Pregenerated sensors for EMB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021728Ensembl transcript IDs: ENSMUST00000022242.9
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGGCATGCAGGTAGCGAGCGGGGTTGTACTGTGACAACGTGGATCTaGCCTCTGAAGACTATTGAAGTCCAAACCCCAATGACAAAGAAC | + |
|
Preference number: 1 (lower is better) Translates to: RHAGSERGCTVTTWI*PLKTIEVQTPMTKN Trigger: GTTCTTTGTCATTGGGGTTTGGACTTCAATAGTCTTCAGAGGCCAGATCCACGTTGTCACAGTACAACCCCGCTCGCTACCTGCATGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022242.9 |
||
| 3UTR TCA 90 bp | GGTAATAAACAGATCTTCGGCGATATTTATTTGTGGATTATTAAGTaGTTTTGCTGGTGTCCACCCTGTACCCACAGAGGGGAGTTTATT | + |
|
Preference number: 1 (lower is better) Translates to: GNKQIFGDIYLWIIK*FCWCPPCTHRGEFI Trigger: AATAAACTCCCCTCTGTGGGTACAGGGTGGACACCAGCAAAATCACTTAATAATCCACAAATAAATATCGCCGAAGATCTGTTTATTACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022242.9 |
||
| 3UTR TCA 90 bp | CACAAGTTTATCTTAGTGTCTAGACTGCAGTGTAGCCACCGATATTaGAAGCATACTTTCCATTTCCTAGAGAAATCACACTCAACACTG | + |
|
Preference number: 1 (lower is better) Translates to: HKFILVSRLQCSHRY*KHTFHFLEKSHSTL Trigger: CAGTGTTGAGTGTGATTTCTCTAGGAAATGGAAAGTATGCTTTCAATATCGGTGGCTACACTGCAGTCTAGACACTAAGATAAACTTGTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022242.9 |
||
| 3UTR-3UTR TCA 90 bp | CTCTTTGTAGCCCTGTTTTCCCAGGCAGTGTATCACAAAAGCCAGCAGCACAAGTACTTCTGTGCACGTTaGGGGCATCTTTGTCTTTTA | + |
|
Preference number: 2 (lower is better) Translates to: LFVALFSQAVYHKSQQHKYFCAR*GHLCLL Trigger: TAAAAGACAAAGATGCCCTCAACGTGCACAGAAGTA...CTTGTGCTGCTGGCTTTTGTGATACACTGCCTGGGAAAACAGGGCTACAAAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000022242.9 |
||
| 3UTR-3UTR TCA 90 bp | GGCAGTGTATCACAAAAGCCAGCAGCACAAGGGACATTTAATCCAACCATCCAACATGGCACAAGCATTTaGACTCCCTTACTTTGCACC | + |
|
Preference number: 2 (lower is better) Translates to: GSVSQKPAAQGTFNPTIQHGTSI*TPLLCT Trigger: GGTGCAAAGTAAGGGAGTTCAAATGCTTGTGCCATG...TTGGATGGTTGGATTAAATGTCCCTTGTGCTGCTGGCTTTTGTGATACACTGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022242.9 |
||
| 3UTR-3UTR CCA 90 bp | AACCGGTGGACTCTTTTTACCCAACCTCTAATCCCAGAATCACCAAGAACCATGGTGACAACGTGGATCTaGCCTCTGAAGACTATTGAA | + |
|
Preference number: 2 (lower is better) Translates to: NRWTLFTQPLIPESPRTMVTTWI*PLKTIE Trigger: TTCAATAGTCTTCAGAGGCCAGATCCACGTTGTCAC...CATGGTTCTTGGTGATTCTGGGATTAGAGGTTGGGTAAAAAGAGTCCACCGGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022242.9 |
||
| 3UTR-3UTR TCA 90 bp | AACCGGTGGACTCTTTTTACCCAACCTCTAATCCCAGAATCACCAAGAACCATGTTGTGGATTATTAAGTaGTTTTGCTGGTGTCCACCC | + |
|
Preference number: 2 (lower is better) Translates to: NRWTLFTQPLIPESPRTMLWIIK*FCWCPP Trigger: GGGTGGACACCAGCAAAATCACTTAATAATCCACAA...CATGGTTCTTGGTGATTCTGGGATTAGAGGTTGGGTAAAAAGAGTCCACCGGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022242.9 |
