATCTGATACAC +
Preference number: 5 (lower is better)
Translates to: AAIQGLQGSQEEEMPTDSIMSFD*SVDLIH
Trigger: GTGTATCAGATCAACAGACAAATCAAAGCTCATGAT...GCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp AAGGCAACACCATCGCACTTGGCAATGCTAACATTCCCCTTAAGCAAGCTCCCGTGCCATCCGTGTGGATaGACACCAGATCTCTTGTTT +
Preference number: 5 (lower is better)
Translates to: KATPSHLAMLTFPLSKLPCHPCG*TPDLLF
Trigger: AAACAAGAGATCTGGTGTCAATCCACACGGATGGCA...CGGGAGCTTGCTTAAGGGGAATGTTAGCATTGCCAAGTGCGATGGTGTTGCCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp CAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCGACATTATATGCTTATaGTCTGGGGACCAGTCAAGG +
Preference number: 5 (lower is better)
Translates to: QSLESPTCPRTLLTHALPDIICL*SGDQSR
Trigger: CCTTGACTGGTCCCCAGACAATAAGCATATAATGTC...GGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp CGGAGCGCTCTCTGCACATTAGTAGTGTCTTTGGAACTACCACCCAAGAGGATCGCACACAGGTATATGTaGTCCAATCGATGTCCTTGC +
Preference number: 5 (lower is better)
Translates to: RSALCTLVVSLELPPKRIAHRYM*SNRCPC
Trigger: GCAAGGACATCGATTGGACAACATATACCTGTGTGC...GATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAATGTGCAGAGAGCGCTCCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp GACAGATGTCCCCAAATAAAGTCCCTGCGTGTGGAGAGCTGCATCCTCCAGGCATATCCTTCCCACCAGTaGAAATTAGGTGACTGTCAT +
Preference number: 5 (lower is better)
Translates to: DRCPQIKSLRVESCILQAYPSHQ*KLGDCH
Trigger: ATGACAGTCACCTAATTTCAACTGGTGGGAAGGATA...TGCCTGGAGGATGCAGCTCTCCACACGCAGGGACTTTATTTGGGGACATCTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS GCA 90 bp TCCAGGCATCCTACTCCACGCTCAAAAGTTCCAAGTCCAATAACATaGAGTGTGGTAAGACTTACTGAATCCCACACCCTGACATGGGGT +
Preference number: 5 (lower is better)
Translates to: SRHPTPRSKVPSPIT*SVVRLTESHTLTWG
Trigger: ACCCCATGTCAGGGTGTGGGATTCAGTAAGTCTTACCACACTGCATGTTATTGGACTTGGAACTTTTGAGCGTGGAGTAGGATGCCTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS GCA 90 bp CCTGTCCTGAGCACACGTCAAGAGCAAATCTTTGAAGGGATGTGTTaGAAGGCCCCAGAGTTCATCTGTATGACCCTGGACTTCTATTTG +
Preference number: 5 (lower is better)
Translates to: PVLSTRQEQIFEGMC*KAPEFICMTLDFYL
Trigger: CAAATAGAAGTCCAGGGTCATACAGATGAACTCTGGGGCCTTGCAACACATCCCTTCAAAGATTTGCTCTTGACGTGTGCTCAGGACAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS-3UTR CAA 90 bp TTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCAGACCACATGATCTTCAGAGATaGCAAGACGCCTCAAAACAT +
Preference number: 5 (lower is better)
Translates to: LESPTCPRTLLTHALPRPHDLQR*QDASKH
Trigger: ATGTTTTGAGGCGTCTTGCAATCTCTGAAGATCATG...TGGTCTGGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp CCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATAGCACATCATGATCTTCAGAGATaGCAAGACGCCTCAAAACAT +
Preference number: 5 (lower is better)
Translates to: PYKGCKAHRRRKCPQIAHHDLQR*QDASKH
Trigger: ATGTTTTGAGGCGTCTTGCAATCTCTGAAGATCATG...ATGTGCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp ACGGTTCCCAGCGCTGATGACATACCTGATGTGTTACTCCTGAGAAGGTCCTGGCATGATCTTCAGAGATaGCAAGACGCCTCAAAACAT +
Preference number: 5 (lower is better)
Translates to: TVPSADDIPDVLLLRRSWHDLQR*QDASKH
Trigger: ATGTTTTGAGGCGTCTTGCAATCTCTGAAGATCATG...CCAGGACCTTCTCAGGAGTAACACATCAGGTATGTCATCAGCGCTGGGAACCGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp CAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCGTTGCAATTCTAATCTaGTCAGGATGTACAGCAAGG +
Preference number: 5 (lower is better)
Translates to: QSLESPTCPRTLLTHALPVAILI*SGCTAR
Trigger: CCTTGCTGTACATCCTGACAAGATTAGAATTGCAAC...GGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp CTTGATTTCATCTCCACTGCTAGCTGGTGGACAGAGATGCCTGAAGCTGTGCGCGTAAGCATGTGCTCATaGGAGTCATCAATAACGCAT +
Preference number: 5 (lower is better)
Translates to: LDFISTASWWTEMPEAVRVSMCS*ESSITH
