Pregenerated sensors for EMC3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030286Ensembl transcript IDs: ENSMUST00000032425.7
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCATTCGTTCAAATGAGTAGCCATTTACAGCACAGCACCATTGACTaGCCGATAGAGTTGATATTTCCTCAAGTTCCAATCAAGAACTTG | + |
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Preference number: 1 (lower is better) Translates to: SFVQMSSHLQHSTID*PIELIFPQVPIKNL Trigger: CAAGTTCTTGATTGGAACTTGAGGAAATATCAACTCTATCGGCCAGTCAATGGTGCTGTGCTGTAAATGGCTACTCATTTGAACGAATGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| 3UTR-3UTR CCA 90 bp | CTGTCTCTGATGAGCCCAAAGGCACTTGAGAGTCTGGCTGTGCCTCAGGGTCACAGTCTGCCCCGGCCCTaGGGATCCACTCTGCAAAGA | + |
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Preference number: 2 (lower is better) Translates to: LSLMSPKALESLAVPQGHSLPRP*GSTLQR Trigger: TCTTTGCAGAGTGGATCCCCAGGGCCGGGGCAGACT...GTGACCCTGAGGCACAGCCAGACTCTCAAGTGCCTTTGGGCTCATCAGAGACAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| 3UTR-3UTR GCA 90 bp | TGTCCTCTTGCCCCAACAGTGGTAAGTTCTCTCCTGCCCAGAGGAACTGGGATGGACAAGAATGAGCCTTaGTGCACCCGCCAGCCCCTG | + |
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Preference number: 2 (lower is better) Translates to: CPLAPTVVSSLLPRGTGMDKNEP*CTRQPL Trigger: CAGGGGCTGGCGGGTGCAGCAAGGCTCATTCTTGTC...CATCCCAGTTCCTCTGGGCAGGAGAGAACTTACCACTGTTGGGGCAAGAGGACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| 3UTR-3UTR GCA 90 bp | CTGTCCTCTTGCCCCAACAGTGGTAAGTTCTCTCCTGCCCAGAGGAACTGGGATTTGAGAGTCTGGCTGTaGCTCAGGGTCACCTGTTTT | + |
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Preference number: 2 (lower is better) Translates to: LSSCPNSGKFSPAQRNWDLRVWL*LRVTCF Trigger: AAAACAGGTGACCCTGAGGCACAGCCAGACTCTCAA...ATCCCAGTTCCTCTGGGCAGGAGAGAACTTACCACTGTTGGGGCAAGAGGACAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| 3UTR-3UTR TCA 90 bp | TGCAAAGAGTTTATTTCAGCAATGTTGGGCCACACCAGTTCTCTGCGTCCTTTGCAGCTCAGACAAGAATaGGCCTTGCTGCACCCGCCA | + |
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Preference number: 2 (lower is better) Translates to: CKEFISAMLGHTSSLRPLQLRQE*ALLHPP Trigger: TGGCGGGTGCAGCAAGGCTCATTCTTGTCTGAGCTG...CAAAGGACGCAGAGAACTGGTGTGGCCCAACATTGCTGAAATAAACTCTTTGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| 3UTR-3UTR TCA 90 bp | CTGTCCTCTTGCCCCAACAGTGGTAAGTTCTCTCCTGCCCAGAGGAACTGGGATGTTTTTGCTAAGGGTTaGGCTATTCTCAGTAGCATG | + |
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Preference number: 2 (lower is better) Translates to: LSSCPNSGKFSPAQRNWDVFAKG*AILSSM Trigger: CATGCTACTGAGAATAGCTCAACCCTTAGCAAAAAC...ATCCCAGTTCCTCTGGGCAGGAGAGAACTTACCACTGTTGGGGCAAGAGGACAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| 3UTR-3UTR CCA 90 bp | TCATTCGTTCAAATGAGTAGCCATTTACAGCACAGCACCATTGACTGGCCGATAAACAGGAGTTTACTGTaGCTGGAAGTCAGGCTGACC | + |
