Pregenerated sensors for ELOF1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000013822Ensembl transcript IDs: ENSMUST00000013966.8, ENSMUST00000166335.2, ENSMUST00000213233.2, ENSMUST00000214394.2, ENSMUST00000216837.2
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCACCTGAGGCTCAGGGTTCCATGAGGCCACCCTGGGCTGCTTGGTaGGACCCAGTGTCGCTCGCCTCCATCCCTACAGTCACATCTGCA | + |
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Preference number: 1 (lower is better) Translates to: SPEAQGSMRPPWAAW*DPVSLASIPTVTSA Trigger: TGCAGATGTGACTGTAGGGATGGAGGCGAGCGACACTGGGTCTCACCAAGCAGCCCAGGGTGGCCTCATGGAACCCTGAGCCTCAGGTGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 ENSMUST00000216837.2 |
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| 3UTR TCA 90 bp | GTGGGGGCTGAAGATGGGAGCAACTCAAAGGCTTGTAGAGTCACCTaGGGCTCAGGGTTCCATGAGGCCACCCTGGGCTGCTTGGTGAGA | + |
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Preference number: 1 (lower is better) Translates to: VGAEDGSNSKACRVT*GSGFHEATLGCLVR Trigger: TCTCACCAAGCAGCCCAGGGTGGCCTCATGGAACCCTGAGCCTCAGGTGACTCTACAAGCCTTTGAGTTGCTCCCATCTTCAGCCCCCAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 |
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| 3UTR GCA 90 bp | GCTGGTGAGGTGGCTGAGGAGACAGGAGGTCCCACAGCTATTCCTTaGCTGGATGTCAGGAACCGTCACCAGAGAAGACAGGAGCCTGAA | + |
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Preference number: 1 (lower is better) Translates to: AGEVAEETGGPTAIP*LDVRNRHQRRQEPE Trigger: TTCAGGCTCCTGTCTTCTCTGGTGACGGTTCCTGACATCCAGGCAAGGAATAGCTGTGGGACCTCCTGTCTCCTCAGCCACCTCACCAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 |
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| 3UTR CCA 90 bp | GTGAGGTGGCTGAGGAGACAGGAGGTCCCACAGCTATTCCTTGCCTaGATGTCAGGAACCGTCACCAGAGAAGACAGGAGCCTGAAGTGT | + |
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Preference number: 1 (lower is better) Translates to: VRWLRRQEVPQLFLA*MSGTVTREDRSLKC Trigger: ACACTTCAGGCTCCTGTCTTCTCTGGTGACGGTTCCTGACATCCAGGCAAGGAATAGCTGTGGGACCTCCTGTCTCCTCAGCCACCTCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 |
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| 3UTR GCA 90 bp | TTGGTGAGACCCAGTGTCGCTCGCCTCCATCCCTACAGTCACATCTaGAGCCACGAAATCTACTCACTCACATCCATCCCATCTGCAGAG | + |
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Preference number: 1 (lower is better) Translates to: LVRPSVARLHPYSHI*SHEIYSLTSIPSAE Trigger: CTCTGCAGATGGGATGGATGTGAGTGAGTAGATTTCGTGGCTGCAGATGTGACTGTAGGGATGGAGGCGAGCGACACTGGGTCTCACCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 ENSMUST00000216837.2 |
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| 3UTR-3UTR TCA 90 bp | TCCCAAGGGCAAGGTGCTGGTGAGGTGGCTGAGGAGACAGGAGGTCCCACAGCTAGGCTCAGGGTTCCATaGGGCCACCCTGGGCTGCTT | + |
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Preference number: 2 (lower is better) Translates to: SQGQGAGEVAEETGGPTARLRVP*GHPGLL Trigger: AAGCAGCCCAGGGTGGCCTCATGGAACCCTGAGCCT...AGCTGTGGGACCTCCTGTCTCCTCAGCCACCTCACCAGCACCTTGCCCTTGGGA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 |