||
| 3UTR-3UTR TCA 90 bp | GGCAGTGTATCACAAAAGCCAGCAGCACAAGGGACATTTAATCCAACCATCCAATGTAGCCACCGATATTaGAAGCATACTTTCCATTTC | + |
|
Preference number: 2 (lower is better) Translates to: GSVSQKPAAQGTFNPTIQCSHRY*KHTFHF Trigger: GAAATGGAAAGTATGCTTTCAATATCGGTGGCTACA...TTGGATGGTTGGATTAAATGTCCCTTGTGCTGCTGGCTTTTGTGATACACTGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022242.9 |
||
| 3UTR-3UTR CCA 90 bp | GATAGTGCACTAGTCCTCCTGTATACTAGACAAAGGAATTATTATTGGAAAACAGGAAGCTCTTCGGCTTaGGATAGAAAGAGCAGAAAT | + |
|
Preference number: 2 (lower is better) Translates to: DSALVLLYTRQRNYYWKTGSSSA*DRKSRN Trigger: ATTTCTGCTCTTTCTATCCCAAGCCGAAGAGCTTCC...TGTTTTCCAATAATAATTCCTTTGTCTAGTATACAGGAGGACTAGTGCACTATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022242.9 |
||
| 3UTR CAA 90 bp | CAATTACAAAATGAAAGTACATCTTTAGGTAGGAGATGGACTATATaGTTCATAAAGCTACTTCTGTGCACGTTGAGGGCATCTTTGTCT | + |
|
Preference number: 2 (lower is better) Translates to: QLQNESTSLGRRWTI*FIKLLLCTLRASLS Trigger: AGACAAAGATGCCCTCAACGTGCACAGAAGTAGCTTTATGAACAATATAGTCCATCTCCTACCTAAAGATGTACTTTCATTTTGTAATTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022242.9 |
||
| 3UTR CCA 72 bp | GGTAGCGAGCGGGGTTGTACTGTGACAACGTGGATCTaGCCTCTGAAGACTATTGAAGTCCAAACCCCAATG | + |
|
Preference number: 3 (lower is better) Translates to: GSERGCTVTTWI*PLKTIEVQTPM Trigger: CATTGGGGTTTGGACTTCAATAGTCTTCAGAGGCCAGATCCACGTTGTCACAGTACAACCCCGCTCGCTACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022242.9 |
||
| 3UTR TCA 72 bp | CAGATCTTCGGCGATATTTATTTGTGGATTATTAAGTaGTTTTGCTGGTGTCCACCCTGTACCCACAGAGGG | + |
|
Preference number: 3 (lower is better) Translates to: QIFGDIYLWIIK*FCWCPPCTHRG Trigger: CCCTCTGTGGGTACAGGGTGGACACCAGCAAAATCACTTAATAATCCACAAATAAATATCGCCGAAGATCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022242.9 |
||
| 3UTR CCA 72 bp | AAAATGTTCTACTTAAGGCTGGGAAGCTCTTCGGCTTaGGATAGAAAGAGCAGAAATGAGTGCAATGAAGAT | + |
|
Preference number: 3 (lower is better) Translates to: KMFYLRLGSSSA*DRKSRNECNED Trigger: ATCTTCATTGCACTCATTTCTGCTCTTTCTATCCCAAGCCGAAGAGCTTCCCAGCCTTAAGTAGAACATTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022242.9 |
||
| 3UTR TCA 72 bp | ATCTTAGTGTCTAGACTGCAGTGTAGCCACCGATATTaGAAGCATACTTTCCATTTCCTAGAGAAATCACAC | + |
|
Preference number: 3 (lower is better) Translates to: ILVSRLQCSHRY*KHTFHFLEKSH Trigger: GTGTGATTTCTCTAGGAAATGGAAAGTATGCTTTCAATATCGGTGGCTACACTGCAGTCTAGACACTAAGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022242.9 |
||
| 3UTR-3UTR CAA 90 bp | GATAGTGCACTAGTCCTCCTGTATACTAGACAAAGGAATTATTATTGGAAAACAAGGAGATGGACTATATaGTTCATAAAGCTACTTCTG | + |
|
Preference number: 3 (lower is better) Translates to: DSALVLLYTRQRNYYWKTRRWTI*FIKLLL Trigger: CAGAAGTAGCTTTATGAACAATATAGTCCATCTCCT...TGTTTTCCAATAATAATTCCTTTGTCTAGTATACAGGAGGACTAGTGCACTATC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022242.9 |
