RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ELMO2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000017670

Ensembl transcript IDs: ENSMUST00000071699.11, ENSMUST00000074046.13, ENSMUST00000094329.11, ENSMUST00000103088.10, ENSMUST00000103091.9, ENSMUST00000126318.8, ENSMUST00000133205.8, ENSMUST00000137188.2, ENSMUST00000148643.8

Found 517 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AAGGAAAGAGGCTGTGCGCGTGGGCTTCCAGTGCTGCAGCACCAATaGAGGCCGTGGCACAGCTGTGGCCCCAGCCGCTGTGAAATCATG +
Preference number: 1 (lower is better)
Translates to: KERGCARGLPVLQHQ*RPWHSCGPSRCEIM
Trigger: CATGATTTCACAGCGGCTGGGGCCACAGCTGTGCCACGGCCTTCATTGGTGCTGCAGCACTGGAAGCCCACGCGCACAGCCTCTTTCCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR TCA 90 bp TGCTCTCAGAGTGGCTGGGAGCTCTCCACATGCTCCCAGGCACACTaGAATGAAGGCTGTCAGGCCGCTCCTCACCCTTGGGACAGGGAA +
Preference number: 1 (lower is better)
Translates to: CSQSGWELSTCSQAH*NEGCQAAPHPWDRE
Trigger: TTCCCTGTCCCAAGGGTGAGGAGCGGCCTGACAGCCTTCATTTCAGTGTGCCTGGGAGCATGTGGAGAGCTCCCAGCCACTCTGAGAGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
3UTR GCA 90 bp TGCCCTGCAGCCTTCTGCTGCTGCTCTCTTCTGTGCCTAGCTCACTaGGCTCTATCATCCCAACAGAGCCCTGCTGGCCCAAGGTCCTCT +
Preference number: 1 (lower is better)
Translates to: CPAAFCCCSLLCLAH*ALSSQQSPAGPRSS
Trigger: AGAGGACCTTGGGCCAGCAGGGCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCAGCAGAAGGCTGCAGGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
3UTR GCA 90 bp GGCTCCTGGCTCCTAGCAGAAGGCTCAAGGCCAGCGTGTAAGCTGTaGTTTGTGCACACTGCTGCTGTAGGCTGTTGCCAGCTGGCATCA +
Preference number: 1 (lower is better)
Translates to: GSWLLAEGSRPACKL*FVHTAAVGCCQLAS
Trigger: TGATGCCAGCTGGCAACAGCCTACAGCAGCAGTGTGCACAAAGCACAGCTTACACGCTGGCCTTGAGCCTTCTGCTAGGAGCCAGGAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
3UTR GCA 90 bp TCGCAGCCCAAGGTCTTGGCTTCGTTCAGCCCTCAAAGCCTGCGTTaGATGCACTTTCTATGCCTTCTGAAAGCGCCTGTCCTCACCCCC +
Preference number: 1 (lower is better)
Translates to: SQPKVLASFSPQSLR*MHFLCLLKAPVLTP
Trigger: GGGGGTGAGGACAGGCGCTTTCAGAAGGCATAGAAAGTGCATGCAACGCAGGCTTTGAGGGCTGAACGAAGCCAAGACCTTGGGCTGCGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
3UTR CCA 90 bp AATGAAGGCCGTGGCACAGCTGTGGCCCCAGCCGCTGTGAAATCATaGCTAATGGCACAAACCACAGCGCCAGGAAGGGGAGAAAGGGAA +
Preference number: 1 (lower is better)
Translates to: NEGRGTAVAPAAVKS*LMAQTTAPGRGERE
Trigger: TTCCCTTTCTCCCCTTCCTGGCGCTGTGGTTTGTGCCATTAGCCATGATTTCACAGCGGCTGGGGCCACAGCTGTGCCACGGCCTTCATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR CCA 90 bp AATACCACCATGGTAACATGCGTCCAAGGAAAGAGGCTGTGCGCGTaGGCTTCCAGTGCTGCAGCACCAATGAAGGCCGTGGCACAGCTG +
Preference number: 1 (lower is better)
Translates to: NTTMVTCVQGKRLCA*ASSAAAPMKAVAQL
Trigger: CAGCTGTGCCACGGCCTTCATTGGTGCTGCAGCACTGGAAGCCCACGCGCACAGCCTCTTTCCTTGGACGCATGTTACCATGGTGGTATT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR CCA 90 bp GGCTCTACTAGGACTGGCTGCAAACAGGAATCCTTGCACATGACTTaGCTGGGCTCCTGGCTCCTAGCAGAAGGCTCAAGGCCAGCGTGT +
Preference number: 1 (lower is better)
Translates to: GSTRTGCKQESLHMT*LGSWLLAEGSRPAC
Trigger: ACACGCTGGCCTTGAGCCTTCTGCTAGGAGCCAGGAGCCCAGCCAAGTCATGTGCAAGGATTCCTGTTTGCAGCCAGTCCTAGTAGAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
3UTR TCA 90 bp GGCACTAACTGCAGGCAACATGCGGGGTGCGGAACATGTCTTCTTTaGAAGGCACAAGTACTCGAGCTGTTCCCTGGCTGTGTCCCTGGC +
Preference number: 1 (lower is better)
Translates to: GTNCRQHAGCGTCLL*KAQVLELFPGCVPG
Trigger: GCCAGGGACACAGCCAGGGAACAGCTCGAGTACTTGTGCCTTTCAAAGAAGACATGTTCCGCACCCCGCATGTTGCCTGCAGTTAGTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
3UTR GCA 90 bp GTACTGAATACCACCATGGTAACATGCGTCCAAGGAAAGAGGCTGTaGGCGTGGGCTTCCAGTGCTGCAGCACCAATGAAGGCCGTGGCA +
Preference number: 1 (lower is better)
Translates to: VLNTTMVTCVQGKRL*AWASSAAAPMKAVA
Trigger: TGCCACGGCCTTCATTGGTGCTGCAGCACTGGAAGCCCACGCGCACAGCCTCTTTCCTTGGACGCATGTTACCATGGTGGTATTCAGTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR CCA 90 bp ACTGGCTGCAAACAGGAATCCTTGCACATGACTTGGCTGGGCTCCTaGCTCCTAGCAGAAGGCTCAAGGCCAGCGTGTAAGCTGTGCTTT +
Preference number: 1 (lower is better)
Translates to: TGCKQESLHMTWLGS*LLAEGSRPACKLCF
Trigger: AAAGCACAGCTTACACGCTGGCCTTGAGCCTTCTGCTAGGAGCCAGGAGCCCAGCCAAGTCATGTGCAAGGATTCCTGTTTGCAGCCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
3UTR TCA 90 bp CTCCTGGTGGATGGGACAGAGAGAAGCTCTGGGTCCCACTGGCTCTaGGGAGTAGTTACCACAATCACTACAGAGTTTGTACAAGTGGCG +
Preference number: 1 (lower is better)
Translates to: LLVDGTERSSGSHWL*GVVTTITTEFVQVA
Trigger: CGCCACTTGTACAAACTCTGTAGTGATTGTGGTAACTACTCCTCAGAGCCAGTGGGACCCAGAGCTTCTCTCTGTCCCATCCACCAGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR TCA 90 bp CAGCTTTGGCCCACATGGGCTCTCCAACAAACCAGAGAGGAGACTTaGAAGGAAAGGGGATGGCTGTCAGTAGGTCCAGTACCAGATGCA +
Preference number: 1 (lower is better)
Translates to: QLWPTWALQQTREET*KERGWLSVGPVPDA
Trigger: TGCATCTGGTACTGGACCTACTGACAGCCATCCCCTTTCCTTTCAAGTCTCCTCTCTGGTTTGTTGGAGAGCCCATGTGGGCCAAAGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR TCA 90 bp CTTGGGGGTGTACAGTATGCCTTTCCACGTTGTACCCAGCACGACTaGGCAGAAAACGCTCTGTCCTGTAGCACAAGCTGTGAGCATCCT +
Preference number: 1 (lower is better)
Translates to: LGGVQYAFPRCTQHD*AENALSCSTSCEHP
Trigger: AGGATGCTCACAGCTTGTGCTACAGGACAGAGCGTTTTCTGCTCAGTCGTGCTGGGTACAACGTGGAAAGGCATACTGTACACCCCCAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
3UTR TCA 90 bp TTTTCATCACTGCCTTCATTCAAACCTCCCAGCTACCAAGGCTGCTaGTGGGAGCACCAGCTTAAAGCACCAGCTGGCAAGCTGGGCACT +
Preference number: 1 (lower is better)
Translates to: FSSLPSFKPPSYQGC*WEHQLKAPAGKLGT
Trigger: AGTGCCCAGCTTGCCAGCTGGTGCTTTAAGCTGGTGCTCCCATCAGCAGCCTTGGTAGCTGGGAGGTTTGAATGAAGGCAGTGATGAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
3UTR CCA 90 bp TGCCCTGACTTCATGACTCCTGGTGGATGGGACAGAGAGAAGCTCTaGGTCCCACTGGCTCTGAGGAGTAGTTACCACAATCACTACAGA +
Preference number: 1 (lower is better)
Translates to: CPDFMTPGGWDREKL*VPLALRSSYHNHYR
Trigger: TCTGTAGTGATTGTGGTAACTACTCCTCAGAGCCAGTGGGACCCAGAGCTTCTCTCTGTCCCATCCACCAGGAGTCATGAAGTCAGGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR CCA 90 bp ATGCTTCCTGAGACCTACAATGGTGCCCATCGCAGCCCAAGGTCTTaGCTTCGTTCAGCCCTCAAAGCCTGCGTTGCATGCACTTTCTAT +
Preference number: 1 (lower is better)
Translates to: MLPETYNGAHRSPRS*LRSALKACVACTFY
Trigger: ATAGAAAGTGCATGCAACGCAGGCTTTGAGGGCTGAACGAAGCCAAGACCTTGGGCTGCGATGGGCACCATTGTAGGTCTCAGGAAGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
3UTR TCA 90 bp TCTATCATCCCAACAGAGCCCTGCTGGCCCAAGGTCCTCTCCTCTTaGCCCCAAGTGCTCAATAACAGGCCCTCAATTAACAACGAGTTG +
Preference number: 1 (lower is better)
Translates to: SIIPTEPCWPKVLSS*PQVLNNRPSINNEL
Trigger: CAACTCGTTGTTAATTGAGGGCCTGTTATTGAGCACTTGGGGTCAAGAGGAGAGGACCTTGGGCCAGCAGGGCTCTGTTGGGATGATAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
3UTR GCA 90 bp GTAGGCTGTTGCCAGCTGGCATCACGAAAGCATTCGTTGATTCAATaGTTCCTGAGACCTACAATGGTGCCCATCGCAGCCCAAGGTCTT +
Preference number: 1 (lower is better)
Translates to: VGCCQLASRKHSLIQ*FLRPTMVPIAAQGL
Trigger: AAGACCTTGGGCTGCGATGGGCACCATTGTAGGTCTCAGGAAGCATTGAATCAACGAATGCTTTCGTGATGCCAGCTGGCAACAGCCTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
3UTR GCA 90 bp CCAGCGTGTAAGCTGTGCTTTGTGCACACTGCTGCTGTAGGCTGTTaGCAGCTGGCATCACGAAAGCATTCGTTGATTCAATGCTTCCTG +
Preference number: 1 (lower is better)
Translates to: PACKLCFVHTAAVGC*QLASRKHSLIQCFL
Trigger: CAGGAAGCATTGAATCAACGAATGCTTTCGTGATGCCAGCTGGCAACAGCCTACAGCAGCAGTGTGCACAAAGCACAGCTTACACGCTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
3UTR GCA 90 bp GACCTTGTCTCAGAAAAACAAAACTTAAGGCAGAGGCTCCCAGAATaGACATGTATTGTGTATGTGTATAGCAGAAGCTCTGCCCTGCAG +
Preference number: 1 (lower is better)
Translates to: DLVSEKQNLRQRLPE*TCIVYVYSRSSALQ
Trigger: CTGCAGGGCAGAGCTTCTGCTATACACATACACAATACATGTGCATTCTGGGAGCCTCTGCCTTAAGTTTTGTTTTTCTGAGACAAGGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
3UTR-3UTR TCA 90 bp ACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCATGGTCAGCCTTTCAGGCTCTGTGGTGCTaGGGAGGGCAGCATGCCCTG +
Preference number: 2 (lower is better)
Translates to: TPRLSPSSPGLLPPWSAFQALWC*GGQHAL
Trigger: CAGGGCATGCTGCCCTCCTCAGCACCACAGAGCCTG...AAAGGCTGACCATGGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR GCA 90 bp CGCGTGGGCTTCCAGTGCTGCAGCACCAATGAAGGCCGTGGCACAGCTGTGGCCGCTCCCCAGGCCTCTTaGCCCCATGGTCAGCCTTTC +
Preference number: 2 (lower is better)
Translates to: RVGFQCCSTNEGRGTAVAAPQAS*PHGQPF
Trigger: GAAAGGCTGACCATGGGGGCAAGAGGCCTGGGGAGC...GGCCACAGCTGTGCCACGGCCTTCATTGGTGCTGCAGCACTGGAAGCCCACGCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR TCA 90 bp CCTGAAGACAGTCACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCTACCAGATGCAGATGTaGCGCAGAGCGGGAGGCAGG +
Preference number: 2 (lower is better)
Translates to: PEDSHSEALTELPRPLAPYQMQM*RRAGGR
Trigger: CCTGCCTCCCGCTCTGCGTCACATCTGCATCTGGTA...GGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGTGACTGTCTTCAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR CCA 90 bp AGGAAAGAGGCTGTGCGCGTGGGCTTCCAGTGCTGCAGCACCAATGAAGGCCGTTGCCAGTGTCTCTCCTaGGCCCCAGTCCCTTCCCGC +
Preference number: 2 (lower is better)
Translates to: RKEAVRVGFQCCSTNEGRCQCLS*APVPSR
Trigger: GCGGGAAGGGACTGGGGCCCAGGAGAGACACTGGCA...ACGGCCTTCATTGGTGCTGCAGCACTGGAAGCCCACGCGCACAGCCTCTTTCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR CCA 90 bp GGCACAAACCACAGCGCCAGGAAGGGGAGAAAGGGAAGGCAACACCCCTGTCTGTGCCAGTGTCTCTCCTaGGCCCCAGTCCCTTCCCGC +
Preference number: 2 (lower is better)
Translates to: GTNHSARKGRKGRQHPCLCQCLS*APVPSR
Trigger: GCGGGAAGGGACTGGGGCCCAGGAGAGACACTGGCA...CAGACAGGGGTGTTGCCTTCCCTTTCTCCCCTTCCTGGCGCTGTGGTTTGTGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR CCA 90 bp CCAGGGACCGCTGGAGGATGGACACATCGACCATGGGCTGGCTCACGTACCCTGAGTGGGACAGGAGCTTaGTCCCACTCTCCACGAGCC +
Preference number: 2 (lower is better)
Translates to: PGTAGGWTHRPWAGSRTLSGTGA*SHSPRA
Trigger: GGCTCGTGGAGAGTGGGACCAAGCTCCTGTCCCACT...CAGGGTACGTGAGCCAGCCCATGGTCGATGTGTCCATCCTCCAGCGGTCCCTGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126318.8
3UTR-3UTR TCA 90 bp CGCGTGGGCTTCCAGTGCTGCAGCACCAATGAAGGCCGTGGCACAGCTGTGGCCGGGTCCCACTGGCTCTaGGGAGTAGTTACCACAATC +
Preference number: 2 (lower is better)
Translates to: RVGFQCCSTNEGRGTAVAGSHWL*GVVTTI
Trigger: GATTGTGGTAACTACTCCTCAGAGCCAGTGGGACCC...GGCCACAGCTGTGCCACGGCCTTCATTGGTGCTGCAGCACTGGAAGCCCACGCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR TCA 90 bp GACAGTCACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCATGGTCCATGCCCTGACTTCATaGCTCCTGGTGGATGGGACA +
Preference number: 2 (lower is better)
Translates to: DSHSEALTELPRPLAPMVHALTS*LLVDGT
Trigger: TGTCCCATCCACCAGGAGTCATGAAGTCAGGGCATG...GACCATGGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGTGACTGTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR GCA 90 bp AGGAAAGAGGCTGTGCGCGTGGGCTTCCAGTGCTGCAGCACCAATGAAGGCCGTACAAGTGGCGTGGGCTaGCAGTGTCTCTCCTGGGCC +
Preference number: 2 (lower is better)
Translates to: RKEAVRVGFQCCSTNEGRTSGVG*QCLSWA
Trigger: GGCCCAGGAGAGACACTGGCAGCCCACGCCACTTGT...ACGGCCTTCATTGGTGCTGCAGCACTGGAAGCCCACGCGCACAGCCTCTTTCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR TCA 90 bp CCTGAAGACAGTCACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCACCAGAGAGGAGACTTaGAAGGAAAGGGGATGGCTG +
Preference number: 2 (lower is better)
Translates to: PEDSHSEALTELPRPLAPTREET*KERGWL
Trigger: CAGCCATCCCCTTTCCTTTCAAGTCTCCTCTCTGGT...GGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGTGACTGTCTTCAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR CCA 90 bp TCATTCCTAAAGCCTAAGAGAGCAGGACTCAGGCTGGAGGCCTCTGCCTGGCCATGCCAGTGTCTCTCCTaGGCCCCAGTCCCTTCCCGC +
Preference number: 2 (lower is better)
Translates to: SFLKPKRAGLRLEASAWPCQCLS*APVPSR
Trigger: GCGGGAAGGGACTGGGGCCCAGGAGAGACACTGGCA...TGGCCAGGCAGAGGCCTCCAGCCTGAGTCCTGCTCTCTTAGGCTTTAGGAATGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR CCA 90 bp AGGAAAGAGGCTGTGCGCGTGGGCTTCCAGTGCTGCAGCACCAATGAAGGCCGTAGGAAGAGAGAGGACTaGAGGGGTAGGGGGAGCCAG +
Preference number: 2 (lower is better)
Translates to: RKEAVRVGFQCCSTNEGRRKRED*RGRGSQ
Trigger: CTGGCTCCCCCTACCCCTCCAGTCCTCTCTCTTCCT...ACGGCCTTCATTGGTGCTGCAGCACTGGAAGCCCACGCGCACAGCCTCTTTCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR TCA 90 bp GACATGGTAGGGCCAAACCCCAGAGGCAGCAGCATGAGGCACAGGACGAGGCTGGGGTCCCACTGGCTCTaGGGAGTAGTTACCACAATC +
Preference number: 2 (lower is better)
Translates to: DMVGPNPRGSSMRHRTRLGSHWL*GVVTTI
Trigger: GATTGTGGTAACTACTCCTCAGAGCCAGTGGGACCC...CAGCCTCGTCCTGTGCCTCATGCTGCTGCCTCTGGGGTTTGGCCCTACCATGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR TCA 90 bp CCGAGCTCCCCAGGCCTCTTGCCCCCATGGTCAGCCTTTCATGGACCAGCTTTGCATGCCCTGACTTCATaGCTCCTGGTGGATGGGACA +
Preference number: 2 (lower is better)
Translates to: PSSPGLLPPWSAFHGPALHALTS*LLVDGT
Trigger: TGTCCCATCCACCAGGAGTCATGAAGTCAGGGCATG...CAAAGCTGGTCCATGAAAGGCTGACCATGGGGGCAAGAGGCCTGGGGAGCTCGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR TCA 90 bp CATGGACCAGCTTTGGCCCACATGGGCTCTCCAACAAACCAGAGAGGAGACTTGCAGGCTCTGTGGTGCTaGGGAGGGCAGCATGCCCTG +
Preference number: 2 (lower is better)
Translates to: HGPALAHMGSPTNQRGDLQALWC*GGQHAL
Trigger: CAGGGCATGCTGCCCTCCTCAGCACCACAGAGCCTG...CAAGTCTCCTCTCTGGTTTGTTGGAGAGCCCATGTGGGCCAAAGCTGGTCCATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR TCA 90 bp GAGGGGCCTGTAACTGAGGGGGCATGGGAATATTGTGCCTCAGCAAGGAAGAGACAGGCTCTGTGGTGCTaGGGAGGGCAGCATGCCCTG +
Preference number: 2 (lower is better)
Translates to: EGPVTEGAWEYCASARKRQALWC*GGQHAL
Trigger: CAGGGCATGCTGCCCTCCTCAGCACCACAGAGCCTG...TCTCTTCCTTGCTGAGGCACAATATTCCCATGCCCCCTCAGTTACAGGCCCCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR CCA 90 bp GACAGTCACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCATGGTCCTTCATGACTCCTGGTaGATGGGACAGAGAGAAGCT +
Preference number: 2 (lower is better)
Translates to: DSHSEALTELPRPLAPMVLHDSW*MGQREA
Trigger: AGCTTCTCTCTGTCCCATCCACCAGGAGTCATGAAG...GACCATGGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGTGACTGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR TCA 90 bp AAGGCACAAGTACTCGAGCTGTTCCCTGGCTGTGTCCCTGGCAGGGGAAAAAGGGAGGGCAGCATGCCCTaGCTTCATGACTCCTGGTGG +
Preference number: 2 (lower is better)
Translates to: KAQVLELFPGCVPGRGKREGSMP*LHDSWW
Trigger: CCACCAGGAGTCATGAAGTCAGGGCATGCTGCCCTC...CCTTTTTCCCCTGCCAGGGACACAGCCAGGGAACAGCTCGAGTACTTGTGCCTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
3UTR-3UTR TCA 90 bp AAGCAGGAGCTCAAGGCCTGTTCTTGCCTGAGCCACCTGAAGACAGTCACTCCGTACCAGATGCAGATGTaGCGCAGAGCGGGAGGCAGG +
Preference number: 2 (lower is better)
Translates to: KQELKACSCLSHLKTVTPYQMQM*RRAGGR
Trigger: CCTGCCTCCCGCTCTGCGTCACATCTGCATCTGGTA...CGGAGTGACTGTCTTCAGGTGGCTCAGGCAAGAACAGGCCTTGAGCTCCTGCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR TCA 90 bp CCAGGGACCGCTGGAGGATGGACACATCGACCATGGGCTGGCTCACGTACCCTGGAAAGTCACGTCAGCTaGGAGCTTAGCCAACTCCTT +
Preference number: 2 (lower is better)
Translates to: PGTAGGWTHRPWAGSRTLESHVS*ELSQLL
Trigger: AAGGAGTTGGCTAAGCTCTCAGCTGACGTGACTTTC...CAGGGTACGTGAGCCAGCCCATGGTCGATGTGTCCATCCTCCAGCGGTCCCTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126318.8
3UTR-3UTR GCA 90 bp GGCACAAACCACAGCGCCAGGAAGGGGAGAAAGGGAAGGCAACACCCCTGTCTGAGGTCCAGTACCAGATaGAGATGTGACGCAGAGCGG +
Preference number: 2 (lower is better)
Translates to: GTNHSARKGRKGRQHPCLRSSTR*RCDAER
Trigger: CCGCTCTGCGTCACATCTGCATCTGGTACTGGACCT...CAGACAGGGGTGTTGCCTTCCCTTTCTCCCCTTCCTGGCGCTGTGGTTTGTGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR GCA 90 bp GAGGGGCCTGTAACTGAGGGGGCATGGGAATATTGTGCCTCAGCAAGGAAGAGAGCTCCCCAGGCCTCTTaGCCCCATGGTCAGCCTTTC +
Preference number: 2 (lower is better)
Translates to: EGPVTEGAWEYCASARKRAPQAS*PHGQPF
Trigger: GAAAGGCTGACCATGGGGGCAAGAGGCCTGGGGAGC...TCTCTTCCTTGCTGAGGCACAATATTCCCATGCCCCCTCAGTTACAGGCCCCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR CCA 90 bp CCGAGCTCCCCAGGCCTCTTGCCCCCATGGTCAGCCTTTCATGGACCAGCTTTGATGACTCCTGGTGGATaGGACAGAGAGAAGCTCTGG +
Preference number: 2 (lower is better)
Translates to: PSSPGLLPPWSAFHGPALMTPGG*DREKLW
Trigger: CCAGAGCTTCTCTCTGTCCCATCCACCAGGAGTCAT...CAAAGCTGGTCCATGAAAGGCTGACCATGGGGGCAAGAGGCCTGGGGAGCTCGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR CCA 90 bp ACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCATGGTCAGCCTTTCTTCATGACTCCTGGTaGATGGGACAGAGAGAAGCT +
Preference number: 2 (lower is better)
Translates to: TPRLSPSSPGLLPPWSAFLHDSW*MGQREA
Trigger: AGCTTCTCTCTGTCCCATCCACCAGGAGTCATGAAG...AAAGGCTGACCATGGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR CCA 90 bp CGCGTGGGCTTCCAGTGCTGCAGCACCAATGAAGGCCGTGGCACAGCTGTGGCCATGAGGCTGAGGGCTTaGGGCAAAATTACTACCTGT +
Preference number: 2 (lower is better)
Translates to: RVGFQCCSTNEGRGTAVAMRLRA*GKITTC
Trigger: ACAGGTAGTAATTTTGCCCCAAGCCCTCAGCCTCAT...GGCCACAGCTGTGCCACGGCCTTCATTGGTGCTGCAGCACTGGAAGCCCACGCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR TCA 90 bp GAGGGGCCTGTAACTGAGGGGGCATGGGAATATTGTGCCTCAGCAAGGAAGAGAGAGGGCAGCATGCCCTaGCTTCATGACTCCTGGTGG +
Preference number: 2 (lower is better)
Translates to: EGPVTEGAWEYCASARKREGSMP*LHDSWW
Trigger: CCACCAGGAGTCATGAAGTCAGGGCATGCTGCCCTC...TCTCTTCCTTGCTGAGGCACAATATTCCCATGCCCCCTCAGTTACAGGCCCCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR TCA 90 bp TTTGAAAGGCACAAGTACTCGAGCTGTTCCCTGGCTGTGTCCCTGGCAGGGGAACCAGGCACACTGAAATaGAGGCTGTCAGGCCGCTCC +
Preference number: 2 (lower is better)
Translates to: FERHKYSSCSLAVSLAGEPGTLK*RLSGRS
Trigger: GGAGCGGCCTGACAGCCTTCATTTCAGTGTGCCTGG...TTCCCCTGCCAGGGACACAGCCAGGGAACAGCTCGAGTACTTGTGCCTTTCAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
3UTR-3UTR GCA 90 bp ACTAGACATGGTAGGGCCAAACCCCAGAGGCAGCAGCATGAGGCACAGGACGAGAGGTCCAGTACCAGATaGAGATGTGACGCAGAGCGG +
Preference number: 2 (lower is better)
Translates to: TRHGRAKPQRQQHEAQDERSSTR*RCDAER
Trigger: CCGCTCTGCGTCACATCTGCATCTGGTACTGGACCT...CTCGTCCTGTGCCTCATGCTGCTGCCTCTGGGGTTTGGCCCTACCATGTCTAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR CCA 90 bp AGGAAAGAGGCTGTGCGCGTGGGCTTCCAGTGCTGCAGCACCAATGAAGGCCGTATGACTCCTGGTGGATaGGACAGAGAGAAGCTCTGG +
Preference number: 2 (lower is better)
Translates to: RKEAVRVGFQCCSTNEGRMTPGG*DREKLW
Trigger: CCAGAGCTTCTCTCTGTCCCATCCACCAGGAGTCAT...ACGGCCTTCATTGGTGCTGCAGCACTGGAAGCCCACGCGCACAGCCTCTTTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR CAA 90 bp TCCCCAGGCCTCTTGCCCCCATGGTCAGCCTTTCATGGACCAGCTTaGGCCCACATGGGCTCTCCAACAAACCAGAGAGGAGACTTGAAA +
Preference number: 2 (lower is better)
Translates to: SPGLLPPWSAFHGPA*AHMGSPTNQRGDLK
Trigger: TTTCAAGTCTCCTCTCTGGTTTGTTGGAGAGCCCATGTGGGCCAAAGCTGGTCCATGAAAGGCTGACCATGGGGGCAAGAGGCCTGGGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR CAA 90 bp ATCGCAGCCCAAGGTCTTGGCTTCGTTCAGCCCTCAAAGCCTGCGTaGCATGCACTTTCTATGCCTTCTGAAAGCGCCTGTCCTCACCCC +
Preference number: 2 (lower is better)
Translates to: IAAQGLGFVQPSKPA*HALSMPSESACPHP
Trigger: GGGGTGAGGACAGGCGCTTTCAGAAGGCATAGAAAGTGCATGCAACGCAGGCTTTGAGGGCTGAACGAAGCCAAGACCTTGGGCTGCGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
3UTR CAA 90 bp TCTGCTCATCCGGGCTCTACTAGGACTGGCTGCAAACAGGAATCCTaGCACATGACTTGGCTGGGCTCCTGGCTCCTAGCAGAAGGCTCA +
Preference number: 2 (lower is better)
Translates to: SAHPGSTRTGCKQES*HMTWLGSWLLAEGS
Trigger: TGAGCCTTCTGCTAGGAGCCAGGAGCCCAGCCAAGTCATGTGCAAGGATTCCTGTTTGCAGCCAGTCCTAGTAGAGCCCGGATGAGCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
3UTR-3UTR TCA 90 bp AAGCAGGAGCTCAAGGCCTGTTCTTGCCTGAGCCACCTGAAGACAGTCACTCCGCATGCCCTGACTTCATaGCTCCTGGTGGATGGGACA +
Preference number: 2 (lower is better)
Translates to: KQELKACSCLSHLKTVTPHALTS*LLVDGT
Trigger: TGTCCCATCCACCAGGAGTCATGAAGTCAGGGCATG...CGGAGTGACTGTCTTCAGGTGGCTCAGGCAAGAACAGGCCTTGAGCTCCTGCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR TCA 90 bp ACTAGACATGGTAGGGCCAAACCCCAGAGGCAGCAGCATGAGGCACAGGACGAGACCAGAGAGGAGACTTaGAAGGAAAGGGGATGGCTG +
Preference number: 2 (lower is better)
Translates to: TRHGRAKPQRQQHEAQDETREET*KERGWL
Trigger: CAGCCATCCCCTTTCCTTTCAAGTCTCCTCTCTGGT...CTCGTCCTGTGCCTCATGCTGCTGCCTCTGGGGTTTGGCCCTACCATGTCTAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR TCA 90 bp TCATTCCTAAAGCCTAAGAGAGCAGGACTCAGGCTGGAGGCCTCTGCCTGGCCAAGGACGAGGCTGGGATaGGCCCTCAGAGACCTATTA +
Preference number: 2 (lower is better)
Translates to: SFLKPKRAGLRLEASAWPRTRLG*ALRDLL
Trigger: TAATAGGTCTCTGAGGGCTCATCCCAGCCTCGTCCT...TGGCCAGGCAGAGGCCTCCAGCCTGAGTCCTGCTCTCTTAGGCTTTAGGAATGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR GCA 90 bp TGCCCATCGCAGCCCAAGGTCTTGGCTTCGTTCAGCCCTCAAAGCCTGCGTTGCGGGACAGGGAATAAGTaGAGAGGAAGAGGTGTGGAT +
Preference number: 2 (lower is better)
Translates to: CPSQPKVLASFSPQSLRCGTGNK*RGRGVD
Trigger: ATCCACACCTCTTCCTCTGCACTTATTCCCTGTCCC...GCAACGCAGGCTTTGAGGGCTGAACGAAGCCAAGACCTTGGGCTGCGATGGGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
3UTR-3UTR GCA 90 bp TGCCCATCGCAGCCCAAGGTCTTGGCTTCGTTCAGCCCTCAAAGCCTGCGTTGCTGGGGGTGTACAGTATaGCTTTCCACGTTGTACCCA +
Preference number: 2 (lower is better)
Translates to: CPSQPKVLASFSPQSLRCWGCTV*LSTLYP
Trigger: TGGGTACAACGTGGAAAGGCATACTGTACACCCCCA...GCAACGCAGGCTTTGAGGGCTGAACGAAGCCAAGACCTTGGGCTGCGATGGGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
3UTR-3UTR CCA 90 bp AGGAAAGAGGCTGTGCGCGTGGGCTTCCAGTGCTGCAGCACCAATGAAGGCCGTCTTCATGACTCCTGGTaGATGGGACAGAGAGAAGCT +
Preference number: 2 (lower is better)
Translates to: RKEAVRVGFQCCSTNEGRLHDSW*MGQREA
Trigger: AGCTTCTCTCTGTCCCATCCACCAGGAGTCATGAAG...ACGGCCTTCATTGGTGCTGCAGCACTGGAAGCCCACGCGCACAGCCTCTTTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR TCA 90 bp TCATTCCTAAAGCCTAAGAGAGCAGGACTCAGGCTGGAGGCCTCTGCCTGGCCAACCAGAGAGGAGACTTaGAAGGAAAGGGGATGGCTG +