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| 3UTR-3UTR TCA 90 bp | AGGACAGAAAGTCTAGGTCCCAAGGGCAAGGTGCTGGTGAGGTGGCTGAGGAGACCCTGGGCTGCTTGGTaGGACCCAGTGTCGCTCGCC | + |
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Preference number: 2 (lower is better) Translates to: RTESLGPKGKVLVRWLRRPWAAW*DPVSLA Trigger: GGCGAGCGACACTGGGTCTCACCAAGCAGCCCAGGG...TCTCCTCAGCCACCTCACCAGCACCTTGCCCTTGGGACCTAGACTTTCTGTCCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 |
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| 3UTR-3UTR TCA 90 bp | AGGACAGAAAGTCTAGGTCCCAAGGGCAAGGTGCTGGTGAGGTGGCTGAGGAGAAGGCTCAGGGTTCCATaGGGCCACCCTGGGCTGCTT | + |
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Preference number: 2 (lower is better) Translates to: RTESLGPKGKVLVRWLRRRLRVP*GHPGLL Trigger: AAGCAGCCCAGGGTGGCCTCATGGAACCCTGAGCCT...TCTCCTCAGCCACCTCACCAGCACCTTGCCCTTGGGACCTAGACTTTCTGTCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 |
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| 3UTR-3UTR CCA 90 bp | CTCACTCACATCCATCCCATCTGCAGAGGGCGGGCTGTCCTAGCCCTGGAATGTGGATTGGTAGCCAGATaGGGGCTGTGGAGGAGCAGG | + |
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Preference number: 2 (lower is better) Translates to: LTHIHPICRGRAVLALECGLVAR*GLWRSR Trigger: CCTGCTCCTCCACAGCCCCCATCTGGCTACCAATCC...ACATTCCAGGGCTAGGACAGCCCGCCCTCTGCAGATGGGATGGATGTGAGTGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 ENSMUST00000213233.2 ENSMUST00000214394.2 ENSMUST00000216837.2 |
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| 3UTR-3UTR GCA 90 bp | CCAGTAGCCTCGACCACAAGCACTAGGAGACTGGGAAGGACAGAAAGTCTAGGTGAGGCCACCCTGGGCTaGTTGGTGAGACCCAGTGTC | + |
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Preference number: 2 (lower is better) Translates to: PVASTTSTRRLGRTESLGEATLG*LVRPSV Trigger: GACACTGGGTCTCACCAAGCAGCCCAGGGTGGCCTC...ACCTAGACTTTCTGTCCTTCCCAGTCTCCTAGTGCTTGTGGTCGAGGCTACTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 |
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| 3UTR-3UTR CCA 90 bp | GAGGTCCCACAGCTATTCCTTGCCTGGATGTCAGGAACCGTCACCAGAGAAGACGGATTGGTAGCCAGATaGGGGCTGTGGAGGAGCAGG | + |
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Preference number: 2 (lower is better) Translates to: EVPQLFLAWMSGTVTREDGLVAR*GLWRSR Trigger: CCTGCTCCTCCACAGCCCCCATCTGGCTACCAATCC...GTCTTCTCTGGTGACGGTTCCTGACATCCAGGCAAGGAATAGCTGTGGGACCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 |
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| 3UTR-3UTR GCA 90 bp | GGGTGGCCAGTAGCCTCGACCACAAGCACTAGGAGACTGGGAAGGACAGAAAGTCCCACAGCTATTCCTTaGCTGGATGTCAGGAACCGT | + |
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Preference number: 2 (lower is better) Translates to: GWPVASTTSTRRLGRTESPTAIP*LDVRNR Trigger: ACGGTTCCTGACATCCAGGCAAGGAATAGCTGTGGG...ACTTTCTGTCCTTCCCAGTCTCCTAGTGCTTGTGGTCGAGGCTACTGGCCACCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 |
