RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ELMOD2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035151

Ensembl transcript IDs: ENSMUST00000053902.4, ENSMUST00000139041.2, ENSMUST00000177594.8

Found 102 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TCCCTGACAGAGTCATGTGCCCTCTGCTCCAAGGACAGGACATCTTaGCAAGAGCTAAAGACACAAAGAAAGCCTCAGAGGGCACCCTGT +
Preference number: 1 (lower is better)
Translates to: SLTESCALCSKDRTS*QELKTQRKPQRAPC
Trigger: ACAGGGTGCCCTCTGAGGCTTTCTTTGTGTCTTTAGCTCTTGTCAAGATGTCCTGTCCTTGGAGCAGAGGGCACATGACTCTGTCAGGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR CCA 90 bp TTGAACCCATGCTCTGCAACACAGTGCTATACAACACTCCAGCTGTaGCTCTCTGATGGGACATCCGTACTGCACATGACTTTCTCATGC +
Preference number: 1 (lower is better)
Translates to: LNPCSATQCYTTLQL*LSDGTSVLHMTFSC
Trigger: GCATGAGAAAGTCATGTGCAGTACGGATGTCCCATCAGAGAGCCACAGCTGGAGTGTTGTATAGCACTGTGTTGCAGAGCATGGGTTCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR TCA 90 bp AGTGACCAGAAAAATCAAAAGGAAGCCATGATTGTCCACCTTCCCTaGCAGAGTCATGTGCCCTCTGCTCCAAGGACAGGACATCTTGAC +
Preference number: 1 (lower is better)
Translates to: SDQKNQKEAMIVHLP*QSHVPSAPRTGHLD
Trigger: GTCAAGATGTCCTGTCCTTGGAGCAGAGGGCACATGACTCTGTCAGGGAAGGTGGACAATCATGGCTTCCTTTTGATTTTTCTGGTCACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR GCA 90 bp ACTTGCTGCCCTCCTGAGACTTTGGAGAATAAAGCTATACAAAAATaGACAGTCATGATCCAGGCTATGGTAGCATGTCCCAGCCCACTA +
Preference number: 1 (lower is better)
Translates to: TCCPPETLENKAIQK*TVMIQAMVACPSPL
Trigger: TAGTGGGCTGGGACATGCTACCATAGCCTGGATCATGACTGTGCATTTTTGTATAGCTTTATTCTCCAAAGTCTCAGGAGGGCAGCAAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR GCA 90 bp TCTTCCTTAAGGAAAAGCAATTTGAACCCATGCTCTGCAACACAGTaGTATACAACACTCCAGCTGTGGCTCTCTGATGGGACATCCGTA +
Preference number: 1 (lower is better)
Translates to: SSLRKSNLNPCSATQ*YTTLQLWLSDGTSV
Trigger: TACGGATGTCCCATCAGAGAGCCACAGCTGGAGTGTTGTATAGCACTGTGTTGCAGAGCATGGGTTCAAATTGCTTTTCCTTAAGGAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR CCA 90 bp ACTAACACAGCTGCTTTCCATGGAGGACTTCACACTATAATACAGTaGACAACAATGGTAACCATGGGCTCCTTGTTAGGGTTTTGGTAC +
Preference number: 1 (lower is better)
Translates to: TNTAAFHGGLHTIIQ*TTMVTMGSLLGFWY
Trigger: GTACCAAAACCCTAACAAGGAGCCCATGGTTACCATTGTTGTCCACTGTATTATAGTGTGAAGTCCTCCATGGAAAGCAGCTGTGTTAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR CAA 90 bp TTCCCTGACAGAGTCATGTGCCCTCTGCTCCAAGGACAGGACATCTaGACAAGAGCTAAAGACACAAAGAAAGCCTCAGAGGGCACCCTG +
Preference number: 2 (lower is better)
Translates to: FPDRVMCPLLQGQDI*TRAKDTKKASEGTL
Trigger: CAGGGTGCCCTCTGAGGCTTTCTTTGTGTCTTTAGCTCTTGTCAAGATGTCCTGTCCTTGGAGCAGAGGGCACATGACTCTGTCAGGGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR-3UTR GCA 90 bp CAAAAATGCACAGTCATGATCCAGGCTATGGTAGCATGTCCCAGCCCACTAACCCCTGACAGAGTCATGTaGCCTCTGCTCCAAGGACAG +
Preference number: 2 (lower is better)
Translates to: QKCTVMIQAMVACPSPLTPDRVM*PLLQGQ
Trigger: CTGTCCTTGGAGCAGAGGGCACATGACTCTGTCAGG...GGTTAGTGGGCTGGGACATGCTACCATAGCCTGGATCATGACTGTGCATTTTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR-3UTR GCA 90 bp CCCCAGATGCACCATCCTTTGTGGATTAGAGTAGAGCACCTGTGCTGGGGATGCTGCTCTGCAACACAGTaGTATACAACACTCCAGCTG +
Preference number: 2 (lower is better)
Translates to: PQMHHPLWIRVEHLCWGCCSATQ*YTTLQL
Trigger: CAGCTGGAGTGTTGTATAGCACTGTGTTGCAGAGCA...GCATCCCCAGCACAGGTGCTCTACTCTAATCCACAAAGGATGGTGCATCTGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR-3UTR GCA 90 bp ATCCCCTCACATAGAATCCTCGACAATACTTGCTGCCCTCCTGAGACTTTGGAGGAGTCATGTGCCCTCTaGTCCAAGGACAGGACATCT +
Preference number: 2 (lower is better)
Translates to: IPSHRILDNTCCPPETLEESCAL*SKDRTS
Trigger: AGATGTCCTGTCCTTGGAGCAGAGGGCACATGACTC...CTCCAAAGTCTCAGGAGGGCAGCAAGTATTGTCGAGGATTCTATGTGAGGGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR-3UTR CCA 90 bp CTCCTTTCTAAACACACAGGCGGGGTTCTCCCAGGGGGCTCTGAGGAAGGTTCCAAACAAATACTGACCTaGAGTAAATGCCTAGACTCC +
Preference number: 2 (lower is better)
Translates to: LLSKHTGGVLPGGSEEGSKQILT*SKCLDS
Trigger: GGAGTCTAGGCATTTACTCCAGGTCAGTATTTGTTT...GGAACCTTCCTCAGAGCCCCCTGGGAGAACCCCGCCTGTGTGTTTAGAAAGGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR-3UTR TCA 90 bp CCCCAGATGCACCATCCTTTGTGGATTAGAGTAGAGCACCTGTGCTGGGGATGCCGTTTTAAAACTGCATaGAGTTCTGATGTCTGCTGC +
Preference number: 2 (lower is better)
Translates to: PQMHHPLWIRVEHLCWGCRFKTA*SSDVCC
Trigger: GCAGCAGACATCAGAACTTCATGCAGTTTTAAAACG...GCATCCCCAGCACAGGTGCTCTACTCTAATCCACAAAGGATGGTGCATCTGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR-3UTR CCA 90 bp CCCCAGATGCACCATCCTTTGTGGATTAGAGTAGAGCACCTGTGCTGGGGATGCCACAGCTGCTTTCCATaGAGGACTTCACACTATAAT +
