Pregenerated sensors for EMCN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000054690Ensembl transcript IDs: ENSMUST00000119475.6, ENSMUST00000122064.8, ENSMUST00000197511.2
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCCTCATATTCCAACCCAATGCTTGCCACAATTATGGGGCTACAATaGCAGTGCCACACGAGCCGTGATGTTGAGCATGCTGAGTACAGC | + |
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Preference number: 1 (lower is better) Translates to: SSYSNPMLATIMGLQ*QCHTSRDVEHAEYS Trigger: GCTGTACTCAGCATGCTCAACATCACGGCTCGTGTGGCACTGGCATTGTAGCCCCATAATTGTGGCAAGCATTGGGTTGGAATATGAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122064.8 |
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| 3UTR TCA 90 bp | CTCACACAGGAGATATCCAGAGCTCTTTATGGTACTATCAGGTGGTaGTATGGCATTCCTTTGCTAAGACAGGTGACTGGTGTAGACTGG | + |
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Preference number: 1 (lower is better) Translates to: LTQEISRALYGTIRW*YGIPLLRQVTGVDW Trigger: CCAGTCTACACCAGTCACCTGTCTTAGCAAAGGAATGCCATATCACCACCTGATAGTACCATAAAGAGCTCTGGATATCTCCTGTGTGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000119475.6 ENSMUST00000122064.8 |
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| 3UTR TCA 90 bp | GTTAATTCCAGAAATTTCCCCAGAGCTCTAGCCATCTTAACATTTTaGTCTCACATGCCACGAACATGGTCAAGGTTGATCAAGGTTTCA | + |
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Preference number: 1 (lower is better) Translates to: VNSRNFPRALAILTF*SHMPRTWSRLIKVS Trigger: TGAAACCTTGATCAACCTTGACCATGTTCGTGGCATGTGAGATCAAAATGTTAAGATGGCTAGAGCTCTGGGGAAATTTCTGGAATTAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000122064.8 |
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| 3UTR-3UTR CCA 90 bp | CATGCCACGAACATGGTCAAGGTTGATCAAGGTTTCAAGAGTGGAATCTGTTCTTGCTTGCCACAATTATaGGGCTACAATGCCAGTGCC | + |
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Preference number: 2 (lower is better) Translates to: HATNMVKVDQGFKSGICSCLPQL*GYNASA Trigger: GGCACTGGCATTGTAGCCCCATAATTGTGGCAAGCA...AGAACAGATTCCACTCTTGAAACCTTGATCAACCTTGACCATGTTCGTGGCATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000122064.8 |
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| 3UTR-3UTR CCA 90 bp | CACACTTGCAAAACTCTTCCTGTGTTAACACAGTGGGAAACAATAAATACTGACGCTAAGACAGGTGACTaGTGTAGACTGGTGAGAAGA | + |
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Preference number: 2 (lower is better) Translates to: HTCKTLPVLTQWETINTDAKTGD*CRLVRR Trigger: TCTTCTCACCAGTCTACACCAGTCACCTGTCTTAGC...GTCAGTATTTATTGTTTCCCACTGTGTTAACACAGGAAGAGTTTTGCAAGTGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000119475.6 ENSMUST00000122064.8 |
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| 3UTR-3UTR TCA 90 bp | CACACTTGCAAAACTCTTCCTGTGTTAACACAGTGGGAAACAATAAATACTGACACTGGTGTAGACTGGTaGGAAGACTGGAAATTGTGT | + |
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Preference number: 2 (lower is better) Translates to: HTCKTLPVLTQWETINTDTGVDW*EDWKLC Trigger: ACACAATTTCCAGTCTTCTCACCAGTCTACACCAGT...GTCAGTATTTATTGTTTCCCACTGTGTTAACACAGGAAGAGTTTTGCAAGTGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000119475.6 ENSMUST00000122064.8 |
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| 3UTR-3UTR TCA 90 bp | CAACATGACTCTATAACATATGCCTTCACCTTCCCTCAGATCAGTAAAATAAGCGGTACTATCAGGTGGTaGTATGGCATTCCTTTGCTA | + |
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Preference number: 2 (lower is better) Translates to: QHDSITYAFTFPQISKISGTIRW*YGIPLL Trigger: TAGCAAAGGAATGCCATATCACCACCTGATAGTACC...GCTTATTTTACTGATCTGAGGGAAGGTGAAGGCATATGTTATAGAGTCATGTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122064.8 |
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| 3UTR-3UTR TCA 90 bp | CAACATGACTCTATAACATATGCCTTCACCTTCCCTCAGATCAGTAAAATAAGCGCCATCTTAACATTTTaGTCTCACATGCCACGAACA | + |