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| 3UTR-3UTR CCA 90 bp | CATCCCTACAGTCACATCTGCAGCCACGAAATCTACTCACTCACATCCATCCCAGGATTGGTAGCCAGATaGGGGCTGTGGAGGAGCAGG | + |
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Preference number: 2 (lower is better) Translates to: HPYSHICSHEIYSLTSIPGLVAR*GLWRSR Trigger: CCTGCTCCTCCACAGCCCCCATCTGGCTACCAATCC...TGGGATGGATGTGAGTGAGTAGATTTCGTGGCTGCAGATGTGACTGTAGGGATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 ENSMUST00000216837.2 |
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| 3UTR-3UTR CCA 90 bp | TCCATCCCTACAGTCACATCTGCAGCCACGAAATCTACTCACTCACATCCATCCGGATTGGTAGCCAGATaGGGGCTGTGGAGGAGCAGG | + |
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Preference number: 2 (lower is better) Translates to: SIPTVTSAATKSTHSHPSGLVAR*GLWRSR Trigger: CCTGCTCCTCCACAGCCCCCATCTGGCTACCAATCC...GGATGGATGTGAGTGAGTAGATTTCGTGGCTGCAGATGTGACTGTAGGGATGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 ENSMUST00000216837.2 |
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| 3UTR-3UTR GCA 90 bp | TGGCTGAGGAGACAGGAGGTCCCACAGCTATTCCTTGCCTGGATGTCAGGAACCCCCTACAGTCACATCTaGAGCCACGAAATCTACTCA | + |
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Preference number: 2 (lower is better) Translates to: WLRRQEVPQLFLAWMSGTPYSHI*SHEIYS Trigger: TGAGTAGATTTCGTGGCTGCAGATGTGACTGTAGGG...GGTTCCTGACATCCAGGCAAGGAATAGCTGTGGGACCTCCTGTCTCCTCAGCCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 |
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| 3UTR-3UTR GCA 90 bp | CCAGTAGCCTCGACCACAAGCACTAGGAGACTGGGAAGGACAGAAAGTCTAGGTCCCTACAGTCACATCTaGAGCCACGAAATCTACTCA | + |
|
Preference number: 2 (lower is better) Translates to: PVASTTSTRRLGRTESLGPYSHI*SHEIYS Trigger: TGAGTAGATTTCGTGGCTGCAGATGTGACTGTAGGG...ACCTAGACTTTCTGTCCTTCCCAGTCTCCTAGTGCTTGTGGTCGAGGCTACTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 |
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| 3UTR CCA 72 bp | GGTGTTCCCCAGCCGAGCCCAGCCAGGGGACCTGGGTaGCCAGTAGCCTCGACCACAAGCACTAGGAGACTG | + |
|
Preference number: 3 (lower is better) Translates to: GVPQPSPARGPG*PVASTTSTRRL Trigger: CAGTCTCCTAGTGCTTGTGGTCGAGGCTACTGGCCACCCAGGTCCCCTGGCTGGGCTCGGCTGGGGAACACC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 |
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| 3UTR-3UTR CAA 90 bp | GGCCACCCTGGGCTGCTTGGTGAGACCCAGTGTCGCTCGCCTCCATCCCTACAGTGGAATGTCTCTGGATaGGTAGCCAGATGGGGGCTG | + |
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Preference number: 3 (lower is better) Translates to: GHPGLLGETQCRSPPSLQWNVSG*VARWGL Trigger: CAGCCCCCATCTGGCTACCAATCCAGAGACATTCCA...CTGTAGGGATGGAGGCGAGCGACACTGGGTCTCACCAAGCAGCCCAGGGTGGCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 ENSMUST00000216837.2 |
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| 3UTR TCA 72 bp | GAAGATGGGAGCAACTCAAAGGCTTGTAGAGTCACCTaGGGCTCAGGGTTCCATGAGGCCACCCTGGGCTGC | + |
|
Preference number: 3 (lower is better) Translates to: EDGSNSKACRVT*GSGFHEATLGC Trigger: GCAGCCCAGGGTGGCCTCATGGAACCCTGAGCCTCAGGTGACTCTACAAGCCTTTGAGTTGCTCCCATCTTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 |