Preference number: 2 (lower is better)
Translates to: PQMHHPLWIRVEHLCWGCHSCFP*RTSHYN
Trigger: ATTATAGTGTGAAGTCCTCCATGGAAAGCAGCTGTG...GCATCCCCAGCACAGGTGCTCTACTCTAATCCACAAAGGATGGTGCATCTGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR-3UTR TCA 90 bp CCCCAGATGCACCATCCTTTGTGGATTAGAGTAGAGCACCTGTGCTGGGGATGCTTCCAGAGCAAACAATaGCCCTGCAGAATTTTCAAA +
Preference number: 2 (lower is better)
Translates to: PQMHHPLWIRVEHLCWGCFQSKQ*PCRIFK
Trigger: TTTGAAAATTCTGCAGGGTCATTGTTTGCTCTGGAA...GCATCCCCAGCACAGGTGCTCTACTCTAATCCACAAAGGATGGTGCATCTGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR-3UTR TCA 90 bp ATCCCCTCACATAGAATCCTCGACAATACTTGCTGCCCTCCTGAGACTTTGGAGATCAAAAGGAAGCCATaGTTGTCCACCTTCCCTGAC +
Preference number: 2 (lower is better)
Translates to: IPSHRILDNTCCPPETLEIKRKP*LSTFPD
Trigger: GTCAGGGAAGGTGGACAATCATGGCTTCCTTTTGAT...CTCCAAAGTCTCAGGAGGGCAGCAAGTATTGTCGAGGATTCTATGTGAGGGGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR-3UTR CCA 90 bp CCCCAGATGCACCATCCTTTGTGGATTAGAGTAGAGCACCTGTGCTGGGGATGCGCCCTCCTGAGACTTTaGAGAATAAAGCTATACAAA +
Preference number: 2 (lower is better)
Translates to: PQMHHPLWIRVEHLCWGCALLRL*RIKLYK
Trigger: TTTGTATAGCTTTATTCTCCAAAGTCTCAGGAGGGC...GCATCCCCAGCACAGGTGCTCTACTCTAATCCACAAAGGATGGTGCATCTGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR-3UTR TCA 90 bp CAACACAGTGCTATACAACACTCCAGCTGTGGCTCTCTGATGGGACATCCGTACAAGGACAGGACATCTTaGCAAGAGCTAAAGACACAA +
Preference number: 2 (lower is better)
Translates to: QHSAIQHSSCGSLMGHPYKDRTS*QELKTQ
Trigger: TTGTGTCTTTAGCTCTTGTCAAGATGTCCTGTCCTT...GTACGGATGTCCCATCAGAGAGCCACAGCTGGAGTGTTGTATAGCACTGTGTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR-3UTR GCA 90 bp ACAACAATGGTAACCATGGGCTCCTTGTTAGGGTTTTGGTACACAATGCATCCTGAGTCATGTGCCCTCTaGTCCAAGGACAGGACATCT +
Preference number: 2 (lower is better)
Translates to: TTMVTMGSLLGFWYTMHPESCAL*SKDRTS
Trigger: AGATGTCCTGTCCTTGGAGCAGAGGGCACATGACTC...AGGATGCATTGTGTACCAAAACCCTAACAAGGAGCCCATGGTTACCATTGTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR CAA 90 bp GATCTTTCTCAGAGTGTGAAAGAGCCATCTTCATTTAAAAGCCATTaGTGTGGAGAGGCAGTACACATGAACGTGACGACAAAGCCTCCC +
Preference number: 2 (lower is better)
Translates to: DLSQSVKEPSSFKSH*CGEAVHMNVTTKPP
Trigger: GGGAGGCTTTGTCGTCACGTTCATGTGTACTGCCTCTCCACACAAATGGCTTTTAAATGAAGATGGCTCTTTCACACTCTGAGAAAGATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR-3UTR GCA 90 bp GAGCCATCTTCATTTAAAAGCCATTTGTGTGGAGAGGCAGTACACATGAACGTGCAAAGCCTCCCCAGATaGACCATCCTTTGTGGATTA +
Preference number: 2 (lower is better)
Translates to: EPSSFKSHLCGEAVHMNVQSLPR*TILCGL
Trigger: TAATCCACAAAGGATGGTGCATCTGGGGAGGCTTTG...CACGTTCATGTGTACTGCCTCTCCACACAAATGGCTTTTAAATGAAGATGGCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR-3UTR CCA 90 bp CAAAAATGCACAGTCATGATCCAGGCTATGGTAGCATGTCCCAGCCCACTAACCAGGGTAAGGGACCTTTaGAGAACAGTGTATAAACAA +
Preference number: 2 (lower is better)
Translates to: QKCTVMIQAMVACPSPLTRVRDL*RTVYKQ
Trigger: TTGTTTATACACTGTTCTCCAAAGGTCCCTTACCCT...GGTTAGTGGGCTGGGACATGCTACCATAGCCTGGATCATGACTGTGCATTTTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR-3UTR CCA 90 bp AATGGGATGAGTTTGGGTGAAATGGTGGCTTCTTGTAAAATATACTTTGAGTCTCTGGGGATGCAGCTGTaGCCCCCAGTTATGAGCACA +
Preference number: 2 (lower is better)
Translates to: NGMSLGEMVASCKIYFESLGMQL*PPVMST
Trigger: TGTGCTCATAACTGGGGGCCACAGCTGCATCCCCAG...AGACTCAAAGTATATTTTACAAGAAGCCACCATTTCACCCAAACTCATCCCATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000177594.8
3UTR CAA 90 bp GAGCTAAAGACACAAAGAAAGCCTCAGAGGGCACCCTGTGCTGATTaGCCTAGAAATAAAAAGACAAAGGGCATTCAAAAGCCACTTCCA +
Preference number: 2 (lower is better)
Translates to: ELKTQRKPQRAPCAD*PRNKKTKGIQKPLP
Trigger: TGGAAGTGGCTTTTGAATGCCCTTTGTCTTTTTATTTCTAGGCAAATCAGCACAGGGTGCCCTCTGAGGCTTTCTTTGTGTCTTTAGCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR-3UTR GCA 90 bp GAGCCATCTTCATTTAAAAGCCATTTGTGTGGAGAGGCAGTACACATGAACGTGGCAGAAATGAAGAGCTaGTTTTCACACCCAAGAAAT +
Preference number: 2 (lower is better)
Translates to: EPSSFKSHLCGEAVHMNVAEMKS*FSHPRN
Trigger: ATTTCTTGGGTGTGAAAAGCAGCTCTTCATTTCTGC...CACGTTCATGTGTACTGCCTCTCCACACAAATGGCTTTTAAATGAAGATGGCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR-3UTR CCA 90 bp ACAACAATGGTAACCATGGGCTCCTTGTTAGGGTTTTGGTACACAATGCATCCTGCCCTCCTGAGACTTTaGAGAATAAAGCTATACAAA +
Preference number: 2 (lower is better)
Translates to: TTMVTMGSLLGFWYTMHPALLRL*RIKLYK