Preference number: 2 (lower is better)
Translates to: SFLKPKRAGLRLEASAWPTREET*KERGWL
Trigger: CAGCCATCCCCTTTCCTTTCAAGTCTCCTCTCTGGT...TGGCCAGGCAGAGGCCTCCAGCCTGAGTCCTGCTCTCTTAGGCTTTAGGAATGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR GCA 90 bp CATGGACCAGCTTTGGCCCACATGGGCTCTCCAACAAACCAGAGAGGAGACTTGAGGTCCAGTACCAGATaGAGATGTGACGCAGAGCGG +
Preference number: 2 (lower is better)
Translates to: HGPALAHMGSPTNQRGDLRSSTR*RCDAER
Trigger: CCGCTCTGCGTCACATCTGCATCTGGTACTGGACCT...CAAGTCTCCTCTCTGGTTTGTTGGAGAGCCCATGTGGGCCAAAGCTGGTCCATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR CCA 90 bp TCATTCCTAAAGCCTAAGAGAGCAGGACTCAGGCTGGAGGCCTCTGCCTGGCCAATGACTCCTGGTGGATaGGACAGAGAGAAGCTCTGG +
Preference number: 2 (lower is better)
Translates to: SFLKPKRAGLRLEASAWPMTPGG*DREKLW
Trigger: CCAGAGCTTCTCTCTGTCCCATCCACCAGGAGTCAT...TGGCCAGGCAGAGGCCTCCAGCCTGAGTCCTGCTCTCTTAGGCTTTAGGAATGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR CAA 90 bp CCAGCTTTGGCCCACATGGGCTCTCCAACAAACCAGAGAGGAGACTaGAAAGGAAAGGGGATGGCTGTCAGTAGGTCCAGTACCAGATGC +
Preference number: 2 (lower is better)
Translates to: PALAHMGSPTNQRGD*KGKGMAVSRSSTRC
Trigger: GCATCTGGTACTGGACCTACTGACAGCCATCCCCTTTCCTTTCAAGTCTCCTCTCTGGTTTGTTGGAGAGCCCATGTGGGCCAAAGCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR CCA 90 bp AGACCTATTAAGCAGGAGCTCAAGGCCTGTTCTTGCCTGAGCCACCTGAAGACAGACAGAGAGAAGCTCTaGGTCCCACTGGCTCTGAGG +
Preference number: 2 (lower is better)
Translates to: RPIKQELKACSCLSHLKTDREKL*VPLALR
Trigger: CCTCAGAGCCAGTGGGACCCAGAGCTTCTCTCTGTC...TGTCTTCAGGTGGCTCAGGCAAGAACAGGCCTTGAGCTCCTGCTTAATAGGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR CCA 90 bp GGGCCTGTAACTGAGGGGGCATGGGAATATTGTGCCTCAGCAAGGAAGAGAGAGATGACTCCTGGTGGATaGGACAGAGAGAAGCTCTGG +
Preference number: 2 (lower is better)
Translates to: GPVTEGAWEYCASARKREMTPGG*DREKLW
Trigger: CCAGAGCTTCTCTCTGTCCCATCCACCAGGAGTCAT...CTCTCTCTTCCTTGCTGAGGCACAATATTCCCATGCCCCCTCAGTTACAGGCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR CCA 90 bp AAGCAGGAGCTCAAGGCCTGTTCTTGCCTGAGCCACCTGAAGACAGTCACTCCGCTTCATGACTCCTGGTaGATGGGACAGAGAGAAGCT +
Preference number: 2 (lower is better)
Translates to: KQELKACSCLSHLKTVTPLHDSW*MGQREA
Trigger: AGCTTCTCTCTGTCCCATCCACCAGGAGTCATGAAG...CGGAGTGACTGTCTTCAGGTGGCTCAGGCAAGAACAGGCCTTGAGCTCCTGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR CAA 90 bp ACTGCTGCTGTAGGCTGTTGCCAGCTGGCATCACGAAAGCATTCGTaGATTCAATGCTTCCTGAGACCTACAATGGTGCCCATCGCAGCC +
Preference number: 2 (lower is better)
Translates to: TAAVGCCQLASRKHS*IQCFLRPTMVPIAA
Trigger: GGCTGCGATGGGCACCATTGTAGGTCTCAGGAAGCATTGAATCAACGAATGCTTTCGTGATGCCAGCTGGCAACAGCCTACAGCAGCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
3UTR-3UTR TCA 90 bp AGACCTATTAAGCAGGAGCTCAAGGCCTGTTCTTGCCTGAGCCACCTGAAGACACATGCCCTGACTTCATaGCTCCTGGTGGATGGGACA +
Preference number: 2 (lower is better)
Translates to: RPIKQELKACSCLSHLKTHALTS*LLVDGT
Trigger: TGTCCCATCCACCAGGAGTCATGAAGTCAGGGCATG...TGTCTTCAGGTGGCTCAGGCAAGAACAGGCCTTGAGCTCCTGCTTAATAGGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR GCA 90 bp TGCTGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCCCTCTTGACCCCAAGTaGTCAATAACAGGCCCTCAA +
Preference number: 2 (lower is better)
Translates to: CCCSLLCLAHCALSSQQSPLDPK*SITGPQ
Trigger: TTGAGGGCCTGTTATTGAGCACTTGGGGTCAAGAGG...GCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
3UTR-3UTR TCA 90 bp CAGCTGGCATCACGAAAGCATTCGTTGATTCAATGCTTCCTGAGACCTACAATGTACCAGATGCAGATGTaGCGCAGAGCGGGAGGCAGG +
Preference number: 2 (lower is better)
Translates to: QLASRKHSLIQCFLRPTMYQMQM*RRAGGR
Trigger: CCTGCCTCCCGCTCTGCGTCACATCTGCATCTGGTA...CATTGTAGGTCTCAGGAAGCATTGAATCAACGAATGCTTTCGTGATGCCAGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
3UTR-3UTR TCA 90 bp CTGCAAGGACAAGAGAGACGGGTGTCTCTAGAGACTAGACATGGTAGGGCCAAAACCAGAGAGGAGACTTaGAAGGAAAGGGGATGGCTG +
Preference number: 2 (lower is better)
Translates to: LQGQERRVSLETRHGRAKTREET*KERGWL
Trigger: CAGCCATCCCCTTTCCTTTCAAGTCTCCTCTCTGGT...TTTGGCCCTACCATGTCTAGTCTCTAGAGACACCCGTCTCTCTTGTCCTTGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR TCA 90 bp TGCTGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCCAATTAACAACGAGTTaGCTGAGTTGGGCACTAGCA +
Preference number: 2 (lower is better)
Translates to: CCCSLLCLAHCALSSQQSQLTTS*LSWALA
Trigger: TGCTAGTGCCCAACTCAGTCAACTCGTTGTTAATTG...GCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
3UTR-3UTR CCA 90 bp CATGCACTTTCTATGCCTTCTGAAAGCGCCTGTCCTCACCCCCTTCTGACTGAGGCCGCTGTGAAATCATaGCTAATGGCACAAACCACA +
Preference number: 2 (lower is better)
Translates to: HALSMPSESACPHPLLTEAAVKS*LMAQTT
Trigger: TGTGGTTTGTGCCATTAGCCATGATTTCACAGCGGC...CTCAGTCAGAAGGGGGTGAGGACAGGCGCTTTCAGAAGGCATAGAAAGTGCATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
3UTR-3UTR GCA 90 bp TTAGACCTTGTCTCAGAAAAACAAAACTTAAGGCAGAGGCTCCCAGAATGCACAATCCCAACAGAGCCCTaGTGGCCCAAGGTCCTCTCC +
Preference number: 2 (lower is better)
Translates to: LDLVSEKQNLRQRLPECTIPTEP*WPKVLS
Trigger: GGAGAGGACCTTGGGCCAGCAGGGCTCTGTTGGGAT...TGTGCATTCTGGGAGCCTCTGCCTTAAGTTTTGTTTTTCTGAGACAAGGTCTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
3UTR-3UTR CCA 90 bp TTAGACCTTGTCTCAGAAAAACAAAACTTAAGGCAGAGGCTCCCAGAATGCACACCAACAGAGCCCTGCTaGCCCAAGGTCCTCTCCTCT +
Preference number: 2 (lower is better)
Translates to: LDLVSEKQNLRQRLPECTPTEPC*PKVLSS
Trigger: AGAGGAGAGGACCTTGGGCCAGCAGGGCTCTGTTGG...TGTGCATTCTGGGAGCCTCTGCCTTAAGTTTTGTTTTTCTGAGACAAGGTCTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
3UTR-3UTR GCA 90 bp TTAGACCTTGTCTCAGAAAAACAAAACTTAAGGCAGAGGCTCCCAGAATGCACAGCAGCCTTCTGCTGCTaGTCTCTTCTGTGCCTAGCT +
Preference number: 2 (lower is better)
Translates to: LDLVSEKQNLRQRLPECTAAFCC*SLLCLA
Trigger: AGCTAGGCACAGAAGAGAGCAGCAGCAGAAGGCTGC...TGTGCATTCTGGGAGCCTCTGCCTTAAGTTTTGTTTTTCTGAGACAAGGTCTAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
3UTR-3UTR TCA 90 bp ACTCAGAGTTGCAATTTAGTTAAAGAAGAAAACTCAGCTGGGCTTGGTGGCGCAAAGGTCCTCTCCTCTTaGCCCCAAGTGCTCAATAAC +
Preference number: 2 (lower is better)
Translates to: TQSCNLVKEENSAGLGGAKVLSS*PQVLNN
Trigger: GTTATTGAGCACTTGGGGTCAAGAGGAGAGGACCTT...TGCGCCACCAAGCCCAGCTGAGTTTTCTTCTTTAACTAAATTGCAACTCTGAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000103088.10
3UTR-3UTR GCA 90 bp ACTCAGAGTTGCAATTTAGTTAAAGAAGAAAACTCAGCTGGGCTTGGTGGCGCACAGAGGCTCCCAGAATaGACATGTATTGTGTATGTG +
Preference number: 2 (lower is better)
Translates to: TQSCNLVKEENSAGLGGAQRLPE*TCIVYV
Trigger: CACATACACAATACATGTGCATTCTGGGAGCCTCTG...TGCGCCACCAAGCCCAGCTGAGTTTTCTTCTTTAACTAAATTGCAACTCTGAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103088.10
3UTR-3UTR TCA 90 bp TTAGACCTTGTCTCAGAAAAACAAAACTTAAGGCAGAGGCTCCCAGAATGCACACAATTAACAACGAGTTaGCTGAGTTGGGCACTAGCA +
Preference number: 2 (lower is better)
Translates to: LDLVSEKQNLRQRLPECTQLTTS*LSWALA
Trigger: TGCTAGTGCCCAACTCAGTCAACTCGTTGTTAATTG...TGTGCATTCTGGGAGCCTCTGCCTTAAGTTTTGTTTTTCTGAGACAAGGTCTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
3UTR TCA 72 bp GGCTGTGCGCGTGGGCTTCCAGTGCTGCAGCACCAATaGAGGCCGTGGCACAGCTGTGGCCCCAGCCGCTGT +
Preference number: 3 (lower is better)
Translates to: GCARGLPVLQHQ*RPWHSCGPSRC
Trigger: ACAGCGGCTGGGGCCACAGCTGTGCCACGGCCTTCATTGGTGCTGCAGCACTGGAAGCCCACGCGCACAGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR GCA 72 bp CCAAGGAAAGAGGCTGTGCGCGTGGGCTTCCAGTGCTaGAGCACCAATGAAGGCCGTGGCACAGCTGTGGCC +
Preference number: 3 (lower is better)
Translates to: PRKEAVRVGFQC*STNEGRGTAVA
Trigger: GGCCACAGCTGTGCCACGGCCTTCATTGGTGCTGCAGCACTGGAAGCCCACGCGCACAGCCTCTTTCCTTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR CAA 90 bp AGGAAAGAGGCTGTGCGCGTGGGCTTCCAGTGCTGCAGCACCAATGAAGGCCGTAGCTCCCCAGGCCTCTaGCCCCCATGGTCAGCCTTT +
Preference number: 3 (lower is better)
Translates to: RKEAVRVGFQCCSTNEGRSSPGL*PPWSAF
Trigger: AAAGGCTGACCATGGGGGCAAGAGGCCTGGGGAGCT...ACGGCCTTCATTGGTGCTGCAGCACTGGAAGCCCACGCGCACAGCCTCTTTCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR GCA 72 bp TCACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTaGCCCCATGGTCAGCCTTTCATGGACCAGCTTTGG +
Preference number: 3 (lower is better)
Translates to: SLRGSHRAPQAS*PHGQPFMDQLW
Trigger: CCAAAGCTGGTCCATGAAAGGCTGACCATGGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR TCA 72 bp AGTGGCTGGGAGCTCTCCACATGCTCCCAGGCACACTaGAATGAAGGCTGTCAGGCCGCTCCTCACCCTTGG +
Preference number: 3 (lower is better)
Translates to: SGWELSTCSQAH*NEGCQAAPHPW
Trigger: CCAAGGGTGAGGAGCGGCCTGACAGCCTTCATTTCAGTGTGCCTGGGAGCATGTGGAGAGCTCCCAGCCACT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
3UTR CCA 72 bp CGTGGCACAGCTGTGGCCCCAGCCGCTGTGAAATCATaGCTAATGGCACAAACCACAGCGCCAGGAAGGGGA +
Preference number: 3 (lower is better)
Translates to: RGTAVAPAAVKS*LMAQTTAPGRG
Trigger: TCCCCTTCCTGGCGCTGTGGTTTGTGCCATTAGCCATGATTTCACAGCGGCTGGGGCCACAGCTGTGCCACG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR GCA 72 bp GCCTTCTGCTGCTGCTCTCTTCTGTGCCTAGCTCACTaGGCTCTATCATCCCAACAGAGCCCTGCTGGCCCA +
Preference number: 3 (lower is better)
Translates to: AFCCCSLLCLAH*ALSSQQSPAGP
Trigger: TGGGCCAGCAGGGCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCAGCAGAAGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
3UTR-3UTR CAA 90 bp GGCACAAACCACAGCGCCAGGAAGGGGAGAAAGGGAAGGCAACACCCCTGTCTGGGGGGCATGGGAATATaGTGCCTCAGCAAGGAAGAG +
Preference number: 3 (lower is better)
Translates to: GTNHSARKGRKGRQHPCLGGMGI*CLSKEE
Trigger: CTCTTCCTTGCTGAGGCACAATATTCCCATGCCCCC...CAGACAGGGGTGTTGCCTTCCCTTTCTCCCCTTCCTGGCGCTGTGGTTTGTGCC
59% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR CCA 72 bp ATGGTAACATGCGTCCAAGGAAAGAGGCTGTGCGCGTaGGCTTCCAGTGCTGCAGCACCAATGAAGGCCGTG +
Preference number: 3 (lower is better)
Translates to: MVTCVQGKRLCA*ASSAAAPMKAV
Trigger: CACGGCCTTCATTGGTGCTGCAGCACTGGAAGCCCACGCGCACAGCCTCTTTCCTTGGACGCATGTTACCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR CCA 72 bp GAGACCTACAATGGTGCCCATCGCAGCCCAAGGTCTTaGCTTCGTTCAGCCCTCAAAGCCTGCGTTGCATGC +
Preference number: 3 (lower is better)
Translates to: ETYNGAHRSPRS*LRSALKACVAC
Trigger: GCATGCAACGCAGGCTTTGAGGGCTGAACGAAGCCAAGACCTTGGGCTGCGATGGGCACCATTGTAGGTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
3UTR-3UTR CAA 90 bp GAGGGGCCTGTAACTGAGGGGGCATGGGAATATTGTGCCTCAGCAAGGAAGAGAGCTCAAGGCCTGTTCTaGCCTGAGCCACCTGAAGAC +
Preference number: 3 (lower is better)
Translates to: EGPVTEGAWEYCASARKRAQGLF*PEPPED
Trigger: GTCTTCAGGTGGCTCAGGCAAGAACAGGCCTTGAGC...TCTCTTCCTTGCTGAGGCACAATATTCCCATGCCCCCTCAGTTACAGGCCCCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR GCA 72 bp CTCCTAGCAGAAGGCTCAAGGCCAGCGTGTAAGCTGTaGTTTGTGCACACTGCTGCTGTAGGCTGTTGCCAG +
Preference number: 3 (lower is better)
Translates to: LLAEGSRPACKL*FVHTAAVGCCQ
Trigger: CTGGCAACAGCCTACAGCAGCAGTGTGCACAAAGCACAGCTTACACGCTGGCCTTGAGCCTTCTGCTAGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
3UTR CCA 72 bp TCTTGCCCCCATGGTCAGCCTTTCATGGACCAGCTTTaGCCCACATGGGCTCTCCAACAAACCAGAGAGGAG +
Preference number: 3 (lower is better)
Translates to: SCPHGQPFMDQL*PTWALQQTREE
Trigger: CTCCTCTCTGGTTTGTTGGAGAGCCCATGTGGGCCAAAGCTGGTCCATGAAAGGCTGACCATGGGGGCAAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR CCA 72 bp GGGAAGCAAACGGAGGGGCCTGTAACTGAGGGGGCATaGGAATATTGTGCCTCAGCAAGGAAGAGAGAGGAC +
Preference number: 3 (lower is better)
Translates to: GKQTEGPVTEGA*EYCASARKRED
Trigger: GTCCTCTCTCTTCCTTGCTGAGGCACAATATTCCCATGCCCCCTCAGTTACAGGCCCCTCCGTTTGCTTCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR CAA 90 bp GGGCCTGTAACTGAGGGGGCATGGGAATATTGTGCCTCAGCAAGGAAGAGAGAGTTTCATGGACCAGCTTaGGCCCACATGGGCTCTCCA +
Preference number: 3 (lower is better)
Translates to: GPVTEGAWEYCASARKREFHGPA*AHMGSP
Trigger: TGGAGAGCCCATGTGGGCCAAAGCTGGTCCATGAAA...CTCTCTCTTCCTTGCTGAGGCACAATATTCCCATGCCCCCTCAGTTACAGGCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR TCA 72 bp CCAACAGAGCCCTGCTGGCCCAAGGTCCTCTCCTCTTaGCCCCAAGTGCTCAATAACAGGCCCTCAATTAAC +
Preference number: 3 (lower is better)
Translates to: PTEPCWPKVLSS*PQVLNNRPSIN
Trigger: GTTAATTGAGGGCCTGTTATTGAGCACTTGGGGTCAAGAGGAGAGGACCTTGGGCCAGCAGGGCTCTGTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
3UTR TCA 72 bp CTGCCTTCATTCAAACCTCCCAGCTACCAAGGCTGCTaGTGGGAGCACCAGCTTAAAGCACCAGCTGGCAAG +
Preference number: 3 (lower is better)
Translates to: LPSFKPPSYQGC*WEHQLKAPAGK
Trigger: CTTGCCAGCTGGTGCTTTAAGCTGGTGCTCCCATCAGCAGCCTTGGTAGCTGGGAGGTTTGAATGAAGGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
3UTR GCA 72 bp CAGCTTAAAGCACCAGCTGGCAAGCTGGGCACTAACTaGAGGCAACATGCGGGGTGCGGAACATGTCTTCTT +
Preference number: 3 (lower is better)
Translates to: QLKAPAGKLGTN*RQHAGCGTCLL
Trigger: AAGAAGACATGTTCCGCACCCCGCATGTTGCCTGCAGTTAGTGCCCAGCTTGCCAGCTGGTGCTTTAAGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
3UTR-3UTR CAA 90 bp TGCCCATCGCAGCCCAAGGTCTTGGCTTCGTTCAGCCCTCAAAGCCTGCGTTGCCGGAACATGTCTTCTTaGAAAGGCACAAGTACTCGA +
Preference number: 3 (lower is better)
Translates to: CPSQPKVLASFSPQSLRCRNMSS*KGTSTR
Trigger: TCGAGTACTTGTGCCTTTCAAAGAAGACATGTTCCG...GCAACGCAGGCTTTGAGGGCTGAACGAAGCCAAGACCTTGGGCTGCGATGGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
3UTR-3UTR CAA 90 bp CTGCAAGGACAAGAGAGACGGGTGTCTCTAGAGACTAGACATGGTAGGGCCAAATTTCATGGACCAGCTTaGGCCCACATGGGCTCTCCA +
Preference number: 3 (lower is better)
Translates to: LQGQERRVSLETRHGRAKFHGPA*AHMGSP
Trigger: TGGAGAGCCCATGTGGGCCAAAGCTGGTCCATGAAA...TTTGGCCCTACCATGTCTAGTCTCTAGAGACACCCGTCTCTCTTGTCCTTGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR-3UTR CAA 90 bp AGACCTATTAAGCAGGAGCTCAAGGCCTGTTCTTGCCTGAGCCACCTGAAGACATTTCATGGACCAGCTTaGGCCCACATGGGCTCTCCA +
Preference number: 3 (lower is better)
Translates to: RPIKQELKACSCLSHLKTFHGPA*AHMGSP
Trigger: TGGAGAGCCCATGTGGGCCAAAGCTGGTCCATGAAA...TGTCTTCAGGTGGCTCAGGCAAGAACAGGCCTTGAGCTCCTGCTTAATAGGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR TCA 72 bp CCCACATGGGCTCTCCAACAAACCAGAGAGGAGACTTaGAAGGAAAGGGGATGGCTGTCAGTAGGTCCAGTA +
Preference number: 3 (lower is better)
Translates to: PTWALQQTREET*KERGWLSVGPV
Trigger: TACTGGACCTACTGACAGCCATCCCCTTTCCTTTCAAGTCTCCTCTCTGGTTTGTTGGAGAGCCCATGTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR TCA 72 bp GAGGCTGAGGGCTTGGGGCAAAATTACTACCTGTCCTaGTACCTGCAAGGACAAGAGAGACGGGTGTCTCTA +
Preference number: 3 (lower is better)
Translates to: EAEGLGQNYYLS*YLQGQERRVSL
Trigger: TAGAGACACCCGTCTCTCTTGTCCTTGCAGGTATCAGGACAGGTAGTAATTTTGCCCCAAGCCCTCAGCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR GCA 72 bp AAGGTCTTGGCTTCGTTCAGCCCTCAAAGCCTGCGTTaGATGCACTTTCTATGCCTTCTGAAAGCGCCTGTC +
Preference number: 3 (lower is better)
Translates to: KVLASFSPQSLR*MHFLCLLKAPV
Trigger: GACAGGCGCTTTCAGAAGGCATAGAAAGTGCATGCAACGCAGGCTTTGAGGGCTGAACGAAGCCAAGACCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
3UTR GCA 72 bp TGCCAGCTGGCATCACGAAAGCATTCGTTGATTCAATaGTTCCTGAGACCTACAATGGTGCCCATCGCAGCC +
Preference number: 3 (lower is better)
Translates to: CQLASRKHSLIQ*FLRPTMVPIAA
Trigger: GGCTGCGATGGGCACCATTGTAGGTCTCAGGAAGCATTGAATCAACGAATGCTTTCGTGATGCCAGCTGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
3UTR TCA 72 bp GTACAGTATGCCTTTCCACGTTGTACCCAGCACGACTaGGCAGAAAACGCTCTGTCCTGTAGCACAAGCTGT +
Preference number: 3 (lower is better)
Translates to: VQYAFPRCTQHD*AENALSCSTSC
Trigger: ACAGCTTGTGCTACAGGACAGAGCGTTTTCTGCTCAGTCGTGCTGGGTACAACGTGGAAAGGCATACTGTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
3UTR TCA 72 bp GATGGGACAGAGAGAAGCTCTGGGTCCCACTGGCTCTaGGGAGTAGTTACCACAATCACTACAGAGTTTGTA +
Preference number: 3 (lower is better)
Translates to: DGTERSSGSHWL*GVVTTITTEFV
Trigger: TACAAACTCTGTAGTGATTGTGGTAACTACTCCTCAGAGCCAGTGGGACCCAGAGCTTCTCTCTGTCCCATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR GCA 72 bp AAGCTGTGCTTTGTGCACACTGCTGCTGTAGGCTGTTaGCAGCTGGCATCACGAAAGCATTCGTTGATTCAA +
Preference number: 3 (lower is better)
Translates to: KLCFVHTAAVGC*QLASRKHSLIQ
Trigger: TTGAATCAACGAATGCTTTCGTGATGCCAGCTGGCAACAGCCTACAGCAGCAGTGTGCACAAAGCACAGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
3UTR-3UTR CAA 90 bp ACTCAGAGTTGCAATTTAGTTAAAGAAGAAAACTCAGCTGGGCTTGGTGGCGCAAACGAGTTGACTGAGTaGGGCACTAGCACCTTCCTG +
Preference number: 3 (lower is better)
Translates to: TQSCNLVKEENSAGLGGANELTE*GTSTFL
Trigger: CAGGAAGGTGCTAGTGCCCAACTCAGTCAACTCGTT...TGCGCCACCAAGCCCAGCTGAGTTTTCTTCTTTAACTAAATTGCAACTCTGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103088.10
3UTR-3UTR CAA 90 bp TTAGACCTTGTCTCAGAAAAACAAAACTTAAGGCAGAGGCTCCCAGAATGCACAAACGAGTTGACTGAGTaGGGCACTAGCACCTTCCTG +
Preference number: 3 (lower is better)
Translates to: LDLVSEKQNLRQRLPECTNELTE*GTSTFL
Trigger: CAGGAAGGTGCTAGTGCCCAACTCAGTCAACTCGTT...TGTGCATTCTGGGAGCCTCTGCCTTAAGTTTTGTTTTTCTGAGACAAGGTCTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
3UTR CCA 72 bp CCCTTGGGACAGGGAATAAGTGCAGAGGAAGAGGTGTaGATAGGAAGCAGTCTACATGAAAGAGTATTTATT +
Preference number: 3 (lower is better)
Translates to: PLGQGISAEEEV*IGSSLHERVFI
Trigger: AATAAATACTCTTTCATGTAGACTGCTTCCTATCCACACCTCTTCCTCTGCACTTATTCCCTGTCCCAAGGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
3UTR GCA 72 bp TCAGAAAAACAAAACTTAAGGCAGAGGCTCCCAGAATaGACATGTATTGTGTATGTGTATAGCAGAAGCTCT +
Preference number: 3 (lower is better)
Translates to: SEKQNLRQRLPE*TCIVYVYSRSS
Trigger: AGAGCTTCTGCTATACACATACACAATACATGTGCATTCTGGGAGCCTCTGCCTTAAGTTTTGTTTTTCTGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp CCTGAAGACAGTCACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCAGCTGCTGGGCTCCTTaGGGACCGGAGGTGGCGCCT +
Preference number: 4 (lower is better)
Translates to: PEDSHSEALTELPRPLAPSCWAP*GPEVAP
Trigger: AGGCGCCACCTCCGGTCCCCAAGGAGCCCAGCAGCT...GGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGTGACTGTCTTCAGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CCA 90 bp CGCGTGGGCTTCCAGTGCTGCAGCACCAATGAAGGCCGTGGCACAGCTGTGGCCAGCTGCTGGGCTCCTTaGGGACCGGAGGTGGCGCCT +
Preference number: 4 (lower is better)
Translates to: RVGFQCCSTNEGRGTAVASCWAP*GPEVAP
Trigger: AGGCGCCACCTCCGGTCCCCAAGGAGCCCAGCAGCT...GGCCACAGCTGTGCCACGGCCTTCATTGGTGCTGCAGCACTGGAAGCCCACGCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR GCA 90 bp GACAGTCACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCATGGTCTTCCATCAGCTGGCGTaGAGCCCGGGACGGGGAGAC +
Preference number: 4 (lower is better)
Translates to: DSHSEALTELPRPLAPMVFHQLA*SPGRGD
Trigger: GTCTCCCCGTCCCGGGCTGCACGCCAGCTGATGGAA...GACCATGGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGTGACTGTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp ACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCATGGTCAGCCTTTAGCTGCTGGGCTCCTTaGGGACCGGAGGTGGCGCCT +
Preference number: 4 (lower is better)
Translates to: TPRLSPSSPGLLPPWSAFSCWAP*GPEVAP
Trigger: AGGCGCCACCTCCGGTCCCCAAGGAGCCCAGCAGCT...AAAGGCTGACCATGGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CCA 90 bp CCTGAAGACAGTCACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCTCCCGGGGACGTTGCTaGGGTCAGACTCTGCGTCGA +
Preference number: 4 (lower is better)
Translates to: PEDSHSEALTELPRPLAPSRGRC*GQTLRR
Trigger: TCGACGCAGAGTCTGACCCCAGCAACGTCCCCGGGA...GGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGTGACTGTCTTCAGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR TCA 90 bp GACAGTCACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCATGGTCTTCGGGTCTGCTCCGTaGCGTAGAGCTGAGGCCCAT +
Preference number: 4 (lower is better)
Translates to: DSHSEALTELPRPLAPMVFGSAP*RRAEAH
Trigger: ATGGGCCTCAGCTCTACGTCACGGAGCAGACCCGAA...GACCATGGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGTGACTGTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR TCA 90 bp CCTGAAGACAGTCACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCTTCGGGTCTGCTCCGTaGCGTAGAGCTGAGGCCCAT +
Preference number: 4 (lower is better)
Translates to: PEDSHSEALTELPRPLAPFGSAP*RRAEAH
Trigger: ATGGGCCTCAGCTCTACGTCACGGAGCAGACCCGAA...GGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGTGACTGTCTTCAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR GCA 90 bp CCTGAAGACAGTCACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCGGGAGCTCCCCGACCTaGAGGATCTCACAGAGCATC +
Preference number: 4 (lower is better)
Translates to: PEDSHSEALTELPRPLAPGSSPT*RISQSI
Trigger: GATGCTCTGTGAGATCCTGCAGGTCGGGGAGCTCCC...GGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGTGACTGTCTTCAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp GACATGGTAGGGCCAAACCCCAGAGGCAGCAGCATGAGGCACAGGACGAGGCTGGTCCTTTCCATCAGCTaGCGTGCAGCCCGGGACGGG +
Preference number: 4 (lower is better)
Translates to: DMVGPNPRGSSMRHRTRLVLSIS*RAARDG
Trigger: CCCGTCCCGGGCTGCACGCCAGCTGATGGAAAGGAC...CAGCCTCGTCCTGTGCCTCATGCTGCTGCCTCTGGGGTTTGGCCCTACCATGTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR TCA 90 bp CGCGTGGGCTTCCAGTGCTGCAGCACCAATGAAGGCCGTGGCACAGCTGTGGCCTCCCCAGGAGAGCGCTaGGTCCATCAATCCAGATGC +
Preference number: 4 (lower is better)
Translates to: RVGFQCCSTNEGRGTAVASPGER*VHQSRC
Trigger: GCATCTGGATTGATGGACTCAGCGCTCTCCTGGGGA...GGCCACAGCTGTGCCACGGCCTTCATTGGTGCTGCAGCACTGGAAGCCCACGCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR GCA 90 bp TGCCCATCGCAGCCCAAGGTCTTGGCTTCGTTCAGCCCTCAAAGCCTGCGTTGCTTCCATCAGCTGGCGTaGAGCCCGGGACGGGGAGAC +
Preference number: 4 (lower is better)
Translates to: CPSQPKVLASFSPQSLRCFHQLA*SPGRGD
Trigger: GTCTCCCCGTCCCGGGCTGCACGCCAGCTGATGGAA...GCAACGCAGGCTTTGAGGGCTGAACGAAGCCAAGACCTTGGGCTGCGATGGGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
