RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for EMC6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000047260

Ensembl transcript IDs: ENSMUST00000054952.4, ENSMUST00000108480.2

Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCCTTCCAGACGAGCCACTTCTGGCAGAGACAACTAACTTCTCTGTaGTTCAGGTTTTTCATTAACAGAAAGTTAGCAGTAACATCTCCA +
Preference number: 1 (lower is better)
Translates to: PFQTSHFWQRQLTSL*FRFFINRKLAVTSP
Trigger: TGGAGATGTTACTGCTAACTTTCTGTTAATGAAAAACCTGAAGCACAGAGAAGTTAGTTGTCTCTGCCAGAAGTGGCTCGTCTGGAAGGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054952.4
3UTR TCA 90 bp GCTTGGCTAAGCAAGGAACGACAAGGTGTCACACTTCATTTAATCTaGAGAATAATATTACAGGCTCTGTCTTCAGATATAAATTATAAC +
Preference number: 1 (lower is better)
Translates to: AWLSKERQGVTLHLI*RIILQALSSDINYN
Trigger: GTTATAATTTATATCTGAAGACAGAGCCTGTAATATTATTCTTCAGATTAAATGAAGTGTGACACCTTGTCGTTCCTTGCTTAGCCAAGC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054952.4
3UTR-3UTR TCA 90 bp CAGACTTGCAACTGGACCTCGGCCCTGCCCCCTTCCAGACGAGCCACTTCTGGCAATGCCGGTACACAGTaGAAGCTTAGTAACACGAAC +
Preference number: 2 (lower is better)
Translates to: QTCNWTSALPPSRRATSGNAGTQ*KLSNTN
Trigger: GTTCGTGTTACTAAGCTTTCACTGTGTACCGGCATT...GCCAGAAGTGGCTCGTCTGGAAGGGGGCAGGGCCGAGGTCCAGTTGCAAGTCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054952.4
3UTR-3UTR GCA 90 bp CTCGGCCCTGCCCCCTTCCAGACGAGCCACTTCTGGCAGAGACAACTAACTTCTCTGTGGCCTCGTACTTaGTCTCCAGGGAGCAAATCT +
Preference number: 2 (lower is better)
Translates to: LGPAPFQTSHFWQRQLTSLWPRT*SPGSKS
Trigger: AGATTTGCTCCCTGGAGAGCAAGTACGAGGCCACAG...AGAAGTTAGTTGTCTCTGCCAGAAGTGGCTCGTCTGGAAGGGGGCAGGGCCGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054952.4
3UTR CAA 90 bp GTGCTAGAAGAGGACTCTTACCCAATCCAGCAAAAGCAAACAGACTaGCAACTGGACCTCGGCCCTGCCCCCTTCCAGACGAGCCACTTC +
Preference number: 2 (lower is better)
Translates to: VLEEDSYPIQQKQTD*QLDLGPAPFQTSHF
Trigger: GAAGTGGCTCGTCTGGAAGGGGGCAGGGCCGAGGTCCAGTTGCAAGTCTGTTTGCTTTTGCTGGATTGGGTAAGAGTCCTCTTCTAGCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054952.4
3UTR-3UTR GCA 90 bp TTAGCTGATTTCACTCACGTGGGAAAGCAGTGGTTAGTGGGAGGGGGTGCTAGACAACTAACTTCTCTGTaGTTCAGGTTTTTCATTAAC +
Preference number: 2 (lower is better)
Translates to: LADFTHVGKQWLVGGGARQLTSL*FRFFIN
Trigger: GTTAATGAAAAACCTGAAGCACAGAGAAGTTAGTTG...TCTAGCACCCCCTCCCACTAACCACTGCTTTCCCACGTGAGTGAAATCAGCTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000054952.4
3UTR-3UTR CAA 90 bp CAGACTTGCAACTGGACCTCGGCCCTGCCCCCTTCCAGACGAGCCACTTCTGGCTGGCGACTTCAAAGCTaGGCTAAGCAAGGAACGACA +
Preference number: 3 (lower is better)
Translates to: QTCNWTSALPPSRRATSGWRLQS*AKQGTT
Trigger: TGTCGTTCCTTGCTTAGCCAAGCTTTGAAGTCGCCA...GCCAGAAGTGGCTCGTCTGGAAGGGGGCAGGGCCGAGGTCCAGTTGCAAGTCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054952.4
3UTR CCA 72 bp GACCTCGGCCCTGCCCCCTTCCAGACGAGCCACTTCTaGCAGAGACAACTAACTTCTCTGTGCTTCAGGTTT +
Preference number: 3 (lower is better)
Translates to: DLGPAPFQTSHF*QRQLTSLCFRF
Trigger: AAACCTGAAGCACAGAGAAGTTAGTTGTCTCTGCCAGAAGTGGCTCGTCTGGAAGGGGGCAGGGCCGAGGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054952.4