Trigger: TTTGTATAGCTTTATTCTCCAAAGTCTCAGGAGGGC...AGGATGCATTGTGTACCAAAACCCTAACAAGGAGCCCATGGTTACCATTGTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR-3UTR TCA 90 bp GGTGAAATGGTGGCTTCTTGTAAAATATACTTTGAGTCTCAGAGCCACTTACTCAGGGACAGAATGATATaGATGATGGCTAACACTGAG +
Preference number: 2 (lower is better)
Translates to: GEMVASCKIYFESQSHLLRDRMI*MMANTE
Trigger: CTCAGTGTTAGCCATCATTCATATCATTCTGTCCCT...GAGTAAGTGGCTCTGAGACTCAAAGTATATTTTACAAGAAGCCACCATTTCACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177594.8
3UTR-3UTR TCA 90 bp TTTTTGTTTTGCTCTGAGAACAAATTGCTAAAGCATGCCAAGAGGAAACCACCCTTCCAGAGCAAACAATaGCCCTGCAGAATTTTCAAA +
Preference number: 2 (lower is better)
Translates to: FLFCSENKLLKHAKRKPPFQSKQ*PCRIFK
Trigger: TTTGAAAATTCTGCAGGGTCATTGTTTGCTCTGGAA...GGGTGGTTTCCTCTTGGCATGCTTTAGCAATTTGTTCTCAGAGCAAAACAAAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR-3UTR TCA 90 bp TCAACTGTTAAATGTTGTGGTTCTATTCTTATGCTGCTCTTGTCACTGGTGAAAAACTGCATGAAGTTCTaGTGTCTGCTGCAAGTAAGG +
Preference number: 2 (lower is better)
Translates to: STVKCCGSILMLLLSLVKNCMKF*CLLQVR
Trigger: CCTTACTTGCAGCAGACATCAGAACTTCATGCAGTT...TTTCACCAGTGACAAGAGCAGCATAAGAATAGAACCACAACATTTAACAGTTGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR CAA 90 bp TGGTCTAGGATCCATGATACCCAAGTGTCTCCCATGTTTAAAAGATaGTCTTTCAGAGCATCTCAACTGTTAAATGTTGTGGTTCTATTC +
Preference number: 2 (lower is better)
Translates to: WSRIHDTQVSPMFKR*SFRASQLLNVVVLF
Trigger: GAATAGAACCACAACATTTAACAGTTGAGATGCTCTGAAAGACAATCTTTTAAACATGGGAGACACTTGGGTATCATGGATCCTAGACCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR-3UTR GCA 90 bp TTTTTGTTTTGCTCTGAGAACAAATTGCTAAAGCATGCCAAGAGGAAACCACCCCACCCTGTGCTGATTTaGCTAGAAATAAAAAGACAA +
Preference number: 2 (lower is better)
Translates to: FLFCSENKLLKHAKRKPPHPVLI*LEIKRQ
Trigger: TTGTCTTTTTATTTCTAGGCAAATCAGCACAGGGTG...GGGTGGTTTCCTCTTGGCATGCTTTAGCAATTTGTTCTCAGAGCAAAACAAAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR-3UTR TCA 90 bp TCAACTGTTAAATGTTGTGGTTCTATTCTTATGCTGCTCTTGTCACTGGTGAAAACTGTAAACATACACTaGTTGTCCGCTAGCTTTCTT +
Preference number: 2 (lower is better)
Translates to: STVKCCGSILMLLLSLVKTVNIH*LSASFL
Trigger: AAGAAAGCTAGCGGACAATCAGTGTATGTTTACAGT...TTTCACCAGTGACAAGAGCAGCATAAGAATAGAACCACAACATTTAACAGTTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR-3UTR TCA 90 bp AATGGGATGAGTTTGGGTGAAATGGTGGCTTCTTGTAAAATATACTTTGAGTCTACTGTAAACATACACTaGTTGTCCGCTAGCTTTCTT +
Preference number: 2 (lower is better)
Translates to: NGMSLGEMVASCKIYFESTVNIH*LSASFL
Trigger: AAGAAAGCTAGCGGACAATCAGTGTATGTTTACAGT...AGACTCAAAGTATATTTTACAAGAAGCCACCATTTCACCCAAACTCATCCCATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177594.8
3UTR CAA 90 bp AGCATCTCAACTGTTAAATGTTGTGGTTCTATTCTTATGCTGCTCTaGTCACTGGTGAAATATTTTCATCGTCACATGTACAAGAATCCA +
Preference number: 2 (lower is better)
Translates to: SISTVKCCGSILMLL*SLVKYFHRHMYKNP
Trigger: TGGATTCTTGTACATGTGACGATGAAAATATTTCACCAGTGACAAGAGCAGCATAAGAATAGAACCACAACATTTAACAGTTGAGATGCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR-3UTR CCA 90 bp ACATCACAAACAAAAGGACGTCACATCTCACACTATTGCTTTTACATGAAATTCAGGGTAAGGGACCTTTaGAGAACAGTGTATAAACAA +
Preference number: 2 (lower is better)
Translates to: TSQTKGRHISHYCFYMKFRVRDL*RTVYKQ
Trigger: TTGTTTATACACTGTTCTCCAAAGGTCCCTTACCCT...GAATTTCATGTAAAAGCAATAGTGTGAGATGTGACGTCCTTTTGTTTGTGATGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR-3UTR CCA 90 bp ACATCACAAACAAAAGGACGTCACATCTCACACTATTGCTTTTACATGAAATTCTATTTACAAAGAGCCTaGTCTAGGATCCATGATACC +
Preference number: 2 (lower is better)
Translates to: TSQTKGRHISHYCFYMKFYLQRA*SRIHDT
Trigger: GGTATCATGGATCCTAGACCAGGCTCTTTGTAAATA...GAATTTCATGTAAAAGCAATAGTGTGAGATGTGACGTCCTTTTGTTTGTGATGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR-3UTR GCA 90 bp GACAGAAAACATGAACAAATTGTGAGAAAACAGCAAACTTTCCGCTATCACACAAAACTATGTTTCAAATaGAGTCCAGATTTTCTCAGC +
Preference number: 2 (lower is better)
Translates to: DRKHEQIVRKQQTFRYHTKLCFK*SPDFLS
Trigger: GCTGAGAAAATCTGGACTGCATTTGAAACATAGTTT...TGTGTGATAGCGGAAAGTTTGCTGTTTTCTCACAATTTGTTCATGTTTTCTGTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR CCA 72 bp GTGACGACAAAGCCTCCCCAGATGCACCATCCTTTGTaGATTAGAGTAGAGCACCTGTGCTGGGGATGCAGC +
Preference number: 3 (lower is better)
Translates to: VTTKPPQMHHPL*IRVEHLCWGCS
Trigger: GCTGCATCCCCAGCACAGGTGCTCTACTCTAATCCACAAAGGATGGTGCATCTGGGGAGGCTTTGTCGTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR-3UTR CAA 90 bp CCCCAGATGCACCATCCTTTGTGGATTAGAGTAGAGCACCTGTGCTGGGGATGCAGTGGGAAGACAGGCTaGACAGAAAACATGAACAAA +