CDS-3UTR GCA 90 bp ACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCATGGTCAGCCTTTGGGAGCTCCCCGACCTaGAGGATCTCACAGAGCATC +
Preference number: 4 (lower is better)
Translates to: TPRLSPSSPGLLPPWSAFGSSPT*RISQSI
Trigger: GATGCTCTGTGAGATCCTGCAGGTCGGGGAGCTCCC...AAAGGCTGACCATGGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp TGCCCATCGCAGCCCAAGGTCTTGGCTTCGTTCAGCCCTCAAAGCCTGCGTTGCGTCCTTTCCATCAGCTaGCGTGCAGCCCGGGACGGG +
Preference number: 4 (lower is better)
Translates to: CPSQPKVLASFSPQSLRCVLSIS*RAARDG
Trigger: CCCGTCCCGGGCTGCACGCCAGCTGATGGAAAGGAC...GCAACGCAGGCTTTGAGGGCTGAACGAAGCCAAGACCTTGGGCTGCGATGGGCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp CCTGAAGACAGTCACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCTGGACACATCGACCATaGGCTGGCTCACGTACCCTG +
Preference number: 4 (lower is better)
Translates to: PEDSHSEALTELPRPLAPWTHRP*AGSRTL
Trigger: CAGGGTACGTGAGCCAGCCCATGGTCGATGTGTCCA...GGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGTGACTGTCTTCAGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR GCA 90 bp GACATGGTAGGGCCAAACCCCAGAGGCAGCAGCATGAGGCACAGGACGAGGCTGGGGAGCTCCCCGACCTaGAGGATCTCACAGAGCATC +
Preference number: 4 (lower is better)
Translates to: DMVGPNPRGSSMRHRTRLGSSPT*RISQSI
Trigger: GATGCTCTGTGAGATCCTGCAGGTCGGGGAGCTCCC...CAGCCTCGTCCTGTGCCTCATGCTGCTGCCTCTGGGGTTTGGCCCTACCATGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp ACTAGACATGGTAGGGCCAAACCCCAGAGGCAGCAGCATGAGGCACAGGACGAGGTCCTTTCCATCAGCTaGCGTGCAGCCCGGGACGGG +
Preference number: 4 (lower is better)
Translates to: TRHGRAKPQRQQHEAQDEVLSIS*RAARDG
Trigger: CCCGTCCCGGGCTGCACGCCAGCTGATGGAAAGGAC...CTCGTCCTGTGCCTCATGCTGCTGCCTCTGGGGTTTGGCCCTACCATGTCTAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp GCGCTCTATCATCCCAACAGAGCCCTGCTGGCCCAAGGTCCTCTCCTCTTGACCTCCCGGGGACGTTGCTaGGGTCAGACTCTGCGTCGA +
Preference number: 4 (lower is better)
Translates to: ALYHPNRALLAQGPLLLTSRGRC*GQTLRR
Trigger: TCGACGCAGAGTCTGACCCCAGCAACGTCCCCGGGA...GGTCAAGAGGAGAGGACCTTGGGCCAGCAGGGCTCTGTTGGGATGATAGAGCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp GGCACAAACCACAGCGCCAGGAAGGGGAGAAAGGGAAGGCAACACCCCTGTCTGTCCCGGGGACGTTGCTaGGGTCAGACTCTGCGTCGA +
Preference number: 4 (lower is better)
Translates to: GTNHSARKGRKGRQHPCLSRGRC*GQTLRR
Trigger: TCGACGCAGAGTCTGACCCCAGCAACGTCCCCGGGA...CAGACAGGGGTGTTGCCTTCCCTTTCTCCCCTTCCTGGCGCTGTGGTTTGTGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
3UTR CAA 72 bp GTCACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTaGCCCCCATGGTCAGCCTTTCATGGACCAGCTTTG +
Preference number: 4 (lower is better)
Translates to: VTPRLSPSSPGL*PPWSAFHGPAL
Trigger: CAAAGCTGGTCCATGAAAGGCTGACCATGGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGTGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR TCA 90 bp AGGAAAGAGGCTGTGCGCGTGGGCTTCCAGTGCTGCAGCACCAATGAAGGCCGTTTCGGGTCTGCTCCGTaGCGTAGAGCTGAGGCCCAT +
Preference number: 4 (lower is better)
Translates to: RKEAVRVGFQCCSTNEGRFGSAP*RRAEAH
Trigger: ATGGGCCTCAGCTCTACGTCACGGAGCAGACCCGAA...ACGGCCTTCATTGGTGCTGCAGCACTGGAAGCCCACGCGCACAGCCTCTTTCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR TCA 90 bp CTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCCCTGCTGGCCCAAGGCACAGAGCATCTTGGTaGGCTCGATGGCACTGCGGC +
Preference number: 4 (lower is better)
Translates to: LCLAHCALSSQQSPAGPRHRASW*ARWHCG
Trigger: GCCGCAGTGCCATCGAGCTCACCAAGATGCTCTGTG...CCTTGGGCCAGCAGGGCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR GCA 90 bp CCAGGGACCGCTGGAGGATGGACACATCGACCATGGGCTGGCTCACGTACCCTGCTCCTTGATGATGGATaGCAGCGGCCGTTTCTGGTC +
Preference number: 4 (lower is better)
Translates to: PGTAGGWTHRPWAGSRTLLLDDG*QRPFLV
Trigger: GACCAGAAACGGCCGCTGGCATCCATCATCAAGGAG...CAGGGTACGTGAGCCAGCCCATGGTCGATGTGTCCATCCTCCAGCGGTCCCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126318.8
CDS-3UTR GCA 90 bp CGCGTGGGCTTCCAGTGCTGCAGCACCAATGAAGGCCGTGGCACAGCTGTGGCCCCGAAGGTGCTTCTGTaGAAAGGCATTGGCCATGTC +
Preference number: 4 (lower is better)
Translates to: RVGFQCCSTNEGRGTAVAPKVLL*KGIGHV
Trigger: GACATGGCCAATGCCTTTGCACAGAAGCACCTTCGG...GGCCACAGCTGTGCCACGGCCTTCATTGGTGCTGCAGCACTGGAAGCCCACGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp CATCCCAACAGAGCCCTGCTGGCCCAAGGTCCTCTCCTCTTGACCCCAAGTGCTAGTGGGACAGGAGCTTaGTCCCACTCTCCACGAGCC +
Preference number: 4 (lower is better)
Translates to: HPNRALLAQGPLLLTPSASGTGA*SHSPRA
Trigger: GGCTCGTGGAGAGTGGGACCAAGCTCCTGTCCCACT...AGCACTTGGGGTCAAGAGGAGAGGACCTTGGGCCAGCAGGGCTCTGTTGGGATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp GGCACAAACCACAGCGCCAGGAAGGGGAGAAAGGGAAGGCAACACCCCTGTCTGATGGCCAGGGACCGCTaGAGGATGGACACATCGACC +
Preference number: 4 (lower is better)
Translates to: GTNHSARKGRKGRQHPCLMARDR*RMDTST
Trigger: GGTCGATGTGTCCATCCTCCAGCGGTCCCTGGCCAT...CAGACAGGGGTGTTGCCTTCCCTTTCTCCCCTTCCTGGCGCTGTGGTTTGTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp CATCCCAACAGAGCCCTGCTGGCCCAAGGTCCTCTCCTCTTGACCCCAAGTGCTATGGCCAGGGACCGCTaGAGGATGGACACATCGACC +
Preference number: 4 (lower is better)
Translates to: HPNRALLAQGPLLLTPSAMARDR*RMDTST
Trigger: GGTCGATGTGTCCATCCTCCAGCGGTCCCTGGCCAT...AGCACTTGGGGTCAAGAGGAGAGGACCTTGGGCCAGCAGGGCTCTGTTGGGATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp ACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCATGGTCAGCCTTTATTCCAGGAGGAGTCTaGGTGAAGTCCAAGGCTGGG +
Preference number: 4 (lower is better)
Translates to: TPRLSPSSPGLLPPWSAFIPGGV*VKSKAG
Trigger: CCCAGCCTTGGACTTCACCCAGACTCCTCCTGGAAT...AAAGGCTGACCATGGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp CATCCCAACAGAGCCCTGCTGGCCCAAGGTCCTCTCCTCTTGACCCCAAGTGCTGGGATACCGCTGTGCTaGCCACACCTCCTCACAGTG +
Preference number: 4 (lower is better)
Translates to: HPNRALLAQGPLLLTPSAGIPLC*PHLLTV
Trigger: CACTGTGAGGAGGTGTGGCCAGCACAGCGGTATCCC...AGCACTTGGGGTCAAGAGGAGAGGACCTTGGGCCAGCAGGGCTCTGTTGGGATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp GCGCTCTATCATCCCAACAGAGCCCTGCTGGCCCAAGGTCCTCTCCTCTTGACCGGGATACCGCTGTGCTaGCCACACCTCCTCACAGTG +
Preference number: 4 (lower is better)
Translates to: ALYHPNRALLAQGPLLLTGIPLC*PHLLTV
Trigger: CACTGTGAGGAGGTGTGGCCAGCACAGCGGTATCCC...GGTCAAGAGGAGAGGACCTTGGGCCAGCAGGGCTCTGTTGGGATGATAGAGCGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR TCA 90 bp GACAGTCACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCATGGTCGGTCTCCATACTAGATaGCTGGGTCCTTTCCATCAG +
Preference number: 4 (lower is better)
Translates to: DSHSEALTELPRPLAPMVGLHTR*LGPFHQ
Trigger: CTGATGGAAAGGACCCAGTCATCTAGTATGGAGACC...GACCATGGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGTGACTGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR TCA 90 bp ACTAGACATGGTAGGGCCAAACCCCAGAGGCAGCAGCATGAGGCACAGGACGAGCACAGAGCATCTTGGTaGGCTCGATGGCACTGCGGC +
Preference number: 4 (lower is better)
Translates to: TRHGRAKPQRQQHEAQDEHRASW*ARWHCG
Trigger: GCCGCAGTGCCATCGAGCTCACCAAGATGCTCTGTG...CTCGTCCTGTGCCTCATGCTGCTGCCTCTGGGGTTTGGCCCTACCATGTCTAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR TCA 90 bp CCTGAAGACAGTCACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCAATGTCACCTCCCCTTaGGGGTTGTCATCCAAGTCA +
Preference number: 4 (lower is better)
Translates to: PEDSHSEALTELPRPLAPNVTSP*GLSSKS
Trigger: TGACTTGGATGACAACCCTCAAGGGGAGGTGACATT...GGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGTGACTGTCTTCAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR TCA 90 bp GGCACAAACCACAGCGCCAGGAAGGGGAGAAAGGGAAGGCAACACCCCTGTCTGTCCCCAGGAGAGCGCTaGGTCCATCAATCCAGATGC +
Preference number: 4 (lower is better)
Translates to: GTNHSARKGRKGRQHPCLSPGER*VHQSRC
Trigger: GCATCTGGATTGATGGACTCAGCGCTCTCCTGGGGA...CAGACAGGGGTGTTGCCTTCCCTTTCTCCCCTTCCTGGCGCTGTGGTTTGTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR TCA 90 bp GGCACAAACCACAGCGCCAGGAAGGGGAGAAAGGGAAGGCAACACCCCTGTCTGGGCGCCTCGGGGATCTaGATGTTCTCCAAGTCCAGA +
Preference number: 4 (lower is better)
Translates to: GTNHSARKGRKGRQHPCLGASGI*MFSKSR
Trigger: TCTGGACTTGGAGAACATTCAGATCCCCGAGGCGCC...CAGACAGGGGTGTTGCCTTCCCTTTCTCCCCTTCCTGGCGCTGTGGTTTGTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR GCA 90 bp TGCTGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCTTCCATCAGCTGGCGTaGAGCCCGGGACGGGGAGAC +
Preference number: 4 (lower is better)
Translates to: CCCSLLCLAHCALSSQQSFHQLA*SPGRGD
Trigger: GTCTCCCCGTCCCGGGCTGCACGCCAGCTGATGGAA...GCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR GCA 90 bp GACATGGTAGGGCCAAACCCCAGAGGCAGCAGCATGAGGCACAGGACGAGGCTGTCCTGGTTGGAGACCTaGAGGTGGGAGATGAGCTGT +
Preference number: 4 (lower is better)
Translates to: DMVGPNPRGSSMRHRTRLSWLET*RWEMSC
Trigger: ACAGCTCATCTCCCACCTGCAGGTCTCCAACCAGGA...CAGCCTCGTCCTGTGCCTCATGCTGCTGCCTCTGGGGTTTGGCCCTACCATGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR GCA 90 bp GACATGGTAGGGCCAAACCCCAGAGGCAGCAGCATGAGGCACAGGACGAGGCTGCGGTTGAGGCGCTGTTaGTTGATCAGCTCCAGGATC +
Preference number: 4 (lower is better)
Translates to: DMVGPNPRGSSMRHRTRLRLRRC*LISSRI
Trigger: GATCCTGGAGCTGATCAAGCAACAGCGCCTCAACCG...CAGCCTCGTCCTGTGCCTCATGCTGCTGCCTCTGGGGTTTGGCCCTACCATGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR GCA 90 bp GCGCTCTATCATCCCAACAGAGCCCTGCTGGCCCAAGGTCCTCTCCTCTTGACCGGAAAACCCTCCCTGTaGCAGGCCAGCTGCTCTAAG +
Preference number: 4 (lower is better)
Translates to: ALYHPNRALLAQGPLLLTGKPSL*QASCSK
Trigger: CTTAGAGCAGCTGGCCTGGCACAGGGAGGGTTTTCC...GGTCAAGAGGAGAGGACCTTGGGCCAGCAGGGCTCTGTTGGGATGATAGAGCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp TGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCCCTGTCCTTTCCATCAGCTaGCGTGCAGCCCGGGACGGG +
Preference number: 4 (lower is better)
Translates to: CCSLLCLAHCALSSQQSPVLSIS*RAARDG
Trigger: CCCGTCCCGGGCTGCACGCCAGCTGATGGAAAGGAC...AGGGCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp GCGCTCTATCATCCCAACAGAGCCCTGCTGGCCCAAGGTCCTCTCCTCTTGACCTGGACACATCGACCATaGGCTGGCTCACGTACCCTG +
Preference number: 4 (lower is better)
Translates to: ALYHPNRALLAQGPLLLTWTHRP*AGSRTL
Trigger: CAGGGTACGTGAGCCAGCCCATGGTCGATGTGTCCA...GGTCAAGAGGAGAGGACCTTGGGCCAGCAGGGCTCTGTTGGGATGATAGAGCGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp AGGAAAGAGGCTGTGCGCGTGGGCTTCCAGTGCTGCAGCACCAATGAAGGCCGTTTGGAGACCTGCAGGTaGGAGATGAGCTGTCCCACG +
Preference number: 4 (lower is better)
Translates to: RKEAVRVGFQCCSTNEGRLETCR*EMSCPT
Trigger: CGTGGGACAGCTCATCTCCCACCTGCAGGTCTCCAA...ACGGCCTTCATTGGTGCTGCAGCACTGGAAGCCCACGCGCACAGCCTCTTTCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp CCTGAAGACAGTCACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCCTCATCCTCTCAGACTaGCGCAACCGCAGAATTTCT +
Preference number: 4 (lower is better)
Translates to: PEDSHSEALTELPRPLAPLILSD*RNRRIS
Trigger: AGAAATTCTGCGGTTGCGCCAGTCTGAGAGGATGAG...GGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGTGACTGTCTTCAGG
60% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CCA 90 bp CCTGAAGACAGTCACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCTCTTGGTTAGCTCGCTaGACATATCCTTCCCCAGGA +
Preference number: 4 (lower is better)
Translates to: PEDSHSEALTELPRPLAPSWLAR*TYPSPG
Trigger: TCCTGGGGAAGGATATGTCCAGCGAGCTAACCAAGA...GGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGTGACTGTCTTCAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR TCA 90 bp ACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCATGGTCAGCCTTTGGTCTCCATACTAGATaGCTGGGTCCTTTCCATCAG +
Preference number: 4 (lower is better)
Translates to: TPRLSPSSPGLLPPWSAFGLHTR*LGPFHQ
Trigger: CTGATGGAAAGGACCCAGTCATCTAGTATGGAGACC...AAAGGCTGACCATGGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR TCA 90 bp ACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCATGGTCAGCCTTTAATGTCACCTCCCCTTaGGGGTTGTCATCCAAGTCA +
Preference number: 4 (lower is better)
Translates to: TPRLSPSSPGLLPPWSAFNVTSP*GLSSKS
Trigger: TGACTTGGATGACAACCCTCAAGGGGAGGTGACATT...AAAGGCTGACCATGGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR GCA 90 bp GCGCTCTATCATCCCAACAGAGCCCTGCTGGCCCAAGGTCCTCTCCTCTTGACCCTCCTTGATGATGGATaGCAGCGGCCGTTTCTGGTC +
Preference number: 4 (lower is better)
Translates to: ALYHPNRALLAQGPLLLTLLDDG*QRPFLV
Trigger: GACCAGAAACGGCCGCTGGCATCCATCATCAAGGAG...GGTCAAGAGGAGAGGACCTTGGGCCAGCAGGGCTCTGTTGGGATGATAGAGCGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR GCA 90 bp TTCTGCTGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGTTCCATCAGCTGGCGTaGAGCCCGGGACGGGGAGAC +
Preference number: 4 (lower is better)
Translates to: FCCCSLLCLAHCALSSQQFHQLA*SPGRGD
Trigger: GTCTCCCCGTCCCGGGCTGCACGCCAGCTGATGGAA...CTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCAGCAGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR GCA 90 bp CATCCCAACAGAGCCCTGCTGGCCCAAGGTCCTCTCCTCTTGACCCCAAGTGCTTCCTGGTTGGAGACCTaGAGGTGGGAGATGAGCTGT +
Preference number: 4 (lower is better)
Translates to: HPNRALLAQGPLLLTPSASWLET*RWEMSC
Trigger: ACAGCTCATCTCCCACCTGCAGGTCTCCAACCAGGA...AGCACTTGGGGTCAAGAGGAGAGGACCTTGGGCCAGCAGGGCTCTGTTGGGATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR GCA 90 bp GACATGGTAGGGCCAAACCCCAGAGGCAGCAGCATGAGGCACAGGACGAGGCTGGCAGCTTCATCTCCATaGTCAGCAGCGTGTCCAAGT +
Preference number: 4 (lower is better)
Translates to: DMVGPNPRGSSMRHRTRLAASSP*SAACPS
Trigger: ACTTGGACACGCTGCTGAGCATGGAGATGAAGCTGC...CAGCCTCGTCCTGTGCCTCATGCTGCTGCCTCTGGGGTTTGGCCCTACCATGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CCA 90 bp TCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCTGGGCCCCTGGACACATCGACCATaGGCTGGCTCACGTACCCTG +
Preference number: 4 (lower is better)
Translates to: SLQSLYKWRGLPVSLLGPWTHRP*AGSRTL
Trigger: CAGGGTACGTGAGCCAGCCCATGGTCGATGTGTCCA...GGGGCCCAGGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp GACAGTCACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCATGGTCTTCTGGTACAGGCTCTaGCTGTTTAGTACCATGCTC +
Preference number: 4 (lower is better)
Translates to: DSHSEALTELPRPLAPMVFWYRL*LFSTML
Trigger: GAGCATGGTACTAAACAGCCAGAGCCTGTACCAGAA...GACCATGGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGTGACTGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp TCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCCCTGCTGGCCCTTGGAGACCTGCAGGTaGGAGATGAGCTGTCCCACG +
Preference number: 4 (lower is better)
Translates to: SSVPSSLRSIIPTEPCWPLETCR*EMSCPT
Trigger: CGTGGGACAGCTCATCTCCCACCTGCAGGTCTCCAA...GGGCCAGCAGGGCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp TGCCCATCGCAGCCCAAGGTCTTGGCTTCGTTCAGCCCTCAAAGCCTGCGTTGCTCTGGATCTCCTGGTTaGAGACCTGCAGGTGGGAGA +
Preference number: 4 (lower is better)
Translates to: CPSQPKVLASFSPQSLRCSGSPG*RPAGGR
Trigger: TCTCCCACCTGCAGGTCTCCAACCAGGAGATCCAGA...GCAACGCAGGCTTTGAGGGCTGAACGAAGCCAAGACCTTGGGCTGCGATGGGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp CCTGAAGACAGTCACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCTCTGTGCAAAGGCATTaGCCATGTCCTGTCTCTTGT +
Preference number: 4 (lower is better)
Translates to: PEDSHSEALTELPRPLAPSVQRH*PCPVSC
Trigger: ACAAGAGACAGGACATGGCCAATGCCTTTGCACAGA...GGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGTGACTGTCTTCAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp TTTGAAAGGCACAAGTACTCGAGCTGTTCCCTGGCTGTGTCCCTGGCAGGGGAATCCCGGGGACGTTGCTaGGGTCAGACTCTGCGTCGA +
Preference number: 4 (lower is better)
Translates to: FERHKYSSCSLAVSLAGESRGRC*GQTLRR
Trigger: TCGACGCAGAGTCTGACCCCAGCAACGTCCCCGGGA...TTCCCCTGCCAGGGACACAGCCAGGGAACAGCTCGAGTACTTGTGCCTTTCAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp CATCCCAACAGAGCCCTGCTGGCCCAAGGTCCTCTCCTCTTGACCCCAAGTGCTATTCCAGGAGGAGTCTaGGTGAAGTCCAAGGCTGGG +
Preference number: 4 (lower is better)
Translates to: HPNRALLAQGPLLLTPSAIPGGV*VKSKAG
Trigger: CCCAGCCTTGGACTTCACCCAGACTCCTCCTGGAAT...AGCACTTGGGGTCAAGAGGAGAGGACCTTGGGCCAGCAGGGCTCTGTTGGGATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp GGCACAAACCACAGCGCCAGGAAGGGGAGAAAGGGAAGGCAACACCCCTGTCTGATTCCAGGAGGAGTCTaGGTGAAGTCCAAGGCTGGG +
Preference number: 4 (lower is better)
Translates to: GTNHSARKGRKGRQHPCLIPGGV*VKSKAG
Trigger: CCCAGCCTTGGACTTCACCCAGACTCCTCCTGGAAT...CAGACAGGGGTGTTGCCTTCCCTTTCTCCCCTTCCTGGCGCTGTGGTTTGTGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp CTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCCCTGCTGGCCCAAGGATTCCAGGAGGAGTCTaGGTGAAGTCCAAGGCTGGG +
Preference number: 4 (lower is better)
Translates to: LCLAHCALSSQQSPAGPRIPGGV*VKSKAG
Trigger: CCCAGCCTTGGACTTCACCCAGACTCCTCCTGGAAT...CCTTGGGCCAGCAGGGCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp ACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCATGGTCAGCCTTTCTCATCCTCTCAGACTaGCGCAACCGCAGAATTTCT +
Preference number: 4 (lower is better)
Translates to: TPRLSPSSPGLLPPWSAFLILSD*RNRRIS
Trigger: AGAAATTCTGCGGTTGCGCCAGTCTGAGAGGATGAG...AAAGGCTGACCATGGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CCA 90 bp CGCGTGGGCTTCCAGTGCTGCAGCACCAATGAAGGCCGTGGCACAGCTGTGGCCAAGCTCCACAATTGGTaGGGACTGGAAATCATCCTG +
Preference number: 4 (lower is better)
Translates to: RVGFQCCSTNEGRGTAVAKLHNW*GLEIIL
Trigger: CAGGATGATTTCCAGTCCCCACCAATTGTGGAGCTT...GGCCACAGCTGTGCCACGGCCTTCATTGGTGCTGCAGCACTGGAAGCCCACGCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CCA 90 bp CCTGAAGACAGTCACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCAAGCTCCACAATTGGTaGGGACTGGAAATCATCCTG +
Preference number: 4 (lower is better)
Translates to: PEDSHSEALTELPRPLAPKLHNW*GLEIIL
Trigger: CAGGATGATTTCCAGTCCCCACCAATTGTGGAGCTT...GGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGTGACTGTCTTCAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CCA 90 bp CCTGAAGACAGTCACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCTCGAAGCTCCACAATTaGTGGGGACTGGAAATCATC +
Preference number: 4 (lower is better)
Translates to: PEDSHSEALTELPRPLAPSKLHN*WGLEII
Trigger: GATGATTTCCAGTCCCCACCAATTGTGGAGCTTCGA...GGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGTGACTGTCTTCAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CCA 90 bp ACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCATGGTCAGCCTTTTCTTGGTTAGCTCGCTaGACATATCCTTCCCCAGGA +
Preference number: 4 (lower is better)
Translates to: TPRLSPSSPGLLPPWSAFSWLAR*TYPSPG
Trigger: TCCTGGGGAAGGATATGTCCAGCGAGCTAACCAAGA...AAAGGCTGACCATGGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CCA 90 bp CTGCAAGGACAAGAGAGACGGGTGTCTCTAGAGACTAGACATGGTAGGGCCAAAAGCTGCTGGGCTCCTTaGGGACCGGAGGTGGCGCCT +
Preference number: 4 (lower is better)
Translates to: LQGQERRVSLETRHGRAKSCWAP*GPEVAP
Trigger: AGGCGCCACCTCCGGTCCCCAAGGAGCCCAGCAGCT...TTTGGCCCTACCATGTCTAGTCTCTAGAGACACCCGTCTCTCTTGTCCTTGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR TCA 90 bp TGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCCCTTTCGGGTCTGCTCCGTaGCGTAGAGCTGAGGCCCAT +
Preference number: 4 (lower is better)
Translates to: CCSLLCLAHCALSSQQSPFGSAP*RRAEAH
Trigger: ATGGGCCTCAGCTCTACGTCACGGAGCAGACCCGAA...AGGGCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR TCA 90 bp CCTGAAGACAGTCACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCTTGGACGATTCCCTCTaGTCACATGGTTCAGGATTA +
Preference number: 4 (lower is better)
Translates to: PEDSHSEALTELPRPLAPLDDSL*SHGSGL
Trigger: TAATCCTGAACCATGTGATCAGAGGGAATCGTCCAA...GGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGTGACTGTCTTCAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR TCA 90 bp TCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCCCTGCTGGCCCCTAATCCCAGCCCTCTaGAGGCAGAGGAAGACAGAC +
Preference number: 4 (lower is better)
Translates to: SSVPSSLRSIIPTEPCWPLIPAL*RQRKTD
Trigger: GTCTGTCTTCCTCTGCCTTCAGAGGGCTGGGATTAG...GGGCCAGCAGGGCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR TCA 90 bp TGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCCCTTCTGGCTCCACAGCCTaGCCAGGTTGGCTCCAGGTA +
Preference number: 4 (lower is better)
Translates to: CCSLLCLAHCALSSQQSPSGSTA*PGWLQV
Trigger: TACCTGGAGCCAACCTGGTCAGGCTGTGGAGCCAGA...AGGGCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR TCA 90 bp TCATTCCTAAAGCCTAAGAGAGCAGGACTCAGGCTGGAGGCCTCTGCCTGGCCATCCCCAGGAGAGCGCTaGGTCCATCAATCCAGATGC +
Preference number: 4 (lower is better)
Translates to: SFLKPKRAGLRLEASAWPSPGER*VHQSRC
Trigger: GCATCTGGATTGATGGACTCAGCGCTCTCCTGGGGA...TGGCCAGGCAGAGGCCTCCAGCCTGAGTCCTGCTCTCTTAGGCTTTAGGAATGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR TCA 90 bp TCATTCCTAAAGCCTAAGAGAGCAGGACTCAGGCTGGAGGCCTCTGCCTGGCCAGGCGCCTCGGGGATCTaGATGTTCTCCAAGTCCAGA +
Preference number: 4 (lower is better)
Translates to: SFLKPKRAGLRLEASAWPGASGI*MFSKSR
Trigger: TCTGGACTTGGAGAACATTCAGATCCCCGAGGCGCC...TGGCCAGGCAGAGGCCTCCAGCCTGAGTCCTGCTCTCTTAGGCTTTAGGAATGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR GCA 90 bp ACCACAATCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCTTTCCATCAGCTGGCGTaGAGCCCGGGACGGGGAGAC +
Preference number: 4 (lower is better)
Translates to: TTITTEFVQVAWAASVSPFHQLA*SPGRGD
Trigger: GTCTCCCCGTCCCGGGCTGCACGCCAGCTGATGGAA...AGGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGATTGTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR GCA 90 bp CTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCCCTGCTGGCCCAAGGGGCTGTTTAGTACCATaGTCTCTAGGATGGCCAGGG +
Preference number: 4 (lower is better)
Translates to: LCLAHCALSSQQSPAGPRGCLVP*SLGWPG
Trigger: CCCTGGCCATCCTAGAGAGCATGGTACTAAACAGCC...CCTTGGGCCAGCAGGGCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR GCA 90 bp TCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCTGGGCCCCTCCTGGTTGGAGACCTaGAGGTGGGAGATGAGCTGT +
Preference number: 4 (lower is better)
Translates to: SLQSLYKWRGLPVSLLGPSWLET*RWEMSC