|
Preference number: 2 (lower is better) Translates to: QHDSITYAFTFPQISKISAILTF*SHMPRT Trigger: TGTTCGTGGCATGTGAGATCAAAATGTTAAGATGGC...GCTTATTTTACTGATCTGAGGGAAGGTGAAGGCATATGTTATAGAGTCATGTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000122064.8 |
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| 3UTR-3UTR CCA 90 bp | TACCATGCAAAGCTTGTTAATTCCAGAAATTTCCCCAGAGCTCTAGCCATCTTATCTTCTTTCCACCCTTaGAGTTTAGAAGCTGAAGAT | + |
|
Preference number: 2 (lower is better) Translates to: YHAKLVNSRNFPRALAILSSFHP*SLEAED Trigger: ATCTTCAGCTTCTAAACTCCAAGGGTGGAAAGAAGA...TAAGATGGCTAGAGCTCTGGGGAAATTTCTGGAATTAACAAGCTTTGCATGGTA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122064.8 |
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| 3UTR CAA 90 bp | TTTTGCTATCCTTCTCACAGAACAATAGGGAGAAATCCATGGGAGTaGTATATGTGCTTGCTTGATACCTTTGATAAGATGCAGCTCAAA | + |
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Preference number: 2 (lower is better) Translates to: FCYPSHRTIGRNPWE*YMCLLDTFDKMQLK Trigger: TTTGAGCTGCATCTTATCAAAGGTATCAAGCAAGCACATATACAACTCCCATGGATTTCTCCCTATTGTTCTGTGAGAAGGATAGCAAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122064.8 |
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| 3UTR-3UTR TCA 90 bp | TACCATGCAAAGCTTGTTAATTCCAGAAATTTCCCCAGAGCTCTAGCCATCTTAGGAAACAATAAATACTaGCACTGGCTAACACAAGAA | + |
|
Preference number: 2 (lower is better) Translates to: YHAKLVNSRNFPRALAILGNNKY*HWLTQE Trigger: TTCTTGTGTTAGCCAGTGTCAGTATTTATTGTTTCC...TAAGATGGCTAGAGCTCTGGGGAAATTTCTGGAATTAACAAGCTTTGCATGGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122064.8 |
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| 3UTR-3UTR CCA 90 bp | TTAACACACTTGCAAAACTCTTCCTGTGTTAACACAGTGGGAAACAATAAATACTCTTCTTTCCACCCTTaGAGTTTAGAAGCTGAAGAT | + |
|
Preference number: 2 (lower is better) Translates to: LTHLQNSSCVNTVGNNKYSSFHP*SLEAED Trigger: ATCTTCAGCTTCTAAACTCCAAGGGTGGAAAGAAGA...GTATTTATTGTTTCCCACTGTGTTAACACAGGAAGAGTTTTGCAAGTGTGTTAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000119475.6 ENSMUST00000122064.8 |
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| 3UTR GCA 72 bp | CCAATGCTTGCCACAATTATGGGGCTACAATGCCAGTaGCACACGAGCCGTGATGTTGAGCATGCTGAGTAC | + |
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Preference number: 3 (lower is better) Translates to: PMLATIMGLQCQ*HTSRDVEHAEY Trigger: GTACTCAGCATGCTCAACATCACGGCTCGTGTGGCACTGGCATTGTAGCCCCATAATTGTGGCAAGCATTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122064.8 |
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| 3UTR GCA 72 bp | TCCAACCCAATGCTTGCCACAATTATGGGGCTACAATaGCAGTGCCACACGAGCCGTGATGTTGAGCATGCT | + |
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Preference number: 3 (lower is better) Translates to: SNPMLATIMGLQ*QCHTSRDVEHA Trigger: AGCATGCTCAACATCACGGCTCGTGTGGCACTGGCATTGTAGCCCCATAATTGTGGCAAGCATTGGGTTGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122064.8 |
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| 3UTR CCA 72 bp | AGTCCTCATATTCCAACCCAATGCTTGCCACAATTATaGGGCTACAATGCCAGTGCCACACGAGCCGTGATG | + |
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Preference number: 3 (lower is better) Translates to: SPHIPTQCLPQL*GYNASATRAVM Trigger: CATCACGGCTCGTGTGGCACTGGCATTGTAGCCCCATAATTGTGGCAAGCATTGGGTTGGAATATGAGGACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000122064.8 |
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| 3UTR-3UTR CAA 90 bp | ACAGGTGACTGGTGTAGACTGGTGAGAAGACTGGAAATTGTGTTGGTTCCTCAGGATGAAGCATATTTATaGCCCAGGTGTAGGGAGGAT | + |