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Preference number: 2 (lower is better) Translates to: SFVQMSSHLQHSTIDWPINRSLL*LEVRLT Trigger: GGTCAGCCTGACTTCCAGCCACAGTAAACTCCTGTT...TATCGGCCAGTCAATGGTGCTGTGCTGTAAATGGCTACTCATTTGAACGAATGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| 3UTR-3UTR GCA 90 bp | TCACCTGAAGGAACAATCACAAACTTTAAGACAGCAGTCACCCACAACTCCTTTAAGGTTAAGTGCTACTaGAAGTTCCGGACACAGCTG | + |
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Preference number: 2 (lower is better) Translates to: SPEGTITNFKTAVTHNSFKVKCY*KFRTQL Trigger: CAGCTGTGTCCGGAACTTGCAGTAGCACTTAACCTT...AAAGGAGTTGTGGGTGACTGCTGTCTTAAAGTTTGTGATTGTTCCTTCAGGTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| 3UTR-3UTR GCA 90 bp | ACCTTAATCTACATATCCACCAGAAACTGTCCTCTTGCCCCAACAGTGGTAAGTCCTGGGGATCCACTCTaGAAAGAGTTTATTTCAGCA | + |
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Preference number: 2 (lower is better) Translates to: TLIYISTRNCPLAPTVVSPGDPL*KEFISA Trigger: TGCTGAAATAAACTCTTTGCAGAGTGGATCCCCAGG...ACTTACCACTGTTGGGGCAAGAGGACAGTTTCTGGTGGATATGTAGATTAAGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| 3UTR-3UTR CCA 90 bp | CTCCTGGGCACCTTAATCTACATATCCACCAGAAACTGTCCTCTTGCCCCAACAGTCACCTGTTTTCACTaGACTAAGTATGAAGAGATA | + |
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Preference number: 2 (lower is better) Translates to: LLGTLIYISTRNCPLAPTVTCFH*TKYEEI Trigger: TATCTCTTCATACTTAGTCCAGTGAAAACAGGTGAC...TGTTGGGGCAAGAGGACAGTTTCTGGTGGATATGTAGATTAAGGTGCCCAGGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| 3UTR-3UTR TCA 90 bp | TGCAAAGAGTTTATTTCAGCAATGTTGGGCCACACCAGTTCTCTGCGTCCTTTGCTTACTAGAGTCACCTaGAGGAACAATCACAAACTT | + |
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Preference number: 2 (lower is better) Translates to: CKEFISAMLGHTSSLRPLLTRVT*RNNHKL Trigger: AAGTTTGTGATTGTTCCTTCAGGTGACTCTAGTAAG...CAAAGGACGCAGAGAACTGGTGTGGCCCAACATTGCTGAAATAAACTCTTTGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| 3UTR-3UTR TCA 90 bp | AGCCATTTACAGCACAGCACCATTGACTGGCCGATAGAGTTGATATTTCCTCAAAGTAACTGCTATAACTaGCAATGCTCTTTCCAAGCA | + |
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Preference number: 2 (lower is better) Translates to: SHLQHSTIDWPIELIFPQSNCYN*QCSFQA Trigger: TGCTTGGAAAGAGCATTGTCAGTTATAGCAGTTACT...TTGAGGAAATATCAACTCTATCGGCCAGTCAATGGTGCTGTGCTGTAAATGGCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| 3UTR-3UTR GCA 90 bp | TTCCTCAAGTTCCAATCAAGAACTTGTATATGTAACCTGTCTCTGATGAGCCCAAGTTACAAGGTTAAGTaGTACTGCAAGTTCCGGACA | + |
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Preference number: 2 (lower is better) Translates to: FLKFQSRTCICNLSLMSPSYKVK*YCKFRT Trigger: TGTCCGGAACTTGCAGTAGCACTTAACCTTGTAACT...TGGGCTCATCAGAGACAGGTTACATATACAAGTTCTTGATTGGAACTTGAGGAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| 3UTR GCA 72 bp | CAGAGGCTCCAGCTCCACGGAAGTTACAAGGTTAAGTaGTACTGCAAGTTCCGGACACAGCTGACCCCGCAT | + |