Trigger: ATGCGTTATTGATGACTCCAATGAGCACATGCTTAC...GCGCACAGCTTCAGGCATCTCTGTCCACCAGCTAGCAGTGGAGATGAAATCAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp CCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCACAGATAGCACATAAATTCCCTGTTTTCTaGTTAGTGAGTTGCCACTCC +
Preference number: 5 (lower is better)
Translates to: PYKGCKAHRRRKCPQIAHKFPVF*LVSCHS
Trigger: GGAGTGGCAACTCACTAACAAGAAAACAGGGAATTT...ATGTGCTATCTGTGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp AGACCAAAGCCGCCATACAAGGGCTGCAAGGCTCACAGGAGGAGGAAATGCCCAATCATGAGCTTTGATTaGTCTGTTGATCTGATACAC +
Preference number: 5 (lower is better)
Translates to: RPKPPYKGCKAHRRRKCPIMSFD*SVDLIH
Trigger: GTGTATCAGATCAACAGACAAATCAAAGCTCATGAT...TGGGCATTTCCTCCTCCTGTGAGCCTTGCAGCCCTTGTATGGCGGCTTTGGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp AAGGCAACACCATCGCACTTGGCAATGCTAACATTCCCCTTAAGCAAGCTCCCGGACATTATATGCTTATaGTCTGGGGACCAGTCAAGG +
Preference number: 5 (lower is better)
Translates to: KATPSHLAMLTFPLSKLPDIICL*SGDQSR
Trigger: CCTTGACTGGTCCCCAGACAATAAGCATATAATGTC...CGGGAGCTTGCTTAAGGGGAATGTTAGCATTGCCAAGTGCGATGGTGTTGCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp AATAGTTATCTGACAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACGAAGAGGCAGGGGTTTaGGTCACACTGGCGTCTGTT +
Preference number: 5 (lower is better)
Translates to: NSYLTKLRKPDLPTYTTNEEAGV*VTLASV
Trigger: AACAGACGCCAGTGTGACCAAAACCCCTGCCTCTTC...GTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTGTCAGATAACTATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp CTACCACCCAAGAGGATCATGATTATAAATCTCATTGGCCATGGCAACCCCAAACCTCAGGCAGCTCAGTaGCTCCCTGTGTCTCACTTA +
Preference number: 5 (lower is better)
Translates to: LPPKRIMIINLIGHGNPKPQAAQ*LPVSHL
Trigger: TAAGTGAGACACAGGGAGCAACTGAGCTGCCTGAGG...TTTGGGGTTGCCATGGCCAATGAGATTTATAATCATGATCCTCTTGGGTGGTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp CAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCGTGACTTTTCAGCTGTaGGTGGACGTTTTATGCTTT +
Preference number: 5 (lower is better)
Translates to: QSLESPTCPRTLLTHALPVTFQL*VDVLCF
Trigger: AAAGCATAAAACGTCCACCAACAGCTGAAAAGTCAC...GGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp CGGAGCGCTCTCTGCACATTAGTAGTGTCTTTGGAACTACCACCCAAGAGGATCCATGATCTTCAGAGATaGCAAGACGCCTCAAAACAT +
Preference number: 5 (lower is better)
Translates to: RSALCTLVVSLELPPKRIHDLQR*QDASKH
Trigger: ATGTTTTGAGGCGTCTTGCAATCTCTGAAGATCATG...GATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAATGTGCAGAGAGCGCTCCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp AAGGCAACACCATCGCACTTGGCAATGCTAACATTCCCCTTAAGCAAGCTCCCGGTTGCAATTCTAATCTaGTCAGGATGTACAGCAAGG +
Preference number: 5 (lower is better)
Translates to: KATPSHLAMLTFPLSKLPVAILI*SGCTAR
Trigger: CCTTGCTGTACATCCTGACAAGATTAGAATTGCAAC...CGGGAGCTTGCTTAAGGGGAATGTTAGCATTGCCAAGTGCGATGGTGTTGCCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS TCA 90 bp CTCAAAAGTTCCAAGTCCAATAACATGCAGTGTGGTAAGACTTACTaGATCCCACACCCTGACATGGGGTTGCAGAGGCCTTCCATCTTT +
Preference number: 5 (lower is better)
Translates to: LKSSKSNNMQCGKTY*IPHPDMGLQRPSIF
Trigger: AAAGATGGAAGGCCTCTGCAACCCCATGTCAGGGTGTGGGATTCAGTAAGTCTTACCACACTGCATGTTATTGGACTTGGAACTTTTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS GCA 90 bp TTGCAGAGGCCTTCCATCTTTGTCTACTCCGGCTATCTGTCCAGTTaGAATTCTAATCTTGTCAGGATGTACAGCAAGGCATCTCACACA +
Preference number: 5 (lower is better)
Translates to: LQRPSIFVYSGYLSS*NSNLVRMYSKASHT
Trigger: TGTGTGAGATGCCTTGCTGTACATCCTGACAAGATTAGAATTGCAACTGGACAGATAGCCGGAGTAGACAAAGATGGAAGGCCTCTGCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS CCA 90 bp GTCCTTTCCTCGATAACCGTATACCCACTCCAGTTTGAGCTTCTCTaGAGGCAGTTCTGTTCTGATGTCATCATAGTTGTCAACATCCGA +
Preference number: 5 (lower is better)
Translates to: VLSSITVYPLQFELL*RQFCSDVIIVVNIR