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Preference number: 3 (lower is better) Translates to: TGDWCRLVRRLEIVLVPQDEAYL*PRCRED Trigger: ATCCTCCCTACACCTGGGCAATAAATATGCTTCATC...CTGAGGAACCAACACAATTTCCAGTCTTCTCACCAGTCTACACCAGTCACCTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000119475.6 ENSMUST00000122064.8 |
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| 3UTR TCA 72 bp | ATTCCTTTGCTAAGACAGGTGACTGGTGTAGACTGGTaGGAAGACTGGAAATTGTGTTGGTTCCTCAGGACT | + |
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Preference number: 3 (lower is better) Translates to: IPLLRQVTGVDW*EDWKLCWFLRT Trigger: AGTCCTGAGGAACCAACACAATTTCCAGTCTTCTCACCAGTCTACACCAGTCACCTGTCTTAGCAAAGGAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000119475.6 ENSMUST00000122064.8 |
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| 3UTR CCA 72 bp | GTGGTGATATGGCATTCCTTTGCTAAGACAGGTGACTaGTGTAGACTGGTGAGAAGACTGGAAATTGTGTTG | + |
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Preference number: 3 (lower is better) Translates to: VVIWHSFAKTGD*CRLVRRLEIVL Trigger: CAACACAATTTCCAGTCTTCTCACCAGTCTACACCAGTCACCTGTCTTAGCAAAGGAATGCCATATCACCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000119475.6 ENSMUST00000122064.8 |
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| 3UTR TCA 72 bp | GAGATATCCAGAGCTCTTTATGGTACTATCAGGTGGTaGTATGGCATTCCTTTGCTAAGACAGGTGACTGGT | + |
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Preference number: 3 (lower is better) Translates to: EISRALYGTIRW*YGIPLLRQVTG Trigger: ACCAGTCACCTGTCTTAGCAAAGGAATGCCATATCACCACCTGATAGTACCATAAAGAGCTCTGGATATCTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000119475.6 ENSMUST00000122064.8 |
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| 3UTR TCA 72 bp | AGAAATTTCCCCAGAGCTCTAGCCATCTTAACATTTTaGTCTCACATGCCACGAACATGGTCAAGGTTGATC | + |
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Preference number: 3 (lower is better) Translates to: RNFPRALAILTF*SHMPRTWSRLI Trigger: GATCAACCTTGACCATGTTCGTGGCATGTGAGATCAAAATGTTAAGATGGCTAGAGCTCTGGGGAAATTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000122064.8 |
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| 3UTR TCA 72 bp | AGATGCAGCTCAAATATTAGGAATGTAAAGTCAAAGTaGTTACATGACCCTACAGCTGAAAGGTTTCACTAT | + |
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Preference number: 3 (lower is better) Translates to: RCSSNIRNVKSK*LHDPTAERFHY Trigger: ATAGTGAAACCTTTCAGCTGTAGGGTCATGTAATCACTTTGACTTTACATTCCTAATATTTGAGCTGCATCT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000122064.8 |
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| 3UTR CCA 72 bp | TCTTTCCCTTTACTACTGGCTTATACTTTAGTCCTTTaGTCCTTTGGTGCTTTTTATAGATGTTCTTTGCAT | + |
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Preference number: 3 (lower is better) Translates to: SFPLLLAYTLVL*SFGAFYRCSLH Trigger: ATGCAAAGAACATCTATAAAAAGCACCAAAGGACCAAAGGACTAAAGTATAAGCCAGTAGTAAAGGGAAAGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000122064.8 |
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| CDS-3UTR CCA 90 bp | ACAGGTGACTGGTGTAGACTGGTGAGAAGACTGGAAATTGTGTTGGTTCCTCAGCAGAGGCTTTTGTTGTaGAAGTTTCTGCCGGTGTTG | + |
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Preference number: 4 (lower is better) Translates to: TGDWCRLVRRLEIVLVPQQRLLL*KFLPVL Trigger: CAACACCGGCAGAAACTTCCACAACAAAAGCCTCTG...CTGAGGAACCAACACAATTTCCAGTCTTCTCACCAGTCTACACCAGTCACCTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000119475.6 ENSMUST00000122064.8 |
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| CDS-3UTR CCA 90 bp | TGTTGGTTCCTCAGGACTTTTTCTTCTTTCCACCCTTGGAGTTTAGAAGCTGAATTGCCGTCCTCACTGTaGCAGAGACTGTTGGACAAA | + |