Trigger: ACAGCTCATCTCCCACCTGCAGGTCTCCAACCAGGA...GGGGCCCAGGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR GCA 90 bp AGGAAAGAGGCTGTGCGCGTGGGCTTCCAGTGCTGCAGCACCAATGAAGGCCGTCCGAAGGTGCTTCTGTaGAAAGGCATTGGCCATGTC +
Preference number: 4 (lower is better)
Translates to: RKEAVRVGFQCCSTNEGRPKVLL*KGIGHV
Trigger: GACATGGCCAATGCCTTTGCACAGAAGCACCTTCGG...ACGGCCTTCATTGGTGCTGCAGCACTGGAAGCCCACGCGCACAGCCTCTTTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR GCA 90 bp CGCGTGGGCTTCCAGTGCTGCAGCACCAATGAAGGCCGTGGCACAGCTGTGGCCATTATGGACCGAAGGTaGTTCTGTGCAAAGGCATTG +
Preference number: 4 (lower is better)
Translates to: RVGFQCCSTNEGRGTAVAIMDRR*FCAKAL
Trigger: CAATGCCTTTGCACAGAAGCACCTTCGGTCCATAAT...GGCCACAGCTGTGCCACGGCCTTCATTGGTGCTGCAGCACTGGAAGCCCACGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR GCA 90 bp CATCCCAACAGAGCCCTGCTGGCCCAAGGTCCTCTCCTCTTGACCCCAAGTGCTAACCTTGTGGTTCAGTaGCAAGCGGCAGTGCCAGAA +
Preference number: 4 (lower is better)
Translates to: HPNRALLAQGPLLLTPSANLVVQ*QAAVPE
Trigger: TTCTGGCACTGCCGCTTGGCACTGAACCACAAGGTT...AGCACTTGGGGTCAAGAGGAGAGGACCTTGGGCCAGCAGGGCTCTGTTGGGATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR GCA 90 bp CCTGAAGACAGTCACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCACAGGAATTTTCTCCTaGAGGGATTCGAATGTCACC +
Preference number: 4 (lower is better)
Translates to: PEDSHSEALTELPRPLAPTGIFS*RDSNVT
Trigger: GGTGACATTCGAATCCCTGCAGGAGAAAATTCCTGT...GGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGTGACTGTCTTCAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp TGCTGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCAGTGGGACAGGAGCTTaGTCCCACTCTCCACGAGCC +
Preference number: 4 (lower is better)
Translates to: CCCSLLCLAHCALSSQQSSGTGA*SHSPRA
Trigger: GGCTCGTGGAGAGTGGGACCAAGCTCCTGTCCCACT...GCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp TGCTGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCATGGCCAGGGACCGCTaGAGGATGGACACATCGACC +
Preference number: 4 (lower is better)
Translates to: CCCSLLCLAHCALSSQQSMARDR*RMDTST
Trigger: GGTCGATGTGTCCATCCTCCAGCGGTCCCTGGCCAT...GCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp GACATGGTAGGGCCAAACCCCAGAGGCAGCAGCATGAGGCACAGGACGAGGCTGTCCTCCGCTATCTTCTaGTACAGGCTCTGGCTGTTT +
Preference number: 4 (lower is better)
Translates to: DMVGPNPRGSSMRHRTRLSSAIF*YRLWLF
Trigger: AAACAGCCAGAGCCTGTACCAGAAGATAGCGGAGGA...CAGCCTCGTCCTGTGCCTCATGCTGCTGCCTCTGGGGTTTGGCCCTACCATGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp ACTAGACATGGTAGGGCCAAACCCCAGAGGCAGCAGCATGAGGCACAGGACGAGTCTGGATCTCCTGGTTaGAGACCTGCAGGTGGGAGA +
Preference number: 4 (lower is better)
Translates to: TRHGRAKPQRQQHEAQDESGSPG*RPAGGR
Trigger: TCTCCCACCTGCAGGTCTCCAACCAGGAGATCCAGA...CTCGTCCTGTGCCTCATGCTGCTGCCTCTGGGGTTTGGCCCTACCATGTCTAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR TCA 90 bp TTCTGCTGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGTTCGGGTCTGCTCCGTaGCGTAGAGCTGAGGCCCAT +
Preference number: 4 (lower is better)
Translates to: FCCCSLLCLAHCALSSQQFGSAP*RRAEAH
Trigger: ATGGGCCTCAGCTCTACGTCACGGAGCAGACCCGAA...CTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCAGCAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR TCA 90 bp GCGCTCTATCATCCCAACAGAGCCCTGCTGGCCCAAGGTCCTCTCCTCTTGACCGGTCTCCATACTAGATaGCTGGGTCCTTTCCATCAG +
Preference number: 4 (lower is better)
Translates to: ALYHPNRALLAQGPLLLTGLHTR*LGPFHQ
Trigger: CTGATGGAAAGGACCCAGTCATCTAGTATGGAGACC...GGTCAAGAGGAGAGGACCTTGGGCCAGCAGGGCTCTGTTGGGATGATAGAGCGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR TCA 90 bp GCGCTCTATCATCCCAACAGAGCCCTGCTGGCCCAAGGTCCTCTCCTCTTGACCAATGTCACCTCCCCTTaGGGGTTGTCATCCAAGTCA +
Preference number: 4 (lower is better)
Translates to: ALYHPNRALLAQGPLLLTNVTSP*GLSSKS
Trigger: TGACTTGGATGACAACCCTCAAGGGGAGGTGACATT...GGTCAAGAGGAGAGGACCTTGGGCCAGCAGGGCTCTGTTGGGATGATAGAGCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR TCA 90 bp CGCGTGGGCTTCCAGTGCTGCAGCACCAATGAAGGCCGTGGCACAGCTGTGGCCCTCTTCTCTTTCATGTaGGGACAGTCTTTTCCAGTA +
Preference number: 4 (lower is better)
Translates to: RVGFQCCSTNEGRGTAVALFSFM*GQSFPV
Trigger: TACTGGAAAAGACTGTCCTCACATGAAAGAGAAGAG...GGCCACAGCTGTGCCACGGCCTTCATTGGTGCTGCAGCACTGGAAGCCCACGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR TCA 90 bp CCTGAAGACAGTCACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCACTTGTTGGGAGCAATaGAATTCAGTGTCTCATCAG +
Preference number: 4 (lower is better)
Translates to: PEDSHSEALTELPRPLAPTCWEQ*NSVSHQ
Trigger: CTGATGAGACACTGAATTTCATTGCTCCCAACAAGT...GGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGTGACTGTCTTCAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR TCA 90 bp TGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCCCTAGACAGACCTCTGTGTaGAGTGGGCAGTCCAGCCCA +
Preference number: 4 (lower is better)
Translates to: CCSLLCLAHCALSSQQSPRQTSV*SGQSSP
Trigger: TGGGCTGGACTGCCCACTTCACACAGAGGTCTGTCT...AGGGCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR TCA 90 bp TTTGAAAGGCACAAGTACTCGAGCTGTTCCCTGGCTGTGTCCCTGGCAGGGGAAGGCGCCTCGGGGATCTaGATGTTCTCCAAGTCCAGA +
Preference number: 4 (lower is better)
Translates to: FERHKYSSCSLAVSLAGEGASGI*MFSKSR
Trigger: TCTGGACTTGGAGAACATTCAGATCCCCGAGGCGCC...TTCCCCTGCCAGGGACACAGCCAGGGAACAGCTCGAGTACTTGTGCCTTTCAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
CDS-3UTR GCA 90 bp ATCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCTGGGCCCCTCCTTGATGATGGATaGCAGCGGCCGTTTCTGGTC +
Preference number: 4 (lower is better)
Translates to: ITTEFVQVAWAASVSPGPLLDDG*QRPFLV
Trigger: GACCAGAAACGGCCGCTGGCATCCATCATCAAGGAG...GGGCCCAGGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR GCA 90 bp TGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCCCTGCTGGGGTCAGACTCTaGGTCGAAGGCAATCCTCCT +
Preference number: 4 (lower is better)
Translates to: CCSLLCLAHCALSSQQSPAGVRL*VEGNPP
Trigger: AGGAGGATTGCCTTCGACGCAGAGTCTGACCCCAGC...AGGGCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR GCA 90 bp GAGGGGCCTGTAACTGAGGGGGCATGGGAATATTGTGCCTCAGCAAGGAAGAGAGCTGGGGTCAGACTCTaGGTCGAAGGCAATCCTCCT +
Preference number: 4 (lower is better)
Translates to: EGPVTEGAWEYCASARKRAGVRL*VEGNPP
Trigger: AGGAGGATTGCCTTCGACGCAGAGTCTGACCCCAGC...TCTCTTCCTTGCTGAGGCACAATATTCCCATGCCCCCTCAGTTACAGGCCCCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR GCA 90 bp GACAGTCACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCATGGTCTGCTCTCGGACAACTTaGATAACCTTGTTGAAATCC +
Preference number: 4 (lower is better)
Translates to: DSHSEALTELPRPLAPMVCSRTT*ITLLKS
Trigger: GGATTTCAACAAGGTTATGCAAGTTGTCCGAGAGCA...GACCATGGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGTGACTGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR GCA 90 bp AAGGCACAAGTACTCGAGCTGTTCCCTGGCTGTGTCCCTGGCAGGGGAAAAAGGCGGTTGAGGCGCTGTTaGTTGATCAGCTCCAGGATC +
Preference number: 4 (lower is better)
Translates to: KAQVLELFPGCVPGRGKRRLRRC*LISSRI
Trigger: GATCCTGGAGCTGATCAAGCAACAGCGCCTCAACCG...CCTTTTTCCCCTGCCAGGGACACAGCCAGGGAACAGCTCGAGTACTTGTGCCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
CDS-3UTR GCA 90 bp ACTAGACATGGTAGGGCCAAACCCCAGAGGCAGCAGCATGAGGCACAGGACGAGAACCTTGTGGTTCAGTaGCAAGCGGCAGTGCCAGAA +
Preference number: 4 (lower is better)
Translates to: TRHGRAKPQRQQHEAQDENLVVQ*QAAVPE
Trigger: TTCTGGCACTGCCGCTTGGCACTGAACCACAAGGTT...CTCGTCCTGTGCCTCATGCTGCTGCCTCTGGGGTTTGGCCCTACCATGTCTAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR GCA 90 bp CTTCTGCTGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGTGGGGATACCGCTGTaGTGGCCACACCTCCTCACA +
Preference number: 4 (lower is better)
Translates to: LLLLLSSVPSSLRSIIPTVGIPL*WPHLLT
Trigger: TGTGAGGAGGTGTGGCCAGCACAGCGGTATCCCCAC...TGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCAGCAGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp CTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCCCTGCTGGCCCAAGGTCCTCCGCTATCTTCTaGTACAGGCTCTGGCTGTTT +
Preference number: 4 (lower is better)
Translates to: LCLAHCALSSQQSPAGPRSSAIF*YRLWLF
Trigger: AAACAGCCAGAGCCTGTACCAGAAGATAGCGGAGGA...CCTTGGGCCAGCAGGGCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp CATGGACCAGCTTTGGCCCACATGGGCTCTCCAACAAACCAGAGAGGAGACTTGTTGGAGACCTGCAGGTaGGAGATGAGCTGTCCCACG +
Preference number: 4 (lower is better)
Translates to: HGPALAHMGSPTNQRGDLLETCR*EMSCPT
Trigger: CGTGGGACAGCTCATCTCCCACCTGCAGGTCTCCAA...CAAGTCTCCTCTCTGGTTTGTTGGAGAGCCCATGTGGGCCAAAGCTGGTCCATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp GGGCCTGTAACTGAGGGGGCATGGGAATATTGTGCCTCAGCAAGGAAGAGAGAGTTGGAGACCTGCAGGTaGGAGATGAGCTGTCCCACG +
Preference number: 4 (lower is better)
Translates to: GPVTEGAWEYCASARKRELETCR*EMSCPT
Trigger: CGTGGGACAGCTCATCTCCCACCTGCAGGTCTCCAA...CTCTCTCTTCCTTGCTGAGGCACAATATTCCCATGCCCCCTCAGTTACAGGCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp ATCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCTGGGCCCTCTGGATCTCCTGGTTaGAGACCTGCAGGTGGGAGA +
Preference number: 4 (lower is better)
Translates to: ITTEFVQVAWAASVSPGPSGSPG*RPAGGR
Trigger: TCTCCCACCTGCAGGTCTCCAACCAGGAGATCCAGA...GGGCCCAGGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp CCGAGCTCCCCAGGCCTCTTGCCCCCATGGTCAGCCTTTCATGGACCAGCTTTGCATGGTTCAGGATTATaGACCGAAGGTGCTTCTGTG +
Preference number: 4 (lower is better)
Translates to: PSSPGLLPPWSAFHGPALHGSGL*TEGASV
Trigger: CACAGAAGCACCTTCGGTCCATAATCCTGAACCATG...CAAAGCTGGTCCATGAAAGGCTGACCATGGGGGCAAGAGGCCTGGGGAGCTCGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp AGGCCCTCAATTAACAACGAGTTGACTGAGTTGGGCACTAGCACCTTCCTGGTCTCCCGGGGACGTTGCTaGGGTCAGACTCTGCGTCGA +
Preference number: 4 (lower is better)
Translates to: RPSINNELTELGTSTFLVSRGRC*GQTLRR
Trigger: TCGACGCAGAGTCTGACCCCAGCAACGTCCCCGGGA...GACCAGGAAGGTGCTAGTGCCCAACTCAGTCAACTCGTTGTTAATTGAGGGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp CCTGAAGACAGTCACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCGCATTTTATAGTCCTTaGTATACATGGCCTTGCGCT +
Preference number: 4 (lower is better)
Translates to: PEDSHSEALTELPRPLAPAFYSP*YTWPCA
Trigger: AGCGCAAGGCCATGTATACCAAGGACTATAAAATGC...GGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGTGACTGTCTTCAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp AGGAAAGAGGCTGTGCGCGTGGGCTTCCAGTGCTGCAGCACCAATGAAGGCCGTGTCTTGTTCAGCAGCTaGATGCAGATCCCGAAGAGT +
Preference number: 4 (lower is better)
Translates to: RKEAVRVGFQCCSTNEGRVLFSS*MQIPKS
Trigger: ACTCTTCGGGATCTGCATCCAGCTGCTGAACAAGAC...ACGGCCTTCATTGGTGCTGCAGCACTGGAAGCCCACGCGCACAGCCTCTTTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CCA 90 bp CCGAGCTCCCCAGGCCTCTTGCCCCCATGGTCAGCCTTTCATGGACCAGCTTTGTCGAAGCTCCACAATTaGTGGGGACTGGAAATCATC +
Preference number: 4 (lower is better)
Translates to: PSSPGLLPPWSAFHGPALSKLHN*WGLEII
Trigger: GATGATTTCCAGTCCCCACCAATTGTGGAGCTTCGA...CAAAGCTGGTCCATGAAAGGCTGACCATGGGGGCAAGAGGCCTGGGGAGCTCGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR TCA 90 bp TCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCCCTGCTGGCCCGGTCTCCATACTAGATaGCTGGGTCCTTTCCATCAG +
Preference number: 4 (lower is better)
Translates to: SSVPSSLRSIIPTEPCWPGLHTR*LGPFHQ
Trigger: CTGATGGAAAGGACCCAGTCATCTAGTATGGAGACC...GGGCCAGCAGGGCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR TCA 90 bp TCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCTGGGCCCCGAAAGTCACGTCAGCTaGGAGCTTAGCCAACTCCTT +
Preference number: 4 (lower is better)
Translates to: SLQSLYKWRGLPVSLLGPESHVS*ELSQLL
Trigger: AAGGAGTTGGCTAAGCTCTCAGCTGACGTGACTTTC...GGGGCCCAGGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR TCA 90 bp ACTAGACATGGTAGGGCCAAACCCCAGAGGCAGCAGCATGAGGCACAGGACGAGGAAAGTCACGTCAGCTaGGAGCTTAGCCAACTCCTT +
Preference number: 4 (lower is better)
Translates to: TRHGRAKPQRQQHEAQDEESHVS*ELSQLL
Trigger: AAGGAGTTGGCTAAGCTCTCAGCTGACGTGACTTTC...CTCGTCCTGTGCCTCATGCTGCTGCCTCTGGGGTTTGGCCCTACCATGTCTAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR TCA 90 bp GACATGGTAGGGCCAAACCCCAGAGGCAGCAGCATGAGGCACAGGACGAGGCTGTTGGACGATTCCCTCTaGTCACATGGTTCAGGATTA +
Preference number: 4 (lower is better)
Translates to: DMVGPNPRGSSMRHRTRLLDDSL*SHGSGL
Trigger: TAATCCTGAACCATGTGATCAGAGGGAATCGTCCAA...CAGCCTCGTCCTGTGCCTCATGCTGCTGCCTCTGGGGTTTGGCCCTACCATGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR TCA 90 bp AGGCCCTCAATTAACAACGAGTTGACTGAGTTGGGCACTAGCACCTTCCTGGTCCACAGAGCATCTTGGTaGGCTCGATGGCACTGCGGC +
Preference number: 4 (lower is better)
Translates to: RPSINNELTELGTSTFLVHRASW*ARWHCG
Trigger: GCCGCAGTGCCATCGAGCTCACCAAGATGCTCTGTG...GACCAGGAAGGTGCTAGTGCCCAACTCAGTCAACTCGTTGTTAATTGAGGGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR TCA 90 bp GGCTCTCCAACAAACCAGAGAGGAGACTTGAAAGGAAAGGGGATGGCTGTCAGTCACAGAGCATCTTGGTaGGCTCGATGGCACTGCGGC +
Preference number: 4 (lower is better)
Translates to: GSPTNQRGDLKGKGMAVSHRASW*ARWHCG
Trigger: GCCGCAGTGCCATCGAGCTCACCAAGATGCTCTGTG...ACTGACAGCCATCCCCTTTCCTTTCAAGTCTCCTCTCTGGTTTGTTGGAGAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR TCA 90 bp ACCACAATCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCTCACAGAGCATCTTGGTaGGCTCGATGGCACTGCGGC +
Preference number: 4 (lower is better)
Translates to: TTITTEFVQVAWAASVSPHRASW*ARWHCG
Trigger: GCCGCAGTGCCATCGAGCTCACCAAGATGCTCTGTG...AGGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGATTGTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR TCA 90 bp GACAGTCACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCATGGTCTACGAAGTTTACTCTTaGACTGATCCAAAGAGTTGG +
Preference number: 4 (lower is better)
Translates to: DSHSEALTELPRPLAPMVYEVYS*TDPKSW
Trigger: CCAACTCTTTGGATCAGTTCAAGAGTAAACTTCGTA...GACCATGGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGTGACTGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR TCA 90 bp AGGCCCTCAATTAACAACGAGTTGACTGAGTTGGGCACTAGCACCTTCCTGGTCTCTGGCTCCACAGCCTaGCCAGGTTGGCTCCAGGTA +
Preference number: 4 (lower is better)
Translates to: RPSINNELTELGTSTFLVSGSTA*PGWLQV
Trigger: TACCTGGAGCCAACCTGGTCAGGCTGTGGAGCCAGA...GACCAGGAAGGTGCTAGTGCCCAACTCAGTCAACTCGTTGTTAATTGAGGGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR GCA 90 bp CTTCTGCTGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGCTGGGGTCAGACTCTaGGTCGAAGGCAATCCTCCT +
Preference number: 4 (lower is better)
Translates to: LLLLLSSVPSSLRSIIPTAGVRL*VEGNPP
Trigger: AGGAGGATTGCCTTCGACGCAGAGTCTGACCCCAGC...TGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCAGCAGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR GCA 90 bp AGGCCCTCAATTAACAACGAGTTGACTGAGTTGGGCACTAGCACCTTCCTGGTCGGGAGCTCCCCGACCTaGAGGATCTCACAGAGCATC +
Preference number: 4 (lower is better)
Translates to: RPSINNELTELGTSTFLVGSSPT*RISQSI
Trigger: GATGCTCTGTGAGATCCTGCAGGTCGGGGAGCTCCC...GACCAGGAAGGTGCTAGTGCCCAACTCAGTCAACTCGTTGTTAATTGAGGGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR GCA 90 bp ATCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCTGGGCCCAACCTTGTGGTTCAGTaGCAAGCGGCAGTGCCAGAA +
Preference number: 4 (lower is better)
Translates to: ITTEFVQVAWAASVSPGPNLVVQ*QAAVPE
Trigger: TTCTGGCACTGCCGCTTGGCACTGAACCACAAGGTT...GGGCCCAGGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR GCA 90 bp TCATTCCTAAAGCCTAAGAGAGCAGGACTCAGGCTGGAGGCCTCTGCCTGGCCAGCAGCTTCATCTCCATaGTCAGCAGCGTGTCCAAGT +
Preference number: 4 (lower is better)
Translates to: SFLKPKRAGLRLEASAWPAASSP*SAACPS
Trigger: ACTTGGACACGCTGCTGAGCATGGAGATGAAGCTGC...TGGCCAGGCAGAGGCCTCCAGCCTGAGTCCTGCTCTCTTAGGCTTTAGGAATGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CCA 90 bp TACCACAATCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCAGTGGGACAGGAGCTTaGTCCCACTCTCCACGAGCC +
Preference number: 4 (lower is better)
Translates to: YHNHYRVCTSGVGCQCLSSGTGA*SHSPRA
Trigger: GGCTCGTGGAGAGTGGGACCAAGCTCCTGTCCCACT...GGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGATTGTGGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp ACCACAATCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCTAGTGGGACAGGAGCTTaGTCCCACTCTCCACGAGCC +
Preference number: 4 (lower is better)
Translates to: TTITTEFVQVAWAASVSPSGTGA*SHSPRA
Trigger: GGCTCGTGGAGAGTGGGACCAAGCTCCTGTCCCACT...AGGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGATTGTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp AGACCTATTAAGCAGGAGCTCAAGGCCTGTTCTTGCCTGAGCCACCTGAAGACAATGGCCAGGGACCGCTaGAGGATGGACACATCGACC +
Preference number: 4 (lower is better)
Translates to: RPIKQELKACSCLSHLKTMARDR*RMDTST
Trigger: GGTCGATGTGTCCATCCTCCAGCGGTCCCTGGCCAT...TGTCTTCAGGTGGCTCAGGCAAGAACAGGCCTTGAGCTCCTGCTTAATAGGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp ACCACAATCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCTATGGCCAGGGACCGCTaGAGGATGGACACATCGACC +
Preference number: 4 (lower is better)
Translates to: TTITTEFVQVAWAASVSPMARDR*RMDTST
Trigger: GGTCGATGTGTCCATCCTCCAGCGGTCCCTGGCCAT...AGGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGATTGTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp AGGAAAGAGGCTGTGCGCGTGGGCTTCCAGTGCTGCAGCACCAATGAAGGCCGTTTCTGGTACAGGCTCTaGCTGTTTAGTACCATGCTC +
Preference number: 4 (lower is better)
Translates to: RKEAVRVGFQCCSTNEGRFWYRL*LFSTML
Trigger: GAGCATGGTACTAAACAGCCAGAGCCTGTACCAGAA...ACGGCCTTCATTGGTGCTGCAGCACTGGAAGCCCACGCGCACAGCCTCTTTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp CTTCTGCTGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACATTGGAGACCTGCAGGTaGGAGATGAGCTGTCCCACG +
Preference number: 4 (lower is better)
Translates to: LLLLLSSVPSSLRSIIPTLETCR*EMSCPT
Trigger: CGTGGGACAGCTCATCTCCCACCTGCAGGTCTCCAA...TGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCAGCAGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp AGGAAAGAGGCTGTGCGCGTGGGCTTCCAGTGCTGCAGCACCAATGAAGGCCGTCATGGTTCAGGATTATaGACCGAAGGTGCTTCTGTG +
Preference number: 4 (lower is better)
Translates to: RKEAVRVGFQCCSTNEGRHGSGL*TEGASV
Trigger: CACAGAAGCACCTTCGGTCCATAATCCTGAACCATG...ACGGCCTTCATTGGTGCTGCAGCACTGGAAGCCCACGCGCACAGCCTCTTTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp GACATGGTAGGGCCAAACCCCAGAGGCAGCAGCATGAGGCACAGGACGAGGCTGTTCCCTCTGATCACATaGTTCAGGATTATGGACCGA +
Preference number: 4 (lower is better)
Translates to: DMVGPNPRGSSMRHRTRLFPLIT*FRIMDR
Trigger: TCGGTCCATAATCCTGAACCATGTGATCAGAGGGAA...CAGCCTCGTCCTGTGCCTCATGCTGCTGCCTCTGGGGTTTGGCCCTACCATGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp CTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCCCTGCTGGCCCAAGGTCTGAGCCTGGTCATTaGGATCCATCTTGGTCATCA +
Preference number: 4 (lower is better)
Translates to: LCLAHCALSSQQSPAGPRSEPGH*DPSWSS
Trigger: TGATGACCAAGATGGATCCCAATGACCAGGCTCAGA...CCTTGGGCCAGCAGGGCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp GGCACAAACCACAGCGCCAGGAAGGGGAGAAAGGGAAGGCAACACCCCTGTCTGTCTGAGCCTGGTCATTaGGATCCATCTTGGTCATCA +
Preference number: 4 (lower is better)
Translates to: GTNHSARKGRKGRQHPCLSEPGH*DPSWSS
Trigger: TGATGACCAAGATGGATCCCAATGACCAGGCTCAGA...CAGACAGGGGTGTTGCCTTCCCTTTCTCCCCTTCCTGGCGCTGTGGTTTGTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp ACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCATGGTCAGCCTTTGCATTTTATAGTCCTTaGTATACATGGCCTTGCGCT +
Preference number: 4 (lower is better)
Translates to: TPRLSPSSPGLLPPWSAFAFYSP*YTWPCA
Trigger: AGCGCAAGGCCATGTATACCAAGGACTATAAAATGC...AAAGGCTGACCATGGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp GGCACAAACCACAGCGCCAGGAAGGGGAGAAAGGGAAGGCAACACCCCTGTCTGGGTGAAGTCCAAGGCTaGGTTGATATGGTTGGTGAA +
Preference number: 4 (lower is better)
Translates to: GTNHSARKGRKGRQHPCLGEVQG*VDMVGE
Trigger: TTCACCAACCATATCAACCCAGCCTTGGACTTCACC...CAGACAGGGGTGTTGCCTTCCCTTTCTCCCCTTCCTGGCGCTGTGGTTTGTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp CTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCCCTGCTGGCCCAAGGAAGCTCCACAATTGGTaGGGACTGGAAATCATCCTG +
Preference number: 4 (lower is better)
Translates to: LCLAHCALSSQQSPAGPRKLHNW*GLEIIL
Trigger: CAGGATGATTTCCAGTCCCCACCAATTGTGGAGCTT...CCTTGGGCCAGCAGGGCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp CATCCCAACAGAGCCCTGCTGGCCCAAGGTCCTCTCCTCTTGACCCCAAGTGCTTCGAAGCTCCACAATTaGTGGGGACTGGAAATCATC +
Preference number: 4 (lower is better)
Translates to: HPNRALLAQGPLLLTPSASKLHN*WGLEII
Trigger: GATGATTTCCAGTCCCCACCAATTGTGGAGCTTCGA...AGCACTTGGGGTCAAGAGGAGAGGACCTTGGGCCAGCAGGGCTCTGTTGGGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp AGGAAAGAGGCTGTGCGCGTGGGCTTCCAGTGCTGCAGCACCAATGAAGGCCGTTCGAAGCTCCACAATTaGTGGGGACTGGAAATCATC +
Preference number: 4 (lower is better)
Translates to: RKEAVRVGFQCCSTNEGRSKLHN*WGLEII
Trigger: GATGATTTCCAGTCCCCACCAATTGTGGAGCTTCGA...ACGGCCTTCATTGGTGCTGCAGCACTGGAAGCCCACGCGCACAGCCTCTTTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CCA 90 bp TCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCTGGGCCCCTCTTGGTTAGCTCGCTaGACATATCCTTCCCCAGGA +
Preference number: 4 (lower is better)
Translates to: SLQSLYKWRGLPVSLLGPSWLAR*TYPSPG
Trigger: TCCTGGGGAAGGATATGTCCAGCGAGCTAACCAAGA...GGGGCCCAGGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR CAA 72 bp CTGCAGGCAACATGCGGGGTGCGGAACATGTCTTCTTaGAAAGGCACAAGTACTCGAGCTGTTCCCTGGCTG +
Preference number: 4 (lower is better)
Translates to: LQATCGVRNMSS*KGTSTRAVPWL
Trigger: CAGCCAGGGAACAGCTCGAGTACTTGTGCCTTTCAAAGAAGACATGTTCCGCACCCCGCATGTTGCCTGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
CDS-3UTR TCA 90 bp GGCACAAACCACAGCGCCAGGAAGGGGAGAAAGGGAAGGCAACACCCCTGTCTGTTGGACGATTCCCTCTaGTCACATGGTTCAGGATTA +
Preference number: 4 (lower is better)
Translates to: GTNHSARKGRKGRQHPCLLDDSL*SHGSGL