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| 3UTR GCA 72 bp | GTGGCTGAGGAGACAGGAGGTCCCACAGCTATTCCTTaGCTGGATGTCAGGAACCGTCACCAGAGAAGACAG | + |
|
Preference number: 3 (lower is better) Translates to: VAEETGGPTAIP*LDVRNRHQRRQ Trigger: CTGTCTTCTCTGGTGACGGTTCCTGACATCCAGGCAAGGAATAGCTGTGGGACCTCCTGTCTCCTCAGCCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 |
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| 3UTR CCA 72 bp | CTGAGGAGACAGGAGGTCCCACAGCTATTCCTTGCCTaGATGTCAGGAACCGTCACCAGAGAAGACAGGAGC | + |
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Preference number: 3 (lower is better) Translates to: LRRQEVPQLFLA*MSGTVTREDRS Trigger: GCTCCTGTCTTCTCTGGTGACGGTTCCTGACATCCAGGCAAGGAATAGCTGTGGGACCTCCTGTCTCCTCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 |
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| 3UTR CCA 72 bp | GAAAGTCTAGGTCCCAAGGGCAAGGTGCTGGTGAGGTaGCTGAGGAGACAGGAGGTCCCACAGCTATTCCTT | + |
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Preference number: 3 (lower is better) Translates to: ESLGPKGKVLVR*LRRQEVPQLFL Trigger: AAGGAATAGCTGTGGGACCTCCTGTCTCCTCAGCCACCTCACCAGCACCTTGCCCTTGGGACCTAGACTTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 |
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| 3UTR GCA 72 bp | CCCAGTGTCGCTCGCCTCCATCCCTACAGTCACATCTaGAGCCACGAAATCTACTCACTCACATCCATCCCA | + |
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Preference number: 3 (lower is better) Translates to: PSVARLHPYSHI*SHEIYSLTSIP Trigger: TGGGATGGATGTGAGTGAGTAGATTTCGTGGCTGCAGATGTGACTGTAGGGATGGAGGCGAGCGACACTGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 ENSMUST00000216837.2 |
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| CDS-3UTR TCA 90 bp | GGGCTGCTTGGTGAGACCCAGTGTCGCTCGCCTCCATCCCTACAGTCACATCTGTGCAGAAAGGGCAGGTaGACTGGGTCTCCAGGGTGC | + |
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Preference number: 4 (lower is better) Translates to: GLLGETQCRSPPSLQSHLCRKGR*TGSPGC Trigger: GCACCCTGGAGACCCAGTTCACCTGCCCTTTCTGCA...CAGATGTGACTGTAGGGATGGAGGCGAGCGACACTGGGTCTCACCAAGCAGCCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 ENSMUST00000216837.2 |
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| CDS-3UTR TCA 90 bp | ACTCACTCACATCCATCCCATCTGCAGAGGGCGGGCTGTCCTAGCCCTGGAATGTGCAGAAAGGGCAGGTaGACTGGGTCTCCAGGGTGC | + |
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Preference number: 4 (lower is better) Translates to: THSHPSHLQRAGCPSPGMCRKGR*TGSPGC Trigger: GCACCCTGGAGACCCAGTTCACCTGCCCTTTCTGCA...CATTCCAGGGCTAGGACAGCCCGCCCTCTGCAGATGGGATGGATGTGAGTGAGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 ENSMUST00000214394.2 ENSMUST00000216837.2 |
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| CDS-3UTR TCA 90 bp | CTCACTCACATCCATCCCATCTGCAGAGGGCGGGCTGTCCTAGCCCTGGAATGTTGCAGAAAGGGCAGGTaGACTGGGTCTCCAGGGTGC | + |