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Preference number: 4 (lower is better) Translates to: CWFLRTFSSFHPWSLEAELPSSL*QRLLDK Trigger: TTTGTCCAACAGTCTCTGCCACAGTGAGGACGGCAA...TTCAGCTTCTAAACTCCAAGGGTGGAAAGAAGAAAAAGTCCTGAGGAACCAACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000119475.6 ENSMUST00000122064.8 |
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| CDS-3UTR CCA 90 bp | CCTTGGAGTTTAGAAGCTGAAGATGAAGCATATTTATTGCCCAGGTGTAGGGAGTTCTCAGTCTTGTTCTaGGAACCTGGTAGCGTTGAA | + |
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Preference number: 4 (lower is better) Translates to: PWSLEAEDEAYLLPRCREFSVLF*EPGSVE Trigger: TTCAACGCTACCAGGTTCCCAGAACAAGACTGAGAA...CTCCCTACACCTGGGCAATAAATATGCTTCATCTTCAGCTTCTAAACTCCAAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000122064.8 |
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| CDS-3UTR TCA 90 bp | AAGCTGAAGATGAAGCATATTTATTGCCCAGGTGTAGGGAGGATCCATCACGATAAGGCATCCAGTAGTTaGGTAGTAATCTTGTTCTGG | + |
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Preference number: 4 (lower is better) Translates to: KLKMKHIYCPGVGRIHHDKASSS*VVILFW Trigger: CCAGAACAAGATTACTACTCAACTACTGGATGCCTT...ATCGTGATGGATCCTCCCTACACCTGGGCAATAAATATGCTTCATCTTCAGCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119475.6 |
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| CDS-3UTR TCA 90 bp | CACACTTGCAAAACTCTTCCTGTGTTAACACAGTGGGAAACAATAAATACTGACATAGGAGGGGGTGGTTaGTGGAGTGGTTGCAATCTT | + |
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Preference number: 4 (lower is better) Translates to: HTCKTLPVLTQWETINTDIGGGG*WSGCNL Trigger: AAGATTGCAACCACTCCATCAACCACCCCCTCCTAT...GTCAGTATTTATTGTTTCCCACTGTGTTAACACAGGAAGAGTTTTGCAAGTGTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000119475.6 ENSMUST00000122064.8 |
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| CDS-3UTR TCA 90 bp | CAACATGACTCTATAACATATGCCTTCACCTTCCCTCAGATCAGTAAAATAAGCATAGGAGGGGGTGGTTaGTGGAGTGGTTGCAATCTT | + |
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Preference number: 4 (lower is better) Translates to: QHDSITYAFTFPQISKISIGGGG*WSGCNL Trigger: AAGATTGCAACCACTCCATCAACCACCCCCTCCTAT...GCTTATTTTACTGATCTGAGGGAAGGTGAAGGCATATGTTATAGAGTCATGTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000122064.8 |
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| CDS-3UTR TCA 90 bp | TGTTGGTTCCTCAGGACTTTTTCTTCTTTCCACCCTTGGAGTTTAGAAGCTGAATGTTCGCCAGACTCATaGGAGATTGTCTTAACAGTG | + |
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Preference number: 4 (lower is better) Translates to: CWFLRTFSSFHPWSLEAECSPDS*EIVLTV Trigger: CACTGTTAAGACAATCTCTCATGAGTCTGGCGAACA...TTCAGCTTCTAAACTCCAAGGGTGGAAAGAAGAAAAAGTCCTGAGGAACCAACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000119475.6 ENSMUST00000122064.8 |
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| CDS-3UTR TCA 90 bp | GAGAAGACTGGAAATTGTGTTGGTTCCTCAGGACTTTTTCTTCTTTCCACCCTTTGTTCGCCAGACTCATaGGAGATTGTCTTAACAGTG | + |
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Preference number: 4 (lower is better) Translates to: EKTGNCVGSSGLFLLSTLCSPDS*EIVLTV Trigger: CACTGTTAAGACAATCTCTCATGAGTCTGGCGAACA...AAGGGTGGAAAGAAGAAAAAGTCCTGAGGAACCAACACAATTTCCAGTCTTCTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000119475.6 ENSMUST00000122064.8 |
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| CDS-3UTR CCA 90 bp | AAGCTGAAGATGAAGCATATTTATTGCCCAGGTGTAGGGAGGATCCATCACGATAGTTTCTGCCGGTGTTaGAATAGAGTCATTCTGAAC | + |
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Preference number: 4 (lower is better) Translates to: KLKMKHIYCPGVGRIHHDSFCRC*NRVILN Trigger: GTTCAGAATGACTCTATTCCAACACCGGCAGAAACT...ATCGTGATGGATCCTCCCTACACCTGGGCAATAAATATGCTTCATCTTCAGCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000119475.6 ENSMUST00000122064.8 |