Trigger: TCGGATGTTGACAACTATGATGACATCAGAACAGAACTGCCTCCAGAGAAGCTCAAACTGGAGTGGGTATACGGTTATCGAGGAAAGGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS-3UTR CAA 90 bp ACGGTTCCCAGCGCTGATGACATACCTGATGTGTTACTCCTGAGAAGGTCCTGGCTTATACCACTTCCATaGGTTATACAGGACATAGAA +
Preference number: 5 (lower is better)
Translates to: TVPSADDIPDVLLLRRSWLIPLP*VIQDIE
Trigger: TTCTATGTCCTGTATAACCAATGGAAGTGGTATAAG...CCAGGACCTTCTCAGGAGTAACACATCAGGTATGTCATCAGCGCTGGGAACCGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp TTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCAGACCACTTATACCACTTCCATaGGTTATACAGGACATAGAA +
Preference number: 5 (lower is better)
Translates to: LESPTCPRTLLTHALPRPLIPLP*VIQDIE
Trigger: TTCTATGTCCTGTATAACCAATGGAAGTGGTATAAG...TGGTCTGGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp AATAGTTATCTGACAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACAGAGGCCTTCCATCTTaGTCTACTCCGGCTATCTGT +
Preference number: 5 (lower is better)
Translates to: NSYLTKLRKPDLPTYTTNRGLPS*STPAIC
Trigger: ACAGATAGCCGGAGTAGACAAAGATGGAAGGCCTCT...GTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTGTCAGATAACTATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp TCCAATGGCTGCAGCTGCAGTTTGGTTTCCAGTATCTGCAGCACAAATGTGGATTTTCTTGTTAGTGAGTaGCCACTCCAGGTCCAGAAA +
Preference number: 5 (lower is better)
Translates to: SNGCSCSLVSSICSTNVDFLVSE*PLQVQK
Trigger: TTTCTGGACCTGGAGTGGCAACTCACTAACAAGAAA...ATCCACATTTGTGCTGCAGATACTGGAAACCAAACTGCAGCTGCAGCCATTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp CAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACACATGCACTGCCCATCATGAGCTTTGATTaGTCTGTTGATCTGATACAC +
Preference number: 5 (lower is better)
Translates to: QSLESPTCPRTLLTHALPIMSFD*SVDLIH
Trigger: GTGTATCAGATCAACAGACAAATCAAAGCTCATGAT...GGGCAGTGCATGTGTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp TCCAATGGCTGCAGCTGCAGTTTGGTTTCCAGTATCTGCAGCACAAATGTGGATGACATTATATGCTTATaGTCTGGGGACCAGTCAAGG +
Preference number: 5 (lower is better)
Translates to: SNGCSCSLVSSICSTNVDDIICL*SGDQSR
Trigger: CCTTGACTGGTCCCCAGACAATAAGCATATAATGTC...ATCCACATTTGTGCTGCAGATACTGGAAACCAAACTGCAGCTGCAGCCATTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp TCCAATGGCTGCAGCTGCAGTTTGGTTTCCAGTATCTGCAGCACAAATGTGGATCGGTTCCTGATTAGTTaGCAGCCATTTTCAATGTCC +
Preference number: 5 (lower is better)
Translates to: SNGCSCSLVSSICSTNVDRFLIS*QPFSMS
Trigger: GGACATTGAAAATGGCTGCAAACTAATCAGGAACCG...ATCCACATTTGTGCTGCAGATACTGGAAACCAAACTGCAGCTGCAGCCATTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS TCA 90 bp GTAGTGTCGCTGAGTCCTCTCCTCATAATTAAACAGGACTACCACTaGGGCGATAAAATAAACTATCTCCCCTGTGGGAAGCAGGTATAC +
Preference number: 5 (lower is better)
Translates to: VVSLSPLLIIKQDYH*GDKINYLPCGKQVY
Trigger: GTATACCTGCTTCCCACAGGGGAGATAGTTTATTTTATCGCCTCAGTGGTAGTCCTGTTTAATTATGAGGAGAGGACTCAGCGACACTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS-3UTR CAA 90 bp TCCAATGGCTGCAGCTGCAGTTTGGTTTCCAGTATCTGCAGCACAAATGTGGATGTTGCAATTCTAATCTaGTCAGGATGTACAGCAAGG +
Preference number: 5 (lower is better)
Translates to: SNGCSCSLVSSICSTNVDVAILI*SGCTAR
Trigger: CCTTGCTGTACATCCTGACAAGATTAGAATTGCAAC...ATCCACATTTGTGCTGCAGATACTGGAAACCAAACTGCAGCTGCAGCCATTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp CGGAGCGCTCTCTGCACATTAGTAGTGTCTTTGGAACTACCACCCAAGAGGATCCCAAAACAACTTCGTTaGTTGTCTTTATTTCTGCGA +
Preference number: 5 (lower is better)
Translates to: RSALCTLVVSLELPPKRIPKQLR*LSLFLR
Trigger: TCGCAGAAATAAAGACAACAAACGAAGTTGTTTTGG...GATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAATGTGCAGAGAGCGCTCCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp TGTAAGAAAATGCAATATCCCATGGAAAGGCAACACCATCGCACTTGGCAATGCGCACACAGGTATATGTaGTCCAATCGATGTCCTTGC +
Preference number: 5 (lower is better)
Translates to: CKKMQYPMERQHHRTWQCAHRYM*SNRCPC
