Pregenerated sensors for EMC9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022217Ensembl transcript IDs: ENSMUST00000022828.9, ENSMUST00000174352.8
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | AGAGGCATTCTCCGGACCCCGTCGCGGGAGCCAGCAACAACCCGTTaGCAGCAGCGTGTGGGTACCGAGAGGCGTGCAGACACATCTTCC | + |
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Preference number: 5 (lower is better) Translates to: RGILRTPSREPATTR*QQRVGTERRADTSS Trigger: GGAAGATGTGTCTGCACGCCTCTCGGTACCCACACGCTGCTGTCAACGGGTTGTTGCTGGCTCCCGCGACGGGGTCCGGAGAATGCCTCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022828.9 |
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| CDS CCA 90 bp | CCTCCCAATCTCTCCACATCACTCTCTGGTCATCCAAAACCGCATTaGCATGGTAGTACCCAGCTACCACCAGACCGGCCTGCGCGCCCC | + |
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Preference number: 5 (lower is better) Translates to: PPNLSTSLSGHPKPH*HGSTQLPPDRPARP Trigger: GGGGCGCGCAGGCCGGTCTGGTGGTAGCTGGGTACTACCATGCCAATGCGGTTTTGGATGACCAGAGAGTGATGTGGAGAGATTGGGAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174352.8 |
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| CDS TCA 90 bp | ATGCTGGTGAGCCCGGCCCTCCAACAGCGCACCCACCATCTGTCGTaGCTCCTCCCAATCTCTCCACATCACTCTCTGGTCATCCAAAAC | + |
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Preference number: 5 (lower is better) Translates to: MLVSPALQQRTHHLS*LLPISPHHSLVIQN Trigger: GTTTTGGATGACCAGAGAGTGATGTGGAGAGATTGGGAGGAGTCACGACAGATGGTGGGTGCGCTGTTGGAGGGCCGGGCTCACCAGCAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174352.8 |
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| CDS TCA 90 bp | TCCCAATCTCTCCACATCACTAAGTTCTTGTCCTTGGGCACCCACTaGAGACCCTGGTTCTCCAGGACAATGACTGGAGGTACACGAGGC | + |
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Preference number: 5 (lower is better) Translates to: SQSLHITKFLSLGTH*RPWFSRTMTGGTRG Trigger: GCCTCGTGTACCTCCAGTCATTGTCCTGGAGAACCAGGGTCTTCAGTGGGTGCCCAAGGACAAGAACTTAGTGATGTGGAGAGATTGGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022828.9 |
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| CDS CCA 90 bp | GTCCTTGGGCACCCACTGAAGACCCTGGTTCTCCAGGACAATGACTaGAGGTACACGAGGCCGAGTCACCAATTTCTTATTATCCAGCAT | + |
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Preference number: 5 (lower is better) Translates to: VLGHPLKTLVLQDND*RYTRPSHQFLIIQH Trigger: ATGCTGGATAATAAGAAATTGGTGACTCGGCCTCGTGTACCTCCAGTCATTGTCCTGGAGAACCAGGGTCTTCAGTGGGTGCCCAAGGAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022828.9 |
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| CDS TCA 90 bp | TCTTGTCCTTGGGCACCCACTGAAGACCCTGGTTCTCCAGGACAATaGCTGGAGGTACACGAGGCCGAGTCACCAATTTCTTATTATCCA | + |
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Preference number: 5 (lower is better) Translates to: SCPWAPTEDPGSPGQ*LEVHEAESPISYYP Trigger: TGGATAATAAGAAATTGGTGACTCGGCCTCGTGTACCTCCAGTCATTGTCCTGGAGAACCAGGGTCTTCAGTGGGTGCCCAAGGACAAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022828.9 |
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| CDS GCA 90 bp | ACGAGGCCGAGTCACCAATTTCTTATTATCCAGCATAATAAGCACTaGCCTGGGGAAGAATTCTGCAATTCGCCCAGCGATTTTCAAGGC | + |
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Preference number: 5 (lower is better) Translates to: TRPSHQFLIIQHNKH*PGEEFCNSPSDFQG Trigger: GCCTTGAAAATCGCTGGGCGAATTGCAGAATTCTTCCCCAGGGCAGTGCTTATTATGCTGGATAATAAGAAATTGGTGACTCGGCCTCGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022828.9 |
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| CDS TCA 72 bp | CTCCGGACCCCGTCGCGGGAGCCAGCAACAACCCGTTaGCAGCAGCGTGTGGGTACCGAGAGGCGTGCAGAC | + |