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| CDS-3UTR CCA 90 bp | TGTTGGTTCCTCAGGACTTTTTCTTCTTTCCACCCTTGGAGTTTAGAAGCTGAACTTGAAGCAGTGACATaGTGTGTGCAGTTGTTAGAG | + |
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Preference number: 4 (lower is better) Translates to: CWFLRTFSSFHPWSLEAELEAVT*CVQLLE Trigger: CTCTAACAACTGCACACACCATGTCACTGCTTCAAG...TTCAGCTTCTAAACTCCAAGGGTGGAAAGAAGAAAAAGTCCTGAGGAACCAACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000119475.6 ENSMUST00000122064.8 |
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| 3UTR CAA 72 bp | CAGAAATTTCCCCAGAGCTCTAGCCATCTTAACATTTaGATCTCACATGCCACGAACATGGTCAAGGTTGAT | + |
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Preference number: 4 (lower is better) Translates to: QKFPQSSSHLNI*ISHATNMVKVD Trigger: ATCAACCTTGACCATGTTCGTGGCATGTGAGATCAAAATGTTAAGATGGCTAGAGCTCTGGGGAAATTTCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000122064.8 |
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| CDS-3UTR CCA 90 bp | TGTTGGTTCCTCAGGACTTTTTCTTCTTTCCACCCTTGGAGTTTAGAAGCTGAAAGTTTCTGCCGGTGTTaGAATAGAGTCATTCTGAAC | + |
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Preference number: 4 (lower is better) Translates to: CWFLRTFSSFHPWSLEAESFCRC*NRVILN Trigger: GTTCAGAATGACTCTATTCCAACACCGGCAGAAACT...TTCAGCTTCTAAACTCCAAGGGTGGAAAGAAGAAAAAGTCCTGAGGAACCAACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000119475.6 ENSMUST00000122064.8 |
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| CDS-3UTR CCA 90 bp | GAGAAGACTGGAAATTGTGTTGGTTCCTCAGGACTTTTTCTTCTTTCCACCCTTGTAGTAATCTTGTTCTaGGAACCTGGTAGCGTTGAA | + |
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Preference number: 4 (lower is better) Translates to: EKTGNCVGSSGLFLLSTLVVILF*EPGSVE Trigger: TTCAACGCTACCAGGTTCCCAGAACAAGATTACTAC...AAGGGTGGAAAGAAGAAAAAGTCCTGAGGAACCAACACAATTTCCAGTCTTCTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119475.6 |
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| CDS-3UTR CCA 90 bp | GATGTTGAGCATGCTGAGTACAGCCATTCTTTATTAAAGGAAACATTTCTAGTTTTGCCGTCCTCACTGTaGCAGAGACTGTTGGACAAA | + |
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Preference number: 4 (lower is better) Translates to: DVEHAEYSHSLLKETFLVLPSSL*QRLLDK Trigger: TTTGTCCAACAGTCTCTGCCACAGTGAGGACGGCAA...AACTAGAAATGTTTCCTTTAATAAAGAATGGCTGTACTCAGCATGCTCAACATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000119475.6 ENSMUST00000122064.8 |
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| CDS-3UTR TCA 90 bp | GGTGCTTTTTATAGATGTTCTTTGCATATACTGATGAGTCCTCATATTCCAACCGTTCTGATTGAACTCTaGTTCTCAGTCTTGTTCTGG | + |
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Preference number: 4 (lower is better) Translates to: GAFYRCSLHILMSPHIPTVLIEL*FSVLFW Trigger: CCAGAACAAGACTGAGAATCAGAGTTCAATCAGAAC...GGTTGGAATATGAGGACTCATCAGTATATGCAAAGAACATCTATAAAAAGCACC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000122064.8 |
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| 3UTR CAA 72 bp | GTCCTTTGGTCCTTTGGTGCTTTTTATAGATGTTCTTaGCATATACTGATGAGTCCTCATATTCCAACCCAA | + |
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Preference number: 4 (lower is better) Translates to: VLWSFGAFYRCS*HILMSPHIPTQ Trigger: TTGGGTTGGAATATGAGGACTCATCAGTATATGCAAAGAACATCTATAAAAAGCACCAAAGGACCAAAGGAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000122064.8 |
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| CDS-3UTR TCA 90 bp | GGTGCTTTTTATAGATGTTCTTTGCATATACTGATGAGTCCTCATATTCCAACCATATTTCCGTTGTTCTaGTTGAACTCTGATTCTCAG | + |
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Preference number: 4 (lower is better) Translates to: GAFYRCSLHILMSPHIPTIFPLF*LNSDSQ Trigger: CTGAGAATCAGAGTTCAATCAGAACAACGGAAATAT...GGTTGGAATATGAGGACTCATCAGTATATGCAAAGAACATCTATAAAAAGCACC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000122064.8 |