Preference number: 3 (lower is better)
Translates to: PQMHHPLWIRVEHLCWGCSGKTG*TENMNK
Trigger: TTTGTTCATGTTTTCTGTCAAGCCTGTCTTCCCACT...GCATCCCCAGCACAGGTGCTCTACTCTAATCCACAAAGGATGGTGCATCTGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR TCA 72 bp AAAAATCAAAAGGAAGCCATGATTGTCCACCTTCCCTaGCAGAGTCATGTGCCCTCTGCTCCAAGGACAGGA +
Preference number: 3 (lower is better)
Translates to: KNQKEAMIVHLP*QSHVPSAPRTG
Trigger: TCCTGTCCTTGGAGCAGAGGGCACATGACTCTGTCAGGGAAGGTGGACAATCATGGCTTCCTTTTGATTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR GCA 72 bp AGGAAAAGCAATTTGAACCCATGCTCTGCAACACAGTaGTATACAACACTCCAGCTGTGGCTCTCTGATGGG +
Preference number: 3 (lower is better)
Translates to: RKSNLNPCSATQ*YTTLQLWLSDG
Trigger: CCCATCAGAGAGCCACAGCTGGAGTGTTGTATAGCACTGTGTTGCAGAGCATGGGTTCAAATTGCTTTTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR GCA 72 bp CAAAGCTCCATCTTCTATGCTGTTGCTCCCCTCTGCTaGAGAAATGAAGAGCTGCTTTTCACACCCAAGAAA +
Preference number: 3 (lower is better)
Translates to: QSSIFYAVAPLC*RNEELLFTPKK
Trigger: TTTCTTGGGTGTGAAAAGCAGCTCTTCATTTCTGCAGCAGAGGGGAGCAACAGCATAGAAGATGGAGCTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR CCA 72 bp GCTGCTTTCCATGGAGGACTTCACACTATAATACAGTaGACAACAATGGTAACCATGGGCTCCTTGTTAGGG +
Preference number: 3 (lower is better)
Translates to: AAFHGGLHTIIQ*TTMVTMGSLLG
Trigger: CCCTAACAAGGAGCCCATGGTTACCATTGTTGTCCACTGTATTATAGTGTGAAGTCCTCCATGGAAAGCAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR CCA 72 bp GTGTATGAATCACTTCTACCTTTGGTGAAAACGGGGTaGAATGGGATGAGTTTGGGTGAAATGGTGGCTTCT +
Preference number: 3 (lower is better)
Translates to: VYESLLPLVKTG*NGMSLGEMVAS
Trigger: AGAAGCCACCATTTCACCCAAACTCATCCCATTCCACCCCGTTTTCACCAAAGGTAGAAGTGATTCATACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177594.8
3UTR-3UTR CAA 90 bp CTGCTCCAAGGACAGGACATCTTGACAAGAGCTAAAGACACAAAGAAAGCCTCAGCACCCTGTGCTGATTaGCCTAGAAATAAAAAGACA +
Preference number: 3 (lower is better)
Translates to: LLQGQDILTRAKDTKKASAPCAD*PRNKKT
Trigger: TGTCTTTTTATTTCTAGGCAAATCAGCACAGGGTGC...TGAGGCTTTCTTTGTGTCTTTAGCTCTTGTCAAGATGTCCTGTCCTTGGAGCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR GCA 72 bp CCTCCTGAGACTTTGGAGAATAAAGCTATACAAAAATaGACAGTCATGATCCAGGCTATGGTAGCATGTCCC +
Preference number: 3 (lower is better)
Translates to: PPETLENKAIQK*TVMIQAMVACP
Trigger: GGGACATGCTACCATAGCCTGGATCATGACTGTGCATTTTTGTATAGCTTTATTCTCCAAAGTCTCAGGAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR GCA 72 bp ATCTTCCTTAAGGAAAAGCAATTTGAACCCATGCTCTaGAACACAGTGCTATACAACACTCCAGCTGTGGCT +
Preference number: 3 (lower is better)
Translates to: IFLKEKQFEPML*NTVLYNTPAVA
Trigger: AGCCACAGCTGGAGTGTTGTATAGCACTGTGTTGCAGAGCATGGGTTCAAATTGCTTTTCCTTAAGGAAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR-3UTR CAA 90 bp GAGCCATCTTCATTTAAAAGCCATTTGTGTGGAGAGGCAGTACACATGAACGTGGCACCCTGTGCTGATTaGCCTAGAAATAAAAAGACA +
Preference number: 3 (lower is better)
Translates to: EPSSFKSHLCGEAVHMNVAPCAD*PRNKKT
Trigger: TGTCTTTTTATTTCTAGGCAAATCAGCACAGGGTGC...CACGTTCATGTGTACTGCCTCTCCACACAAATGGCTTTTAAATGAAGATGGCTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR CCA 72 bp ACAACAATGGTAACCATGGGCTCCTTGTTAGGGTTTTaGTACACAATGCATCCTAAAACCTGGGTGACAAAA +
Preference number: 3 (lower is better)
Translates to: TTMVTMGSLLGF*YTMHPKTWVTK
Trigger: TTTTGTCACCCAGGTTTTAGGATGCATTGTGTACCAAAACCCTAACAAGGAGCCCATGGTTACCATTGTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR TCA 72 bp ACTAGTGACAGTCAAGCTCCCAGAAGATCAGAACTTTaGAGCTGGAATTGGCTAACACATCAGTTCACTATA +
Preference number: 3 (lower is better)
Translates to: TSDSQAPRRSEL*SWNWLTHQFTI
Trigger: TATAGTGAACTGATGTGTTAGCCAATTCCAGCTTCAAAGTTCTGATCTTCTGGGAGCTTGACTGTCACTAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR GCA 72 bp ATTAGAATCCCCTCACATAGAATCCTCGACAATACTTaGTGCCCTCCTGAGACTTTGGAGAATAAAGCTATA +
Preference number: 3 (lower is better)
Translates to: IRIPSHRILDNT*CPPETLENKAI
Trigger: TATAGCTTTATTCTCCAAAGTCTCAGGAGGGCAGCAAGTATTGTCGAGGATTCTATGTGAGGGGATTCTAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR GCA 72 bp GTTTTATCTTCCTTAAGGAAAAGCAATTTGAACCCATaGTCTGCAACACAGTGCTATACAACACTCCAGCTG +
Preference number: 3 (lower is better)
Translates to: VLSSLRKSNLNP*SATQCYTTLQL
Trigger: CAGCTGGAGTGTTGTATAGCACTGTGTTGCAGAGCATGGGTTCAAATTGCTTTTCCTTAAGGAAGATAAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR-3UTR CAA 90 bp AATGGGATGAGTTTGGGTGAAATGGTGGCTTCTTGTAAAATATACTTTGAGTCTAGTGGGAAGACAGGCTaGACAGAAAACATGAACAAA +
Preference number: 3 (lower is better)