Trigger: TAATCCTGAACCATGTGATCAGAGGGAATCGTCCAA...CAGACAGGGGTGTTGCCTTCCCTTTCTCCCCTTCCTGGCGCTGTGGTTTGTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR TCA 90 bp TTCTGCTGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGCTAATCCCAGCCCTCTaGAGGCAGAGGAAGACAGAC +
Preference number: 4 (lower is better)
Translates to: FCCCSLLCLAHCALSSQQLIPAL*RQRKTD
Trigger: GTCTGTCTTCCTCTGCCTTCAGAGGGCTGGGATTAG...CTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCAGCAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR TCA 90 bp TACCACAATCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCTCCCCAGGAGAGCGCTaGGTCCATCAATCCAGATGC +
Preference number: 4 (lower is better)
Translates to: YHNHYRVCTSGVGCQCLSSPGER*VHQSRC
Trigger: GCATCTGGATTGATGGACTCAGCGCTCTCCTGGGGA...GGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGATTGTGGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR TCA 90 bp TACCACAATCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCGGCGCCTCGGGGATCTaGATGTTCTCCAAGTCCAGA +
Preference number: 4 (lower is better)
Translates to: YHNHYRVCTSGVGCQCLSGASGI*MFSKSR
Trigger: TCTGGACTTGGAGAACATTCAGATCCCCGAGGCGCC...GGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGATTGTGGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR GCA 90 bp ACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCATGGTCAGCCTTTACGTACCCTGCAATCTaGTTAATAAAGGTGACTGAA +
Preference number: 4 (lower is better)
Translates to: TPRLSPSSPGLLPPWSAFTYPAI*LIKVTE
Trigger: TTCAGTCACCTTTATTAAGCAGATTGCAGGGTACGT...AAAGGCTGACCATGGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR GCA 90 bp TGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCCCTGGCTGTTTAGTACCATaGTCTCTAGGATGGCCAGGG +
Preference number: 4 (lower is better)
Translates to: CCSLLCLAHCALSSQQSPGCLVP*SLGWPG
Trigger: CCCTGGCCATCCTAGAGAGCATGGTACTAAACAGCC...AGGGCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR GCA 90 bp CTTCTGCTGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACATCCTGGTTGGAGACCTaGAGGTGGGAGATGAGCTGT +
Preference number: 4 (lower is better)
Translates to: LLLLLSSVPSSLRSIIPTSWLET*RWEMSC
Trigger: ACAGCTCATCTCCCACCTGCAGGTCTCCAACCAGGA...TGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCAGCAGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR GCA 90 bp CATGCACTTTCTATGCCTTCTGAAAGCGCCTGTCCTCACCCCCTTCTGACTGAGTCCTGGTTGGAGACCTaGAGGTGGGAGATGAGCTGT +
Preference number: 4 (lower is better)
Translates to: HALSMPSESACPHPLLTESWLET*RWEMSC
Trigger: ACAGCTCATCTCCCACCTGCAGGTCTCCAACCAGGA...CTCAGTCAGAAGGGGGTGAGGACAGGCGCTTTCAGAAGGCATAGAAAGTGCATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
CDS-3UTR GCA 90 bp TGCTGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCCCGAAGGTGCTTCTGTaGAAAGGCATTGGCCATGTC +
Preference number: 4 (lower is better)
Translates to: CCCSLLCLAHCALSSQQSPKVLL*KGIGHV
Trigger: GACATGGCCAATGCCTTTGCACAGAAGCACCTTCGG...GCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR GCA 90 bp CTGCAAGGACAAGAGAGACGGGTGTCTCTAGAGACTAGACATGGTAGGGCCAAAGCTGGGGTCAGACTCTaGGTCGAAGGCAATCCTCCT +
Preference number: 4 (lower is better)
Translates to: LQGQERRVSLETRHGRAKAGVRL*VEGNPP
Trigger: AGGAGGATTGCCTTCGACGCAGAGTCTGACCCCAGC...TTTGGCCCTACCATGTCTAGTCTCTAGAGACACCCGTCTCTCTTGTCCTTGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR GCA 90 bp AGACCTATTAAGCAGGAGCTCAAGGCCTGTTCTTGCCTGAGCCACCTGAAGACAGCTGGGGTCAGACTCTaGGTCGAAGGCAATCCTCCT +
Preference number: 4 (lower is better)
Translates to: RPIKQELKACSCLSHLKTAGVRL*VEGNPP
Trigger: AGGAGGATTGCCTTCGACGCAGAGTCTGACCCCAGC...TGTCTTCAGGTGGCTCAGGCAAGAACAGGCCTTGAGCTCCTGCTTAATAGGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR GCA 90 bp TGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCCCTCTGTGCCAGGCCAGCTaGTCTAAGGCACAAAGTGAA +
Preference number: 4 (lower is better)
Translates to: CCSLLCLAHCALSSQQSPLCQAS*SKAQSE
Trigger: TTCACTTTGTGCCTTAGAGCAGCTGGCCTGGCACAG...AGGGCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp AGACCTATTAAGCAGGAGCTCAAGGCCTGTTCTTGCCTGAGCCACCTGAAGACATGGACACATCGACCATaGGCTGGCTCACGTACCCTG +
Preference number: 4 (lower is better)
Translates to: RPIKQELKACSCLSHLKTWTHRP*AGSRTL
Trigger: CAGGGTACGTGAGCCAGCCCATGGTCGATGTGTCCA...TGTCTTCAGGTGGCTCAGGCAAGAACAGGCCTTGAGCTCCTGCTTAATAGGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp TCATTCCTAAAGCCTAAGAGAGCAGGACTCAGGCTGGAGGCCTCTGCCTGGCCATCCTCCGCTATCTTCTaGTACAGGCTCTGGCTGTTT +
Preference number: 4 (lower is better)
Translates to: SFLKPKRAGLRLEASAWPSSAIF*YRLWLF
Trigger: AAACAGCCAGAGCCTGTACCAGAAGATAGCGGAGGA...TGGCCAGGCAGAGGCCTCCAGCCTGAGTCCTGCTCTCTTAGGCTTTAGGAATGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp CTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCCCTGCTGGCCCAAGGTTCCCTCTGATCACATaGTTCAGGATTATGGACCGA +
Preference number: 4 (lower is better)
Translates to: LCLAHCALSSQQSPAGPRFPLIT*FRIMDR
Trigger: TCGGTCCATAATCCTGAACCATGTGATCAGAGGGAA...CCTTGGGCCAGCAGGGCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp CCGAGCTCCCCAGGCCTCTTGCCCCCATGGTCAGCCTTTCATGGACCAGCTTTGCATCTCTGTTTTGATTaGACGATTCCCTCTGATCAC +
Preference number: 4 (lower is better)
Translates to: PSSPGLLPPWSAFHGPALHLCFD*TIPSDH
Trigger: GTGATCAGAGGGAATCGTCCAATCAAAACAGAGATG...CAAAGCTGGTCCATGAAAGGCTGACCATGGGGGCAAGAGGCCTGGGGAGCTCGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp ACTAGACATGGTAGGGCCAAACCCCAGAGGCAGCAGCATGAGGCACAGGACGAGTCTGAGCCTGGTCATTaGGATCCATCTTGGTCATCA +
Preference number: 4 (lower is better)
Translates to: TRHGRAKPQRQQHEAQDESEPGH*DPSWSS
Trigger: TGATGACCAAGATGGATCCCAATGACCAGGCTCAGA...CTCGTCCTGTGCCTCATGCTGCTGCCTCTGGGGTTTGGCCCTACCATGTCTAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp ATCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCTGGGCCCCTCATCCTCTCAGACTaGCGCAACCGCAGAATTTCT +
Preference number: 4 (lower is better)
Translates to: ITTEFVQVAWAASVSPGPLILSD*RNRRIS
Trigger: AGAAATTCTGCGGTTGCGCCAGTCTGAGAGGATGAG...GGGCCCAGGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR TCA 90 bp TGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCCCTAATGTCACCTCCCCTTaGGGGTTGTCATCCAAGTCA +
Preference number: 4 (lower is better)
Translates to: CCSLLCLAHCALSSQQSPNVTSP*GLSSKS
Trigger: TGACTTGGATGACAACCCTCAAGGGGAGGTGACATT...AGGGCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR TCA 90 bp GAGGGGCCTGTAACTGAGGGGGCATGGGAATATTGTGCCTCAGCAAGGAAGAGAAATGTCACCTCCCCTTaGGGGTTGTCATCCAAGTCA +
Preference number: 4 (lower is better)
Translates to: EGPVTEGAWEYCASARKRNVTSP*GLSSKS
Trigger: TGACTTGGATGACAACCCTCAAGGGGAGGTGACATT...TCTCTTCCTTGCTGAGGCACAATATTCCCATGCCCCCTCAGTTACAGGCCCCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR TCA 90 bp CATCCCAACAGAGCCCTGCTGGCCCAAGGTCCTCTCCTCTTGACCCCAAGTGCTACTTGTTGGGAGCAATaGAATTCAGTGTCTCATCAG +
Preference number: 4 (lower is better)
Translates to: HPNRALLAQGPLLLTPSATCWEQ*NSVSHQ
Trigger: CTGATGAGACACTGAATTTCATTGCTCCCAACAAGT...AGCACTTGGGGTCAAGAGGAGAGGACCTTGGGCCAGCAGGGCTCTGTTGGGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR TCA 90 bp AGGAAAGAGGCTGTGCGCGTGGGCTTCCAGTGCTGCAGCACCAATGAAGGCCGTACTTGTTGGGAGCAATaGAATTCAGTGTCTCATCAG +
Preference number: 4 (lower is better)
Translates to: RKEAVRVGFQCCSTNEGRTCWEQ*NSVSHQ
Trigger: CTGATGAGACACTGAATTTCATTGCTCCCAACAAGT...ACGGCCTTCATTGGTGCTGCAGCACTGGAAGCCCACGCGCACAGCCTCTTTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR GCA 90 bp AGACCTATTAAGCAGGAGCTCAAGGCCTGTTCTTGCCTGAGCCACCTGAAGACACTCCTTGATGATGGATaGCAGCGGCCGTTTCTGGTC +
Preference number: 4 (lower is better)
Translates to: RPIKQELKACSCLSHLKTLLDDG*QRPFLV
Trigger: GACCAGAAACGGCCGCTGGCATCCATCATCAAGGAG...TGTCTTCAGGTGGCTCAGGCAAGAACAGGCCTTGAGCTCCTGCTTAATAGGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR GCA 90 bp TACCACAATCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCCTCCTTGATGATGGATaGCAGCGGCCGTTTCTGGTC +
Preference number: 4 (lower is better)
Translates to: YHNHYRVCTSGVGCQCLSLLDDG*QRPFLV
Trigger: GACCAGAAACGGCCGCTGGCATCCATCATCAAGGAG...GGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGATTGTGGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR GCA 90 bp CCGAGCTCCCCAGGCCTCTTGCCCCCATGGTCAGCCTTTCATGGACCAGCTTTGACGTACCCTGCAATCTaGTTAATAAAGGTGACTGAA +
Preference number: 4 (lower is better)
Translates to: PSSPGLLPPWSAFHGPALTYPAI*LIKVTE
Trigger: TTCAGTCACCTTTATTAAGCAGATTGCAGGGTACGT...CAAAGCTGGTCCATGAAAGGCTGACCATGGGGGCAAGAGGCCTGGGGAGCTCGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR GCA 90 bp CATGCACTTTCTATGCCTTCTGAAAGCGCCTGTCCTCACCCCCTTCTGACTGAGGGCTGTTTAGTACCATaGTCTCTAGGATGGCCAGGG +
Preference number: 4 (lower is better)
Translates to: HALSMPSESACPHPLLTEGCLVP*SLGWPG
Trigger: CCCTGGCCATCCTAGAGAGCATGGTACTAAACAGCC...CTCAGTCAGAAGGGGGTGAGGACAGGCGCTTTCAGAAGGCATAGAAAGTGCATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
CDS-3UTR GCA 90 bp TCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCTGGGCCCCATTATGGACCGAAGGTaGTTCTGTGCAAAGGCATTG +
Preference number: 4 (lower is better)
Translates to: SLQSLYKWRGLPVSLLGPIMDRR*FCAKAL
Trigger: CAATGCCTTTGCACAGAAGCACCTTCGGTCCATAAT...GGGGCCCAGGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR GCA 90 bp ACTAGACATGGTAGGGCCAAACCCCAGAGGCAGCAGCATGAGGCACAGGACGAGATTATGGACCGAAGGTaGTTCTGTGCAAAGGCATTG +
Preference number: 4 (lower is better)
Translates to: TRHGRAKPQRQQHEAQDEIMDRR*FCAKAL
Trigger: CAATGCCTTTGCACAGAAGCACCTTCGGTCCATAAT...CTCGTCCTGTGCCTCATGCTGCTGCCTCTGGGGTTTGGCCCTACCATGTCTAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR GCA 90 bp CATCCCAACAGAGCCCTGCTGGCCCAAGGTCCTCTCCTCTTGACCCCAAGTGCTTGCTCTCGGACAACTTaGATAACCTTGTTGAAATCC +
Preference number: 4 (lower is better)
Translates to: HPNRALLAQGPLLLTPSACSRTT*ITLLKS
Trigger: GGATTTCAACAAGGTTATGCAAGTTGTCCGAGAGCA...AGCACTTGGGGTCAAGAGGAGAGGACCTTGGGCCAGCAGGGCTCTGTTGGGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR GCA 90 bp AGGAAAGAGGCTGTGCGCGTGGGCTTCCAGTGCTGCAGCACCAATGAAGGCCGTTGCTCTCGGACAACTTaGATAACCTTGTTGAAATCC +
Preference number: 4 (lower is better)
Translates to: RKEAVRVGFQCCSTNEGRCSRTT*ITLLKS
Trigger: GGATTTCAACAAGGTTATGCAAGTTGTCCGAGAGCA...ACGGCCTTCATTGGTGCTGCAGCACTGGAAGCCCACGCGCACAGCCTCTTTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR GCA 90 bp AGGCCCTCAATTAACAACGAGTTGACTGAGTTGGGCACTAGCACCTTCCTGGTCCGGTTGAGGCGCTGTTaGTTGATCAGCTCCAGGATC +
Preference number: 4 (lower is better)
Translates to: RPSINNELTELGTSTFLVRLRRC*LISSRI
Trigger: GATCCTGGAGCTGATCAAGCAACAGCGCCTCAACCG...GACCAGGAAGGTGCTAGTGCCCAACTCAGTCAACTCGTTGTTAATTGAGGGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp TGCTGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCTCCTCCGCTATCTTCTaGTACAGGCTCTGGCTGTTT +
Preference number: 4 (lower is better)
Translates to: CCCSLLCLAHCALSSQQSSSAIF*YRLWLF
Trigger: AAACAGCCAGAGCCTGTACCAGAAGATAGCGGAGGA...GCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp GGGCCTGTAACTGAGGGGGCATGGGAATATTGTGCCTCAGCAAGGAAGAGAGAGTCCTCCGCTATCTTCTaGTACAGGCTCTGGCTGTTT +
Preference number: 4 (lower is better)
Translates to: GPVTEGAWEYCASARKRESSAIF*YRLWLF
Trigger: AAACAGCCAGAGCCTGTACCAGAAGATAGCGGAGGA...CTCTCTCTTCCTTGCTGAGGCACAATATTCCCATGCCCCCTCAGTTACAGGCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp AGGCCCTCAATTAACAACGAGTTGACTGAGTTGGGCACTAGCACCTTCCTGGTCTCTGGATCTCCTGGTTaGAGACCTGCAGGTGGGAGA +
Preference number: 4 (lower is better)
Translates to: RPSINNELTELGTSTFLVSGSPG*RPAGGR
Trigger: TCTCCCACCTGCAGGTCTCCAACCAGGAGATCCAGA...GACCAGGAAGGTGCTAGTGCCCAACTCAGTCAACTCGTTGTTAATTGAGGGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp TCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCTGGGCCCCTTCCCTCTGATCACATaGTTCAGGATTATGGACCGA +
Preference number: 4 (lower is better)
Translates to: SLQSLYKWRGLPVSLLGPFPLIT*FRIMDR
Trigger: TCGGTCCATAATCCTGAACCATGTGATCAGAGGGAA...GGGGCCCAGGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp GGCTCTCCAACAAACCAGAGAGGAGACTTGAAAGGAAAGGGGATGGCTGTCAGTATTCCAGGAGGAGTCTaGGTGAAGTCCAAGGCTGGG +
Preference number: 4 (lower is better)
Translates to: GSPTNQRGDLKGKGMAVSIPGGV*VKSKAG
Trigger: CCCAGCCTTGGACTTCACCCAGACTCCTCCTGGAAT...ACTGACAGCCATCCCCTTTCCTTTCAAGTCTCCTCTCTGGTTTGTTGGAGAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp TGCTGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCGTCTTGTTCAGCAGCTaGATGCAGATCCCGAAGAGT +
Preference number: 4 (lower is better)
Translates to: CCCSLLCLAHCALSSQQSVLFSS*MQIPKS
Trigger: ACTCTTCGGGATCTGCATCCAGCTGCTGAACAAGAC...GCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp CACACTGAAATGAAGGCTGTCAGGCCGCTCCTCACCCTTGGGACAGGGAATAAGGTCTTGTTCAGCAGCTaGATGCAGATCCCGAAGAGT +
Preference number: 4 (lower is better)
Translates to: HTEMKAVRPLLTLGTGNKVLFSS*MQIPKS
Trigger: ACTCTTCGGGATCTGCATCCAGCTGCTGAACAAGAC...CTTATTCCCTGTCCCAAGGGTGAGGAGCGGCCTGACAGCCTTCATTTCAGTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp AAGCAGGAGCTCAAGGCCTGTTCTTGCCTGAGCCACCTGAAGACAGTCACTCCGAAGCTCCACAATTGGTaGGGACTGGAAATCATCCTG +
Preference number: 4 (lower is better)
Translates to: KQELKACSCLSHLKTVTPKLHNW*GLEIIL
Trigger: CAGGATGATTTCCAGTCCCCACCAATTGTGGAGCTT...CGGAGTGACTGTCTTCAGGTGGCTCAGGCAAGAACAGGCCTTGAGCTCCTGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR CAA 72 bp ATGGGTTCTTGGGGGTGTACAGTATGCCTTTCCACGTaGTACCCAGCACGACTGAGCAGAAAACGCTCTGTC +
Preference number: 4 (lower is better)
Translates to: MGSWGCTVCLST*YPARLSRKRSV
Trigger: GACAGAGCGTTTTCTGCTCAGTCGTGCTGGGTACAACGTGGAAAGGCATACTGTACACCCCCAAGAACCCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
3UTR CAA 72 bp CAAGGTCTTGGCTTCGTTCAGCCCTCAAAGCCTGCGTaGCATGCACTTTCTATGCCTTCTGAAAGCGCCTGT +
Preference number: 4 (lower is better)
Translates to: QGLGFVQPSKPA*HALSMPSESAC
Trigger: ACAGGCGCTTTCAGAAGGCATAGAAAGTGCATGCAACGCAGGCTTTGAGGGCTGAACGAAGCCAAGACCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
CDS-3UTR TCA 90 bp CTTCTGCTGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAAAGTCACGTCAGCTaGGAGCTTAGCCAACTCCTT +
Preference number: 4 (lower is better)
Translates to: LLLLLSSVPSSLRSIIPTESHVS*ELSQLL
Trigger: AAGGAGTTGGCTAAGCTCTCAGCTGACGTGACTTTC...TGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCAGCAGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR TCA 90 bp GACATGGTAGGGCCAAACCCCAGAGGCAGCAGCATGAGGCACAGGACGAGGCTGAGTTTACTCTTGAACTaGTCCAAAGAGTTGGGTTTA +
Preference number: 4 (lower is better)
Translates to: DMVGPNPRGSSMRHRTRLSLLLN*SKELGL
Trigger: TAAACCCAACTCTTTGGATCAGTTCAAGAGTAAACT...CAGCCTCGTCCTGTGCCTCATGCTGCTGCCTCTGGGGTTTGGCCCTACCATGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR TCA 90 bp CATCCCAACAGAGCCCTGCTGGCCCAAGGTCCTCTCCTCTTGACCCCAAGTGCTTACGAAGTTTACTCTTaGACTGATCCAAAGAGTTGG +
Preference number: 4 (lower is better)
Translates to: HPNRALLAQGPLLLTPSAYEVYS*TDPKSW
Trigger: CCAACTCTTTGGATCAGTTCAAGAGTAAACTTCGTA...AGCACTTGGGGTCAAGAGGAGAGGACCTTGGGCCAGCAGGGCTCTGTTGGGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR GCA 90 bp AGGAAAGAGGCTGTGCGCGTGGGCTTCCAGTGCTGCAGCACCAATGAAGGCCGTACGTACCCTGCAATCTaGTTAATAAAGGTGACTGAA +
Preference number: 4 (lower is better)
Translates to: RKEAVRVGFQCCSTNEGRTYPAI*LIKVTE
Trigger: TTCAGTCACCTTTATTAAGCAGATTGCAGGGTACGT...ACGGCCTTCATTGGTGCTGCAGCACTGGAAGCCCACGCGCACAGCCTCTTTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR GCA 90 bp TCATTCCTAAAGCCTAAGAGAGCAGGACTCAGGCTGGAGGCCTCTGCCTGGCCACTGGCTCACGTACCCTaGAATCTGCTTAATAAAGGT +
Preference number: 4 (lower is better)
Translates to: SFLKPKRAGLRLEASAWPLAHVP*NLLNKG
Trigger: ACCTTTATTAAGCAGATTGCAGGGTACGTGAGCCAG...TGGCCAGGCAGAGGCCTCCAGCCTGAGTCCTGCTCTCTTAGGCTTTAGGAATGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR GCA 90 bp ACCACAATCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCTGGCTGTTTAGTACCATaGTCTCTAGGATGGCCAGGG +
Preference number: 4 (lower is better)
Translates to: TTITTEFVQVAWAASVSPGCLVP*SLGWPG
Trigger: CCCTGGCCATCCTAGAGAGCATGGTACTAAACAGCC...AGGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGATTGTGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR GCA 90 bp CTGCAAGGACAAGAGAGACGGGTGTCTCTAGAGACTAGACATGGTAGGGCCAAAGGCTGTTTAGTACCATaGTCTCTAGGATGGCCAGGG +
Preference number: 4 (lower is better)
Translates to: LQGQERRVSLETRHGRAKGCLVP*SLGWPG
Trigger: CCCTGGCCATCCTAGAGAGCATGGTACTAAACAGCC...TTTGGCCCTACCATGTCTAGTCTCTAGAGACACCCGTCTCTCTTGTCCTTGCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR GCA 90 bp TACCACAATCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCCCGAAGGTGCTTCTGTaGAAAGGCATTGGCCATGTC +
Preference number: 4 (lower is better)
Translates to: YHNHYRVCTSGVGCQCLSPKVLL*KGIGHV
Trigger: GACATGGCCAATGCCTTTGCACAGAAGCACCTTCGG...GGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGATTGTGGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR GCA 90 bp AGGCCCTCAATTAACAACGAGTTGACTGAGTTGGGCACTAGCACCTTCCTGGTCAACCTTGTGGTTCAGTaGCAAGCGGCAGTGCCAGAA +
Preference number: 4 (lower is better)
Translates to: RPSINNELTELGTSTFLVNLVVQ*QAAVPE
Trigger: TTCTGGCACTGCCGCTTGGCACTGAACCACAAGGTT...GACCAGGAAGGTGCTAGTGCCCAACTCAGTCAACTCGTTGTTAATTGAGGGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR GCA 90 bp GGCTCTCCAACAAACCAGAGAGGAGACTTGAAAGGAAAGGGGATGGCTGTCAGTAACCTTGTGGTTCAGTaGCAAGCGGCAGTGCCAGAA +
Preference number: 4 (lower is better)
Translates to: GSPTNQRGDLKGKGMAVSNLVVQ*QAAVPE
Trigger: TTCTGGCACTGCCGCTTGGCACTGAACCACAAGGTT...ACTGACAGCCATCCCCTTTCCTTTCAAGTCTCCTCTCTGGTTTGTTGGAGAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR GCA 90 bp AGACCTATTAAGCAGGAGCTCAAGGCCTGTTCTTGCCTGAGCCACCTGAAGACAAACCTTGTGGTTCAGTaGCAAGCGGCAGTGCCAGAA +
Preference number: 4 (lower is better)
Translates to: RPIKQELKACSCLSHLKTNLVVQ*QAAVPE
Trigger: TTCTGGCACTGCCGCTTGGCACTGAACCACAAGGTT...TGTCTTCAGGTGGCTCAGGCAAGAACAGGCCTTGAGCTCCTGCTTAATAGGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR GCA 90 bp AGGCCCTCAATTAACAACGAGTTGACTGAGTTGGGCACTAGCACCTTCCTGGTCCTGTGCCAGGCCAGCTaGTCTAAGGCACAAAGTGAA +
Preference number: 4 (lower is better)
Translates to: RPSINNELTELGTSTFLVLCQAS*SKAQSE
Trigger: TTCACTTTGTGCCTTAGAGCAGCTGGCCTGGCACAG...GACCAGGAAGGTGCTAGTGCCCAACTCAGTCAACTCGTTGTTAATTGAGGGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR GCA 90 bp CTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCCCTGCTGGCCCAAGGCCTGGGAAAAGTAACTaGGAGATTACAAAGAGGAAA +
Preference number: 4 (lower is better)
Translates to: LCLAHCALSSQQSPAGPRPGKSN*EITKRK
Trigger: TTTCCTCTTTGTAATCTCGCAGTTACTTTTCCCAGG...CCTTGGGCCAGCAGGGCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR GCA 90 bp ACCACAATCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCTGCAGCTTCATCTCCATaGTCAGCAGCGTGTCCAAGT +
Preference number: 4 (lower is better)
Translates to: TTITTEFVQVAWAASVSPAASSP*SAACPS
Trigger: ACTTGGACACGCTGCTGAGCATGGAGATGAAGCTGC...AGGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGATTGTGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR GCA 90 bp GGCTCTCCAACAAACCAGAGAGGAGACTTGAAAGGAAAGGGGATGGCTGTCAGTGCAGCTTCATCTCCATaGTCAGCAGCGTGTCCAAGT +
Preference number: 4 (lower is better)
Translates to: GSPTNQRGDLKGKGMAVSAASSP*SAACPS
Trigger: ACTTGGACACGCTGCTGAGCATGGAGATGAAGCTGC...ACTGACAGCCATCCCCTTTCCTTTCAAGTCTCCTCTCTGGTTTGTTGGAGAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CCA 90 bp ATTAGACCTTGTCTCAGAAAAACAAAACTTAAGGCAGAGGCTCCCAGAATGCACGTCCTTTCCATCAGCTaGCGTGCAGCCCGGGACGGG +
Preference number: 4 (lower is better)
Translates to: IRPCLRKTKLKAEAPRMHVLSIS*RAARDG
Trigger: CCCGTCCCGGGCTGCACGCCAGCTGATGGAAAGGAC...GTGCATTCTGGGAGCCTCTGCCTTAAGTTTTGTTTTTCTGAGACAAGGTCTAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp TTTGAAAGGCACAAGTACTCGAGCTGTTCCCTGGCTGTGTCCCTGGCAGGGGAATTCTGGTACAGGCTCTaGCTGTTTAGTACCATGCTC +
Preference number: 4 (lower is better)
Translates to: FERHKYSSCSLAVSLAGEFWYRL*LFSTML
Trigger: GAGCATGGTACTAAACAGCCAGAGCCTGTACCAGAA...TTCCCCTGCCAGGGACACAGCCAGGGAACAGCTCGAGTACTTGTGCCTTTCAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp CATGGACCAGCTTTGGCCCACATGGGCTCTCCAACAAACCAGAGAGGAGACTTGTCTGTGCAAAGGCATTaGCCATGTCCTGTCTCTTGT +
Preference number: 4 (lower is better)
Translates to: HGPALAHMGSPTNQRGDLSVQRH*PCPVSC
Trigger: ACAAGAGACAGGACATGGCCAATGCCTTTGCACAGA...CAAGTCTCCTCTCTGGTTTGTTGGAGAGCCCATGTGGGCCAAAGCTGGTCCATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp GGGCCTGTAACTGAGGGGGCATGGGAATATTGTGCCTCAGCAAGGAAGAGAGAGCATGGTTCAGGATTATaGACCGAAGGTGCTTCTGTG +
Preference number: 4 (lower is better)
Translates to: GPVTEGAWEYCASARKREHGSGL*TEGASV
Trigger: CACAGAAGCACCTTCGGTCCATAATCCTGAACCATG...CTCTCTCTTCCTTGCTGAGGCACAATATTCCCATGCCCCCTCAGTTACAGGCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp CATCCCAACAGAGCCCTGCTGGCCCAAGGTCCTCTCCTCTTGACCCCAAGTGCTCATTGGGATCCATCTTaGTCATCATTCTTTCTTCCA +
Preference number: 4 (lower is better)
Translates to: HPNRALLAQGPLLLTPSAHWDPS*SSFFLP
Trigger: TGGAAGAAAGAATGATGACCAAGATGGATCCCAATG...AGCACTTGGGGTCAAGAGGAGAGGACCTTGGGCCAGCAGGGCTCTGTTGGGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp AGGAAAGAGGCTGTGCGCGTGGGCTTCCAGTGCTGCAGCACCAATGAAGGCCGTCATTGGGATCCATCTTaGTCATCATTCTTTCTTCCA +
Preference number: 4 (lower is better)
Translates to: RKEAVRVGFQCCSTNEGRHWDPS*SSFFLP
Trigger: TGGAAGAAAGAATGATGACCAAGATGGATCCCAATG...ACGGCCTTCATTGGTGCTGCAGCACTGGAAGCCCACGCGCACAGCCTCTTTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp CTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCCCTGCTGGCCCAAGGCATTGGGATCCATCTTaGTCATCATTCTTTCTTCCA +
Preference number: 4 (lower is better)
Translates to: LCLAHCALSSQQSPAGPRHWDPS*SSFFLP
Trigger: TGGAAGAAAGAATGATGACCAAGATGGATCCCAATG...CCTTGGGCCAGCAGGGCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp GGGCCTGTAACTGAGGGGGCATGGGAATATTGTGCCTCAGCAAGGAAGAGAGAGTCTGAGCCTGGTCATTaGGATCCATCTTGGTCATCA +