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| 3UTR CAA 72 bp | ATCCATGGGAGTTGTATATGTGCTTGCTTGATACCTTaGATAAGATGCAGCTCAAATATTAGGAATGTAAAG | + |
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Preference number: 4 (lower is better) Translates to: IHGSCICACLIP*IRCSSNIRNVK Trigger: CTTTACATTCCTAATATTTGAGCTGCATCTTATCAAAGGTATCAAGCAAGCACATATACAACTCCCATGGAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000122064.8 |
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| CDS GCA 90 bp | CACTCTCTTTATCGGACTGAGGCTGATCATTTCCGTTTTCTGGAGTaGCTGGGTCTCTCTTCCAGCATATTCGATACAAACCCACCAGAG | + |
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Preference number: 5 (lower is better) Translates to: HSLYRTEADHFRFLE*LGLSSSIFDTNPPE Trigger: CTCTGGTGGGTTTGTATCGAATATGCTGGAAGAGAGACCCAGGCACTCCAGAAAACGGAAATGATCAGCCTCAGTCCGATAAAGAGAGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000119475.6 ENSMUST00000122064.8 ENSMUST00000197511.2 |
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| CDS TCA 90 bp | GGGGTGGTTGATGGAGTGGTTGCAATCTTCCTATCCTCAGTATCTTaGAGCAGTGACATGGTGTGTGCAGTTGTTAGAGATGCAGAGGAT | + |
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Preference number: 5 (lower is better) Translates to: GVVDGVVAIFLSSVS*SSDMVCAVVRDAED Trigger: ATCCTCTGCATCTCTAACAACTGCACACACCATGTCACTGCTTCAAGATACTGAGGATAGGAAGATTGCAACCACTCCATCAACCACCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000119475.6 ENSMUST00000122064.8 ENSMUST00000197511.2 |
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| CDS GCA 90 bp | CACGATGCCTGGTATTGTGACAGAGGCTTTTGTTGTGGAAGTTTCTaGCGGTGTTGGAATAGAGTCATTCTGAACATCTTTGCCGTCCTC | + |
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Preference number: 5 (lower is better) Translates to: HDAWYCDRGFCCGSF*RCWNRVILNIFAVL Trigger: GAGGACGGCAAAGATGTTCAGAATGACTCTATTCCAACACCGGCAGAAACTTCCACAACAAAAGCCTCTGTCACAATACCAGGCATCGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000119475.6 ENSMUST00000122064.8 ENSMUST00000197511.2 |
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| CDS CCA 90 bp | TGGTATTGTGACAGAGGCTTTTGTTGTGGAAGTTTCTGCCGGTGTTaGAATAGAGTCATTCTGAACATCTTTGCCGTCCTCACTGTGGCA | + |
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Preference number: 5 (lower is better) Translates to: WYCDRGFCCGSFCRC*NRVILNIFAVLTVA Trigger: TGCCACAGTGAGGACGGCAAAGATGTTCAGAATGACTCTATTCCAACACCGGCAGAAACTTCCACAACAAAAGCCTCTGTCACAATACCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000119475.6 ENSMUST00000122064.8 ENSMUST00000197511.2 |
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| CDS-3UTR CAA 90 bp | CATGCCACGAACATGGTCAAGGTTGATCAAGGTTTCAAGAGTGGAATCTGTTCTAATAGGAGGGGGTGGTaGATGGAGTGGTTGCAATCT | + |
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Preference number: 5 (lower is better) Translates to: HATNMVKVDQGFKSGICSNRRGW*MEWLQS Trigger: AGATTGCAACCACTCCATCAACCACCCCCTCCTATT...AGAACAGATTCCACTCTTGAAACCTTGATCAACCTTGACCATGTTCGTGGCATG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000122064.8 |
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| CDS-3UTR CAA 90 bp | CCTTGGAGTTTAGAAGCTGAAGATGAAGCATATTTATTGCCCAGGTGTAGGGAGACATGGTGTGTGCAGTaGTTAGAGATGCAGAGGATG | + |
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Preference number: 5 (lower is better) Translates to: PWSLEAEDEAYLLPRCRETWCVQ*LEMQRM Trigger: CATCCTCTGCATCTCTAACAACTGCACACACCATGT...CTCCCTACACCTGGGCAATAAATATGCTTCATCTTCAGCTTCTAAACTCCAAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000119475.6 ENSMUST00000122064.8 |
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| CDS-3UTR CAA 90 bp | CATGCCACGAACATGGTCAAGGTTGATCAAGGTTTCAAGAGTGGAATCTGTTCTTGGTTGATGGAGTGGTaGCAATCTTCCTATCCTCAG | + |