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Preference number: 3 (lower is better) Translates to: QRLQLHGSYKVK*YCKFRTQLTPH Trigger: ATGCGGGGTCAGCTGTGTCCGGAACTTGCAGTAGCACTTAACCTTGTAACTTCCGTGGAGCTGGAGCCTCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| 3UTR GCA 72 bp | CACCTTAATCTACATATCCACCAGAAACTGTCCTCTTaGCCCAACAGTGGTAAGTTCTCTCCTGCCCAGAGG | + |
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Preference number: 3 (lower is better) Translates to: HLNLHIHQKLSS*PNSGKFSPAQR Trigger: CCTCTGGGCAGGAGAGAACTTACCACTGTTGGGGCAAGAGGACAGTTTCTGGTGGATATGTAGATTAAGGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| 3UTR CCA 72 bp | GGGATCCACTCTGCAAAGAGTTTATTTCAGCAATGTTaGGCCACACCAGTTCTCTGCGTCCTTTGTAGGCTC | + |
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Preference number: 3 (lower is better) Translates to: GIHSAKSLFQQC*ATPVLCVLCRL Trigger: GAGCCTACAAAGGACGCAGAGAACTGGTGTGGCCCAACATTGCTGAAATAAACTCTTTGCAGAGTGGATCCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| 3UTR-3UTR CAA 90 bp | GGCTGTGCCTCAGGGTCACCTGTTTTCACTGGACTAAGTATGAAGAGATATGAATTTATTTCAGCAATGTaGGGCCACACCAGTTCTCTG | + |
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Preference number: 3 (lower is better) Translates to: GCASGSPVFTGLSMKRYEFISAM*GHTSSL Trigger: CAGAGAACTGGTGTGGCCCAACATTGCTGAAATAAA...TTCATATCTCTTCATACTTAGTCCAGTGAAAACAGGTGACCCTGAGGCACAGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| 3UTR CCA 72 bp | CAAATGAGTAGCCATTTACAGCACAGCACCATTGACTaGCCGATAGAGTTGATATTTCCTCAAGTTCCAATC | + |
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Preference number: 3 (lower is better) Translates to: QMSSHLQHSTID*PIELIFPQVPI Trigger: GATTGGAACTTGAGGAAATATCAACTCTATCGGCCAGTCAATGGTGCTGTGCTGTAAATGGCTACTCATTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| 3UTR-3UTR CAA 90 bp | TATTTCCTCAAGTTCCAATCAAGAACTTGTATATGTAACCTGTCTCTGATGAGCCCAAGCACGGAGTTTTaGCTAAGGGTTGAGCTATTC | + |
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Preference number: 3 (lower is better) Translates to: YFLKFQSRTCICNLSLMSPSTEF*LRVELF Trigger: GAATAGCTCAACCCTTAGCAAAAACTCCGTGCTTGG...GCTCATCAGAGACAGGTTACATATACAAGTTCTTGATTGGAACTTGAGGAAATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| CDS-3UTR CCA 90 bp | CTCCTGGGCACCTTAATCTACATATCCACCAGAAACTGTCCTCTTGCCCCAACACCCAGAGGCGGATGTTaGAGTCAAGCAGCAGCTCGG | + |
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Preference number: 4 (lower is better) Translates to: LLGTLIYISTRNCPLAPTPRGGC*SQAAAR Trigger: CCGAGCTGCTGCTTGACTCCAACATCCGCCTCTGGG...TGTTGGGGCAAGAGGACAGTTTCTGGTGGATATGTAGATTAAGGTGCCCAGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| CDS-3UTR CCA 90 bp | TGTCCTCTTGCCCCAACAGTGGTAAGTTCTCTCCTGCCCAGAGGAACTGGGATGAACATGCCTTCAAAGTaGAGGTCTCTGGCCATGAGT | + |
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Preference number: 4 (lower is better) Translates to: CPLAPTVVSSLLPRGTGMNMPSK*RSLAMS Trigger: ACTCATGGCCAGAGACCTCCACTTTGAAGGCATGTT...CATCCCAGTTCCTCTGGGCAGGAGAGAACTTACCACTGTTGGGGCAAGAGGACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| CDS-3UTR GCA 90 bp | CTCCTGGGCACCTTAATCTACATATCCACCAGAAACTGTCCTCTTGCCCCAACAGCTGCTCCTGTCATCTaGTCCTGCATCATTCGTGAC | + |