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Preference number: 6 (lower is better) Translates to: LRTPSREPATTR*QQRVGTERRAD Trigger: GTCTGCACGCCTCTCGGTACCCACACGCTGCTGTCAACGGGTTGTTGCTGGCTCCCGCGACGGGGTCCGGAG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022828.9 |
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| CDS TCA 72 bp | AGGCCAGATGGCTGTGGAAGAGGGGCACACAGTCGGTaGGGCAGAGGCATTCTCCGGACCCCGTCGCGGGAG | + |
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Preference number: 6 (lower is better) Translates to: RPDGCGRGAHSR*GRGILRTPSRE Trigger: CTCCCGCGACGGGGTCCGGAGAATGCCTCTGCCTCACCGACTGTGTGCCCCTCTTCCACAGCCATCTGGCCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022828.9 |
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| CDS CAA 90 bp | CAGAGGCATTCTCCGGACCCCGTCGCGGGAGCCAGCAACAACCCGTaGACAGCAGCGTGTGGGTACCGAGAGGCGTGCAGACACATCTTC | + |
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Preference number: 6 (lower is better) Translates to: QRHSPDPVAGASNNP*TAACGYREACRHIF Trigger: GAAGATGTGTCTGCACGCCTCTCGGTACCCACACGCTGCTGTCAACGGGTTGTTGCTGGCTCCCGCGACGGGGTCCGGAGAATGCCTCTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022828.9 |
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| CDS CCA 72 bp | CCAGAGGCCCGGGGCTCTGGTCATCCAAAACCGCATTaGCATGGTAGTACCCAGCTACCACCAGACCGGCCT | + |
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Preference number: 6 (lower is better) Translates to: PEARGSGHPKPH*HGSTQLPPDRP Trigger: AGGCCGGTCTGGTGGTAGCTGGGTACTACCATGCCAATGCGGTTTTGGATGACCAGAGCCCCGGGCCTCTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022828.9 |
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| CDS TCA 72 bp | TCATCAAGATGGCAGTCAAAGTCCACAAGATGCTGGTaGGCCCGGCCCTCCAACAGCGCACCCACCATCTGT | + |
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Preference number: 6 (lower is better) Translates to: SSRWQSKSTRCW*ARPSNSAPTIC Trigger: ACAGATGGTGGGTGCGCTGTTGGAGGGCCGGGCTCACCAGCATCTTGTGGACTTTGACTGCCATCTTGATGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022828.9 ENSMUST00000174352.8 |
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| CDS TCA 72 bp | TGGGCACCCACTGAAGACCCTGGTTCTCCAGGACAATaGCTGGAGGTACACGAGGCCGAGTCACCAATTTCT | + |
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Preference number: 6 (lower is better) Translates to: WAPTEDPGSPGQ*LEVHEAESPIS Trigger: AGAAATTGGTGACTCGGCCTCGTGTACCTCCAGTCATTGTCCTGGAGAACCAGGGTCTTCAGTGGGTGCCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022828.9 |
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| CDS TCA 72 bp | CTCCACATCACTAAGTTCTTGTCCTTGGGCACCCACTaGAGACCCTGGTTCTCCAGGACAATGACTGGAGGT | + |
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Preference number: 6 (lower is better) Translates to: LHITKFLSLGTH*RPWFSRTMTGG Trigger: ACCTCCAGTCATTGTCCTGGAGAACCAGGGTCTTCAGTGGGTGCCCAAGGACAAGAACTTAGTGATGTGGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022828.9 |
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| CDS CAA 72 bp | GGCATTTCCATCTGTGGAACCACTCCATTGAGTGATTaGAGTGTTAAGCCGCTGGTTGGTCCAGTCCTGCCG | + |
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Preference number: 6 (lower is better) Translates to: GISICGTTPLSD*SVKPLVGPVLP Trigger: CGGCAGGACTGGACCAACCAGCGGCTTAACACTCAAATCACTCAATGGAGTGGTTCCACAGATGGAAATGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022828.9 ENSMUST00000174352.8 |
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| CDS GCA 72 bp | AGTCACCAATTTCTTATTATCCAGCATAATAAGCACTaGCCTGGGGAAGAATTCTGCAATTCGCCCAGCGAT | + |
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Preference number: 6 (lower is better) Translates to: SHQFLIIQHNKH*PGEEFCNSPSD Trigger: ATCGCTGGGCGAATTGCAGAATTCTTCCCCAGGGCAGTGCTTATTATGCTGGATAATAAGAAATTGGTGACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022828.9 |
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