Translates to: NGMSLGEMVASCKIYFESSGKTG*TENMNK
Trigger: TTTGTTCATGTTTTCTGTCAAGCCTGTCTTCCCACT...AGACTCAAAGTATATTTTACAAGAAGCCACCATTTCACCCAAACTCATCCCATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177594.8
3UTR-3UTR CAA 90 bp CTGTACTGTTACATTTATTTACAAAGAGCCTGGTCTAGGATCCATGATACCCAATTAAGGAAAAGCAATTaGAACCCATGCTCTGCAACA +
Preference number: 3 (lower is better)
Translates to: LYCYIYLQRAWSRIHDTQLRKSN*NPCSAT
Trigger: TGTTGCAGAGCATGGGTTCAAATTGCTTTTCCTTAA...TTGGGTATCATGGATCCTAGACCAGGCTCTTTGTAAATAAATGTAACAGTACAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR CCA 72 bp TTAACAAAACATAGAACTACTCTACCAACGTCAATGTaGTTGTTGGGTCCTACCTCCACTACATTTAAACTT +
Preference number: 3 (lower is better)
Translates to: LTKHRTTLPTSM*LLGPTSTTFKL
Trigger: AAGTTTAAATGTAGTGGAGGTAGGACCCAACAACCACATTGACGTTGGTAGAGTAGTTCTATGTTTTGTTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR GCA 72 bp GTAACTTTCTTGTACTTCAATGCCATTACTACCAATTaGTACATTGTAATTTTACAAGTCCTAGACACAGGG +
Preference number: 3 (lower is better)
Translates to: VTFLYFNAITTN*YIVILQVLDTG
Trigger: CCCTGTGTCTAGGACTTGTAAAATTACAATGTAGCAATTGGTAGTAATGGCATTGAAGTACAAGAAAGTTAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR CAA 72 bp AACGTGACGACAAAGCCTCCCCAGATGCACCATCCTTaGTGGATTAGAGTAGAGCACCTGTGCTGGGGATGC +
Preference number: 4 (lower is better)
Translates to: NVTTKPPQMHHP*WIRVEHLCWGC
Trigger: GCATCCCCAGCACAGGTGCTCTACTCTAATCCACAAAGGATGGTGCATCTGGGGAGGCTTTGTCGTCACGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
CDS-3UTR TCA 90 bp AACCATCACCTTCCTAGGCAAAGCTCCATCTTCTATGCTGTTGCTCCCCTCTGCTACCCTAATTTGGGGTaGTTTGAGCGGGAGAGAATC +
Preference number: 4 (lower is better)
Translates to: NHHLPRQSSIFYAVAPLCYPNLG*FERERI
Trigger: GATTCTCTCCCGCTCAAATCACCCCAAATTAGGGTA...GCAGAGGGGAGCAACAGCATAGAAGATGGAGCTTTGCCTAGGAAGGTGATGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
CDS-3UTR CCA 90 bp GAGCCATCTTCATTTAAAAGCCATTTGTGTGGAGAGGCAGTACACATGAACGTGTGTCTGCCCACTGCTTaGAGATCCGGGCCGTCAACT +
Preference number: 4 (lower is better)
Translates to: EPSSFKSHLCGEAVHMNVCLPTA*RSGPST
Trigger: AGTTGACGGCCCGGATCTCCAAGCAGTGGGCAGACA...CACGTTCATGTGTACTGCCTCTCCACACAAATGGCTTTTAAATGAAGATGGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
CDS-3UTR CCA 90 bp CCCCAGATGCACCATCCTTTGTGGATTAGAGTAGAGCACCTGTGCTGGGGATGCAAGAATACCCTAATTTaGGGTGATTTGAGCGGGAGA +
Preference number: 4 (lower is better)
Translates to: PQMHHPLWIRVEHLCWGCKNTLI*GDLSGR
Trigger: TCTCCCGCTCAAATCACCCCAAATTAGGGTATTCTT...GCATCCCCAGCACAGGTGCTCTACTCTAATCCACAAAGGATGGTGCATCTGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR CAA 72 bp AGAGTCATGTGCCCTCTGCTCCAAGGACAGGACATCTaGACAAGAGCTAAAGACACAAAGAAAGCCTCAGAG +
Preference number: 4 (lower is better)
Translates to: RVMCPLLQGQDI*TRAKDTKKASE
Trigger: CTCTGAGGCTTTCTTTGTGTCTTTAGCTCTTGTCAAGATGTCCTGTCCTTGGAGCAGAGGGCACATGACTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
CDS-3UTR TCA 90 bp CTGCTCCAAGGACAGGACATCTTGACAAGAGCTAAAGACACAAAGAAAGCCTCAGTATGCCCATGCCTCTaGAGTCTGTTTTGGGATCGT +
Preference number: 4 (lower is better)
Translates to: LLQGQDILTRAKDTKKASVCPCL*SLFWDR
Trigger: ACGATCCCAAAACAGACTTCAGAGGCATGGGCATAC...TGAGGCTTTCTTTGTGTCTTTAGCTCTTGTCAAGATGTCCTGTCCTTGGAGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
CDS-3UTR TCA 90 bp AAGTTCCAAACTGTAGTTCATGTACCTCCGGAAGGGCTCTTTGGAAGGGTAAGGTACCCTAATTTGGGGTaGTTTGAGCGGGAGAGAATC +
Preference number: 4 (lower is better)
Translates to: KFQTVVHVPPEGLFGRVRYPNLG*FERERI
Trigger: GATTCTCTCCCGCTCAAATCACCCCAAATTAGGGTA...CCTTACCCTTCCAAAGAGCCCTTCCGGAGGTACATGAACTACAGTTTGGAACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
CDS-3UTR CCA 90 bp CAACACAGTGCTATACAACACTCCAGCTGTGGCTCTCTGATGGGACATCCGTACCGTCAACTTTTTCGTTaGCATCAGAAGACTCCAAAG +
Preference number: 4 (lower is better)
Translates to: QHSAIQHSSCGSLMGHPYRQLFR*HQKTPK
Trigger: CTTTGGAGTCTTCTGATGCCAACGAAAAAGTTGACG...GTACGGATGTCCCATCAGAGAGCCACAGCTGGAGTGTTGTATAGCACTGTGTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
CDS-3UTR GCA 90 bp CTGCTCCAAGGACAGGACATCTTGACAAGAGCTAAAGACACAAAGAAAGCCTCACATTTCCCAGTCATCTaGCGTAAGAGCCATTTCATC +
Preference number: 4 (lower is better)
Translates to: LLQGQDILTRAKDTKKASHFPVI*RKSHFI
Trigger: GATGAAATGGCTCTTACGGCAGATGACTGGGAAATG...TGAGGCTTTCTTTGTGTCTTTAGCTCTTGTCAAGATGTCCTGTCCTTGGAGCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
CDS-3UTR CCA 90 bp TCTTATGCTGCTCTTGTCACTGGTGAAATATTTTCATCGTCACATGTACAAGAATGTCTGCCCACTGCTTaGAGATCCGGGCCGTCAACT +
Preference number: 4 (lower is better)