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Preference number: 4 (lower is better) Translates to: LLGTLIYISTRNCPLAPTAAPVI*SCIIRD Trigger: GTCACGAATGATGCAGGAGCAGATGACAGGAGCAGC...TGTTGGGGCAAGAGGACAGTTTCTGGTGGATATGTAGATTAAGGTGCCCAGGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| CDS-3UTR TCA 90 bp | TCATTCGTTCAAATGAGTAGCCATTTACAGCACAGCACCATTGACTGGCCGATACTCCTGCATCATTCGTaGCTGGTCGGCGGCGTTATC | + |
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Preference number: 4 (lower is better) Translates to: SFVQMSSHLQHSTIDWPILLHHS*LVGGVI Trigger: GATAACGCCGCCGACCAGTCACGAATGATGCAGGAG...TATCGGCCAGTCAATGGTGCTGTGCTGTAAATGGCTACTCATTTGAACGAATGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| CDS-3UTR CCA 90 bp | AGCCATTTACAGCACAGCACCATTGACTGGCCGATAGAGTTGATATTTCCTCAATGGTGTCTGCAGGCATaGCCATCGCTGCTCCTGTCA | + |
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Preference number: 4 (lower is better) Translates to: SHLQHSTIDWPIELIFPQWCLQA*PSLLLS Trigger: TGACAGGAGCAGCGATGGCCATGCCTGCAGACACCA...TTGAGGAAATATCAACTCTATCGGCCAGTCAATGGTGCTGTGCTGTAAATGGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| CDS-3UTR TCA 90 bp | CTCCTGGGCACCTTAATCTACATATCCACCAGAAACTGTCCTCTTGCCCCAACACTTCCCACTCTGTCTTaGAAGCTTTGTTGGTGTCTG | + |
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Preference number: 4 (lower is better) Translates to: LLGTLIYISTRNCPLAPTLPTLS*KLCWCL Trigger: CAGACACCAACAAAGCTTTCAAGACAGAGTGGGAAG...TGTTGGGGCAAGAGGACAGTTTCTGGTGGATATGTAGATTAAGGTGCCCAGGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| CDS-3UTR GCA 90 bp | GGCTGTGCCTCAGGGTCACCTGTTTTCACTGGACTAAGTATGAAGAGATATGAACCTGTCATCTGCTCCTaGATCATTCGTGACTGGTCG | + |
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Preference number: 4 (lower is better) Translates to: GCASGSPVFTGLSMKRYEPVICS*IIRDWS Trigger: CGACCAGTCACGAATGATGCAGGAGCAGATGACAGG...TTCATATCTCTTCATACTTAGTCCAGTGAAAACAGGTGACCCTGAGGCACAGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| CDS-3UTR CCA 90 bp | TCACCTGAAGGAACAATCACAAACTTTAAGACAGCAGTCACCCACAACTCCTTTTGGTGGGGTCTGTCATaGGGGAAGGTGGCACAACCT | + |
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Preference number: 4 (lower is better) Translates to: SPEGTITNFKTAVTHNSFWWGLS*GKVAQP Trigger: AGGTTGTGCCACCTTCCCCCATGACAGACCCCACCA...AAAGGAGTTGTGGGTGACTGCTGTCTTAAAGTTTGTGATTGTTCCTTCAGGTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| CDS-3UTR TCA 90 bp | TCACCTGAAGGAACAATCACAAACTTTAAGACAGCAGTCACCCACAACTCCTTTGGAGGTCTCTGGCCATaGGTTCTTCTTCCACATCAT | + |
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Preference number: 4 (lower is better) Translates to: SPEGTITNFKTAVTHNSFGGLWP*VLLPHH Trigger: ATGATGTGGAAGAAGAACTCATGGCCAGAGACCTCC...AAAGGAGTTGTGGGTGACTGCTGTCTTAAAGTTTGTGATTGTTCCTTCAGGTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| CDS-3UTR TCA 90 bp | CTCCTGGGCACCTTAATCTACATATCCACCAGAAACTGTCCTCTTGCCCCAACATCTGTAGTTCCTTTTTaGACATGCCTTCAAAGTGGA | + |