3UTR CCA 72 bp CTTACCCAATCCAGCAAAAGCAAACAGACTTGCAACTaGACCTCGGCCCTGCCCCCTTCCAGACGAGCCACT +
Preference number: 3 (lower is better)
Translates to: LTQSSKSKQTCN*TSALPPSRRAT
Trigger: AGTGGCTCGTCTGGAAGGGGGCAGGGCCGAGGTCCAGTTGCAAGTCTGTTTGCTTTTGCTGGATTGGGTAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054952.4
3UTR GCA 72 bp AGGACTCTTACCCAATCCAGCAAAAGCAAACAGACTTaGAACTGGACCTCGGCCCTGCCCCCTTCCAGACGA +
Preference number: 3 (lower is better)
Translates to: RTLTQSSKSKQT*NWTSALPPSRR
Trigger: TCGTCTGGAAGGGGGCAGGGCCGAGGTCCAGTTGCAAGTCTGTTTGCTTTTGCTGGATTGGGTAAGAGTCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054952.4
3UTR CCA 72 bp CTGTGGCCTCGTACTTGCTCTCCAGGGAGCAAATCTTaGCGACTTCAAAGCTTGGCTAAGCAAGGAACGACA +
Preference number: 3 (lower is better)
Translates to: LWPRTCSPGSKS*RLQSLAKQGTT
Trigger: TGTCGTTCCTTGCTTAGCCAAGCTTTGAAGTCGCCAAGATTTGCTCCCTGGAGAGCAAGTACGAGGCCACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054952.4
3UTR-3UTR CAA 90 bp GATTTCACTCACGTGGGAAAGCAGTGGTTAGTGGGAGGGGGTGCTAGAAGAGGAACTCTAGAGGTCCCTTaGGACTTACTAGGCGTTAAA +
Preference number: 3 (lower is better)
Translates to: DFTHVGKQWLVGGGARRGTLEVP*DLLGVK
Trigger: TTTAACGCCTAGTAAGTCCAAAGGGACCTCTAGAGT...TCCTCTTCTAGCACCCCCTCCCACTAACCACTGCTTTCCCACGTGAGTGAAATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054952.4
3UTR TCA 72 bp ATGGCGAGAATGAAAACACACAATGCCGGTACACAGTaGAAGCTTAGTAACACGAACTGTTACCAGTTCTTA +
Preference number: 3 (lower is better)
Translates to: MARMKTHNAGTQ*KLSNTNCYQFL
Trigger: TAAGAACTGGTAACAGTTCGTGTTACTAAGCTTTCACTGTGTACCGGCATTGTGTGTTTTCATTCTCGCCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054952.4
3UTR TCA 72 bp AAGTTAGCAGTAACATCTCCATTGCTATGGCGAGAATaGAAACACACAATGCCGGTACACAGTGAAAGCTTA +
Preference number: 3 (lower is better)
Translates to: KLAVTSPLLWRE*KHTMPVHSESL
Trigger: TAAGCTTTCACTGTGTACCGGCATTGTGTGTTTTCATTCTCGCCATAGCAATGGAGATGTTACTGCTAACTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054952.4
3UTR TCA 72 bp AGCAAGGAACGACAAGGTGTCACACTTCATTTAATCTaGAGAATAATATTACAGGCTCTGTCTTCAGATATA +
Preference number: 3 (lower is better)
Translates to: SKERQGVTLHLI*RIILQALSSDI
Trigger: TATATCTGAAGACAGAGCCTGTAATATTATTCTTCAGATTAAATGAAGTGTGACACCTTGTCGTTCCTTGCT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054952.4
CDS-3UTR GCA 90 bp CCTCGGCCCTGCCCCCTTCCAGACGAGCCACTTCTGGCAGAGACAACTAACTTCGTTGCCTCGCACGGCTaGCTCGCTGATGAACGGCGG +
Preference number: 4 (lower is better)
Translates to: PRPCPLPDEPLLAETTNFVASHG*LADERR
Trigger: CCGCCGTTCATCAGCGAGGCAGCCGTGCGAGGCAAC...GAAGTTAGTTGTCTCTGCCAGAAGTGGCTCGTCTGGAAGGGGGCAGGGCCGAGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054952.4
CDS-3UTR CCA 90 bp GATTTCACTCACGTGGGAAAGCAGTGGTTAGTGGGAGGGGGTGCTAGAAGAGGACGAGGATGCCGGCGGTaGCCCCGGACAGCGCTGACA +
Preference number: 4 (lower is better)
Translates to: DFTHVGKQWLVGGGARRGRGCRR*PRTALT
Trigger: TGTCAGCGCTGTCCGGGGCCACCGCCGGCATCCTCG...TCCTCTTCTAGCACCCCCTCCCACTAACCACTGCTTTCCCACGTGAGTGAAATC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054952.4
3UTR CAA 72 bp GAGGACTCTTACCCAATCCAGCAAAAGCAAACAGACTaGCAACTGGACCTCGGCCCTGCCCCCTTCCAGACG +