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Preference number: 4 (lower is better) Translates to: LTHIHPICRGRAVLALECCRKGR*TGSPGC Trigger: GCACCCTGGAGACCCAGTTCACCTGCCCTTTCTGCA...ACATTCCAGGGCTAGGACAGCCCGCCCTCTGCAGATGGGATGGATGTGAGTGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 ENSMUST00000213233.2 ENSMUST00000214394.2 ENSMUST00000216837.2 |
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| CDS-3UTR TCA 90 bp | ATCTGCAGAGGGCGGGCTGTCCTAGCCCTGGAATGTCTCTGGATTGGTAGCCAGTGCAGAAAGGGCAGGTaGACTGGGTCTCCAGGGTGC | + |
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Preference number: 4 (lower is better) Translates to: ICRGRAVLALECLWIGSQCRKGR*TGSPGC Trigger: GCACCCTGGAGACCCAGTTCACCTGCCCTTTCTGCA...CTGGCTACCAATCCAGAGACATTCCAGGGCTAGGACAGCCCGCCCTCTGCAGAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 ENSMUST00000213233.2 ENSMUST00000214394.2 ENSMUST00000216837.2 |
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| CDS-3UTR CCA 90 bp | ACTCACATCCATCCCATCTGCAGAGGGCGGGCTGTCCTAGCCCTGGAATGTCTCAAAGGGCAGGTGAACTaGGTCTCCAGGGTGCCTGTC | + |
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Preference number: 4 (lower is better) Translates to: THIHPICRGRAVLALECLKGQVN*VSRVPV Trigger: GACAGGCACCCTGGAGACCCAGTTCACCTGCCCTTT...GAGACATTCCAGGGCTAGGACAGCCCGCCCTCTGCAGATGGGATGGATGTGAGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 ENSMUST00000213233.2 ENSMUST00000214394.2 ENSMUST00000216837.2 |
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| CDS-3UTR CCA 90 bp | ACTCACTCACATCCATCCCATCTGCAGAGGGCGGGCTGTCCTAGCCCTGGAATGAAAGGGCAGGTGAACTaGGTCTCCAGGGTGCCTGTC | + |
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Preference number: 4 (lower is better) Translates to: THSHPSHLQRAGCPSPGMKGQVN*VSRVPV Trigger: GACAGGCACCCTGGAGACCCAGTTCACCTGCCCTTT...CATTCCAGGGCTAGGACAGCCCGCCCTCTGCAGATGGGATGGATGTGAGTGAGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 ENSMUST00000214394.2 ENSMUST00000216837.2 |
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| CDS-3UTR CCA 90 bp | AATCTACTCACTCACATCCATCCCATCTGCAGAGGGCGGGCTGTCCTAGCCCTGAAAGGGCAGGTGAACTaGGTCTCCAGGGTGCCTGTC | + |
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Preference number: 4 (lower is better) Translates to: NLLTHIHPICRGRAVLALKGQVN*VSRVPV Trigger: GACAGGCACCCTGGAGACCCAGTTCACCTGCCCTTT...CAGGGCTAGGACAGCCCGCCCTCTGCAGATGGGATGGATGTGAGTGAGTAGATT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 ENSMUST00000216837.2 |
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| CDS-3UTR CCA 90 bp | AAATCTACTCACTCACATCCATCCCATCTGCAGAGGGCGGGCTGTCCTAGCCCTAAAGGGCAGGTGAACTaGGTCTCCAGGGTGCCTGTC | + |
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Preference number: 4 (lower is better) Translates to: KSTHSHPSHLQRAGCPSPKGQVN*VSRVPV Trigger: GACAGGCACCCTGGAGACCCAGTTCACCTGCCCTTT...AGGGCTAGGACAGCCCGCCCTCTGCAGATGGGATGGATGTGAGTGAGTAGATTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 ENSMUST00000216837.2 |
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| CDS-3UTR TCA 90 bp | GGGTGGCCAGTAGCCTCGACCACAAGCACTAGGAGACTGGGAAGGACAGAAAGTCACATCCACTGGTTCTaGCAGGTATGTGATGGGTGT | + |