Translates to: SYAALVTGEIFSSSHVQECLPTA*RSGPST
Trigger: AGTTGACGGCCCGGATCTCCAAGCAGTGGGCAGACA...TTCTTGTACATGTGACGATGAAAATATTTCACCAGTGACAAGAGCAGCATAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
CDS-3UTR CCA 90 bp CTGCTCCAAGGACAGGACATCTTGACAAGAGCTAAAGACACAAAGAAAGCCTCACGTCAACTTTTTCGTTaGCATCAGAAGACTCCAAAG +
Preference number: 4 (lower is better)
Translates to: LLQGQDILTRAKDTKKASRQLFR*HQKTPK
Trigger: CTTTGGAGTCTTCTGATGCCAACGAAAAAGTTGACG...TGAGGCTTTCTTTGTGTCTTTAGCTCTTGTCAAGATGTCCTGTCCTTGGAGCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
CDS-3UTR GCA 90 bp TCAAGCTCCCAGAAGATCAGAACTTTGAAGCTGGAATTGGCTAACACATCAGTTCATTTCCCAGTCATCTaGCGTAAGAGCCATTTCATC +
Preference number: 4 (lower is better)
Translates to: SSSQKIRTLKLELANTSVHFPVI*RKSHFI
Trigger: GATGAAATGGCTCTTACGGCAGATGACTGGGAAATG...AACTGATGTGTTAGCCAATTCCAGCTTCAAAGTTCTGATCTTCTGGGAGCTTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR CAA 72 bp ACACAAAGAAAGCCTCAGAGGGCACCCTGTGCTGATTaGCCTAGAAATAAAAAGACAAAGGGCATTCAAAAG +
Preference number: 4 (lower is better)
Translates to: TQRKPQRAPCAD*PRNKKTKGIQK
Trigger: CTTTTGAATGCCCTTTGTCTTTTTATTTCTAGGCAAATCAGCACAGGGTGCCCTCTGAGGCTTTCTTTGTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
CDS-3UTR TCA 90 bp TCTTATGCTGCTCTTGTCACTGGTGAAATATTTTCATCGTCACATGTACAAGAAGTATGCCCATGCCTCTaGAGTCTGTTTTGGGATCGT +
Preference number: 4 (lower is better)
Translates to: SYAALVTGEIFSSSHVQEVCPCL*SLFWDR
Trigger: ACGATCCCAAAACAGACTTCAGAGGCATGGGCATAC...TTCTTGTACATGTGACGATGAAAATATTTCACCAGTGACAAGAGCAGCATAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR CAA 72 bp AGAATCCTCGACAATACTTGCTGCCCTCCTGAGACTTaGGAGAATAAAGCTATACAAAAATGCACAGTCATG +
Preference number: 4 (lower is better)
Translates to: RILDNTCCPPET*ENKAIQKCTVM
Trigger: CATGACTGTGCATTTTTGTATAGCTTTATTCTCCAAAGTCTCAGGAGGGCAGCAAGTATTGTCGAGGATTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
CDS-3UTR CCA 90 bp TTTTTGTTTTGCTCTGAGAACAAATTGCTAAAGCATGCCAAGAGGAAACCACCCGTACATAATGCTTTCTaGCTCTTCCTCAAGCCAAAA +
Preference number: 4 (lower is better)
Translates to: FLFCSENKLLKHAKRKPPVHNAF*LFLKPK
Trigger: TTTTGGCTTGAGGAAGAGCCAGAAAGCATTATGTAC...GGGTGGTTTCCTCTTGGCATGCTTTAGCAATTTGTTCTCAGAGCAAAACAAAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
CDS-3UTR CCA 90 bp GGTGAAATGGTGGCTTCTTGTAAAATATACTTTGAGTCTCAGAGCCACTTACTCGTACATAATGCTTTCTaGCTCTTCCTCAAGCCAAAA +
Preference number: 4 (lower is better)
Translates to: GEMVASCKIYFESQSHLLVHNAF*LFLKPK
Trigger: TTTTGGCTTGAGGAAGAGCCAGAAAGCATTATGTAC...GAGTAAGTGGCTCTGAGACTCAAAGTATATTTTACAAGAAGCCACCATTTCACC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177594.8
3UTR CAA 72 bp GTTTGGGTGAAATGGTGGCTTCTTGTAAAATATACTTaGAGTCTCAGAGCCACTTACTCTGAGCCAATATCA +
Preference number: 4 (lower is better)
Translates to: VWVKWWLLVKYT*SLRATYSEPIS
Trigger: TGATATTGGCTCAGAGTAAGTGGCTCTGAGACTCAAAGTATATTTTACAAGAAGCCACCATTTCACCCAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177594.8
3UTR CAA 72 bp ATCCATGATACCCAAGTGTCTCCCATGTTTAAAAGATaGTCTTTCAGAGCATCTCAACTGTTAAATGTTGTG +
Preference number: 4 (lower is better)
Translates to: IHDTQVSPMFKR*SFRASQLLNVV
Trigger: CACAACATTTAACAGTTGAGATGCTCTGAAAGACAATCTTTTAAACATGGGAGACACTTGGGTATCATGGAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
3UTR CAA 72 bp ACAAAACATAGAACTACTCTACCAACGTCAATGTGGTaGTTGGGTCCTACCTCCACTACATTTAAACTTTTA +
Preference number: 4 (lower is better)
Translates to: TKHRTTLPTSMW*LGPTSTTFKLL
Trigger: TAAAAGTTTAAATGTAGTGGAGGTAGGACCCAACAACCACATTGACGTTGGTAGAGTAGTTCTATGTTTTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
CDS CCA 90 bp AATGTCTGCCCACTGCTTGGAGATCCGGGCCGTCAACTTTTTCGTTaGCATCAGAAGACTCCAAAGCTTGAGGAGCATCTTCTCGTGCTG +
Preference number: 5 (lower is better)
Translates to: NVCPLLGDPGRQLFR*HQKTPKLEEHLLVL
Trigger: CAGCACGAGAAGATGCTCCTCAAGCTTTGGAGTCTTCTGATGCCAACGAAAAAGTTGACGGCCCGGATCTCCAAGCAGTGGGCAGACATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000053902.4
ENSMUST00000139041.2
ENSMUST00000177594.8
CDS GCA 90 bp AAGTCTGTTTTGGGATCGTCACCTTGGAAACCAATGTCTGCCCACTaGTTGGAGATCCGGGCCGTCAACTTTTTCGTTGGCATCAGAAGA +
Preference number: 5 (lower is better)
Translates to: KSVLGSSPWKPMSAH*LEIRAVNFFVGIRR
Trigger: TCTTCTGATGCCAACGAAAAAGTTGACGGCCCGGATCTCCAAGCAGTGGGCAGACATTGGTTTCCAAGGTGACGATCCCAAAACAGACTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000053902.4
ENSMUST00000139041.2
ENSMUST00000177594.8
CDS CCA 90 bp TTCATAGACAAGGTAACAGTAAAACTGGTGGAAGTGCTCCATCGTTaGTACCCCAGGGACAAAGTTGTAGAGGTGAAGCTTCAGGGCCTC +