||
| 3UTR GCA 72 bp | AGGAGATGGACTATATTGTTCATAAAGCTACTTCTGTaGACGTTGAGGGCATCTTTGTCTTTTAAAAATCTA | + |
|
Preference number: 3 (lower is better) Translates to: RRWTILFIKLLL*TLRASLSFKNL Trigger: TAGATTTTTAAAAGACAAAGATGCCCTCAACGTGCACAGAAGTAGCTTTATGAACAATATAGTCCATCTCCT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022242.9 |
||
| CDS-3UTR TCA 90 bp | CTCTTTGTAGCCCTGTTTTCCCAGGCAGTGTATCACAAAAGCCAGCAGCACAAGCATTTGAGTTCCACATaGGAAGGCTTTTCCAAAATT | + |
|
Preference number: 4 (lower is better) Translates to: LFVALFSQAVYHKSQQHKHLSST*EGFSKI Trigger: AATTTTGGAAAAGCCTTCTCATGTGGAACTCAAATG...CTTGTGCTGCTGGCTTTTGTGATACACTGCCTGGGAAAACAGGGCTACAAAGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000022242.9 |
||
| CDS-3UTR CCA 90 bp | TCCACCCTGTACCCACAGAGGGGAGTTTATTATCTAGGTTACAGCTCACAGAACTTCTTTCCCAGCATCTaGGTCATTCTTTTTCTTGTG | + |
|
Preference number: 4 (lower is better) Translates to: STLYPQRGVYYLGYSSQNFFPSI*VILFLV Trigger: CACAAGAAAAAGAATGACCCAGATGCTGGGAAAGAA...GTTCTGTGAGCTGTAACCTAGATAATAAACTCCCCTCTGTGGGTACAGGGTGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022242.9 |
||
| CDS-3UTR TCA 90 bp | AACCGGTGGACTCTTTTTACCCAACCTCTAATCCCAGAATCACCAAGAACCATGTACGTTCTCTTCTACTaGTACATTGGACTTTTCCGT | + |
|
Preference number: 4 (lower is better) Translates to: NRWTLFTQPLIPESPRTMYVLFY*YIGLFR Trigger: ACGGAAAAGTCCAATGTATCAGTAGAAGAGAACGTA...CATGGTTCTTGGTGATTCTGGGATTAGAGGTTGGGTAAAAAGAGTCCACCGGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022242.9 |
||
| CDS-3UTR GCA 90 bp | GGCAGTGTATCACAAAAGCCAGCAGCACAAGGGACATTTAATCCAACCATCCAATCTTCCTCCAAAAGATaGTTAATCTTGAGCCTTGTT | + |
|
Preference number: 4 (lower is better) Translates to: GSVSQKPAAQGTFNPTIQSSSKR*LILSLV Trigger: AACAAGGCTCAAGATTAAGCATCTTTTGGAGGAAGA...TTGGATGGTTGGATTAAATGTCCCTTGTGCTGCTGGCTTTTGTGATACACTGCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022242.9 |
||
| CDS-3UTR TCA 90 bp | CATTTCCTAGAGAAATCACACTCAACACTGGATACACTTCACATGAAAACTGTGAAAGGAAGACAATCTTaGCATACACACTTCAGCACA | + |
|
Preference number: 4 (lower is better) Translates to: HFLEKSHSTLDTLHMKTVKGRQS*HTHFST Trigger: TGTGCTGAAGTGTGTATGTCAAGATTGTCTTCCTTT...CACAGTTTTCATGTGAAGTGTATCCAGTGTTGAGTGTGATTTCTCTAGGAAATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022242.9 |
||
| 3UTR CAA 72 bp | AATGAAAGTACATCTTTAGGTAGGAGATGGACTATATaGTTCATAAAGCTACTTCTGTGCACGTTGAGGGCA | + |
|
Preference number: 4 (lower is better) Translates to: NESTSLGRRWTI*FIKLLLCTLRA Trigger: TGCCCTCAACGTGCACAGAAGTAGCTTTATGAACAATATAGTCCATCTCCTACCTAAAGATGTACTTTCATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022242.9 |
||
| CDS-3UTR CAA 90 bp | TTCTACTTAAGGCTGGGAAGCTCTTCGGCTTGGGATAGAAAGAGCAGAAATGAGATGGCCAGAAATGGCTaGAGGGGCACCAGGAAGCTC | + |
|