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Preference number: 4 (lower is better) Translates to: LLGTLIYISTRNCPLAPTSVVPF*TCLQSG Trigger: TCCACTTTGAAGGCATGTTCAAAAAGGAACTACAGA...TGTTGGGGCAAGAGGACAGTTTCTGGTGGATATGTAGATTAAGGTGCCCAGGAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| CDS-3UTR GCA 90 bp | TGCAAAGAGTTTATTTCAGCAATGTTGGGCCACACCAGTTCTCTGCGTCCTTTGGGATTAGAGAGTAAATaGTCCGGAGCCCAAACACAT | + |
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Preference number: 4 (lower is better) Translates to: CKEFISAMLGHTSSLRPLGLESK*SGAQTH Trigger: ATGTGTTTGGGCTCCGGAGCATTTACTCTCTAATCC...CAAAGGACGCAGAGAACTGGTGTGGCCCAACATTGCTGAAATAAACTCTTTGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| CDS-3UTR TCA 90 bp | AGCCATTTACAGCACAGCACCATTGACTGGCCGATAGAGTTGATATTTCCTCAATTGGGAGGACATTTGTaGCATTCCCTTTCATCATGT | + |
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Preference number: 4 (lower is better) Translates to: SHLQHSTIDWPIELIFPQLGGHL*HSLSSC Trigger: ACATGATGAAAGGGAATGTCACAAATGTCCTCCCAA...TTGAGGAAATATCAACTCTATCGGCCAGTCAATGGTGCTGTGCTGTAAATGGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| CDS-3UTR GCA 90 bp | TATTTCCTCAAGTTCCAATCAAGAACTTGTATATGTAACCTGTCTCTGATGAGCGAGGAAGTACCAGGATaGAGAACTCACCCAGGATGC | + |
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Preference number: 4 (lower is better) Translates to: YFLKFQSRTCICNLSLMSEEVPG*RTHPGC Trigger: GCATCCTGGGTGAGTTCTGCATCCTGGTACTTCCTC...GCTCATCAGAGACAGGTTACATATACAAGTTCTTGATTGGAACTTGAGGAAATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| CDS-3UTR TCA 90 bp | TCACCTGAAGGAACAATCACAAACTTTAAGACAGCAGTCACCCACAACTCCTTTAGTTGTGACAAAGCCTaGAAACGTCATGTTGATCCA | + |
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Preference number: 4 (lower is better) Translates to: SPEGTITNFKTAVTHNSFSCDKA*KRHVDP Trigger: TGGATCAACATGACGTTTTCAGGCTTTGTCACAACT...AAAGGAGTTGTGGGTGACTGCTGTCTTAAAGTTTGTGATTGTTCCTTCAGGTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| CDS-3UTR CCA 90 bp | TTCCTCAAGTTCCAATCAAGAACTTGTATATGTAACCTGTCTCTGATGAGCCCAGCCGATAAGAATCATTaGGAGGACATTTGTGACATT | + |
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Preference number: 4 (lower is better) Translates to: FLKFQSRTCICNLSLMSPADKNH*EDICDI Trigger: AATGTCACAAATGTCCTCCCAATGATTCTTATCGGC...TGGGCTCATCAGAGACAGGTTACATATACAAGTTCTTGATTGGAACTTGAGGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| 3UTR CAA 72 bp | CATTTACAGCACAGCACCATTGACTGGCCGATAGAGTaGATATTTCCTCAAGTTCCAATCAAGAACTTGTAT | + |
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Preference number: 4 (lower is better) Translates to: HLQHSTIDWPIE*IFPQVPIKNLY Trigger: ATACAAGTTCTTGATTGGAACTTGAGGAAATATCAACTCTATCGGCCAGTCAATGGTGCTGTGCTGTAAATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| CDS-3UTR CAA 90 bp | CTGTCCTCTTGCCCCAACAGTGGTAAGTTCTCTCCTGCCCAGAGGAACTGGGATGTCTTGAAAGCTTTGTaGGTGTCTGCAGGCATGGCC | + |