Preference number: 5 (lower is better)
Translates to: FIDKVTVKLVEVLHR*YPRDKVVEVKLQGL
Trigger: GAGGCCCTGAAGCTTCACCTCTACAACTTTGTCCCTGGGGTACCAACGATGGAGCACTTCCACCAGTTTTACTGTTACCTTGTCTATGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
CDS-3UTR CAA 90 bp CAACACAGTGCTATACAACACTCCAGCTGTGGCTCTCTGATGGGACATCCGTACAAAGTGAGCACAGCATaGCAATCCATCAAGAGTCCT +
Preference number: 5 (lower is better)
Translates to: QHSAIQHSSCGSLMGHPYKVSTA*QSIKSP
Trigger: AGGACTCTTGATGGATTGCAATGCTGTGCTCACTTT...GTACGGATGTCCCATCAGAGAGCCACAGCTGGAGTGTTGTATAGCACTGTGTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
CDS-3UTR CAA 90 bp CTGCTCCAAGGACAGGACATCTTGACAAGAGCTAAAGACACAAAGAAAGCCTCATGCAGATCTGAAAACTaGTGTCCTTCTCGGAGCAGA +
Preference number: 5 (lower is better)
Translates to: LLQGQDILTRAKDTKKASCRSEN*CPSRSR
Trigger: TCTGCTCCGAGAAGGACACAAGTTTTCAGATCTGCA...TGAGGCTTTCTTTGTGTCTTTAGCTCTTGTCAAGATGTCCTGTCCTTGGAGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
CDS-3UTR CAA 90 bp ACAACAATGGTAACCATGGGCTCCTTGTTAGGGTTTTGGTACACAATGCATCCTAGAAGACTCCAAAGCTaGAGGAGCATCTTCTCGTGC +
Preference number: 5 (lower is better)
Translates to: TTMVTMGSLLGFWYTMHPRRLQS*RSIFSC
Trigger: GCACGAGAAGATGCTCCTCAAGCTTTGGAGTCTTCT...AGGATGCATTGTGTACCAAAACCCTAACAAGGAGCCCATGGTTACCATTGTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
CDS GCA 90 bp GGTAGAGCTGTTTATAGCCAGTTATCTGCAGTAAGCACGTCCGCATaGAGATCTGAAAACTTGTGTCCTTCTCGGAGCAGATGTTCTTTT +
Preference number: 5 (lower is better)
Translates to: GRAVYSQLSAVSTSA*RSENLCPSRSRCSF
Trigger: AAAAGAACATCTGCTCCGAGAAGGACACAAGTTTTCAGATCTGCATGCGGACGTGCTTACTGCAGATAACTGGCTATAAACAGCTCTACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053902.4
ENSMUST00000139041.2
ENSMUST00000177594.8
CDS TCA 90 bp GTGAGCACAGCATTGCAATCCATCAAGAGTCCTTTGATCCGCTCGTaGAACTTCTCTCTGTACAAGTTGAAGTACATAATGCTTTCTGGC +
Preference number: 5 (lower is better)
Translates to: VSTALQSIKSPLIRS*NFSLYKLKYIMLSG
Trigger: GCCAGAAAGCATTATGTACTTCAACTTGTACAGAGAGAAGTTTCACGAGCGGATCAAAGGACTCTTGATGGATTGCAATGCTGTGCTCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
CDS CCA 90 bp GTTCACTCTGGGCAACTCGTGTTGCATTCTGTAGGACCTTATTCTTaGAATATGTCAAGGAATTTTCTATTCTGTAGGTCCTCTGTGCCC +
Preference number: 5 (lower is better)
Translates to: VHSGQLVLHSVGPYS*NMSRNFLFCRSSVP
Trigger: GGGCACAGAGGACCTACAGAATAGAAAATTCCTTGACATATTCCAAGAATAAGGTCCTACAGAATGCAACACGAGTTGCCCAGAGTGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053902.4
ENSMUST00000139041.2
ENSMUST00000177594.8
CDS-3UTR CAA 90 bp TTTTTGTTTTGCTCTGAGAACAAATTGCTAAAGCATGCCAAGAGGAAACCACCCTTTGGGATCGTCACCTaGGAAACCAATGTCTGCCCA +
Preference number: 5 (lower is better)
Translates to: FLFCSENKLLKHAKRKPPFGIVT*ETNVCP
Trigger: TGGGCAGACATTGGTTTCCAAGGTGACGATCCCAAA...GGGTGGTTTCCTCTTGGCATGCTTTAGCAATTTGTTCTCAGAGCAAAACAAAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
CDS-3UTR CAA 90 bp GAGCCATCTTCATTTAAAAGCCATTTGTGTGGAGAGGCAGTACACATGAACGTGAAAGTGAGCACAGCATaGCAATCCATCAAGAGTCCT +
Preference number: 5 (lower is better)
Translates to: EPSSFKSHLCGEAVHMNVKVSTA*QSIKSP
Trigger: AGGACTCTTGATGGATTGCAATGCTGTGCTCACTTT...CACGTTCATGTGTACTGCCTCTCCACACAAATGGCTTTTAAATGAAGATGGCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
CDS CCA 90 bp TTCTTTTCCTTCATGATGTTCGCTATACACCTGTCCAGTTCACTCTaGGCAACTCGTGTTGCATTCTGTAGGACCTTATTCTTGGAATAT +
Preference number: 5 (lower is better)
Translates to: FFSFMMFAIHLSSSL*ATRVAFCRTLFLEY
Trigger: ATATTCCAAGAATAAGGTCCTACAGAATGCAACACGAGTTGCCCAGAGTGAACTGGACAGGTGTATAGCGAACATCATGAAGGAAAAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053902.4
ENSMUST00000139041.2
ENSMUST00000177594.8
CDS-3UTR CAA 90 bp AATGGGATGAGTTTGGGTGAAATGGTGGCTTCTTGTAAAATATACTTTGAGTCTTGCAGATCTGAAAACTaGTGTCCTTCTCGGAGCAGA +
Preference number: 5 (lower is better)
Translates to: NGMSLGEMVASCKIYFESCRSEN*CPSRSR
Trigger: TCTGCTCCGAGAAGGACACAAGTTTTCAGATCTGCA...AGACTCAAAGTATATTTTACAAGAAGCCACCATTTCACCCAAACTCATCCCATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177594.8
CDS-3UTR CAA 90 bp ACATCACAAACAAAAGGACGTCACATCTCACACTATTGCTTTTACATGAAATTCAGAAGACTCCAAAGCTaGAGGAGCATCTTCTCGTGC +
Preference number: 5 (lower is better)
Translates to: TSQTKGRHISHYCFYMKFRRLQS*RSIFSC
Trigger: GCACGAGAAGATGCTCCTCAAGCTTTGGAGTCTTCT...GAATTTCATGTAAAAGCAATAGTGTGAGATGTGACGTCCTTTTGTTTGTGATGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
CDS GCA 72 bp TTGGGATCGTCACCTTGGAAACCAATGTCTGCCCACTaGTTGGAGATCCGGGCCGTCAACTTTTTCGTTGGC +
Preference number: 6 (lower is better)
Translates to: LGSSPWKPMSAH*LEIRAVNFFVG