Preference number: 5 (lower is better) Translates to: FYLRLGSSSAWDRKSRNEMARNG*RGTRKL Trigger: GAGCTTCCTGGTGCCCCTCAAGCCATTTCTGGCCAT...CTCATTTCTGCTCTTTCTATCCCAAGCCGAAGAGCTTCCCAGCCTTAAGTAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022242.9 |
||
| CDS-3UTR CAA 90 bp | CTCTTTGTAGCCCTGTTTTCCCAGGCAGTGTATCACAAAAGCCAGCAGCACAAGCTGTACCGGGGGACATaGTTTTCTATGCCATTGCTA | + |
|
Preference number: 5 (lower is better) Translates to: LFVALFSQAVYHKSQQHKLYRGT*FSMPLL Trigger: TAGCAATGGCATAGAAAACAATGTCCCCCGGTACAG...CTTGTGCTGCTGGCTTTTGTGATACACTGCCTGGGAAAACAGGGCTACAAAGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000022242.9 |
||
| CDS-3UTR CAA 90 bp | TTCTACTTAAGGCTGGGAAGCTCTTCGGCTTGGGATAGAAAGAGCAGAAATGAGTCTTCTACTGATACATaGGACTTTTCCGTCACTGAG | + |
|
Preference number: 5 (lower is better) Translates to: FYLRLGSSSAWDRKSRNESSTDT*DFSVTE Trigger: CTCAGTGACGGAAAAGTCCAATGTATCAGTAGAAGA...CTCATTTCTGCTCTTTCTATCCCAAGCCGAAGAGCTTCCCAGCCTTAAGTAGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022242.9 |
||
| CDS-3UTR CAA 90 bp | TTCTACTTAAGGCTGGGAAGCTCTTCGGCTTGGGATAGAAAGAGCAGAAATGAGGGGTCATTCTTTTTCTaGTGTGTGTACACTTCACAA | + |
|
Preference number: 5 (lower is better) Translates to: FYLRLGSSSAWDRKSRNEGSFFF*CVYTSQ Trigger: TTGTGAAGTGTACACACACAAGAAAAAGAATGACCC...CTCATTTCTGCTCTTTCTATCCCAAGCCGAAGAGCTTCCCAGCCTTAAGTAGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022242.9 |
||
| CDS-3UTR CAA 90 bp | GGCAGTGTATCACAAAAGCCAGCAGCACAAGGGACATTTAATCCAACCATCCAAAAAAGATGCTTAATCTaGAGCCTTGTTTCATTGGCA | + |
|
Preference number: 5 (lower is better) Translates to: GSVSQKPAAQGTFNPTIQKRCLI*SLVSLA Trigger: TGCCAATGAAACAAGGCTCAAGATTAAGCATCTTTT...TTGGATGGTTGGATTAAATGTCCCTTGTGCTGCTGGCTTTTGTGATACACTGCC 42% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022242.9 |
||
| CDS-3UTR CAA 90 bp | CATTTCCTAGAGAAATCACACTCAACACTGGATACACTTCACATGAAAACTGTGTTGAGCCTTGTTTCATaGGCATGGGAACCATTGATG | + |
|
Preference number: 5 (lower is better) Translates to: HFLEKSHSTLDTLHMKTVLSLVS*AWEPLM Trigger: CATCAATGGTTCCCATGCCAATGAAACAAGGCTCAA...CACAGTTTTCATGTGAAGTGTATCCAGTGTTGAGTGTGATTTCTCTAGGAAATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022242.9 |
||
| CDS TCA 90 bp | AAGTTCAAATCCTTAGTTGCTGTGTACACGCATTTGAGTTCCACATaGGAAGGCTTTTCCAAAATTACGTTCTCTTCTACTGATACATTG | + |
|
Preference number: 5 (lower is better) Translates to: KFKSLVAVYTHLSST*EGFSKITFSSTDTL Trigger: CAATGTATCAGTAGAAGAGAACGTAATTTTGGAAAAGCCTTCTCATGTGGAACTCAAATGCGTGTACACAGCAACTAAGGATTTGAACTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022242.9 |
||
| CDS TCA 72 bp | GCATGGGAACCATTGATGATATACTTTTCATTCGAGTaGGCGTCAATGGGAACCTGTGCGGTTTCATTACCC | + |
|
Preference number: 6 (lower is better) Translates to: AWEPLMIYFSFE*ASMGTCAVSLP Trigger: GGGTAATGAAACCGCACAGGTTCCCATTGACGCTCACTCGAATGAAAAGTATATCATCAATGGTTCCCATGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022242.9 |
||