Trigger: GCAAGGACATCGATTGGACAACATATACCTGTGTGC...GCATTGCCAAGTGCGATGGTGTTGCCTTTCCATGGGATATTGCATTTTCTTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp TCCAATGGCTGCAGCTGCAGTTTGGTTTCCAGTATCTGCAGCACAAATGTGGATGTGACTTTTCAGCTGTaGGTGGACGTTTTATGCTTT +
Preference number: 5 (lower is better)
Translates to: SNGCSCSLVSSICSTNVDVTFQL*VDVLCF
Trigger: AAAGCATAAAACGTCCACCAACAGCTGAAAAGTCAC...ATCCACATTTGTGCTGCAGATACTGGAAACCAAACTGCAGCTGCAGCCATTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS TCA 90 bp CCTCGTTTTGAGGCACAGGTAACTTTTCCACAAGCTTCCACTGAATaGTGCTCATATCCTTCCCACCAGTTGAAATTAGGTGACTGTCAT +
Preference number: 5 (lower is better)
Translates to: PRFEAQVTFPQASTE*CSYPSHQLKLGDCH
Trigger: ATGACAGTCACCTAATTTCAACTGGTGGGAAGGATATGAGCATCATTCAGTGGAAGCTTGTGGAAAAGTTACCTGTGCCTCAAAACGAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS-3UTR CAA 90 bp CTACCACCCAAGAGGATCATGATTATAAATCTCATTGGCCATGGCAACCCCAAATTTCTTGTTAGTGAGTaGCCACTCCAGGTCCAGAAA +
Preference number: 5 (lower is better)
Translates to: LPPKRIMIINLIGHGNPKFLVSE*PLQVQK
Trigger: TTTCTGGACCTGGAGTGGCAACTCACTAACAAGAAA...TTTGGGGTTGCCATGGCCAATGAGATTTATAATCATGATCCTCTTGGGTGGTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp AATAGTTATCTGACAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACCGGTTCCTGATTAGTTaGCAGCCATTTTCAATGTCC +
Preference number: 5 (lower is better)
Translates to: NSYLTKLRKPDLPTYTTNRFLIS*QPFSMS
Trigger: GGACATTGAAAATGGCTGCAAACTAATCAGGAACCG...GTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTGTCAGATAACTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp AATAGTTATCTGACAAAGCTTAGAAAGCCCGACCTGCCCACGTACACTACTAACCTTGCTCTCTGGAGTTaGTCTGTTTATTTGGAGAGG +
Preference number: 5 (lower is better)
Translates to: NSYLTKLRKPDLPTYTTNLALWS*SVYLER
Trigger: CCTCTCCAAATAAACAGACAAACTCCAGAGAGCAAG...GTTAGTAGTGTACGTGGGCAGGTCGGGCTTTCTAAGCTTTGTCAGATAACTATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096766.12
CDS-3UTR CAA 90 bp TGTAAGAAAATGCAATATCCCATGGAAAGGCAACACCATCGCACTTGGCAATGCGGACGTTTTATGCTTTaGATGGGAGCAGAACTCTTG +
Preference number: 5 (lower is better)
Translates to: CKKMQYPMERQHHRTWQCGRFML*MGAELL
Trigger: CAAGAGTTCTGCTCCCATCAAAAGCATAAAACGTCC...GCATTGCCAAGTGCGATGGTGTTGCCTTTCCATGGGATATTGCATTTTCTTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096766.12
CDS-3UTR CAA 90 bp TCCAATGGCTGCAGCTGCAGTTTGGTTTCCAGTATCTGCAGCACAAATGTGGATAAAGAGTTTCTTTTCTaGCTATTGATACAGAGCTGG +
Preference number: 5 (lower is better)
Translates to: SNGCSCSLVSSICSTNVDKEFLF*LLIQSW
Trigger: CCAGCTCTGTATCAATAGCAAGAAAAGAAACTCTTT...ATCCACATTTGTGCTGCAGATACTGGAAACCAAACTGCAGCTGCAGCCATTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp TGTAAGAAAATGCAATATCCCATGGAAAGGCAACACCATCGCACTTGGCAATGCACCCTGGACTTCTATTaGGAAGCCATCATTAAACGT +
Preference number: 5 (lower is better)
Translates to: CKKMQYPMERQHHRTWQCTLDFY*EAIIKR
Trigger: ACGTTTAATGATGGCTTCCAAATAGAAGTCCAGGGT...GCATTGCCAAGTGCGATGGTGTTGCCTTTCCATGGGATATTGCATTTTCTTACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS TCA 90 bp AGGTATATGTTGTCCAATCGATGTCCTTGCAATCTGATCGGTTCCTaGTTAGTTTGCAGCCATTTTCAATGTCCCAGTACAGTATCTCGT +
Preference number: 5 (lower is better)
Translates to: RYMLSNRCPCNLIGS*LVCSHFQCPSTVSR
Trigger: ACGAGATACTGTACTGGGACATTGAAAATGGCTGCAAACTAATCAGGAACCGATCAGATTGCAAGGACATCGATTGGACAACATATACCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS-3UTR CAA 90 bp TGTAAGAAAATGCAATATCCCATGGAAAGGCAACACCATCGCACTTGGCAATGCCTTATACCACTTCCATaGGTTATACAGGACATAGAA +
Preference number: 5 (lower is better)
Translates to: CKKMQYPMERQHHRTWQCLIPLP*VIQDIE
Trigger: TTCTATGTCCTGTATAACCAATGGAAGTGGTATAAG...GCATTGCCAAGTGCGATGGTGTTGCCTTTCCATGGGATATTGCATTTTCTTACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp TTAGTAGTGTCTTTGGAACTACCACCCAAGAGGATCATGATTATAAATCTCATTTATACCCACTCCAGTTaGAGCTTCTCTGGAGGCAGT +
Preference number: 5 (lower is better)