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Preference number: 5 (lower is better) Translates to: LSSCPNSGKFSPAQRNWDVLKAL*VSAGMA Trigger: GGCCATGCCTGCAGACACCAACAAAGCTTTCAAGAC...ATCCCAGTTCCTCTGGGCAGGAGAGAACTTACCACTGTTGGGGCAAGAGGACAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| CDS-3UTR CAA 90 bp | CTGTCCTCTTGCCCCAACAGTGGTAAGTTCTCTCCTGCCCAGAGGAACTGGGATTCTGTCTTGAAAGCTTaGTTGGTGTCTGCAGGCATG | + |
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Preference number: 5 (lower is better) Translates to: LSSCPNSGKFSPAQRNWDSVLKA*LVSAGM Trigger: CATGCCTGCAGACACCAACAAAGCTTTCAAGACAGA...ATCCCAGTTCCTCTGGGCAGGAGAGAACTTACCACTGTTGGGGCAAGAGGACAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| CDS-3UTR CAA 90 bp | TGCAAAGAGTTTATTTCAGCAATGTTGGGCCACACCAGTTCTCTGCGTCCTTTGGCTTCCCACTCTGTCTaGAAAGCTTTGTTGGTGTCT | + |
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Preference number: 5 (lower is better) Translates to: CKEFISAMLGHTSSLRPLASHSV*KALLVS Trigger: AGACACCAACAAAGCTTTCAAGACAGAGTGGGAAGC...CAAAGGACGCAGAGAACTGGTGTGGCCCAACATTGCTGAAATAAACTCTTTGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| CDS-3UTR CAA 90 bp | TCATTCGTTCAAATGAGTAGCCATTTACAGCACAGCACCATTGACTGGCCGATAGAGCAGCTCTATTCCTaGCTGAAGCATAGGCTTGAA | + |
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Preference number: 5 (lower is better) Translates to: SFVQMSSHLQHSTIDWPIEQLYS*LKHRLE Trigger: TTCAAGCCTATGCTTCAGCAAGGAATAGAGCTGCTC...TATCGGCCAGTCAATGGTGCTGTGCTGTAAATGGCTACTCATTTGAACGAATGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| CDS-3UTR CAA 90 bp | TCACCTGAAGGAACAATCACAAACTTTAAGACAGCAGTCACCCACAACTCCTTTGTCTGTAGTTCCTTTTaGAACATGCCTTCAAAGTGG | + |
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Preference number: 5 (lower is better) Translates to: SPEGTITNFKTAVTHNSFVCSSF*NMPSKW Trigger: CCACTTTGAAGGCATGTTCAAAAAGGAACTACAGAC...AAAGGAGTTGTGGGTGACTGCTGTCTTAAAGTTTGTGATTGTTCCTTCAGGTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| CDS CAA 72 bp | GGGACCTTAGTTGTGACAAAGCCTGAAAACGTCATGTaGATCCATCCGCCGATAAGAATCATTGGGAGGACA | + |
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Preference number: 6 (lower is better) Translates to: GTLVVTKPENVM*IHPPIRIIGRT Trigger: TGTCCTCCCAATGATTCTTATCGGCGGATGGATCAACATGACGTTTTCAGGCTTTGTCACAACTAAGGTCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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| CDS CAA 90 bp | AGTGGAAACGGGACCTTAGTTGTGACAAAGCCTGAAAACGTCATGTaGATCCATCCGCCGATAAGAATCATTGGGAGGACATTTGTGACA | + |
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Preference number: 6 (lower is better) Translates to: SGNGTLVVTKPENVM*IHPPIRIIGRTFVT Trigger: TGTCACAAATGTCCTCCCAATGATTCTTATCGGCGGATGGATCAACATGACGTTTTCAGGCTTTGTCACAACTAAGGTCCCGTTTCCACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032425.7 |
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