Preference number: 4 (lower is better)
Translates to: GPVTEGAWEYCASARKRESEPGH*DPSWSS
Trigger: TGATGACCAAGATGGATCCCAATGACCAGGCTCAGA...CTCTCTCTTCCTTGCTGAGGCACAATATTCCCATGCCCCCTCAGTTACAGGCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp TCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCCCTGCTGGCCCGCATTTTATAGTCCTTaGTATACATGGCCTTGCGCT +
Preference number: 4 (lower is better)
Translates to: SSVPSSLRSIIPTEPCWPAFYSP*YTWPCA
Trigger: AGCGCAAGGCCATGTATACCAAGGACTATAAAATGC...GGGCCAGCAGGGCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp CTTCTGCTGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACACTCATCCTCTCAGACTaGCGCAACCGCAGAATTTCT +
Preference number: 4 (lower is better)
Translates to: LLLLLSSVPSSLRSIIPTLILSD*RNRRIS
Trigger: AGAAATTCTGCGGTTGCGCCAGTCTGAGAGGATGAG...TGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCAGCAGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp GGGCCTGTAACTGAGGGGGCATGGGAATATTGTGCCTCAGCAAGGAAGAGAGAGACAATTGGTGGGGACTaGAAATCATCCTGGCTCATC +
Preference number: 4 (lower is better)
Translates to: GPVTEGAWEYCASARKRETIGGD*KSSWLI
Trigger: GATGAGCCAGGATGATTTCCAGTCCCCACCAATTGT...CTCTCTCTTCCTTGCTGAGGCACAATATTCCCATGCCCCCTCAGTTACAGGCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CCA 90 bp TGCTGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCAAGCTCCACAATTGGTaGGGACTGGAAATCATCCTG +
Preference number: 4 (lower is better)
Translates to: CCCSLLCLAHCALSSQQSKLHNW*GLEIIL
Trigger: CAGGATGATTTCCAGTCCCCACCAATTGTGGAGCTT...GCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCAGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR TCA 90 bp AGACCTATTAAGCAGGAGCTCAAGGCCTGTTCTTGCCTGAGCCACCTGAAGACAGGTCTCCATACTAGATaGCTGGGTCCTTTCCATCAG +
Preference number: 4 (lower is better)
Translates to: RPIKQELKACSCLSHLKTGLHTR*LGPFHQ
Trigger: CTGATGGAAAGGACCCAGTCATCTAGTATGGAGACC...TGTCTTCAGGTGGCTCAGGCAAGAACAGGCCTTGAGCTCCTGCTTAATAGGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR TCA 90 bp AGGCCCTCAATTAACAACGAGTTGACTGAGTTGGGCACTAGCACCTTCCTGGTCGAAAGTCACGTCAGCTaGGAGCTTAGCCAACTCCTT +
Preference number: 4 (lower is better)
Translates to: RPSINNELTELGTSTFLVESHVS*ELSQLL
Trigger: AAGGAGTTGGCTAAGCTCTCAGCTGACGTGACTTTC...GACCAGGAAGGTGCTAGTGCCCAACTCAGTCAACTCGTTGTTAATTGAGGGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR TCA 90 bp TACCACAATCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCGAAAGTCACGTCAGCTaGGAGCTTAGCCAACTCCTT +
Preference number: 4 (lower is better)
Translates to: YHNHYRVCTSGVGCQCLSESHVS*ELSQLL
Trigger: AAGGAGTTGGCTAAGCTCTCAGCTGACGTGACTTTC...GGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGATTGTGGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR TCA 90 bp CATCCCAACAGAGCCCTGCTGGCCCAAGGTCCTCTCCTCTTGACCCCAAGTGCTAGTTTACTCTTGAACTaGTCCAAAGAGTTGGGTTTA +
Preference number: 4 (lower is better)
Translates to: HPNRALLAQGPLLLTPSASLLLN*SKELGL
Trigger: TAAACCCAACTCTTTGGATCAGTTCAAGAGTAAACT...AGCACTTGGGGTCAAGAGGAGAGGACCTTGGGCCAGCAGGGCTCTGTTGGGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR TCA 90 bp GGCTCTCCAACAAACCAGAGAGGAGACTTGAAAGGAAAGGGGATGGCTGTCAGTAATGTCACCTCCCCTTaGGGGTTGTCATCCAAGTCA +
Preference number: 4 (lower is better)
Translates to: GSPTNQRGDLKGKGMAVSNVTSP*GLSSKS
Trigger: TGACTTGGATGACAACCCTCAAGGGGAGGTGACATT...ACTGACAGCCATCCCCTTTCCTTTCAAGTCTCCTCTCTGGTTTGTTGGAGAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR TCA 90 bp TCATTCCTAAAGCCTAAGAGAGCAGGACTCAGGCTGGAGGCCTCTGCCTGGCCACTCTTCTCTTTCATGTaGGGACAGTCTTTTCCAGTA +
Preference number: 4 (lower is better)
Translates to: SFLKPKRAGLRLEASAWPLFSFM*GQSFPV
Trigger: TACTGGAAAAGACTGTCCTCACATGAAAGAGAAGAG...TGGCCAGGCAGAGGCCTCCAGCCTGAGTCCTGCTCTCTTAGGCTTTAGGAATGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR TCA 90 bp ATCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCTGGGCCCCTCTTCTCTTTCATGTaGGGACAGTCTTTTCCAGTA +
Preference number: 4 (lower is better)
Translates to: ITTEFVQVAWAASVSPGPLFSFM*GQSFPV
Trigger: TACTGGAAAAGACTGTCCTCACATGAAAGAGAAGAG...GGGCCCAGGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR GCA 90 bp TGCTGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCCTGGCTCACGTACCCTaGAATCTGCTTAATAAAGGT +
Preference number: 4 (lower is better)
Translates to: CCCSLLCLAHCALSSQQSLAHVP*NLLNKG
Trigger: ACCTTTATTAAGCAGATTGCAGGGTACGTGAGCCAG...GCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR GCA 90 bp TTTGAAAGGCACAAGTACTCGAGCTGTTCCCTGGCTGTGTCCCTGGCAGGGGAACTGGCTCACGTACCCTaGAATCTGCTTAATAAAGGT +
Preference number: 4 (lower is better)
Translates to: FERHKYSSCSLAVSLAGELAHVP*NLLNKG
Trigger: ACCTTTATTAAGCAGATTGCAGGGTACGTGAGCCAG...TTCCCCTGCCAGGGACACAGCCAGGGAACAGCTCGAGTACTTGTGCCTTTCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
CDS-3UTR GCA 90 bp CATGGACCAGCTTTGGCCCACATGGGCTCTCCAACAAACCAGAGAGGAGACTTGACAGGAATTTTCTCCTaGAGGGATTCGAATGTCACC +
Preference number: 4 (lower is better)
Translates to: HGPALAHMGSPTNQRGDLTGIFS*RDSNVT
Trigger: GGTGACATTCGAATCCCTGCAGGAGAAAATTCCTGT...CAAGTCTCCTCTCTGGTTTGTTGGAGAGCCCATGTGGGCCAAAGCTGGTCCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR GCA 90 bp GAGGGGCCTGTAACTGAGGGGGCATGGGAATATTGTGCCTCAGCAAGGAAGAGAACAGGAATTTTCTCCTaGAGGGATTCGAATGTCACC +
Preference number: 4 (lower is better)
Translates to: EGPVTEGAWEYCASARKRTGIFS*RDSNVT
Trigger: GGTGACATTCGAATCCCTGCAGGAGAAAATTCCTGT...TCTCTTCCTTGCTGAGGCACAATATTCCCATGCCCCCTCAGTTACAGGCCCCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp CTTCTGCTGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACATCTGTGCAAAGGCATTaGCCATGTCCTGTCTCTTGT +
Preference number: 4 (lower is better)
Translates to: LLLLLSSVPSSLRSIIPTSVQRH*PCPVSC
Trigger: ACAAGAGACAGGACATGGCCAATGCCTTTGCACAGA...TGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCAGCAGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp TTCTGCTGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGCATGGTTCAGGATTATaGACCGAAGGTGCTTCTGTG +
Preference number: 4 (lower is better)
Translates to: FCCCSLLCLAHCALSSQQHGSGL*TEGASV
Trigger: CACAGAAGCACCTTCGGTCCATAATCCTGAACCATG...CTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCAGCAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp TGCTGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCTTCCCTCTGATCACATaGTTCAGGATTATGGACCGA +
Preference number: 4 (lower is better)
Translates to: CCCSLLCLAHCALSSQQSFPLIT*FRIMDR
Trigger: TCGGTCCATAATCCTGAACCATGTGATCAGAGGGAA...GCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp GAGGGGCCTGTAACTGAGGGGGCATGGGAATATTGTGCCTCAGCAAGGAAGAGATTCCCTCTGATCACATaGTTCAGGATTATGGACCGA +
Preference number: 4 (lower is better)
Translates to: EGPVTEGAWEYCASARKRFPLIT*FRIMDR
Trigger: TCGGTCCATAATCCTGAACCATGTGATCAGAGGGAA...TCTCTTCCTTGCTGAGGCACAATATTCCCATGCCCCCTCAGTTACAGGCCCCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp AAGGCACAAGTACTCGAGCTGTTCCCTGGCTGTGTCCCTGGCAGGGGAAAAAGGGCATTTTATAGTCCTTaGTATACATGGCCTTGCGCT +
Preference number: 4 (lower is better)
Translates to: KAQVLELFPGCVPGRGKRAFYSP*YTWPCA
Trigger: AGCGCAAGGCCATGTATACCAAGGACTATAAAATGC...CCTTTTTCCCCTGCCAGGGACACAGCCAGGGAACAGCTCGAGTACTTGTGCCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp CTGCAAGGACAAGAGAGACGGGTGTCTCTAGAGACTAGACATGGTAGGGCCAAAGTCTTGTTCAGCAGCTaGATGCAGATCCCGAAGAGT +
Preference number: 4 (lower is better)
Translates to: LQGQERRVSLETRHGRAKVLFSS*MQIPKS
Trigger: ACTCTTCGGGATCTGCATCCAGCTGCTGAACAAGAC...TTTGGCCCTACCATGTCTAGTCTCTAGAGACACCCGTCTCTCTTGTCCTTGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CCA 90 bp AGACCTATTAAGCAGGAGCTCAAGGCCTGTTCTTGCCTGAGCCACCTGAAGACAGTCTTGTTCAGCAGCTaGATGCAGATCCCGAAGAGT +
Preference number: 4 (lower is better)
Translates to: RPIKQELKACSCLSHLKTVLFSS*MQIPKS
Trigger: ACTCTTCGGGATCTGCATCCAGCTGCTGAACAAGAC...TGTCTTCAGGTGGCTCAGGCAAGAACAGGCCTTGAGCTCCTGCTTAATAGGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CCA 90 bp AGACCTATTAAGCAGGAGCTCAAGGCCTGTTCTTGCCTGAGCCACCTGAAGACACTCATCCTCTCAGACTaGCGCAACCGCAGAATTTCT +
Preference number: 4 (lower is better)
Translates to: RPIKQELKACSCLSHLKTLILSD*RNRRIS
Trigger: AGAAATTCTGCGGTTGCGCCAGTCTGAGAGGATGAG...TGTCTTCAGGTGGCTCAGGCAAGAACAGGCCTTGAGCTCCTGCTTAATAGGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CCA 90 bp TTCTGCTGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGACAATTGGTGGGGACTaGAAATCATCCTGGCTCATC +
Preference number: 4 (lower is better)
Translates to: FCCCSLLCLAHCALSSQQTIGGD*KSSWLI
Trigger: GATGAGCCAGGATGATTTCCAGTCCCCACCAATTGT...CTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCAGCAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp TTCTGCTGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGTCGAAGCTCCACAATTaGTGGGGACTGGAAATCATC +
Preference number: 4 (lower is better)
Translates to: FCCCSLLCLAHCALSSQQSKLHN*WGLEII
Trigger: GATGATTTCCAGTCCCCACCAATTGTGGAGCTTCGA...CTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCAGCAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp TTAGACCTTGTCTCAGAAAAACAAAACTTAAGGCAGAGGCTCCCAGAATGCACATGGCTGCCTGGCTTGTaGGGATACCGCTGTGCTGGC +
Preference number: 4 (lower is better)
Translates to: LDLVSEKQNLRQRLPECTWLPGL*GYRCAG
Trigger: GCCAGCACAGCGGTATCCCCACAAGCCAGGCAGCCA...TGTGCATTCTGGGAGCCTCTGCCTTAAGTTTTGTTTTTCTGAGACAAGGTCTAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp ATTAGACCTTGTCTCAGAAAAACAAAACTTAAGGCAGAGGCTCCCAGAATGCACTGGCTGCCTGGCTTGTaGGGATACCGCTGTGCTGGC +
Preference number: 4 (lower is better)
Translates to: IRPCLRKTKLKAEAPRMHWLPGL*GYRCAG
Trigger: GCCAGCACAGCGGTATCCCCACAAGCCAGGCAGCCA...GTGCATTCTGGGAGCCTCTGCCTTAAGTTTTGTTTTTCTGAGACAAGGTCTAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp AGACCTATTAAGCAGGAGCTCAAGGCCTGTTCTTGCCTGAGCCACCTGAAGACATCTTGGTTAGCTCGCTaGACATATCCTTCCCCAGGA +
Preference number: 4 (lower is better)
Translates to: RPIKQELKACSCLSHLKTSWLAR*TYPSPG
Trigger: TCCTGGGGAAGGATATGTCCAGCGAGCTAACCAAGA...TGTCTTCAGGTGGCTCAGGCAAGAACAGGCCTTGAGCTCCTGCTTAATAGGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
3UTR CAA 72 bp GTAGGCTGTTGCCAGCTGGCATCACGAAAGCATTCGTaGATTCAATGCTTCCTGAGACCTACAATGGTGCCC +
Preference number: 4 (lower is better)
Translates to: VGCCQLASRKHS*IQCFLRPTMVP
Trigger: GGGCACCATTGTAGGTCTCAGGAAGCATTGAATCAACGAATGCTTTCGTGATGCCAGCTGGCAACAGCCTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
CDS-3UTR TCA 90 bp GAGGGGCCTGTAACTGAGGGGGCATGGGAATATTGTGCCTCAGCAAGGAAGAGAACTTGTTGGGAGCAATaGAATTCAGTGTCTCATCAG +
Preference number: 4 (lower is better)
Translates to: EGPVTEGAWEYCASARKRTCWEQ*NSVSHQ
Trigger: CTGATGAGACACTGAATTTCATTGCTCCCAACAAGT...TCTCTTCCTTGCTGAGGCACAATATTCCCATGCCCCCTCAGTTACAGGCCCCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR GCA 90 bp CTTCTGCTGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAATTATGGACCGAAGGTaGTTCTGTGCAAAGGCATTG +
Preference number: 4 (lower is better)
Translates to: LLLLLSSVPSSLRSIIPTIMDRR*FCAKAL
Trigger: CAATGCCTTTGCACAGAAGCACCTTCGGTCCATAAT...TGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCAGCAGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR GCA 90 bp TTAGACCTTGTCTCAGAAAAACAAAACTTAAGGCAGAGGCTCCCAGAATGCACAGGGAGCTCCCCGACCTaGAGGATCTCACAGAGCATC +
Preference number: 4 (lower is better)
Translates to: LDLVSEKQNLRQRLPECTGSSPT*RISQSI
Trigger: GATGCTCTGTGAGATCCTGCAGGTCGGGGAGCTCCC...TGTGCATTCTGGGAGCCTCTGCCTTAAGTTTTGTTTTTCTGAGACAAGGTCTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR GCA 90 bp ATTAGACCTTGTCTCAGAAAAACAAAACTTAAGGCAGAGGCTCCCAGAATGCACGTGGGGATACCGCTGTaGTGGCCACACCTCCTCACA +
Preference number: 4 (lower is better)
Translates to: IRPCLRKTKLKAEAPRMHVGIPL*WPHLLT
Trigger: TGTGAGGAGGTGTGGCCAGCACAGCGGTATCCCCAC...GTGCATTCTGGGAGCCTCTGCCTTAAGTTTTGTTTTTCTGAGACAAGGTCTAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp AGGCCCTCAATTAACAACGAGTTGACTGAGTTGGGCACTAGCACCTTCCTGGTCTCTGTGCAAAGGCATTaGCCATGTCCTGTCTCTTGT +
Preference number: 4 (lower is better)
Translates to: RPSINNELTELGTSTFLVSVQRH*PCPVSC
Trigger: ACAAGAGACAGGACATGGCCAATGCCTTTGCACAGA...GACCAGGAAGGTGCTAGTGCCCAACTCAGTCAACTCGTTGTTAATTGAGGGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp GAGGGGCCTGTAACTGAGGGGGCATGGGAATATTGTGCCTCAGCAAGGAAGAGACATCTCTGTTTTGATTaGACGATTCCCTCTGATCAC +
Preference number: 4 (lower is better)
Translates to: EGPVTEGAWEYCASARKRHLCFD*TIPSDH
Trigger: GTGATCAGAGGGAATCGTCCAATCAAAACAGAGATG...TCTCTTCCTTGCTGAGGCACAATATTCCCATGCCCCCTCAGTTACAGGCCCCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp TGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCCCTCATCTCTGTTTTGATTaGACGATTCCCTCTGATCAC +
Preference number: 4 (lower is better)
Translates to: CCSLLCLAHCALSSQQSPHLCFD*TIPSDH
Trigger: GTGATCAGAGGGAATCGTCCAATCAAAACAGAGATG...AGGGCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp AGGCCCTCAATTAACAACGAGTTGACTGAGTTGGGCACTAGCACCTTCCTGGTCTCTGAGCCTGGTCATTaGGATCCATCTTGGTCATCA +
Preference number: 4 (lower is better)
Translates to: RPSINNELTELGTSTFLVSEPGH*DPSWSS
Trigger: TGATGACCAAGATGGATCCCAATGACCAGGCTCAGA...GACCAGGAAGGTGCTAGTGCCCAACTCAGTCAACTCGTTGTTAATTGAGGGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp CTGCAAGGACAAGAGAGACGGGTGTCTCTAGAGACTAGACATGGTAGGGCCAAAGGTGAAGTCCAAGGCTaGGTTGATATGGTTGGTGAA +
Preference number: 4 (lower is better)
Translates to: LQGQERRVSLETRHGRAKGEVQG*VDMVGE
Trigger: TTCACCAACCATATCAACCCAGCCTTGGACTTCACC...TTTGGCCCTACCATGTCTAGTCTCTAGAGACACCCGTCTCTCTTGTCCTTGCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp GGCTCTCCAACAAACCAGAGAGGAGACTTGAAAGGAAAGGGGATGGCTGTCAGTGGTGAAGTCCAAGGCTaGGTTGATATGGTTGGTGAA +
Preference number: 4 (lower is better)
Translates to: GSPTNQRGDLKGKGMAVSGEVQG*VDMVGE
Trigger: TTCACCAACCATATCAACCCAGCCTTGGACTTCACC...ACTGACAGCCATCCCCTTTCCTTTCAAGTCTCCTCTCTGGTTTGTTGGAGAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp ACCACAATCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCTACAATTGGTGGGGACTaGAAATCATCCTGGCTCATC +
Preference number: 4 (lower is better)
Translates to: TTITTEFVQVAWAASVSPTIGGD*KSSWLI
Trigger: GATGAGCCAGGATGATTTCCAGTCCCCACCAATTGT...AGGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGATTGTGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CCA 90 bp TACCACAATCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCACAATTGGTGGGGACTaGAAATCATCCTGGCTCATC +
Preference number: 4 (lower is better)
Translates to: YHNHYRVCTSGVGCQCLSTIGGD*KSSWLI
Trigger: GATGAGCCAGGATGATTTCCAGTCCCCACCAATTGT...GGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGATTGTGGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CCA 90 bp TACCACAATCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCAAGCTCCACAATTGGTaGGGACTGGAAATCATCCTG +
Preference number: 4 (lower is better)
Translates to: YHNHYRVCTSGVGCQCLSKLHNW*GLEIIL
Trigger: CAGGATGATTTCCAGTCCCCACCAATTGTGGAGCTT...GGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGATTGTGGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CCA 90 bp TACCACAATCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCTCGAAGCTCCACAATTaGTGGGGACTGGAAATCATC +
Preference number: 4 (lower is better)
Translates to: YHNHYRVCTSGVGCQCLSSKLHN*WGLEII
Trigger: GATGATTTCCAGTCCCCACCAATTGTGGAGCTTCGA...GGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGATTGTGGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR TCA 90 bp ATCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCTGGGCCCAGTTTACTCTTGAACTaGTCCAAAGAGTTGGGTTTA +
Preference number: 4 (lower is better)
Translates to: ITTEFVQVAWAASVSPGPSLLLN*SKELGL
Trigger: TAAACCCAACTCTTTGGATCAGTTCAAGAGTAAACT...GGGCCCAGGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR TCA 90 bp CACACTGAAATGAAGGCTGTCAGGCCGCTCCTCACCCTTGGGACAGGGAATAAGTACGAAGTTTACTCTTaGACTGATCCAAAGAGTTGG +
Preference number: 4 (lower is better)
Translates to: HTEMKAVRPLLTLGTGNKYEVYS*TDPKSW
Trigger: CCAACTCTTTGGATCAGTTCAAGAGTAAACTTCGTA...CTTATTCCCTGTCCCAAGGGTGAGGAGCGGCCTGACAGCCTTCATTTCAGTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
CDS-3UTR TCA 90 bp GAGGGGCCTGTAACTGAGGGGGCATGGGAATATTGTGCCTCAGCAAGGAAGAGATACGAAGTTTACTCTTaGACTGATCCAAAGAGTTGG +
Preference number: 4 (lower is better)
Translates to: EGPVTEGAWEYCASARKRYEVYS*TDPKSW
Trigger: CCAACTCTTTGGATCAGTTCAAGAGTAAACTTCGTA...TCTCTTCCTTGCTGAGGCACAATATTCCCATGCCCCCTCAGTTACAGGCCCCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR TCA 90 bp TTCTGCTGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGACTTGTTGGGAGCAATaGAATTCAGTGTCTCATCAG +
Preference number: 4 (lower is better)
Translates to: FCCCSLLCLAHCALSSQQTCWEQ*NSVSHQ
Trigger: CTGATGAGACACTGAATTTCATTGCTCCCAACAAGT...CTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCAGCAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR TCA 90 bp TTAGACCTTGTCTCAGAAAAACAAAACTTAAGGCAGAGGCTCCCAGAATGCACAAGACAGACCTCTGTGTaGAGTGGGCAGTCCAGCCCA +
Preference number: 4 (lower is better)
Translates to: LDLVSEKQNLRQRLPECTRQTSV*SGQSSP
Trigger: TGGGCTGGACTGCCCACTTCACACAGAGGTCTGTCT...TGTGCATTCTGGGAGCCTCTGCCTTAAGTTTTGTTTTTCTGAGACAAGGTCTAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR GCA 90 bp AGGCCCTCAATTAACAACGAGTTGACTGAGTTGGGCACTAGCACCTTCCTGGTCCTGGCTCACGTACCCTaGAATCTGCTTAATAAAGGT +
Preference number: 4 (lower is better)
Translates to: RPSINNELTELGTSTFLVLAHVP*NLLNKG
Trigger: ACCTTTATTAAGCAGATTGCAGGGTACGTGAGCCAG...GACCAGGAAGGTGCTAGTGCCCAACTCAGTCAACTCGTTGTTAATTGAGGGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR GCA 90 bp GGCTCTCCAACAAACCAGAGAGGAGACTTGAAAGGAAAGGGGATGGCTGTCAGTCTGGCTCACGTACCCTaGAATCTGCTTAATAAAGGT +
Preference number: 4 (lower is better)
Translates to: GSPTNQRGDLKGKGMAVSLAHVP*NLLNKG
Trigger: ACCTTTATTAAGCAGATTGCAGGGTACGTGAGCCAG...ACTGACAGCCATCCCCTTTCCTTTCAAGTCTCCTCTCTGGTTTGTTGGAGAGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR GCA 90 bp AGGCCCTCAATTAACAACGAGTTGACTGAGTTGGGCACTAGCACCTTCCTGGTCATTATGGACCGAAGGTaGTTCTGTGCAAAGGCATTG +
Preference number: 4 (lower is better)
Translates to: RPSINNELTELGTSTFLVIMDRR*FCAKAL
Trigger: CAATGCCTTTGCACAGAAGCACCTTCGGTCCATAAT...GACCAGGAAGGTGCTAGTGCCCAACTCAGTCAACTCGTTGTTAATTGAGGGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR GCA 90 bp AGGCCCTCAATTAACAACGAGTTGACTGAGTTGGGCACTAGCACCTTCCTGGTCACAGGAATTTTCTCCTaGAGGGATTCGAATGTCACC +
Preference number: 4 (lower is better)
Translates to: RPSINNELTELGTSTFLVTGIFS*RDSNVT
Trigger: GGTGACATTCGAATCCCTGCAGGAGAAAATTCCTGT...GACCAGGAAGGTGCTAGTGCCCAACTCAGTCAACTCGTTGTTAATTGAGGGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR GCA 90 bp GGCTCTCCAACAAACCAGAGAGGAGACTTGAAAGGAAAGGGGATGGCTGTCAGTTCTAGAGGGTTAAGGTaGTTGTCCTGTCTCTTGTCT +
Preference number: 4 (lower is better)
Translates to: GSPTNQRGDLKGKGMAVSSRGLR*LSCLLS
Trigger: AGACAAGAGACAGGACAAGCACCTTAACCCTCTAGA...ACTGACAGCCATCCCCTTTCCTTTCAAGTCTCCTCTCTGGTTTGTTGGAGAGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000074046.13
CDS-3UTR CCA 90 bp TTAGACCTTGTCTCAGAAAAACAAAACTTAAGGCAGAGGCTCCCAGAATGCACATGGACACATCGACCATaGGCTGGCTCACGTACCCTG +
Preference number: 4 (lower is better)
Translates to: LDLVSEKQNLRQRLPECTWTHRP*AGSRTL
Trigger: CAGGGTACGTGAGCCAGCCCATGGTCGATGTGTCCA...TGTGCATTCTGGGAGCCTCTGCCTTAAGTTTTGTTTTTCTGAGACAAGGTCTAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp GAGGGGCCTGTAACTGAGGGGGCATGGGAATATTGTGCCTCAGCAAGGAAGAGACATTGGGATCCATCTTaGTCATCATTCTTTCTTCCA +
Preference number: 4 (lower is better)
Translates to: EGPVTEGAWEYCASARKRHWDPS*SSFFLP
Trigger: TGGAAGAAAGAATGATGACCAAGATGGATCCCAATG...TCTCTTCCTTGCTGAGGCACAATATTCCCATGCCCCCTCAGTTACAGGCCCCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR TCA 90 bp AGGCCCTCAATTAACAACGAGTTGACTGAGTTGGGCACTAGCACCTTCCTGGTCCTCTTCTCTTTCATGTaGGGACAGTCTTTTCCAGTA +
Preference number: 4 (lower is better)
Translates to: RPSINNELTELGTSTFLVLFSFM*GQSFPV
Trigger: TACTGGAAAAGACTGTCCTCACATGAAAGAGAAGAG...GACCAGGAAGGTGCTAGTGCCCAACTCAGTCAACTCGTTGTTAATTGAGGGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR TCA 90 bp AGACCTATTAAGCAGGAGCTCAAGGCCTGTTCTTGCCTGAGCCACCTGAAGACACTCTTCTCTTTCATGTaGGGACAGTCTTTTCCAGTA +
Preference number: 4 (lower is better)
Translates to: RPIKQELKACSCLSHLKTLFSFM*GQSFPV
Trigger: TACTGGAAAAGACTGTCCTCACATGAAAGAGAAGAG...TGTCTTCAGGTGGCTCAGGCAAGAACAGGCCTTGAGCTCCTGCTTAATAGGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR GCA 90 bp TTCTGCTGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGACGTACCCTGCAATCTaGTTAATAAAGGTGACTGAA +
Preference number: 4 (lower is better)
Translates to: FCCCSLLCLAHCALSSQQTYPAI*LIKVTE
Trigger: TTCAGTCACCTTTATTAAGCAGATTGCAGGGTACGT...CTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCAGCAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR GCA 90 bp ACTCAGAGTTGCAATTTAGTTAAAGAAGAAAACTCAGCTGGGCTTGGTGGCGCACCGAAGGTGCTTCTGTaGAAAGGCATTGGCCATGTC +
Preference number: 4 (lower is better)
Translates to: TQSCNLVKEENSAGLGGAPKVLL*KGIGHV
Trigger: GACATGGCCAATGCCTTTGCACAGAAGCACCTTCGG...TGCGCCACCAAGCCCAGCTGAGTTTTCTTCTTTAACTAAATTGCAACTCTGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103088.10
CDS-3UTR GCA 90 bp CTGCAAGGACAAGAGAGACGGGTGTCTCTAGAGACTAGACATGGTAGGGCCAAATGCTCTCGGACAACTTaGATAACCTTGTTGAAATCC +
Preference number: 4 (lower is better)
Translates to: LQGQERRVSLETRHGRAKCSRTT*ITLLKS
Trigger: GGATTTCAACAAGGTTATGCAAGTTGTCCGAGAGCA...TTTGGCCCTACCATGTCTAGTCTCTAGAGACACCCGTCTCTCTTGTCCTTGCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR GCA 90 bp GGCTCTCCAACAAACCAGAGAGGAGACTTGAAAGGAAAGGGGATGGCTGTCAGTTGCTCTCGGACAACTTaGATAACCTTGTTGAAATCC +