Translates to: LVVSLELPPKRIMIINLIYTHSS*SFSGGS
Trigger: ACTGCCTCCAGAGAAGCTCAAACTGGAGTGGGTATA...AATGAGATTTATAATCATGATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp TTAGTAGTGTCTTTGGAACTACCACCCAAGAGGATCATGATTATAAATCTCATTAGAGGCCTTCCATCTTaGTCTACTCCGGCTATCTGT +
Preference number: 5 (lower is better)
Translates to: LVVSLELPPKRIMIINLIRGLPS*STPAIC
Trigger: ACAGATAGCCGGAGTAGACAAAGATGGAAGGCCTCT...AATGAGATTTATAATCATGATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp TGTAAGAAAATGCAATATCCCATGGAAAGGCAACACCATCGCACTTGGCAATGCCCAAAACAACTTCGTTaGTTGTCTTTATTTCTGCGA +
Preference number: 5 (lower is better)
Translates to: CKKMQYPMERQHHRTWQCPKQLR*LSLFLR
Trigger: TCGCAGAAATAAAGACAACAAACGAAGTTGTTTTGG...GCATTGCCAAGTGCGATGGTGTTGCCTTTCCATGGGATATTGCATTTTCTTACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp AAACATAGGCAATGCACACTTGTCAATCACTGGAGTAGGAAACACATACTTAGGAAATTCCCTGTTTTCTaGTTAGTGAGTTGCCACTCC +
Preference number: 5 (lower is better)
Translates to: KHRQCTLVNHWSRKHILRKFPVF*LVSCHS
Trigger: GGAGTGGCAACTCACTAACAAGAAAACAGGGAATTT...CCTAAGTATGTGTTTCCTACTCCAGTGATTGACAAGTGTGCATTGCCTATGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp AAACATAGGCAATGCACACTTGTCAATCACTGGAGTAGGAAACACATACTTAGGACCCTGGACTTCTATTaGGAAGCCATCATTAAACGT +
Preference number: 5 (lower is better)
Translates to: KHRQCTLVNHWSRKHILRTLDFY*EAIIKR
Trigger: ACGTTTAATGATGGCTTCCAAATAGAAGTCCAGGGT...CCTAAGTATGTGTTTCCTACTCCAGTGATTGACAAGTGTGCATTGCCTATGTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp AAACATAGGCAATGCACACTTGTCAATCACTGGAGTAGGAAACACATACTTAGGTATCCTTCCCACCAGTaGAAATTAGGTGACTGTCAT +
Preference number: 5 (lower is better)
Translates to: KHRQCTLVNHWSRKHILRYPSHQ*KLGDCH
Trigger: ATGACAGTCACCTAATTTCAACTGGTGGGAAGGATA...CCTAAGTATGTGTTTCCTACTCCAGTGATTGACAAGTGTGCATTGCCTATGTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp AAACATAGGCAATGCACACTTGTCAATCACTGGAGTAGGAAACACATACTTAGGGTGACTTTTCAGCTGTaGGTGGACGTTTTATGCTTT +
Preference number: 5 (lower is better)
Translates to: KHRQCTLVNHWSRKHILRVTFQL*VDVLCF
Trigger: AAAGCATAAAACGTCCACCAACAGCTGAAAAGTCAC...CCTAAGTATGTGTTTCCTACTCCAGTGATTGACAAGTGTGCATTGCCTATGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS CCA 90 bp GTCAGAGGTACTTGCAGCAGAAATACTATCATCTGGTATAGCCACTaGATCACTGGATACTCTGTTCATTTTGCTTCTATTACAATCCAT +
Preference number: 5 (lower is better)
Translates to: VRGTCSRNTIIWYSH*ITGYSVHFASITIH
Trigger: ATGGATTGTAATAGAAGCAAAATGAACAGAGTATCCAGTGATCCAGTGGCTATACCAGATGATAGTATTTCTGCTGCAAGTACCTCTGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp TTAGTAGTGTCTTTGGAACTACCACCCAAGAGGATCATGATTATAAATCTCATTTGCCATCCGTGTGGATaGACACCAGATCTCTTGTTT +
Preference number: 5 (lower is better)
Translates to: LVVSLELPPKRIMIINLICHPCG*TPDLLF
Trigger: AAACAAGAGATCTGGTGTCAATCCACACGGATGGCA...AATGAGATTTATAATCATGATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp AAACATAGGCAATGCACACTTGTCAATCACTGGAGTAGGAAACACATACTTAGGAAAGAGTTTCTTTTCTaGCTATTGATACAGAGCTGG +
Preference number: 5 (lower is better)
Translates to: KHRQCTLVNHWSRKHILRKEFLF*LLIQSW
Trigger: CCAGCTCTGTATCAATAGCAAGAAAAGAAACTCTTT...CCTAAGTATGTGTTTCCTACTCCAGTGATTGACAAGTGTGCATTGCCTATGTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp TTAGTAGTGTCTTTGGAACTACCACCCAAGAGGATCATGATTATAAATCTCATTTTTCTTGTTAGTGAGTaGCCACTCCAGGTCCAGAAA +
Preference number: 5 (lower is better)
Translates to: LVVSLELPPKRIMIINLIFLVSE*PLQVQK
Trigger: TTTCTGGACCTGGAGTGGCAACTCACTAACAAGAAA...AATGAGATTTATAATCATGATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp TTAGTAGTGTCTTTGGAACTACCACCCAAGAGGATCATGATTATAAATCTCATTGACATTATATGCTTATaGTCTGGGGACCAGTCAAGG +
Preference number: 5 (lower is better)
Translates to: LVVSLELPPKRIMIINLIDIICL*SGDQSR