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Preference number: 5 (lower is better) Translates to: HATNMVKVDQGFKSGICSWLMEW*QSSYPQ Trigger: CTGAGGATAGGAAGATTGCAACCACTCCATCAACCA...AGAACAGATTCCACTCTTGAAACCTTGATCAACCTTGACCATGTTCGTGGCATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000122064.8 |
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| CDS-3UTR CAA 90 bp | GATGTTGAGCATGCTGAGTACAGCCATTCTTTATTAAAGGAAACATTTCTAGTTAATAGGAGGGGGTGGTaGATGGAGTGGTTGCAATCT | + |
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Preference number: 5 (lower is better) Translates to: DVEHAEYSHSLLKETFLVNRRGW*MEWLQS Trigger: AGATTGCAACCACTCCATCAACCACCCCCTCCTATT...AACTAGAAATGTTTCCTTTAATAAAGAATGGCTGTACTCAGCATGCTCAACATC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000119475.6 ENSMUST00000122064.8 |
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| CDS TCA 90 bp | GGGACCTTCAGTTGTTGTTCCCACTTCATGTTTTGGTGTTGTCAGTaGATTAATTGTTGTCACCAAAGATGTTTGGGATACGTCACTTTT | + |
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Preference number: 5 (lower is better) Translates to: GTFSCCSHFMFWCCQ*INCCHQRCLGYVTF Trigger: AAAAGTGACGTATCCCAAACATCTTTGGTGACAACAATTAATTCACTGACAACACCAAAACATGAAGTGGGAACAACAACTGAAGGTCCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000119475.6 ENSMUST00000122064.8 |
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| CDS-3UTR CAA 90 bp | GATGTTGAGCATGCTGAGTACAGCCATTCTTTATTAAAGGAAACATTTCTAGTTTGGTTGATGGAGTGGTaGCAATCTTCCTATCCTCAG | + |
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Preference number: 5 (lower is better) Translates to: DVEHAEYSHSLLKETFLVWLMEW*QSSYPQ Trigger: CTGAGGATAGGAAGATTGCAACCACTCCATCAACCA...AACTAGAAATGTTTCCTTTAATAAAGAATGGCTGTACTCAGCATGCTCAACATC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000119475.6 ENSMUST00000122064.8 |
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| CDS TCA 72 bp | TTGGTTTTCCCCTGTGCAGAGTGTTCGCCAGACTCATaGGAGATTGTCTTAACAGTGAGCAGCTTCACACTC | + |
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Preference number: 6 (lower is better) Translates to: LVFPCAECSPDS*EIVLTVSSFTL Trigger: GAGTGTGAAGCTGCTCACTGTTAAGACAATCTCTCATGAGTCTGGCGAACACTCTGCACAGGGGAAAACCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000119475.6 ENSMUST00000122064.8 |
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| CDS TCA 72 bp | CACAGGCAAAATGATACTGGAATAGGAGGGGGTGGTTaGTGGAGTGGTTGCAATCTTCCTATCCTCAGTATC | + |
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Preference number: 6 (lower is better) Translates to: HRQNDTGIGGGG*WSGCNLPILSI Trigger: GATACTGAGGATAGGAAGATTGCAACCACTCCATCAACCACCCCCTCCTATTCCAGTATCATTTTGCCTGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000119475.6 ENSMUST00000122064.8 ENSMUST00000197511.2 |
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| CDS CCA 72 bp | GAACATCTTTGCCGTCCTCACTGTGGCAGAGACTGTTaGACAAAAGGAAGAAAAGAACAGTCGCTTGAAGCA | + |
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Preference number: 6 (lower is better) Translates to: EHLCRPHCGRDC*TKGRKEQSLEA Trigger: TGCTTCAAGCGACTGTTCTTTTCTTCCTTTTGTCCAACAGTCTCTGCCACAGTGAGGACGGCAAAGATGTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000119475.6 ENSMUST00000122064.8 ENSMUST00000197511.2 |
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| CDS CCA 72 bp | GACAGAGGCTTTTGTTGTGGAAGTTTCTGCCGGTGTTaGAATAGAGTCATTCTGAACATCTTTGCCGTCCTC | + |
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Preference number: 6 (lower is better) Translates to: DRGFCCGSFCRC*NRVILNIFAVL Trigger: GAGGACGGCAAAGATGTTCAGAATGACTCTATTCCAACACCGGCAGAAACTTCCACAACAAAAGCCTCTGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000119475.6 ENSMUST00000122064.8 ENSMUST00000197511.2 |