Preference number: 4 (lower is better)
Translates to: EDSYPIQQKQTD*QLDLGPAPFQT
Trigger: CGTCTGGAAGGGGGCAGGGCCGAGGTCCAGTTGCAAGTCTGTTTGCTTTTGCTGGATTGGGTAAGAGTCCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054952.4
CDS-3UTR GCA 90 bp TGTCCACATAACCTAATCGCCAGAGGACAACGATTTAGAAAAATAGCTTGCATTAGTAGACGTGCACCATaGCATAGAGGAAGGTCCAAA +
Preference number: 4 (lower is better)
Translates to: CPHNLIARGQRFRKIACISRRAP*HRGRSK
Trigger: TTTGGACCTTCCTCTATGGCATGGTGCACGTCTACT...AATGCAAGCTATTTTTCTAAATCGTTGTCCTCTGGCGATTAGGTTATGTGGACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054952.4
CDS-3UTR CAA 90 bp GATTTCACTCACGTGGGAAAGCAGTGGTTAGTGGGAGGGGGTGCTAGAAGAGGACACCTCCTTCCCGCTTaGAGAATGAGGAGCAGGGAG +
Preference number: 5 (lower is better)
Translates to: DFTHVGKQWLVGGGARRGHLLPA*RMRSRE
Trigger: CTCCCTGCTCCTCATTCTCAAAGCGGGAAGGAGGTG...TCCTCTTCTAGCACCCCCTCCCACTAACCACTGCTTTCCCACGTGAGTGAAATC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054952.4
CDS-3UTR CAA 90 bp CTCGGCCCTGCCCCCTTCCAGACGAGCCACTTCTGGCAGAGACAACTAACTTCTCGTGACTTAAAATATTaGTTCCACCTCCTTCCCGCT +
Preference number: 5 (lower is better)
Translates to: LGPAPFQTSHFWQRQLTSRDLKY*FHLLPA
Trigger: AGCGGGAAGGAGGTGGAACAAATATTTTAAGTCACG...AGAAGTTAGTTGTCTCTGCCAGAAGTGGCTCGTCTGGAAGGGGGCAGGGCCGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054952.4
CDS TCA 90 bp GGTGAAGAGGCCTCCAATGAGGCCTCCCGTAAAGAGAGGTCTTCGTaGCTTAAAATATTTGTTCCACCTCCTTCCCGCTTTGAGAATGAG +
Preference number: 5 (lower is better)
Translates to: GEEASNEASRKERSS*LKIFVPPPSRFENE
Trigger: CTCATTCTCAAAGCGGGAAGGAGGTGGAACAAATATTTTAAGTCACGAAGACCTCTCTTTACGGGAGGCCTCATTGGAGGCCTCTTCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054952.4
ENSMUST00000108480.2
CDS GCA 72 bp GCAGTAATCCAGGACCGCGGCGTTGCCTCGCACGGCTaGCTCGCTGATGAACGGCGGCCCTTCCCGCTTGGC +
Preference number: 6 (lower is better)
Translates to: AVIQDRGVASHG*LADERRPFPLG
Trigger: GCCAAGCGGGAAGGGCCGCCGTTCATCAGCGAGGCAGCCGTGCGAGGCAACGCCGCGGTCCTGGATTACTGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054952.4
ENSMUST00000108480.2
CDS CAA 72 bp CGTGACTTAAAATATTTGTTCCACCTCCTTCCCGCTTaGAGAATGAGGAGCAGGGAGAGCAGGACGGAGGCA +
Preference number: 6 (lower is better)
Translates to: RDLKYLFHLLPA*RMRSRESRTEA
Trigger: TGCCTCCGTCCTGCTCTCCCTGCTCCTCATTCTCAAAGCGGGAAGGAGGTGGAACAAATATTTTAAGTCACG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054952.4
ENSMUST00000108480.2
CDS CAA 90 bp CCAATGAGGCCTCCCGTAAAGAGAGGTCTTCGTGACTTAAAATATTaGTTCCACCTCCTTCCCGCTTTGAGAATGAGGAGCAGGGAGAGC +
Preference number: 6 (lower is better)
Translates to: PMRPPVKRGLRDLKY*FHLLPALRMRSRES
Trigger: GCTCTCCCTGCTCCTCATTCTCAAAGCGGGAAGGAGGTGGAACAAATATTTTAAGTCACGAAGACCTCTCTTTACGGGAGGCCTCATTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054952.4
ENSMUST00000108480.2
CDS TCA 72 bp GCCTCCAATGAGGCCTCCCGTAAAGAGAGGTCTTCGTaGCTTAAAATATTTGTTCCACCTCCTTCCCGCTTT +
Preference number: 6 (lower is better)
Translates to: ASNEASRKERSS*LKIFVPPPSRF
Trigger: AAAGCGGGAAGGAGGTGGAACAAATATTTTAAGTCACGAAGACCTCTCTTTACGGGAGGCCTCATTGGAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054952.4
ENSMUST00000108480.2