Trigger: CCTTGACTGGTCCCCAGACAATAAGCATATAATGTC...AATGAGATTTATAATCATGATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp TTAGTAGTGTCTTTGGAACTACCACCCAAGAGGATCATGATTATAAATCTCATTCGGTTCCTGATTAGTTaGCAGCCATTTTCAATGTCC +
Preference number: 5 (lower is better)
Translates to: LVVSLELPPKRIMIINLIRFLIS*QPFSMS
Trigger: GGACATTGAAAATGGCTGCAAACTAATCAGGAACCG...AATGAGATTTATAATCATGATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS CCA 90 bp GATGTCATCATAGTTGTCAACATCCGAAGGAATGAACATTGTAATTaGCCGACCTCGCATAAACATTTTAATATATTCTCCTTCTTGGCT +
Preference number: 5 (lower is better)
Translates to: DVIIVVNIRRNEHCN*PTSHKHFNIFSFLA
Trigger: AGCCAAGAAGGAGAATATATTAAAATGTTTATGCGAGGTCGGCCAATTACAATGTTCATTCCTTCGGATGTTGACAACTATGATGACATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096766.12
ENSMUST00000234460.2
CDS-3UTR CAA 90 bp TTAGTAGTGTCTTTGGAACTACCACCCAAGAGGATCATGATTATAAATCTCATTACCCTGGACTTCTATTaGGAAGCCATCATTAAACGT +
Preference number: 5 (lower is better)
Translates to: LVVSLELPPKRIMIINLITLDFY*EAIIKR
Trigger: ACGTTTAATGATGGCTTCCAAATAGAAGTCCAGGGT...AATGAGATTTATAATCATGATCCTCTTGGGTGGTAGTTCCAAAGACACTACTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
CDS GCA 72 bp ATCACCACACCAAGGTCTTCGCTACCCCACTCGCTCTaGTCCTCGCTGGGCTCTGCGATCTGCTCCAGGCTG +
Preference number: 6 (lower is better)
Translates to: ITTPRSSLPHSL*SSLGSAICSRL
Trigger: CAGCCTGGAGCAGATCGCAGAGCCCAGCGAGGAGCAGAGCGAGTGGGGTAGCGAAGACCTTGGTGTGGTGAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS GCA 72 bp TCTGCTCCAGGCTGTTCTCCACTAGTGTGGGGGAGCTaGCCATCCTGCTTTCCTCTTCAGCCGTCCCAGTTA +
Preference number: 6 (lower is better)
Translates to: SAPGCSPLVWGS*PSCFPLQPSQL
Trigger: TAACTGGGACGGCTGAAGAGGAAAGCAGGATGGGCAGCTCCCCCACACTAGTGGAGAACAGCCTGGAGCAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS CAA 72 bp TTAGGTCCTTTCCCGGGCGGGGGCTCTACCATCGTTTaGCTCCAGATCAGCATGACTCCACCCGAGTCTCCA +
Preference number: 6 (lower is better)
Translates to: LGPFPGGGSTIV*LQISMTPPESP
Trigger: TGGAGACTCGGGTGGAGTCATGCTGATCTGGAGCAAAACGATGGTAGAGCCCCCGCCCGGGAAAGGACCTAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS CAA 90 bp TCGGCCACTGCGATCACTCTTCTGTTGTGGGATCGAACCAGTGCGTaGATGTCTGTTCCATCGGACCCTTCCGGCCACACCCCAAAGACT +
Preference number: 6 (lower is better)
Translates to: SATAITLLLWDRTSA*MSVPSDPSGHTPKT
Trigger: AGTCTTTGGGGTGTGGCCGGAAGGGTCCGATGGAACAGACATCAACGCACTGGTTCGATCCCACAACAGAAGAGTGATCGCAGTGGCCGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS CAA 72 bp GCGATCACTCTTCTGTTGTGGGATCGAACCAGTGCGTaGATGTCTGTTCCATCGGACCCTTCCGGCCACACC +
Preference number: 6 (lower is better)
Translates to: AITLLLWDRTSA*MSVPSDPSGHT
Trigger: GGTGTGGCCGGAAGGGTCCGATGGAACAGACATCAACGCACTGGTTCGATCCCACAACAGAAGAGTGATCGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS CAA 90 bp TACACACCTTTAGGTCCTTTCCCGGGCGGGGGCTCTACCATCGTTTaGCTCCAGATCAGCATGACTCCACCCGAGTCTCCAGTGAGAACA +
Preference number: 6 (lower is better)
Translates to: YTPLGPFPGGGSTIV*LQISMTPPESPVRT
Trigger: TGTTCTCACTGGAGACTCGGGTGGAGTCATGCTGATCTGGAGCAAAACGATGGTAGAGCCCCCGCCCGGGAAAGGACCTAAAGGTGTGTA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS GCA 72 bp CACTGCGATCACTCTTCTGTTGTGGGATCGAACCAGTaGGTTGATGTCTGTTCCATCGGACCCTTCCGGCCA +
Preference number: 6 (lower is better)
Translates to: HCDHSSVVGSNQ*VDVCSIGPFRP
Trigger: TGGCCGGAAGGGTCCGATGGAACAGACATCAACGCACTGGTTCGATCCCACAACAGAAGAGTGATCGCAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS TCA 72 bp GAGTGCGTTCCAATGGCTACCACTGTACCGCTTGGATaGAAGTCTGCACAGTGTCCTGGTTCGTCCACAAGC +
Preference number: 6 (lower is better)
Translates to: ECVPMATTVPLG*KSAQCPGSSTS
Trigger: GCTTGTGGACGAACCAGGACACTGTGCAGACTTTCATCCAAGCGGTACAGTGGTAGCCATTGGAACGCACTC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS CCA 72 bp CATCCAGAACAAACCACCTGCCTGAGTGCGTTCCAATaGCTACCACTGTACCGCTTGGATGAAAGTCTGCAC +
Preference number: 6 (lower is better)