Preference number: 4 (lower is better)
Translates to: GSPTNQRGDLKGKGMAVSCSRTT*ITLLKS
Trigger: GGATTTCAACAAGGTTATGCAAGTTGTCCGAGAGCA...ACTGACAGCCATCCCCTTTCCTTTCAAGTCTCCTCTCTGGTTTGTTGGAGAGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR GCA 90 bp ATTAGACCTTGTCTCAGAAAAACAAAACTTAAGGCAGAGGCTCCCAGAATGCACCGGTTGAGGCGCTGTTaGTTGATCAGCTCCAGGATC +
Preference number: 4 (lower is better)
Translates to: IRPCLRKTKLKAEAPRMHRLRRC*LISSRI
Trigger: GATCCTGGAGCTGATCAAGCAACAGCGCCTCAACCG...GTGCATTCTGGGAGCCTCTGCCTTAAGTTTTGTTTTTCTGAGACAAGGTCTAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR GCA 90 bp GGGCCTGTAACTGAGGGGGCATGGGAATATTGTGCCTCAGCAAGGAAGAGAGAGTTAATATTTTTCTCCTaGAGGGATTCGAATGTCACC +
Preference number: 4 (lower is better)
Translates to: GPVTEGAWEYCASARKRELIFFS*RDSNVT
Trigger: GGTGACATTCGAATCCCTGCAGGAGAAAAATATTAA...CTCTCTCTTCCTTGCTGAGGCACAATATTCCCATGCCCCCTCAGTTACAGGCCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000148643.8
CDS-3UTR CCA 90 bp AGGCCCTCAATTAACAACGAGTTGACTGAGTTGGGCACTAGCACCTTCCTGGTCCATCTCTGTTTTGATTaGACGATTCCCTCTGATCAC +
Preference number: 4 (lower is better)
Translates to: RPSINNELTELGTSTFLVHLCFD*TIPSDH
Trigger: GTGATCAGAGGGAATCGTCCAATCAAAACAGAGATG...GACCAGGAAGGTGCTAGTGCCCAACTCAGTCAACTCGTTGTTAATTGAGGGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR TCA 90 bp GGCTCTCCAACAAACCAGAGAGGAGACTTGAAAGGAAAGGGGATGGCTGTCAGTTACGAAGTTTACTCTTaGACTGATCCAAAGAGTTGG +
Preference number: 4 (lower is better)
Translates to: GSPTNQRGDLKGKGMAVSYEVYS*TDPKSW
Trigger: CCAACTCTTTGGATCAGTTCAAGAGTAAACTTCGTA...ACTGACAGCCATCCCCTTTCCTTTCAAGTCTCCTCTCTGGTTTGTTGGAGAGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CCA 90 bp ACCACAATCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCTCATTGGGATCCATCTTaGTCATCATTCTTTCTTCCA +
Preference number: 4 (lower is better)
Translates to: TTITTEFVQVAWAASVSPHWDPS*SSFFLP
Trigger: TGGAAGAAAGAATGATGACCAAGATGGATCCCAATG...AGGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGATTGTGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp CAGCTGGCATCACGAAAGCATTCGTTGATTCAATGCTTCCTGAGACCTACAATGACAATTGGTGGGGACTaGAAATCATCCTGGCTCATC +
Preference number: 4 (lower is better)
Translates to: QLASRKHSLIQCFLRPTMTIGGD*KSSWLI
Trigger: GATGAGCCAGGATGATTTCCAGTCCCCACCAATTGT...CATTGTAGGTCTCAGGAAGCATTGAATCAACGAATGCTTTCGTGATGCCAGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
CDS-3UTR TCA 90 bp AGGCCCTCAATTAACAACGAGTTGACTGAGTTGGGCACTAGCACCTTCCTGGTCAGTTTACTCTTGAACTaGTCCAAAGAGTTGGGTTTA +
Preference number: 4 (lower is better)
Translates to: RPSINNELTELGTSTFLVSLLLN*SKELGL
Trigger: TAAACCCAACTCTTTGGATCAGTTCAAGAGTAAACT...GACCAGGAAGGTGCTAGTGCCCAACTCAGTCAACTCGTTGTTAATTGAGGGCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR TCA 90 bp TACCACAATCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCAGTTTACTCTTGAACTaGTCCAAAGAGTTGGGTTTA +
Preference number: 4 (lower is better)
Translates to: YHNHYRVCTSGVGCQCLSSLLLN*SKELGL
Trigger: TAAACCCAACTCTTTGGATCAGTTCAAGAGTAAACT...GGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGATTGTGGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR TCA 90 bp ACCACAATCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCTAGTTTACTCTTGAACTaGTCCAAAGAGTTGGGTTTA +
Preference number: 4 (lower is better)
Translates to: TTITTEFVQVAWAASVSPSLLLN*SKELGL
Trigger: TAAACCCAACTCTTTGGATCAGTTCAAGAGTAAACT...AGGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGATTGTGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CCA 90 bp ACTCAGAGTTGCAATTTAGTTAAAGAAGAAAACTCAGCTGGGCTTGGTGGCGCATTCTGGTACAGGCTCTaGCTGTTTAGTACCATGCTC +
Preference number: 4 (lower is better)
Translates to: TQSCNLVKEENSAGLGGAFWYRL*LFSTML
Trigger: GAGCATGGTACTAAACAGCCAGAGCCTGTACCAGAA...TGCGCCACCAAGCCCAGCTGAGTTTTCTTCTTTAACTAAATTGCAACTCTGAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp ATTAGACCTTGTCTCAGAAAAACAAAACTTAAGGCAGAGGCTCCCAGAATGCACGTCTTGTTCAGCAGCTaGATGCAGATCCCGAAGAGT +
Preference number: 4 (lower is better)
Translates to: IRPCLRKTKLKAEAPRMHVLFSS*MQIPKS
Trigger: ACTCTTCGGGATCTGCATCCAGCTGCTGAACAAGAC...GTGCATTCTGGGAGCCTCTGCCTTAAGTTTTGTTTTTCTGAGACAAGGTCTAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp TTAGACCTTGTCTCAGAAAAACAAAACTTAAGGCAGAGGCTCCCAGAATGCACACTCATCCTCTCAGACTaGCGCAACCGCAGAATTTCT +
Preference number: 4 (lower is better)
Translates to: LDLVSEKQNLRQRLPECTLILSD*RNRRIS
Trigger: AGAAATTCTGCGGTTGCGCCAGTCTGAGAGGATGAG...TGTGCATTCTGGGAGCCTCTGCCTTAAGTTTTGTTTTTCTGAGACAAGGTCTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR TCA 90 bp ACTCAGAGTTGCAATTTAGTTAAAGAAGAAAACTCAGCTGGGCTTGGTGGCGCATTGGACGATTCCCTCTaGTCACATGGTTCAGGATTA +
Preference number: 4 (lower is better)
Translates to: TQSCNLVKEENSAGLGGALDDSL*SHGSGL
Trigger: TAATCCTGAACCATGTGATCAGAGGGAATCGTCCAA...TGCGCCACCAAGCCCAGCTGAGTTTTCTTCTTTAACTAAATTGCAACTCTGAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp TTAGACCTTGTCTCAGAAAAACAAAACTTAAGGCAGAGGCTCCCAGAATGCACATTCTGGTACAGGCTCTaGCTGTTTAGTACCATGCTC +
Preference number: 4 (lower is better)
Translates to: LDLVSEKQNLRQRLPECTFWYRL*LFSTML
Trigger: GAGCATGGTACTAAACAGCCAGAGCCTGTACCAGAA...TGTGCATTCTGGGAGCCTCTGCCTTAAGTTTTGTTTTTCTGAGACAAGGTCTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp ATTAGACCTTGTCTCAGAAAAACAAAACTTAAGGCAGAGGCTCCCAGAATGCACCATGGTTCAGGATTATaGACCGAAGGTGCTTCTGTG +
Preference number: 4 (lower is better)
Translates to: IRPCLRKTKLKAEAPRMHHGSGL*TEGASV
Trigger: CACAGAAGCACCTTCGGTCCATAATCCTGAACCATG...GTGCATTCTGGGAGCCTCTGCCTTAAGTTTTGTTTTTCTGAGACAAGGTCTAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp CAGCTGGCATCACGAAAGCATTCGTTGATTCAATGCTTCCTGAGACCTACAATGCATCTCTGTTTTGATTaGACGATTCCCTCTGATCAC +
Preference number: 4 (lower is better)
Translates to: QLASRKHSLIQCFLRPTMHLCFD*TIPSDH
Trigger: GTGATCAGAGGGAATCGTCCAATCAAAACAGAGATG...CATTGTAGGTCTCAGGAAGCATTGAATCAACGAATGCTTTCGTGATGCCAGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
CDS-3UTR CCA 90 bp TTAGACCTTGTCTCAGAAAAACAAAACTTAAGGCAGAGGCTCCCAGAATGCACAGGTGAAGTCCAAGGCTaGGTTGATATGGTTGGTGAA +
Preference number: 4 (lower is better)
Translates to: LDLVSEKQNLRQRLPECTGEVQG*VDMVGE
Trigger: TTCACCAACCATATCAACCCAGCCTTGGACTTCACC...TGTGCATTCTGGGAGCCTCTGCCTTAAGTTTTGTTTTTCTGAGACAAGGTCTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp ATTAGACCTTGTCTCAGAAAAACAAAACTTAAGGCAGAGGCTCCCAGAATGCACGGTGAAGTCCAAGGCTaGGTTGATATGGTTGGTGAA +
Preference number: 4 (lower is better)
Translates to: IRPCLRKTKLKAEAPRMHGEVQG*VDMVGE
Trigger: TTCACCAACCATATCAACCCAGCCTTGGACTTCACC...GTGCATTCTGGGAGCCTCTGCCTTAAGTTTTGTTTTTCTGAGACAAGGTCTAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp TTAGACCTTGTCTCAGAAAAACAAAACTTAAGGCAGAGGCTCCCAGAATGCACAACAATTGGTGGGGACTaGAAATCATCCTGGCTCATC +
Preference number: 4 (lower is better)
Translates to: LDLVSEKQNLRQRLPECTTIGGD*KSSWLI
Trigger: GATGAGCCAGGATGATTTCCAGTCCCCACCAATTGT...TGTGCATTCTGGGAGCCTCTGCCTTAAGTTTTGTTTTTCTGAGACAAGGTCTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR TCA 90 bp ATTAGACCTTGTCTCAGAAAAACAAAACTTAAGGCAGAGGCTCCCAGAATGCACTTGGACGATTCCCTCTaGTCACATGGTTCAGGATTA +
Preference number: 4 (lower is better)
Translates to: IRPCLRKTKLKAEAPRMHLDDSL*SHGSGL
Trigger: TAATCCTGAACCATGTGATCAGAGGGAATCGTCCAA...GTGCATTCTGGGAGCCTCTGCCTTAAGTTTTGTTTTTCTGAGACAAGGTCTAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR GCA 90 bp TTAGACCTTGTCTCAGAAAAACAAAACTTAAGGCAGAGGCTCCCAGAATGCACAACAGGAATTTTCTCCTaGAGGGATTCGAATGTCACC +
Preference number: 4 (lower is better)
Translates to: LDLVSEKQNLRQRLPECTTGIFS*RDSNVT
Trigger: GGTGACATTCGAATCCCTGCAGGAGAAAATTCCTGT...TGTGCATTCTGGGAGCCTCTGCCTTAAGTTTTGTTTTTCTGAGACAAGGTCTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR TCA 90 bp ACTCAGAGTTGCAATTTAGTTAAAGAAGAAAACTCAGCTGGGCTTGGTGGCGCATACGAAGTTTACTCTTaGACTGATCCAAAGAGTTGG +
Preference number: 4 (lower is better)
Translates to: TQSCNLVKEENSAGLGGAYEVYS*TDPKSW
Trigger: CCAACTCTTTGGATCAGTTCAAGAGTAAACTTCGTA...TGCGCCACCAAGCCCAGCTGAGTTTTCTTCTTTAACTAAATTGCAACTCTGAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103088.10
CDS-3UTR TCA 90 bp ATTAGACCTTGTCTCAGAAAAACAAAACTTAAGGCAGAGGCTCCCAGAATGCACCTCTTCTCTTTCATGTaGGGACAGTCTTTTCCAGTA +
Preference number: 4 (lower is better)
Translates to: IRPCLRKTKLKAEAPRMHLFSFM*GQSFPV
Trigger: TACTGGAAAAGACTGTCCTCACATGAAAGAGAAGAG...GTGCATTCTGGGAGCCTCTGCCTTAAGTTTTGTTTTTCTGAGACAAGGTCTAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR GCA 90 bp ACTCAGAGTTGCAATTTAGTTAAAGAAGAAAACTCAGCTGGGCTTGGTGGCGCACCTGGGAAAAGTAACTaGGAGATTACAAAGAGGAAA +
Preference number: 4 (lower is better)
Translates to: TQSCNLVKEENSAGLGGAPGKSN*EITKRK
Trigger: TTTCCTCTTTGTAATCTCGCAGTTACTTTTCCCAGG...TGCGCCACCAAGCCCAGCTGAGTTTTCTTCTTTAACTAAATTGCAACTCTGAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000103088.10
CDS-3UTR CCA 90 bp ATTAGACCTTGTCTCAGAAAAACAAAACTTAAGGCAGAGGCTCCCAGAATGCACGCATTTTATAGTCCTTaGTATACATGGCCTTGCGCT +
Preference number: 4 (lower is better)
Translates to: IRPCLRKTKLKAEAPRMHAFYSP*YTWPCA
Trigger: AGCGCAAGGCCATGTATACCAAGGACTATAAAATGC...GTGCATTCTGGGAGCCTCTGCCTTAAGTTTTGTTTTTCTGAGACAAGGTCTAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR GCA 90 bp ATTAGACCTTGTCTCAGAAAAACAAAACTTAAGGCAGAGGCTCCCAGAATGCACACGTACCCTGCAATCTaGTTAATAAAGGTGACTGAA +
Preference number: 4 (lower is better)
Translates to: IRPCLRKTKLKAEAPRMHTYPAI*LIKVTE
Trigger: TTCAGTCACCTTTATTAAGCAGATTGCAGGGTACGT...GTGCATTCTGGGAGCCTCTGCCTTAAGTTTTGTTTTTCTGAGACAAGGTCTAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CAA 90 bp CCTGAAGACAGTCACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCCCACTCCCGGGGACGTaGCTGGGGTCAGACTCTGCG +
Preference number: 5 (lower is better)
Translates to: PEDSHSEALTELPRPLAPPLPGT*LGSDSA
Trigger: CGCAGAGTCTGACCCCAGCAACGTCCCCGGGAGTGG...GGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGTGACTGTCTTCAGG
68% GC, longest homopolymer 7 nt, total homopolymer stretches 19 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CAA 90 bp CCTGAAGACAGTCACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCGTCTGGATCTCCTGGTaGGAGACCTGCAGGTGGGAG +
Preference number: 5 (lower is better)
Translates to: PEDSHSEALTELPRPLAPVWISW*ETCRWE
Trigger: CTCCCACCTGCAGGTCTCCAACCAGGAGATCCAGAC...GGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGTGACTGTCTTCAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CAA 90 bp CGCGTGGGCTTCCAGTGCTGCAGCACCAATGAAGGCCGTGGCACAGCTGTGGCCGTCTGGATCTCCTGGTaGGAGACCTGCAGGTGGGAG +
Preference number: 5 (lower is better)
Translates to: RVGFQCCSTNEGRGTAVAVWISW*ETCRWE
Trigger: CTCCCACCTGCAGGTCTCCAACCAGGAGATCCAGAC...GGCCACAGCTGTGCCACGGCCTTCATTGGTGCTGCAGCACTGGAAGCCCACGCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CAA 90 bp AGGAAAGAGGCTGTGCGCGTGGGCTTCCAGTGCTGCAGCACCAATGAAGGCCGTCCACTCCCGGGGACGTaGCTGGGGTCAGACTCTGCG +
Preference number: 5 (lower is better)
Translates to: RKEAVRVGFQCCSTNEGRPLPGT*LGSDSA
Trigger: CGCAGAGTCTGACCCCAGCAACGTCCCCGGGAGTGG...ACGGCCTTCATTGGTGCTGCAGCACTGGAAGCCCACGCGCACAGCCTCTTTCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CAA 90 bp CATCCCAACAGAGCCCTGCTGGCCCAAGGTCCTCTCCTCTTGACCCCAAGTGCTCCACTCCCGGGGACGTaGCTGGGGTCAGACTCTGCG +
Preference number: 5 (lower is better)
Translates to: HPNRALLAQGPLLLTPSAPLPGT*LGSDSA
Trigger: CGCAGAGTCTGACCCCAGCAACGTCCCCGGGAGTGG...AGCACTTGGGGTCAAGAGGAGAGGACCTTGGGCCAGCAGGGCTCTGTTGGGATG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CAA 90 bp TCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCCCTGCTGGCCCCCACTCCCGGGGACGTaGCTGGGGTCAGACTCTGCG +
Preference number: 5 (lower is better)
Translates to: SSVPSSLRSIIPTEPCWPPLPGT*LGSDSA
Trigger: CGCAGAGTCTGACCCCAGCAACGTCCCCGGGAGTGG...GGGCCAGCAGGGCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CAA 90 bp TCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCTGGGCCCCCCACTCCCGGGGACGTaGCTGGGGTCAGACTCTGCG +
Preference number: 5 (lower is better)
Translates to: SLQSLYKWRGLPVSLLGPPLPGT*LGSDSA
Trigger: CGCAGAGTCTGACCCCAGCAACGTCCCCGGGAGTGG...GGGGCCCAGGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGA
63% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CAA 90 bp CATCCCAACAGAGCCCTGCTGGCCCAAGGTCCTCTCCTCTTGACCCCAAGTGCTGTCTGGATCTCCTGGTaGGAGACCTGCAGGTGGGAG +
Preference number: 5 (lower is better)
Translates to: HPNRALLAQGPLLLTPSAVWISW*ETCRWE
Trigger: CTCCCACCTGCAGGTCTCCAACCAGGAGATCCAGAC...AGCACTTGGGGTCAAGAGGAGAGGACCTTGGGCCAGCAGGGCTCTGTTGGGATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CAA 90 bp GGCACAAACCACAGCGCCAGGAAGGGGAGAAAGGGAAGGCAACACCCCTGTCTGGTCTGGATCTCCTGGTaGGAGACCTGCAGGTGGGAG +
Preference number: 5 (lower is better)
Translates to: GTNHSARKGRKGRQHPCLVWISW*ETCRWE
Trigger: CTCCCACCTGCAGGTCTCCAACCAGGAGATCCAGAC...CAGACAGGGGTGTTGCCTTCCCTTTCTCCCCTTCCTGGCGCTGTGGTTTGTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CAA 90 bp CGCGTGGGCTTCCAGTGCTGCAGCACCAATGAAGGCCGTGGCACAGCTGTGGCCGAATGTCACCTCCCCTaGAGGGTTGTCATCCAAGTC +
Preference number: 5 (lower is better)
Translates to: RVGFQCCSTNEGRGTAVAECHLP*RVVIQV
Trigger: GACTTGGATGACAACCCTCAAGGGGAGGTGACATTC...GGCCACAGCTGTGCCACGGCCTTCATTGGTGCTGCAGCACTGGAAGCCCACGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CAA 90 bp ACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCATGGTCAGCCTTTAAGTCCAAGGCTGGGTaGATATGGTTGGTGAAGCCC +
Preference number: 5 (lower is better)
Translates to: TPRLSPSSPGLLPPWSAFKSKAG*IWLVKP
Trigger: GGGCTTCACCAACCATATCAACCCAGCCTTGGACTT...AAAGGCTGACCATGGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CAA 90 bp CATCCCAACAGAGCCCTGCTGGCCCAAGGTCCTCTCCTCTTGACCCCAAGTGCTCCGGTTGAGGCGCTGTaGCTTGATCAGCTCCAGGAT +
Preference number: 5 (lower is better)
Translates to: HPNRALLAQGPLLLTPSAPVEAL*LDQLQD
Trigger: ATCCTGGAGCTGATCAAGCAACAGCGCCTCAACCGG...AGCACTTGGGGTCAAGAGGAGAGGACCTTGGGCCAGCAGGGCTCTGTTGGGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CAA 90 bp ACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCATGGTCAGCCTTTGAATGTCACCTCCCCTaGAGGGTTGTCATCCAAGTC +
Preference number: 5 (lower is better)
Translates to: TPRLSPSSPGLLPPWSAFECHLP*RVVIQV
Trigger: GACTTGGATGACAACCCTCAAGGGGAGGTGACATTC...AAAGGCTGACCATGGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CAA 90 bp TCATTCCTAAAGCCTAAGAGAGCAGGACTCAGGCTGGAGGCCTCTGCCTGGCCAGCCATGTCCTGTCTCTaGTCTTCGGGGGCCTTCAGG +
Preference number: 5 (lower is better)
Translates to: SFLKPKRAGLRLEASAWPAMSCL*SSGAFR
Trigger: CCTGAAGGCCCCCGAAGACAAGAGACAGGACATGGC...TGGCCAGGCAGAGGCCTCCAGCCTGAGTCCTGCTCTCTTAGGCTTTAGGAATGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CAA 90 bp CCGAGCTCCCCAGGCCTCTTGCCCCCATGGTCAGCCTTTCATGGACCAGCTTTGAAGTCCAAGGCTGGGTaGATATGGTTGGTGAAGCCC +
Preference number: 5 (lower is better)
Translates to: PSSPGLLPPWSAFHGPALKSKAG*IWLVKP
Trigger: GGGCTTCACCAACCATATCAACCCAGCCTTGGACTT...CAAAGCTGGTCCATGAAAGGCTGACCATGGGGGCAAGAGGCCTGGGGAGCTCGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CAA 90 bp GACATGGTAGGGCCAAACCCCAGAGGCAGCAGCATGAGGCACAGGACGAGGCTGTTGAGGCGCTGTTGCTaGATCAGCTCCAGGATCTCA +
Preference number: 5 (lower is better)
Translates to: DMVGPNPRGSSMRHRTRLLRRCC*ISSRIS
Trigger: TGAGATCCTGGAGCTGATCAAGCAACAGCGCCTCAA...CAGCCTCGTCCTGTGCCTCATGCTGCTGCCTCTGGGGTTTGGCCCTACCATGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CAA 90 bp ACTAGACATGGTAGGGCCAAACCCCAGAGGCAGCAGCATGAGGCACAGGACGAGCCGGTTGAGGCGCTGTaGCTTGATCAGCTCCAGGAT +
Preference number: 5 (lower is better)
Translates to: TRHGRAKPQRQQHEAQDEPVEAL*LDQLQD
Trigger: ATCCTGGAGCTGATCAAGCAACAGCGCCTCAACCGG...CTCGTCCTGTGCCTCATGCTGCTGCCTCTGGGGTTTGGCCCTACCATGTCTAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CAA 90 bp GACATGGTAGGGCCAAACCCCAGAGGCAGCAGCATGAGGCACAGGACGAGGCTGGAATGTCACCTCCCCTaGAGGGTTGTCATCCAAGTC +
Preference number: 5 (lower is better)
Translates to: DMVGPNPRGSSMRHRTRLECHLP*RVVIQV
Trigger: GACTTGGATGACAACCCTCAAGGGGAGGTGACATTC...CAGCCTCGTCCTGTGCCTCATGCTGCTGCCTCTGGGGTTTGGCCCTACCATGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CAA 90 bp ACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCATGGTCAGCCTTTAGAGGGTTAAGGTGCTaGTCCTGTCTCTTGTCTTCG +
Preference number: 5 (lower is better)
Translates to: TPRLSPSSPGLLPPWSAFRGLRC*SCLLSS
Trigger: CGAAGACAAGAGACAGGACAAGCACCTTAACCCTCT...AAAGGCTGACCATGGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000074046.13
CDS CCA 90 bp TGGCCACACCTCCTCACAGTGAGAGCACTGGTGTTCAAGGCAGTGTaGCACAGACACCTCCTCACAGTGAGGGCACTGGTGTTCAAGGCA +
Preference number: 5 (lower is better)
Translates to: WPHLLTVRALVFKAV*HRHLLTVRALVFKA
Trigger: TGCCTTGAACACCAGTGCCCTCACTGTGAGGAGGTGTCTGTGCCACACTGCCTTGAACACCAGTGCTCTCACTGTGAGGAGGTGTGGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CAA 90 bp GACATGGTAGGGCCAAACCCCAGAGGCAGCAGCATGAGGCACAGGACGAGGCTGTGGGCCATCTCTGTTTaGATTGGACGATTCCCTCTG +
Preference number: 5 (lower is better)
Translates to: DMVGPNPRGSSMRHRTRLWAISV*IGRFPL
Trigger: CAGAGGGAATCGTCCAATCAAAACAGAGATGGCCCA...CAGCCTCGTCCTGTGCCTCATGCTGCTGCCTCTGGGGTTTGGCCCTACCATGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CAA 90 bp CCTGAAGACAGTCACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCCTGCTCTCGGACAACTaGCATAACCTTGTTGAAATC +
Preference number: 5 (lower is better)
Translates to: PEDSHSEALTELPRPLAPLLSDN*HNLVEI
Trigger: GATTTCAACAAGGTTATGCAAGTTGTCCGAGAGCAG...GGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGTGACTGTCTTCAGG
58% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CAA 90 bp CTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCCCTGCTGGCCCAAGGTTGAGGCGCTGTTGCTaGATCAGCTCCAGGATCTCA +
Preference number: 5 (lower is better)
Translates to: LCLAHCALSSQQSPAGPRLRRCC*ISSRIS
Trigger: TGAGATCCTGGAGCTGATCAAGCAACAGCGCCTCAA...CCTTGGGCCAGCAGGGCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CAA 90 bp ACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCATGGTCAGCCTTTAATTCCAACACCTCCTaGTTCTGTTTCAGGGCACTC +
Preference number: 5 (lower is better)
Translates to: TPRLSPSSPGLLPPWSAFNSNTS*FCFRAL
Trigger: GAGTGCCCTGAAACAGAACAAGGAGGTGTTGGAATT...AAAGGCTGACCATGGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CAA 90 bp GGCACAAACCACAGCGCCAGGAAGGGGAGAAAGGGAAGGCAACACCCCTGTCTGTGGGCCATCTCTGTTTaGATTGGACGATTCCCTCTG +
Preference number: 5 (lower is better)
Translates to: GTNHSARKGRKGRQHPCLWAISV*IGRFPL
Trigger: CAGAGGGAATCGTCCAATCAAAACAGAGATGGCCCA...CAGACAGGGGTGTTGCCTTCCCTTTCTCCCCTTCCTGGCGCTGTGGTTTGTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CAA 90 bp GGCACAAACCACAGCGCCAGGAAGGGGAGAAAGGGAAGGCAACACCCCTGTCTGACTTGCATAACCTTGTaGAAATCCTCGGCTGTCGCC +
Preference number: 5 (lower is better)
Translates to: GTNHSARKGRKGRQHPCLTCITL*KSSAVA
Trigger: GGCGACAGCCGAGGATTTCAACAAGGTTATGCAAGT...CAGACAGGGGTGTTGCCTTCCCTTTCTCCCCTTCCTGGCGCTGTGGTTTGTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CAA 90 bp ACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCATGGTCAGCCTTTCTGCTCTCGGACAACTaGCATAACCTTGTTGAAATC +
Preference number: 5 (lower is better)
Translates to: TPRLSPSSPGLLPPWSAFLLSDN*HNLVEI
Trigger: GATTTCAACAAGGTTATGCAAGTTGTCCGAGAGCAG...AAAGGCTGACCATGGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CAA 90 bp CCGAGCTCCCCAGGCCTCTTGCCCCCATGGTCAGCCTTTCATGGACCAGCTTTGAATTCCAACACCTCCTaGTTCTGTTTCAGGGCACTC +
Preference number: 5 (lower is better)
Translates to: PSSPGLLPPWSAFHGPALNSNTS*FCFRAL
Trigger: GAGTGCCCTGAAACAGAACAAGGAGGTGTTGGAATT...CAAAGCTGGTCCATGAAAGGCTGACCATGGGGGCAAGAGGCCTGGGGAGCTCGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CAA 90 bp TGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCCCTTTTTGGCTGCCTGGCTaGTGGGGATACCGCTGTGCT +
Preference number: 5 (lower is better)
Translates to: CCSLLCLAHCALSSQQSPFWLPG*WGYRCA
Trigger: AGCACAGCGGTATCCCCACAAGCCAGGCAGCCAAAA...AGGGCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS GCA 90 bp AGGGTTGTCATCCAAGTCACCGTAATGCAAAACCTTGTGGTTCAGTaGCAAGCGGCAGTGCCAGAACCTCTCTTGCCGACGACGGTTCCC +
Preference number: 5 (lower is better)
Translates to: RVVIQVTVMQNLVVQ*QAAVPEPLLPTTVP
Trigger: GGGAACCGTCGTCGGCAAGAGAGGTTCTGGCACTGCCGCTTGGCACTGAACCACAAGGTTTTGCATTACGGTGACTTGGATGACAACCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071699.11
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103088.10
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CAA 90 bp AGGCCCTCAATTAACAACGAGTTGACTGAGTTGGGCACTAGCACCTTCCTGGTCGTCTGGATCTCCTGGTaGGAGACCTGCAGGTGGGAG +
Preference number: 5 (lower is better)
Translates to: RPSINNELTELGTSTFLVVWISW*ETCRWE
Trigger: CTCCCACCTGCAGGTCTCCAACCAGGAGATCCAGAC...GACCAGGAAGGTGCTAGTGCCCAACTCAGTCAACTCGTTGTTAATTGAGGGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CAA 90 bp TACCACAATCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCGCCATGTCCTGTCTCTaGTCTTCGGGGGCCTTCAGG +
Preference number: 5 (lower is better)
Translates to: YHNHYRVCTSGVGCQCLSAMSCL*SSGAFR
Trigger: CCTGAAGGCCCCCGAAGACAAGAGACAGGACATGGC...GGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGATTGTGGTA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CAA 90 bp CATCCCAACAGAGCCCTGCTGGCCCAAGGTCCTCTCCTCTTGACCCCAAGTGCTGCTGGGTTGATATGGTaGGTGAAGCCCAGCATTTTA +
Preference number: 5 (lower is better)
Translates to: HPNRALLAQGPLLLTPSAAGLIW*VKPSIL
Trigger: TAAAATGCTGGGCTTCACCAACCATATCAACCCAGC...AGCACTTGGGGTCAAGAGGAGAGGACCTTGGGCCAGCAGGGCTCTGTTGGGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CAA 90 bp CTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCCCTGCTGGCCCAAGGAATTCCAACACCTCCTaGTTCTGTTTCAGGGCACTC +
Preference number: 5 (lower is better)
Translates to: LCLAHCALSSQQSPAGPRNSNTS*FCFRAL