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Preference number: 4 (lower is better) Translates to: GWPVASTTSTRRLGRTESHIHWF*QVCDGC Trigger: ACACCCATCACATACCTGTCAGAACCAGTGGATGTG...ACTTTCTGTCCTTCCCAGTCTCCTAGTGCTTGTGGTCGAGGCTACTGGCCACCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 |
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| CDS-3UTR CCA 90 bp | GCCTCCATCCCTACAGTCACATCTGCAGCCACGAAATCTACTCACTCACATCCAAAAGGGCAGGTGAACTaGGTCTCCAGGGTGCCTGTC | + |
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Preference number: 4 (lower is better) Translates to: ASIPTVTSAATKSTHSHPKGQVN*VSRVPV Trigger: GACAGGCACCCTGGAGACCCAGTTCACCTGCCCTTT...TGGATGTGAGTGAGTAGATTTCGTGGCTGCAGATGTGACTGTAGGGATGGAGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 ENSMUST00000216837.2 |
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| CDS-3UTR CCA 90 bp | ATCTGCAGAGGGCGGGCTGTCCTAGCCCTGGAATGTCTCTGGATTGGTAGCCAGTATGTGATGGGTGTCTaGAATTCCTCTAGGCACACA | + |
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Preference number: 4 (lower is better) Translates to: ICRGRAVLALECLWIGSQYVMGV*NSSRHT Trigger: TGTGTGCCTAGAGGAATTCCAGACACCCATCACATA...CTGGCTACCAATCCAGAGACATTCCAGGGCTAGGACAGCCCGCCCTCTGCAGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 ENSMUST00000213233.2 ENSMUST00000214394.2 ENSMUST00000216837.2 |
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| CDS-3UTR CCA 90 bp | ACTAGGAGACTGGGAAGGACAGAAAGTCTAGGTCCCAAGGGCAAGGTGCTGGTGTATGTGATGGGTGTCTaGAATTCCTCTAGGCACACA | + |
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Preference number: 4 (lower is better) Translates to: TRRLGRTESLGPKGKVLVYVMGV*NSSRHT Trigger: TGTGTGCCTAGAGGAATTCCAGACACCCATCACATA...CACCAGCACCTTGCCCTTGGGACCTAGACTTTCTGTCCTTCCCAGTCTCCTAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 |
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| CDS-3UTR CCA 90 bp | TCCCACAGCTATTCCTTGCCTGGATGTCAGGAACCGTCACCAGAGAAGACAGGATATGTGATGGGTGTCTaGAATTCCTCTAGGCACACA | + |
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Preference number: 4 (lower is better) Translates to: SHSYSLPGCQEPSPEKTGYVMGV*NSSRHT Trigger: TGTGTGCCTAGAGGAATTCCAGACACCCATCACATA...TCCTGTCTTCTCTGGTGACGGTTCCTGACATCCAGGCAAGGAATAGCTGTGGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 |
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| CDS-3UTR CCA 90 bp | ACAGTCACATCTGCAGCCACGAAATCTACTCACTCACATCCATCCCATCTGCAGTATGTGATGGGTGTCTaGAATTCCTCTAGGCACACA | + |
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Preference number: 4 (lower is better) Translates to: TVTSAATKSTHSHPSHLQYVMGV*NSSRHT Trigger: TGTGTGCCTAGAGGAATTCCAGACACCCATCACATA...CTGCAGATGGGATGGATGTGAGTGAGTAGATTTCGTGGCTGCAGATGTGACTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 ENSMUST00000216837.2 |
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| CDS-3UTR CAA 90 bp | ACTCACTCACATCCATCCCATCTGCAGAGGGCGGGCTGTCCTAGCCCTGGAATGCTGTCATCTTCTTTTTaGGGGGCGGCTTCCGTTTGG | + |