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| CDS CCA 72 bp | CTCTTTATCGGACTGAGGCTGATCATTTCCGTTTTCTaGAGTGCCTGGGTCTCTCTTCCAGCATATTCGATA | + |
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Preference number: 6 (lower is better) Translates to: LFIGLRLIISVF*SAWVSLPAYSI Trigger: TATCGAATATGCTGGAAGAGAGACCCAGGCACTCCAGAAAACGGAAATGATCAGCCTCAGTCCGATAAAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000119475.6 ENSMUST00000122064.8 ENSMUST00000197511.2 |
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| CDS TCA 72 bp | GATGTTGCAGTGATTTTCGGCAAGGCATCCAGTAGTTaGGTAGTAATCTTGTTCTGGGAACCTGGTAGCGTT | + |
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Preference number: 6 (lower is better) Translates to: DVAVIFGKASSS*VVILFWEPGSV Trigger: AACGCTACCAGGTTCCCAGAACAAGATTACTACTCAACTACTGGATGCCTTGCCGAAAATCACTGCAACATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119475.6 |
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| CDS TCA 72 bp | GATGGAGTGGTTGCAATCTTCCTATCCTCAGTATCTTaGAGCAGTGACATGGTGTGTGCAGTTGTTAGAGAT | + |
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Preference number: 6 (lower is better) Translates to: DGVVAIFLSSVS*SSDMVCAVVRD Trigger: ATCTCTAACAACTGCACACACCATGTCACTGCTTCAAGATACTGAGGATAGGAAGATTGCAACCACTCCATC 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000119475.6 ENSMUST00000122064.8 ENSMUST00000197511.2 |
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| CDS TCA 72 bp | GTAGTAACTGATATTTCCGTTGTTCTGATTGAACTCTaGTTCTCAGTCTTGTTCTGGGAACCTGGTAGCGTT | + |
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Preference number: 6 (lower is better) Translates to: VVTDISVVLIEL*FSVLFWEPGSV Trigger: AACGCTACCAGGTTCCCAGAACAAGACTGAGAATCAGAGTTCAATCAGAACAACGGAAATATCAGTTACTAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000122064.8 |
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| CDS GCA 72 bp | TGGTATTGTGACAGAGGCTTTTGTTGTGGAAGTTTCTaGCGGTGTTGGAATAGAGTCATTCTGAACATCTTT | + |
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Preference number: 6 (lower is better) Translates to: WYCDRGFCCGSF*RCWNRVILNIF Trigger: AAAGATGTTCAGAATGACTCTATTCCAACACCGGCAGAAACTTCCACAACAAAAGCCTCTGTCACAATACCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000119475.6 ENSMUST00000122064.8 ENSMUST00000197511.2 |
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| CDS TCA 72 bp | AGTTGTTGTTCCCACTTCATGTTTTGGTGTTGTCAGTaGATTAATTGTTGTCACCAAAGATGTTTGGGATAC | + |
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Preference number: 6 (lower is better) Translates to: SCCSHFMFWCCQ*INCCHQRCLGY Trigger: GTATCCCAAACATCTTTGGTGACAACAATTAATTCACTGACAACACCAAAACATGAAGTGGGAACAACAACT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000119475.6 ENSMUST00000122064.8 |
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| CDS TCA 72 bp | ACTCTGATTCTCAGCTTCATGTTTTGGTGTTGTCAGTaGATTAATTGTTGTCACCAAAGATGTTTGGGATAC | + |
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Preference number: 6 (lower is better) Translates to: TLILSFMFWCCQ*INCCHQRCLGY Trigger: GTATCCCAAACATCTTTGGTGACAACAATTAATTCACTGACAACACCAAAACATGAAGCTGAGAATCAGAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197511.2 |
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| CDS TCA 72 bp | GTAGTAACTGATATTTCCGTTGTTCTGATTGAACTCTaGTTCTCAGCTTCATGTTTTGGTGTTGTCAGTGAA | + |
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Preference number: 6 (lower is better) Translates to: VVTDISVVLIEL*FSASCFGVVSE Trigger: TTCACTGACAACACCAAAACATGAAGCTGAGAATCAGAGTTCAATCAGAACAACGGAAATATCAGTTACTAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000197511.2 |
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