Translates to: HPEQTTCLSAFQ*LPLYRLDESLH
Trigger: GTGCAGACTTTCATCCAAGCGGTACAGTGGTAGCCATTGGAACGCACTCAGGCAGGTGGTTTGTTCTGGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS TCA 72 bp TGCTCCACTGAGTTCCACATGCACACCTGCCTGTCCTaGGCACACGTCAAGAGCAAATCTTTGAAGGGATGT +
Preference number: 6 (lower is better)
Translates to: CSTEFHMHTCLS*AHVKSKSLKGC
Trigger: ACATCCCTTCAAAGATTTGCTCTTGACGTGTGCTCAGGACAGGCAGGTGTGCATGTGGAACTCAGTGGAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS GCA 72 bp GTAAGACTTACTGAATCCCACACCCTGACATGGGGTTaGAGAGGCCTTCCATCTTTGTCTACTCCGGCTATC +
Preference number: 6 (lower is better)
Translates to: VRLTESHTLTWG*RGLPSLSTPAI
Trigger: GATAGCCGGAGTAGACAAAGATGGAAGGCCTCTGCAACCCCATGTCAGGGTGTGGGATTCAGTAAGTCTTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS TCA 72 bp TCCAAGTCCAATAACATGCAGTGTGGTAAGACTTACTaGATCCCACACCCTGACATGGGGTTGCAGAGGCCT +
Preference number: 6 (lower is better)
Translates to: SKSNNMQCGKTY*IPHPDMGLQRP
Trigger: AGGCCTCTGCAACCCCATGTCAGGGTGTGGGATTCAGTAAGTCTTACCACACTGCATGTTATTGGACTTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS GCA 72 bp AGCACACGTCAAGAGCAAATCTTTGAAGGGATGTGTTaGAAGGCCCCAGAGTTCATCTGTATGACCCTGGAC +
Preference number: 6 (lower is better)
Translates to: STRQEQIFEGMC*KAPEFICMTLD
Trigger: GTCCAGGGTCATACAGATGAACTCTGGGGCCTTGCAACACATCCCTTCAAAGATTTGCTCTTGACGTGTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS TCA 72 bp GCCCTTCCCTCTGCAACTGCTCTAATGGTGCCATACTaGTCAGGAACCTCTATTTCTCTTTCAAGGTTCAGA +
Preference number: 6 (lower is better)
Translates to: ALPSATALMVPY*SGTSISLSRFR
Trigger: TCTGAACCTTGAAAGAGAAATAGAGGTTCCTGATCAGTATGGCACCATTAGAGCAGTTGCAGAGGGAAGGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS GCA 72 bp CCTACTCCACGCTCAAAAGTTCCAAGTCCAATAACATaGAGTGTGGTAAGACTTACTGAATCCCACACCCTG +
Preference number: 6 (lower is better)
Translates to: PTPRSKVPSPIT*SVVRLTESHTL
Trigger: CAGGGTGTGGGATTCAGTAAGTCTTACCACACTGCATGTTATTGGACTTGGAACTTTTGAGCGTGGAGTAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS CAA 90 bp TACTTGGCATGGACTTTTTCACTGAGGCTACATGATCTTCAGAGATaGCAAGACGCCTCAAAACATCAGCCAATGCTGCCTTTAGCACAG +
Preference number: 6 (lower is better)
Translates to: YLAWTFSLRLHDLQR*QDASKHQPMLPLAQ
Trigger: CTGTGCTAAAGGCAGCATTGGCTGATGTTTTGAGGCGTCTTGCAATCTCTGAAGATCATGTAGCCTCAGTGAAAAAGTCCATGCCAAGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS CAA 90 bp TCTCATCTGACAAAGTGTAAACACACTGCCATCATGAGCTTTGATTaGTCTGTTGATCTGATACACACCTTTAGGTCCTTTCCCGGGCGG +
Preference number: 6 (lower is better)
Translates to: SHLTKCKHTAIMSFD*SVDLIHTFRSFPGR
Trigger: CCGCCCGGGAAAGGACCTAAAGGTGTGTATCAGATCAACAGACAAATCAAAGCTCATGATGGCAGTGTGTTTACACTTTGTCAGATGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS CAA 90 bp TCAGCTGTTGGTGGACGTTTTATGCTTTTGATGGGAGCAGAACTCTaGCTCTCTGGAGTTTGTCTGTTTATTTGGAGAGGCTGTGAAGAG +
Preference number: 6 (lower is better)
Translates to: SAVGGRFMLLMGAEL*LSGVCLFIWRGCEE
Trigger: CTCTTCACAGCCTCTCCAAATAAACAGACAAACTCCAGAGAGCAAGAGTTCTGCTCCCATCAAAAGCATAAAACGTCCACCAACAGCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096766.12
ENSMUST00000234584.2
CDS GCA 72 bp CCTTCCATCTTTGTCTACTCCGGCTATCTGTCCAGTTaGAATTCTAATCTTGTCAGGATGTACAGCAAGGCA +
Preference number: 6 (lower is better)
Translates to: PSIFVYSGYLSS*NSNLVRMYSKA
Trigger: TGCCTTGCTGTACATCCTGACAAGATTAGAATTGCAACTGGACAGATAGCCGGAGTAGACAAAGATGGAAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS CCA 72 bp TCGATAACCGTATACCCACTCCAGTTTGAGCTTCTCTaGAGGCAGTTCTGTTCTGATGTCATCATAGTTGTC +
Preference number: 6 (lower is better)
Translates to: SITVYPLQFELL*RQFCSDVIIVV
Trigger: GACAACTATGATGACATCAGAACAGAACTGCCTCCAGAGAAGCTCAAACTGGAGTGGGTATACGGTTATCGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS CAA 72 bp TGGACTTTTTCACTGAGGCTACATGATCTTCAGAGATaGCAAGACGCCTCAAAACATCAGCCAATGCTGCCT +