Trigger: GCCAACGAAAAAGTTGACGGCCCGGATCTCCAAGCAGTGGGCAGACATTGGTTTCCAAGGTGACGATCCCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000053902.4
ENSMUST00000139041.2
ENSMUST00000177594.8
CDS CAA 72 bp GGATCGTCACCTTGGAAACCAATGTCTGCCCACTGCTaGGAGATCCGGGCCGTCAACTTTTTCGTTGGCATC +
Preference number: 6 (lower is better)
Translates to: GSSPWKPMSAHC*EIRAVNFFVGI
Trigger: GATGCCAACGAAAAAGTTGACGGCCCGGATCTCCAAGCAGTGGGCAGACATTGGTTTCCAAGGTGACGATCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000053902.4
ENSMUST00000139041.2
ENSMUST00000177594.8
CDS CAA 90 bp TCTGTTTTGGGATCGTCACCTTGGAAACCAATGTCTGCCCACTGCTaGGAGATCCGGGCCGTCAACTTTTTCGTTGGCATCAGAAGACTC +
Preference number: 6 (lower is better)
Translates to: SVLGSSPWKPMSAHC*EIRAVNFFVGIRRL
Trigger: GAGTCTTCTGATGCCAACGAAAAAGTTGACGGCCCGGATCTCCAAGCAGTGGGCAGACATTGGTTTCCAAGGTGACGATCCCAAAACAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000053902.4
ENSMUST00000139041.2
ENSMUST00000177594.8
CDS CAA 72 bp GTCAACTTTTTCGTTGGCATCAGAAGACTCCAAAGCTaGAGGAGCATCTTCTCGTGCTGTGCATTGGCAGAG +
Preference number: 6 (lower is better)
Translates to: VNFFVGIRRLQS*RSIFSCCALAE
Trigger: CTCTGCCAATGCACAGCACGAGAAGATGCTCCTCAAGCTTTGGAGTCTTCTGATGCCAACGAAAAAGTTGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000053902.4
ENSMUST00000139041.2
ENSMUST00000177594.8
CDS CAA 90 bp ATTCATAGACAAGGTAACAGTAAAACTGGTGGAAGTGCTCCATCGTaGGTACCCCAGGGACAAAGTTGTAGAGGTGAAGCTTCAGGGCCT +
Preference number: 6 (lower is better)
Translates to: IHRQGNSKTGGSAPS*VPQGQSCRGEASGP
Trigger: AGGCCCTGAAGCTTCACCTCTACAACTTTGTCCCTGGGGTACCAACGATGGAGCACTTCCACCAGTTTTACTGTTACCTTGTCTATGAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
CDS TCA 72 bp TTGTGTCCTTCTCGGAGCAGATGTTCTTTTCCTTCATaGTGTTCGCTATACACCTGTCCAGTTCACTCTGGG +
Preference number: 6 (lower is better)
Translates to: LCPSRSRCSFPS*CSLYTCPVHSG
Trigger: CCCAGAGTGAACTGGACAGGTGTATAGCGAACATCATGAAGGAAAAGAACATCTGCTCCGAGAAGGACACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053902.4
ENSMUST00000139041.2
ENSMUST00000177594.8
CDS TCA 72 bp CCAGTTATCTGCAGTAAGCACGTCCGCATGCAGATCTaGAAACTTGTGTCCTTCTCGGAGCAGATGTTCTTT +
Preference number: 6 (lower is better)
Translates to: PVICSKHVRMQI*KLVSFSEQMFF
Trigger: AAAGAACATCTGCTCCGAGAAGGACACAAGTTTTCAGATCTGCATGCGGACGTGCTTACTGCAGATAACTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053902.4
ENSMUST00000139041.2
ENSMUST00000177594.8
CDS TCA 72 bp TCAACTTTTTCGTTGGCATCAGAAGACTCCAAAGCTTaGGGAGCATCTTCTCGTGCTGTGCATTGGCAGAGT +
Preference number: 6 (lower is better)
Translates to: STFSLASEDSKA*GASSRAVHWQS
Trigger: ACTCTGCCAATGCACAGCACGAGAAGATGCTCCTCAAGCTTTGGAGTCTTCTGATGCCAACGAAAAAGTTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000053902.4
ENSMUST00000139041.2
ENSMUST00000177594.8
CDS GCA 72 bp GTTTATAGCCAGTTATCTGCAGTAAGCACGTCCGCATaGAGATCTGAAAACTTGTGTCCTTCTCGGAGCAGA +
Preference number: 6 (lower is better)
Translates to: VYSQLSAVSTSA*RSENLCPSRSR
Trigger: TCTGCTCCGAGAAGGACACAAGTTTTCAGATCTGCATGCGGACGTGCTTACTGCAGATAACTGGCTATAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053902.4
ENSMUST00000139041.2
ENSMUST00000177594.8
CDS CCA 72 bp AAGGTAACAGTAAAACTGGTGGAAGTGCTCCATCGTTaGTACCCCAGGGACAAAGTTGTAGAGGTGAAGCTT +
Preference number: 6 (lower is better)
Translates to: KVTVKLVEVLHR*YPRDKVVEVKL
Trigger: AAGCTTCACCTCTACAACTTTGTCCCTGGGGTACCAACGATGGAGCACTTCCACCAGTTTTACTGTTACCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8
CDS CAA 72 bp TCTGCAGTAAGCACGTCCGCATGCAGATCTGAAAACTaGTGTCCTTCTCGGAGCAGATGTTCTTTTCCTTCA +
Preference number: 6 (lower is better)
Translates to: SAVSTSACRSEN*CPSRSRCSFPS
Trigger: TGAAGGAAAAGAACATCTGCTCCGAGAAGGACACAAGTTTTCAGATCTGCATGCGGACGTGCTTACTGCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000053902.4
ENSMUST00000139041.2
ENSMUST00000177594.8
CDS CAA 72 bp CTATACACCTGTCCAGTTCACTCTGGGCAACTCGTGTaGCATTCTGTAGGACCTTATTCTTGGAATATGTCA +
Preference number: 6 (lower is better)
Translates to: LYTCPVHSGQLV*HSVGPYSWNMS
Trigger: TGACATATTCCAAGAATAAGGTCCTACAGAATGCAACACGAGTTGCCCAGAGTGAACTGGACAGGTGTATAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053902.4
ENSMUST00000139041.2
ENSMUST00000177594.8
CDS TCA 72 bp GCATTGCAATCCATCAAGAGTCCTTTGATCCGCTCGTaGAACTTCTCTCTGTACAAGTTGAAGTACATAATG +
Preference number: 6 (lower is better)
Translates to: ALQSIKSPLIRS*NFSLYKLKYIM
Trigger: CATTATGTACTTCAACTTGTACAGAGAGAAGTTTCACGAGCGGATCAAAGGACTCTTGATGGATTGCAATGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053902.4
ENSMUST00000177594.8