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Preference number: 5 (lower is better) Translates to: THSHPSHLQRAGCPSPGMLSSSF*GAASVW Trigger: CCAAACGGAAGCCGCCCCCAAAAAAGAAGATGACAG...CATTCCAGGGCTAGGACAGCCCGCCCTCTGCAGATGGGATGGATGTGAGTGAGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 4 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 ENSMUST00000214394.2 ENSMUST00000216837.2 |
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| CDS-3UTR CAA 90 bp | CTCACTCACATCCATCCCATCTGCAGAGGGCGGGCTGTCCTAGCCCTGGAATGTCTGTCATCTTCTTTTTaGGGGGCGGCTTCCGTTTGG | + |
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Preference number: 5 (lower is better) Translates to: LTHIHPICRGRAVLALECLSSSF*GAASVW Trigger: CCAAACGGAAGCCGCCCCCAAAAAAGAAGATGACAG...ACATTCCAGGGCTAGGACAGCCCGCCCTCTGCAGATGGGATGGATGTGAGTGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 5 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 ENSMUST00000213233.2 ENSMUST00000214394.2 ENSMUST00000216837.2 |
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| CDS-3UTR CAA 90 bp | ATCTGCAGAGGGCGGGCTGTCCTAGCCCTGGAATGTCTCTGGATTGGTAGCCAGCTGTCATCTTCTTTTTaGGGGGCGGCTTCCGTTTGG | + |
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Preference number: 5 (lower is better) Translates to: ICRGRAVLALECLWIGSQLSSSF*GAASVW Trigger: CCAAACGGAAGCCGCCCCCAAAAAAGAAGATGACAG...CTGGCTACCAATCCAGAGACATTCCAGGGCTAGGACAGCCCGCCCTCTGCAGAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 5 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 ENSMUST00000213233.2 ENSMUST00000214394.2 ENSMUST00000216837.2 |
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| CDS-3UTR CAA 90 bp | AATCTACTCACTCACATCCATCCCATCTGCAGAGGGCGGGCTGTCCTAGCCCTGCTGTCATCTTCTTTTTaGGGGGCGGCTTCCGTTTGG | + |
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Preference number: 5 (lower is better) Translates to: NLLTHIHPICRGRAVLALLSSSF*GAASVW Trigger: CCAAACGGAAGCCGCCCCCAAAAAAGAAGATGACAG...CAGGGCTAGGACAGCCCGCCCTCTGCAGATGGGATGGATGTGAGTGAGTAGATT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 ENSMUST00000216837.2 |
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| CDS TCA 72 bp | GTGTCTGGAATTCCTCTAGGCACACAGTACAGGAGATaGCTCCAGTGTTTCGAGCACGGTCCATTTTCACAT | + |
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Preference number: 6 (lower is better) Translates to: VSGIPLGTQYRR*LQCFEHGPFSH Trigger: ATGTGAAAATGGACCGTGCTCGAAACACTGGAGTCATCTCCTGTACTGTGTGCCTAGAGGAATTCCAGACAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 ENSMUST00000213233.2 ENSMUST00000214394.2 ENSMUST00000216837.2 |
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| CDS CCA 72 bp | ACATCCACTGGTTCTGACAGGTATGTGATGGGTGTCTaGAATTCCTCTAGGCACACAGTACAGGAGATGACT | + |
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Preference number: 6 (lower is better) Translates to: TSTGSDRYVMGV*NSSRHTVQEMT Trigger: AGTCATCTCCTGTACTGTGTGCCTAGAGGAATTCCAGACACCCATCACATACCTGTCAGAACCAGTGGATGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000013966.8 ENSMUST00000166335.2 ENSMUST00000213233.2 ENSMUST00000214394.2 ENSMUST00000216837.2 |
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