Preference number: 6 (lower is better)
Translates to: WTFSLRLHDLQR*QDASKHQPMLP
Trigger: AGGCAGCATTGGCTGATGTTTTGAGGCGTCTTGCAATCTCTGAAGATCATGTAGCCTCAGTGAAAAAGTCCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS CAA 72 bp TCTACTCCGGCTATCTGTCCAGTTGCAATTCTAATCTaGTCAGGATGTACAGCAAGGCATCTCACACAGTCT +
Preference number: 6 (lower is better)
Translates to: STPAICPVAILI*SGCTARHLTQS
Trigger: AGACTGTGTGAGATGCCTTGCTGTACATCCTGACAAGATTAGAATTGCAACTGGACAGATAGCCGGAGTAGA
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS CAA 72 bp CCTAGCACACAGGTATATGTTGTCCAATCGATGTCCTaGCAATCTGATCGGTTCCTGATTAGTTTGCAGCCA +
Preference number: 6 (lower is better)
Translates to: PSTQVYVVQSMS*QSDRFLISLQP
Trigger: TGGCTGCAAACTAATCAGGAACCGATCAGATTGCAAGGACATCGATTGGACAACATATACCTGTGTGCTAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS TCA 72 bp CTGAGTCCTCTCCTCATAATTAAACAGGACTACCACTaGGGCGATAAAATAAACTATCTCCCCTGTGGGAAG +
Preference number: 6 (lower is better)
Translates to: LSPLLIIKQDYH*GDKINYLPCGK
Trigger: CTTCCCACAGGGGAGATAGTTTATTTTATCGCCTCAGTGGTAGTCCTGTTTAATTATGAGGAGAGGACTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS TCA 72 bp GAGGCACAGGTAACTTTTCCACAAGCTTCCACTGAATaGTGCTCATATCCTTCCCACCAGTTGAAATTAGGT +
Preference number: 6 (lower is better)
Translates to: EAQVTFPQASTE*CSYPSHQLKLG
Trigger: ACCTAATTTCAACTGGTGGGAAGGATATGAGCATCATTCAGTGGAAGCTTGTGGAAAAGTTACCTGTGCCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS CAA 72 bp TCGATGTCCTTGCAATCTGATCGGTTCCTGATTAGTTaGCAGCCATTTTCAATGTCCCAGTACAGTATCTCG +
Preference number: 6 (lower is better)
Translates to: SMSLQSDRFLIS*QPFSMSQYSIS
Trigger: CGAGATACTGTACTGGGACATTGAAAATGGCTGCAAACTAATCAGGAACCGATCAGATTGCAAGGACATCGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS CAA 90 bp ACTTGGAAGCCTAGCACACAGGTATATGTTGTCCAATCGATGTCCTaGCAATCTGATCGGTTCCTGATTAGTTTGCAGCCATTTTCAATG +
Preference number: 6 (lower is better)
Translates to: TWKPSTQVYVVQSMS*QSDRFLISLQPFSM
Trigger: CATTGAAAATGGCTGCAAACTAATCAGGAACCGATCAGATTGCAAGGACATCGATTGGACAACATATACCTGTGTGCTAGGCTTCCAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS TCA 72 bp CCTTTACTTGGCATGGACTTTTTCACTGAGGCTACATaGTCTTCAGAGATTGCAAGACGCCTCAAAACATCA +
Preference number: 6 (lower is better)
Translates to: PLLGMDFFTEAT*SSEIARRLKTS
Trigger: TGATGTTTTGAGGCGTCTTGCAATCTCTGAAGATCATGTAGCCTCAGTGAAAAAGTCCATGCCAAGTAAAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS TCA 72 bp TTGTCCAATCGATGTCCTTGCAATCTGATCGGTTCCTaGTTAGTTTGCAGCCATTTTCAATGTCCCAGTACA +
Preference number: 6 (lower is better)
Translates to: LSNRCPCNLIGS*LVCSHFQCPST
Trigger: TGTACTGGGACATTGAAAATGGCTGCAAACTAATCAGGAACCGATCAGATTGCAAGGACATCGATTGGACAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS CCA 72 bp ACTTGCAGCAGAAATACTATCATCTGGTATAGCCACTaGATCACTGGATACTCTGTTCATTTTGCTTCTATT +
Preference number: 6 (lower is better)
Translates to: TCSRNTIIWYSH*ITGYSVHFASI
Trigger: AATAGAAGCAAAATGAACAGAGTATCCAGTGATCCAGTGGCTATACCAGATGATAGTATTTCTGCTGCAAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234460.2
CDS CAA 72 bp ACAAAGTGTAAACACACTGCCATCATGAGCTTTGATTaGTCTGTTGATCTGATACACACCTTTAGGTCCTTT +
Preference number: 6 (lower is better)
Translates to: TKCKHTAIMSFD*SVDLIHTFRSF
Trigger: AAAGGACCTAAAGGTGTGTATCAGATCAACAGACAAATCAAAGCTCATGATGGCAGTGTGTTTACACTTTGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2
CDS CCA 72 bp ATAGTTGTCAACATCCGAAGGAATGAACATTGTAATTaGCCGACCTCGCATAAACATTTTAATATATTCTCC +
Preference number: 6 (lower is better)
Translates to: IVVNIRRNEHCN*PTSHKHFNIFS
Trigger: GGAGAATATATTAAAATGTTTATGCGAGGTCGGCCAATTACAATGTTCATTCCTTCGGATGTTGACAACTAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000049503.10
ENSMUST00000096766.12
ENSMUST00000112363.10
ENSMUST00000234460.2
ENSMUST00000234584.2