Trigger: GAGTGCCCTGAAACAGAACAAGGAGGTGTTGGAATT...CCTTGGGCCAGCAGGGCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CAA 90 bp GCGCTCTATCATCCCAACAGAGCCCTGCTGGCCCAAGGTCCTCTCCTCTTGACCAATTCCAACACCTCCTaGTTCTGTTTCAGGGCACTC +
Preference number: 5 (lower is better)
Translates to: ALYHPNRALLAQGPLLLTNSNTS*FCFRAL
Trigger: GAGTGCCCTGAAACAGAACAAGGAGGTGTTGGAATT...GGTCAAGAGGAGAGGACCTTGGGCCAGCAGGGCTCTGTTGGGATGATAGAGCGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CAA 90 bp CTTCTGCTGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACATTTTGGCTGCCTGGCTaGTGGGGATACCGCTGTGCT +
Preference number: 5 (lower is better)
Translates to: LLLLLSSVPSSLRSIIPTFWLPG*WGYRCA
Trigger: AGCACAGCGGTATCCCCACAAGCCAGGCAGCCAAAA...TGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCAGCAGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS GCA 90 bp GGATCTGAATGTTCTCCAAGTCCAGAAGCCGCAGCTTCATCTCCATaGTCAGCAGCGTGTCCAAGTCGCTCTTGGTTAGCTCGCTGGACA +
Preference number: 5 (lower is better)
Translates to: GSECSPSPEAAASSP*SAACPSRSWLARWT
Trigger: TGTCCAGCGAGCTAACCAAGAGCGACTTGGACACGCTGCTGAGCATGGAGATGAAGCTGCGGCTTCTGGACTTGGAGAACATTCAGATCC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS CCA 90 bp CATGGTTCAGGATTATGGACCGAAGGTGCTTCTGTGCAAAGGCATTaGCCATGTCCTGTCTCTTGTCTTCGGGGGCCTTCAGGAACAGCG +
Preference number: 5 (lower is better)
Translates to: HGSGLWTEGASVQRH*PCPVSCLRGPSGTA
Trigger: CGCTGTTCCTGAAGGCCCCCGAAGACAAGAGACAGGACATGGCCAATGCCTTTGCACAGAAGCACCTTCGGTCCATAATCCTGAACCATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000071699.11
ENSMUST00000094329.11
ENSMUST00000103088.10
ENSMUST00000103091.9
ENSMUST00000137188.2
CDS CCA 90 bp TATACATGGCCTTGCGCTTTTCAGTCCCACTCCCGGGGACGTTGCTaGGGTCAGACTCTGCGTCGAAGGCAATCCTCCTCAGTTCAAATA +
Preference number: 5 (lower is better)
Translates to: YTWPCAFQSHSRGRC*GQTLRRRQSSSVQI
Trigger: TATTTGAACTGAGGAGGATTGCCTTCGACGCAGAGTCTGACCCCAGCAACGTCCCCGGGAGTGGGACTGAAAAGCGCAAGGCCATGTATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000071699.11
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103088.10
ENSMUST00000103091.9
CDS-3UTR CAA 90 bp ATCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCTGGGCCCTTCTGTGCAAAGGCATaGGCCATGTCCTGTCTCTTG +
Preference number: 5 (lower is better)
Translates to: ITTEFVQVAWAASVSPGPFCAKA*AMSCLL
Trigger: CAAGAGACAGGACATGGCCAATGCCTTTGCACAGAA...GGGCCCAGGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CAA 90 bp TCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCTGGGCCCCGCTGGGTTGATATGGTaGGTGAAGCCCAGCATTTTA +
Preference number: 5 (lower is better)
Translates to: SLQSLYKWRGLPVSLLGPAGLIW*VKPSIL
Trigger: TAAAATGCTGGGCTTCACCAACCATATCAACCCAGC...GGGGCCCAGGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CAA 90 bp TGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCCCTAAGTCCAAGGCTGGGTaGATATGGTTGGTGAAGCCC +
Preference number: 5 (lower is better)
Translates to: CCSLLCLAHCALSSQQSPKSKAG*IWLVKP
Trigger: GGGCTTCACCAACCATATCAACCCAGCCTTGGACTT...AGGGCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CAA 90 bp TCATTCCTAAAGCCTAAGAGAGCAGGACTCAGGCTGGAGGCCTCTGCCTGGCCAACTTGCATAACCTTGTaGAAATCCTCGGCTGTCGCC +
Preference number: 5 (lower is better)
Translates to: SFLKPKRAGLRLEASAWPTCITL*KSSAVA
Trigger: GGCGACAGCCGAGGATTTCAACAAGGTTATGCAAGT...TGGCCAGGCAGAGGCCTCCAGCCTGAGTCCTGCTCTCTTAGGCTTTAGGAATGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CAA 90 bp GAGGGGCCTGTAACTGAGGGGGCATGGGAATATTGTGCCTCAGCAAGGAAGAGATTGAGGCGCTGTTGCTaGATCAGCTCCAGGATCTCA +
Preference number: 5 (lower is better)
Translates to: EGPVTEGAWEYCASARKRLRRCC*ISSRIS
Trigger: TGAGATCCTGGAGCTGATCAAGCAACAGCGCCTCAA...TCTCTTCCTTGCTGAGGCACAATATTCCCATGCCCCCTCAGTTACAGGCCCCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CAA 90 bp TGCTGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCTTGAGGCGCTGTTGCTaGATCAGCTCCAGGATCTCA +
Preference number: 5 (lower is better)
Translates to: CCCSLLCLAHCALSSQQSLRRCC*ISSRIS
Trigger: TGAGATCCTGGAGCTGATCAAGCAACAGCGCCTCAA...GCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CAA 90 bp ACCACAATCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCTCCGGTTGAGGCGCTGTaGCTTGATCAGCTCCAGGAT +
Preference number: 5 (lower is better)
Translates to: TTITTEFVQVAWAASVSPPVEAL*LDQLQD
Trigger: ATCCTGGAGCTGATCAAGCAACAGCGCCTCAACCGG...AGGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGATTGTGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CAA 90 bp CTGCAAGGACAAGAGAGACGGGTGTCTCTAGAGACTAGACATGGTAGGGCCAAACCGGTTGAGGCGCTGTaGCTTGATCAGCTCCAGGAT +
Preference number: 5 (lower is better)
Translates to: LQGQERRVSLETRHGRAKPVEAL*LDQLQD
Trigger: ATCCTGGAGCTGATCAAGCAACAGCGCCTCAACCGG...TTTGGCCCTACCATGTCTAGTCTCTAGAGACACCCGTCTCTCTTGTCCTTGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CAA 90 bp TGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCCCTGAATGTCACCTCCCCTaGAGGGTTGTCATCCAAGTC +
Preference number: 5 (lower is better)
Translates to: CCSLLCLAHCALSSQQSPECHLP*RVVIQV
Trigger: GACTTGGATGACAACCCTCAAGGGGAGGTGACATTC...AGGGCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CAA 90 bp GGGCCTGTAACTGAGGGGGCATGGGAATATTGTGCCTCAGCAAGGAAGAGAGAGGAATGTCACCTCCCCTaGAGGGTTGTCATCCAAGTC +
Preference number: 5 (lower is better)
Translates to: GPVTEGAWEYCASARKREECHLP*RVVIQV
Trigger: GACTTGGATGACAACCCTCAAGGGGAGGTGACATTC...CTCTCTCTTCCTTGCTGAGGCACAATATTCCCATGCCCCCTCAGTTACAGGCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CAA 90 bp TGCTGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCGAATGTCACCTCCCCTaGAGGGTTGTCATCCAAGTC +
Preference number: 5 (lower is better)
Translates to: CCCSLLCLAHCALSSQQSECHLP*RVVIQV
Trigger: GACTTGGATGACAACCCTCAAGGGGAGGTGACATTC...GCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CAA 90 bp ACTCCGAGGCTCTCACCGAGCTCCCCAGGCCTCTTGCCCCCATGGTCAGCCTTTCAGTACTCATACTTGTaGGGAGCAATGAAATTCAGT +
Preference number: 5 (lower is better)
Translates to: TPRLSPSSPGLLPPWSAFQYSYL*GAMKFS
Trigger: ACTGAATTTCATTGCTCCCAACAAGTATGAGTACTG...AAAGGCTGACCATGGGGGCAAGAGGCCTGGGGAGCTCGGTGAGAGCCTCGGAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS GCA 90 bp GGACGATTCCCTCTGATCACATGGTTCAGGATTATGGACCGAAGGTaGTTCTGTGCAAAGGCATTGGCCATGTCAGTGACGGGCAGGTCT +
Preference number: 5 (lower is better)
Translates to: GRFPLITWFRIMDRR*FCAKALAMSVTGRS
Trigger: AGACCTGCCCGTCACTGACATGGCCAATGCCTTTGCACAGAAGCACCTTCGGTCCATAATCCTGAACCATGTGATCAGAGGGAATCGTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074046.13
CDS CCA 90 bp GTCCAGCGCCAGCATTCCAGGAGGAGTCTGGGTGAAGTCCAAGGCTaGGTTGATATGGTTGGTGAAGCCCAGCATTTTATAGTCCTTGGT +
Preference number: 5 (lower is better)
Translates to: VQRQHSRRSLGEVQG*VDMVGEAQHFIVLG
Trigger: ACCAAGGACTATAAAATGCTGGGCTTCACCAACCATATCAACCCAGCCTTGGACTTCACCCAGACTCCTCCTGGAATGCTGGCGCTGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000071699.11
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103088.10
ENSMUST00000103091.9
CDS CCA 90 bp ATCTCAGGCTGTATCTTCTCTCGAAGCTCCACAATTGGTGGGGACTaGAAATCATCCTGGCTCATCCTCTCAGACTGGCGCAACCGCAGA +
Preference number: 5 (lower is better)
Translates to: ISGCIFSRSSTIGGD*KSSWLILSDWRNRR
Trigger: TCTGCGGTTGCGCCAGTCTGAGAGGATGAGCCAGGATGATTTCCAGTCCCCACCAATTGTGGAGCTTCGAGAGAAGATACAGCCTGAGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071699.11
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103088.10
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CAA 90 bp CATGGACCAGCTTTGGCCCACATGGGCTCTCCAACAAACCAGAGAGGAGACTTGTGGGCCATCTCTGTTTaGATTGGACGATTCCCTCTG +
Preference number: 5 (lower is better)
Translates to: HGPALAHMGSPTNQRGDLWAISV*IGRFPL
Trigger: CAGAGGGAATCGTCCAATCAAAACAGAGATGGCCCA...CAAGTCTCCTCTCTGGTTTGTTGGAGAGCCCATGTGGGCCAAAGCTGGTCCATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CAA 90 bp CATCCCAACAGAGCCCTGCTGGCCCAAGGTCCTCTCCTCTTGACCCCAAGTGCTTCATTGGGATCCATCTaGGTCATCATTCTTTCTTCC +
Preference number: 5 (lower is better)
Translates to: HPNRALLAQGPLLLTPSASLGSI*VIILSS
Trigger: GGAAGAAAGAATGATGACCAAGATGGATCCCAATGA...AGCACTTGGGGTCAAGAGGAGAGGACCTTGGGCCAGCAGGGCTCTGTTGGGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CAA 90 bp CTTCTGCTGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAAAGTCCAAGGCTGGGTaGATATGGTTGGTGAAGCCC +
Preference number: 5 (lower is better)
Translates to: LLLLLSSVPSSLRSIIPTKSKAG*IWLVKP
Trigger: GGGCTTCACCAACCATATCAACCCAGCCTTGGACTT...TGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCAGCAGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CAA 90 bp GAGGGGCCTGTAACTGAGGGGGCATGGGAATATTGTGCCTCAGCAAGGAAGAGAACTTGCATAACCTTGTaGAAATCCTCGGCTGTCGCC +
Preference number: 5 (lower is better)
Translates to: EGPVTEGAWEYCASARKRTCITL*KSSAVA
Trigger: GGCGACAGCCGAGGATTTCAACAAGGTTATGCAAGT...TCTCTTCCTTGCTGAGGCACAATATTCCCATGCCCCCTCAGTTACAGGCCCCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS TCA 90 bp CGCTCTTGGTTAGCTCGCTGGACATATCCTTCCCCAGGAGAGCGCTaGGTCCATCAATCCAGATGCAGTACTCATACTTGTTGGGAGCAA +
Preference number: 5 (lower is better)
Translates to: RSWLARWTYPSPGER*VHQSRCSTHTCWEQ
Trigger: TTGCTCCCAACAAGTATGAGTACTGCATCTGGATTGATGGACTCAGCGCTCTCCTGGGGAAGGATATGTCCAGCGAGCTAACCAAGAGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CAA 90 bp ACTAGACATGGTAGGGCCAAACCCCAGAGGCAGCAGCATGAGGCACAGGACGAGTCATTGGGATCCATCTaGGTCATCATTCTTTCTTCC +
Preference number: 5 (lower is better)
Translates to: TRHGRAKPQRQQHEAQDESLGSI*VIILSS
Trigger: GGAAGAAAGAATGATGACCAAGATGGATCCCAATGA...CTCGTCCTGTGCCTCATGCTGCTGCCTCTGGGGTTTGGCCCTACCATGTCTAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CAA 90 bp TCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCTGGGCCCCTCATTGGGATCCATCTaGGTCATCATTCTTTCTTCC +
Preference number: 5 (lower is better)
Translates to: SLQSLYKWRGLPVSLLGPSLGSI*VIILSS
Trigger: GGAAGAAAGAATGATGACCAAGATGGATCCCAATGA...GGGGCCCAGGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CAA 90 bp GAGGGGCCTGTAACTGAGGGGGCATGGGAATATTGTGCCTCAGCAAGGAAGAGAGCTGGGTTGATATGGTaGGTGAAGCCCAGCATTTTA +
Preference number: 5 (lower is better)
Translates to: EGPVTEGAWEYCASARKRAGLIW*VKPSIL
Trigger: TAAAATGCTGGGCTTCACCAACCATATCAACCCAGC...TCTCTTCCTTGCTGAGGCACAATATTCCCATGCCCCCTCAGTTACAGGCCCCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CAA 90 bp TACCACAATCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCAAGTCCAAGGCTGGGTaGATATGGTTGGTGAAGCCC +
Preference number: 5 (lower is better)
Translates to: YHNHYRVCTSGVGCQCLSKSKAG*IWLVKP
Trigger: GGGCTTCACCAACCATATCAACCCAGCCTTGGACTT...GGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGATTGTGGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CAA 90 bp TTCTGCTGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGACTTGCATAACCTTGTaGAAATCCTCGGCTGTCGCC +
Preference number: 5 (lower is better)
Translates to: FCCCSLLCLAHCALSSQQTCITL*KSSAVA
Trigger: GGCGACAGCCGAGGATTTCAACAAGGTTATGCAAGT...CTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCAGCAGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CAA 90 bp AAGCAGGAGCTCAAGGCCTGTTCTTGCCTGAGCCACCTGAAGACAGTCACTCCGCTGCTCTCGGACAACTaGCATAACCTTGTTGAAATC +
Preference number: 5 (lower is better)
Translates to: KQELKACSCLSHLKTVTPLLSDN*HNLVEI
Trigger: GATTTCAACAAGGTTATGCAAGTTGTCCGAGAGCAG...CGGAGTGACTGTCTTCAGGTGGCTCAGGCAAGAACAGGCCTTGAGCTCCTGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CAA 90 bp CTGCAAGGACAAGAGAGACGGGTGTCTCTAGAGACTAGACATGGTAGGGCCAAATTGAGGCGCTGTTGCTaGATCAGCTCCAGGATCTCA +
Preference number: 5 (lower is better)
Translates to: LQGQERRVSLETRHGRAKLRRCC*ISSRIS
Trigger: TGAGATCCTGGAGCTGATCAAGCAACAGCGCCTCAA...TTTGGCCCTACCATGTCTAGTCTCTAGAGACACCCGTCTCTCTTGTCCTTGCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CAA 90 bp GGCTCTCCAACAAACCAGAGAGGAGACTTGAAAGGAAAGGGGATGGCTGTCAGTTTGAGGCGCTGTTGCTaGATCAGCTCCAGGATCTCA +
Preference number: 5 (lower is better)
Translates to: GSPTNQRGDLKGKGMAVSLRRCC*ISSRIS
Trigger: TGAGATCCTGGAGCTGATCAAGCAACAGCGCCTCAA...ACTGACAGCCATCCCCTTTCCTTTCAAGTCTCCTCTCTGGTTTGTTGGAGAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CAA 90 bp GAGGGGCCTGTAACTGAGGGGGCATGGGAATATTGTGCCTCAGCAAGGAAGAGAAATTCCAACACCTCCTaGTTCTGTTTCAGGGCACTC +
Preference number: 5 (lower is better)
Translates to: EGPVTEGAWEYCASARKRNSNTS*FCFRAL
Trigger: GAGTGCCCTGAAACAGAACAAGGAGGTGTTGGAATT...TCTCTTCCTTGCTGAGGCACAATATTCCCATGCCCCCTCAGTTACAGGCCCCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CAA 90 bp CATCCCAACAGAGCCCTGCTGGCCCAAGGTCCTCTCCTCTTGACCCCAAGTGCTCTTACCTCATACTTGTaGGGAGCAATGAAATTCAGT +
Preference number: 5 (lower is better)
Translates to: HPNRALLAQGPLLLTPSALTSYL*GAMKFS
Trigger: ACTGAATTTCATTGCTCCCAACAAGTATGAGGTAAG...AGCACTTGGGGTCAAGAGGAGAGGACCTTGGGCCAGCAGGGCTCTGTTGGGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CAA 90 bp GGCACAAACCACAGCGCCAGGAAGGGGAGAAAGGGAAGGCAACACCCCTGTCTGCAGTACTCATACTTGTaGGGAGCAATGAAATTCAGT +
Preference number: 5 (lower is better)
Translates to: GTNHSARKGRKGRQHPCLQYSYL*GAMKFS
Trigger: ACTGAATTTCATTGCTCCCAACAAGTATGAGTACTG...CAGACAGGGGTGTTGCCTTCCCTTTCTCCCCTTCCTGGCGCTGTGGTTTGTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CAA 90 bp AGGCCCTCAATTAACAACGAGTTGACTGAGTTGGGCACTAGCACCTTCCTGGTCTTCTGTGCAAAGGCATaGGCCATGTCCTGTCTCTTG +
Preference number: 5 (lower is better)
Translates to: RPSINNELTELGTSTFLVFCAKA*AMSCLL
Trigger: CAAGAGACAGGACATGGCCAATGCCTTTGCACAGAA...GACCAGGAAGGTGCTAGTGCCCAACTCAGTCAACTCGTTGTTAATTGAGGGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CAA 90 bp AGGCCCTCAATTAACAACGAGTTGACTGAGTTGGGCACTAGCACCTTCCTGGTCTGGGCCATCTCTGTTTaGATTGGACGATTCCCTCTG +
Preference number: 5 (lower is better)
Translates to: RPSINNELTELGTSTFLVWAISV*IGRFPL
Trigger: CAGAGGGAATCGTCCAATCAAAACAGAGATGGCCCA...GACCAGGAAGGTGCTAGTGCCCAACTCAGTCAACTCGTTGTTAATTGAGGGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CAA 90 bp ACCACAATCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCTACTTGCATAACCTTGTaGAAATCCTCGGCTGTCGCC +
Preference number: 5 (lower is better)
Translates to: TTITTEFVQVAWAASVSPTCITL*KSSAVA
Trigger: GGCGACAGCCGAGGATTTCAACAAGGTTATGCAAGT...AGGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGATTGTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CAA 90 bp TGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCCCTCTGCTCTCGGACAACTaGCATAACCTTGTTGAAATC +
Preference number: 5 (lower is better)
Translates to: CCSLLCLAHCALSSQQSPLLSDN*HNLVEI
Trigger: GATTTCAACAAGGTTATGCAAGTTGTCCGAGAGCAG...AGGGCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CAA 90 bp CACACTGAAATGAAGGCTGTCAGGCCGCTCCTCACCCTTGGGACAGGGAATAAGCTGCTCTCGGACAACTaGCATAACCTTGTTGAAATC +
Preference number: 5 (lower is better)
Translates to: HTEMKAVRPLLTLGTGNKLLSDN*HNLVEI
Trigger: GATTTCAACAAGGTTATGCAAGTTGTCCGAGAGCAG...CTTATTCCCTGTCCCAAGGGTGAGGAGCGGCCTGACAGCCTTCATTTCAGTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103091.9
CDS CCA 90 bp AGATCCATCTGGCTCCACAGCCTGACCAGGTTGGCTCCAGGTAACTaGGATTCAACTCTCCTGGGAAAAGTAACTGCGAGATTACAAAGA +
Preference number: 5 (lower is better)
Translates to: RSIWLHSLTRLAPGN*DSTLLGKVTARLQR
Trigger: TCTTTGTAATCTCGCAGTTACTTTTCCCAGGAGAGTTGAATCCCAGTTACCTGGAGCCAACCTGGTCAGGCTGTGGAGCCAGATGGATCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CAA 90 bp ATTAGACCTTGTCTCAGAAAAACAAAACTTAAGGCAGAGGCTCCCAGAATGCACGCCATGTCCTGTCTCTaGTCTTCGGGGGCCTTCAGG +
Preference number: 5 (lower is better)
Translates to: IRPCLRKTKLKAEAPRMHAMSCL*SSGAFR
Trigger: CCTGAAGGCCCCCGAAGACAAGAGACAGGACATGGC...GTGCATTCTGGGAGCCTCTGCCTTAAGTTTTGTTTTTCTGAGACAAGGTCTAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CAA 90 bp TTAGACCTTGTCTCAGAAAAACAAAACTTAAGGCAGAGGCTCCCAGAATGCACAGCCATGTCCTGTCTCTaGTCTTCGGGGGCCTTCAGG +
Preference number: 5 (lower is better)
Translates to: LDLVSEKQNLRQRLPECTAMSCL*SSGAFR
Trigger: CCTGAAGGCCCCCGAAGACAAGAGACAGGACATGGC...TGTGCATTCTGGGAGCCTCTGCCTTAAGTTTTGTTTTTCTGAGACAAGGTCTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CAA 90 bp TACCACAATCACTACAGAGTTTGTACAAGTGGCGTGGGCTGCCAGTGTCTCTCCGCTGGGTTGATATGGTaGGTGAAGCCCAGCATTTTA +
Preference number: 5 (lower is better)
Translates to: YHNHYRVCTSGVGCQCLSAGLIW*VKPSIL
Trigger: TAAAATGCTGGGCTTCACCAACCATATCAACCCAGC...GGAGAGACACTGGCAGCCCACGCCACTTGTACAAACTCTGTAGTGATTGTGGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CAA 90 bp AGGCCCTCAATTAACAACGAGTTGACTGAGTTGGGCACTAGCACCTTCCTGGTCGCTGGGTTGATATGGTaGGTGAAGCCCAGCATTTTA +
Preference number: 5 (lower is better)
Translates to: RPSINNELTELGTSTFLVAGLIW*VKPSIL
Trigger: TAAAATGCTGGGCTTCACCAACCATATCAACCCAGC...GACCAGGAAGGTGCTAGTGCCCAACTCAGTCAACTCGTTGTTAATTGAGGGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CAA 90 bp ACTCAGAGTTGCAATTTAGTTAAAGAAGAAAACTCAGCTGGGCTTGGTGGCGCACCGGTTGAGGCGCTGTaGCTTGATCAGCTCCAGGAT +
Preference number: 5 (lower is better)
Translates to: TQSCNLVKEENSAGLGGAPVEAL*LDQLQD
Trigger: ATCCTGGAGCTGATCAAGCAACAGCGCCTCAACCGG...TGCGCCACCAAGCCCAGCTGAGTTTTCTTCTTTAACTAAATTGCAACTCTGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103088.10
CDS-3UTR CAA 90 bp TGCTGCTCTCTTCTGTGCCTAGCTCACTGCGCTCTATCATCCCAACAGAGCCCTCTTACCTCATACTTGTaGGGAGCAATGAAATTCAGT +
Preference number: 5 (lower is better)
Translates to: CCSLLCLAHCALSSQQSPLTSYL*GAMKFS
Trigger: ACTGAATTTCATTGCTCCCAACAAGTATGAGGTAAG...AGGGCTCTGTTGGGATGATAGAGCGCAGTGAGCTAGGCACAGAAGAGAGCAGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CAA 90 bp GAGGGGCCTGTAACTGAGGGGGCATGGGAATATTGTGCCTCAGCAAGGAAGAGACAGTACTCATACTTGTaGGGAGCAATGAAATTCAGT +
Preference number: 5 (lower is better)
Translates to: EGPVTEGAWEYCASARKRQYSYL*GAMKFS
Trigger: ACTGAATTTCATTGCTCCCAACAAGTATGAGTACTG...TCTCTTCCTTGCTGAGGCACAATATTCCCATGCCCCCTCAGTTACAGGCCCCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CAA 90 bp GGCTCTCCAACAAACCAGAGAGGAGACTTGAAAGGAAAGGGGATGGCTGTCAGTTCATTGGGATCCATCTaGGTCATCATTCTTTCTTCC +
Preference number: 5 (lower is better)
Translates to: GSPTNQRGDLKGKGMAVSSLGSI*VIILSS
Trigger: GGAAGAAAGAATGATGACCAAGATGGATCCCAATGA...ACTGACAGCCATCCCCTTTCCTTTCAAGTCTCCTCTCTGGTTTGTTGGAGAGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
CDS-3UTR CAA 90 bp ATTAGACCTTGTCTCAGAAAAACAAAACTTAAGGCAGAGGCTCCCAGAATGCACGCACAAAGTGAAAGGTaGGGTGTGGTGGCGCAAAGT +
Preference number: 5 (lower is better)
Translates to: IRPCLRKTKLKAEAPRMHAQSER*GVVAQS
Trigger: ACTTTGCGCCACCACACCCAACCTTTCACTTTGTGC...GTGCATTCTGGGAGCCTCTGCCTTAAGTTTTGTTTTTCTGAGACAAGGTCTAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CAA 90 bp GGCTCTCCAACAAACCAGAGAGGAGACTTGAAAGGAAAGGGGATGGCTGTCAGTCAGTACTCATACTTGTaGGGAGCAATGAAATTCAGT +
Preference number: 5 (lower is better)
Translates to: GSPTNQRGDLKGKGMAVSQYSYL*GAMKFS
Trigger: ACTGAATTTCATTGCTCCCAACAAGTATGAGTACTG...ACTGACAGCCATCCCCTTTCCTTTCAAGTCTCCTCTCTGGTTTGTTGGAGAGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS-3UTR CAA 90 bp ATTAGACCTTGTCTCAGAAAAACAAAACTTAAGGCAGAGGCTCCCAGAATGCACTTCTGTGCAAAGGCATaGGCCATGTCCTGTCTCTTG +
Preference number: 5 (lower is better)
Translates to: IRPCLRKTKLKAEAPRMHFCAKA*AMSCLL
Trigger: CAAGAGACAGGACATGGCCAATGCCTTTGCACAGAA...GTGCATTCTGGGAGCCTCTGCCTTAAGTTTTGTTTTTCTGAGACAAGGTCTAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CAA 90 bp TTAGACCTTGTCTCAGAAAAACAAAACTTAAGGCAGAGGCTCCCAGAATGCACATGGGCCATCTCTGTTTaGATTGGACGATTCCCTCTG +
Preference number: 5 (lower is better)
Translates to: LDLVSEKQNLRQRLPECTWAISV*IGRFPL
Trigger: CAGAGGGAATCGTCCAATCAAAACAGAGATGGCCCA...TGTGCATTCTGGGAGCCTCTGCCTTAAGTTTTGTTTTTCTGAGACAAGGTCTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS-3UTR CAA 90 bp ACTCAGAGTTGCAATTTAGTTAAAGAAGAAAACTCAGCTGGGCTTGGTGGCGCATCATTGGGATCCATCTaGGTCATCATTCTTTCTTCC +
Preference number: 5 (lower is better)
Translates to: TQSCNLVKEENSAGLGGASLGSI*VIILSS
Trigger: GGAAGAAAGAATGATGACCAAGATGGATCCCAATGA...TGCGCCACCAAGCCCAGCTGAGTTTTCTTCTTTAACTAAATTGCAACTCTGAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103088.10
CDS-3UTR CAA 90 bp TTAGACCTTGTCTCAGAAAAACAAAACTTAAGGCAGAGGCTCCCAGAATGCACACTGCTCTCGGACAACTaGCATAACCTTGTTGAAATC +
Preference number: 5 (lower is better)
Translates to: LDLVSEKQNLRQRLPECTLLSDN*HNLVEI
Trigger: GATTTCAACAAGGTTATGCAAGTTGTCCGAGAGCAG...TGTGCATTCTGGGAGCCTCTGCCTTAAGTTTTGTTTTTCTGAGACAAGGTCTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS GCA 72 bp TCGGGTCTGCTCCGTGACGTAGAGCTGAGGCCCATCTaGATAGCGGAGGGTGTAGTACTCCGGGTTCGGCAG +
Preference number: 6 (lower is better)
Translates to: SGLLRDVELRPI*IAEGVVLRVRQ
Trigger: CTGCCGAACCCGGAGTACTACACCCTCCGCTATGCAGATGGGCCTCAGCTCTACGTCACGGAGCAGACCCGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000071699.11
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103088.10
ENSMUST00000103091.9
ENSMUST00000133205.8
CDS CCA 72 bp CCTTGCGCTTTTCAGTCCCACTCCCGGGGACGTTGCTaGGGTCAGACTCTGCGTCGAAGGCAATCCTCCTCA +
Preference number: 6 (lower is better)
Translates to: PCAFQSHSRGRC*GQTLRRRQSSS
Trigger: TGAGGAGGATTGCCTTCGACGCAGAGTCTGACCCCAGCAACGTCCCCGGGAGTGGGACTGAAAAGCGCAAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000071699.11
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103088.10
ENSMUST00000103091.9
CDS TCA 72 bp TGGGGATACCGCTGTGCTGGCCACACCTCCTCACAGTaGGAGCACTGGTGTTCAAGGCAGTGTGGCACAGAC +
Preference number: 6 (lower is better)
Translates to: WGYRCAGHTSSQ*EHWCSRQCGTD
Trigger: GTCTGTGCCACACTGCCTTGAACACCAGTGCTCTCACTGTGAGGAGGTGTGGCCAGCACAGCGGTATCCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS GCA 72 bp TCCATTTTGGCTGCCTGGCTTGTGGGGATACCGCTGTaGTGGCCACACCTCCTCACAGTGAGAGCACTGGTG +
Preference number: 6 (lower is better)
Translates to: SILAAWLVGIPL*WPHLLTVRALV
Trigger: CACCAGTGCTCTCACTGTGAGGAGGTGTGGCCAGCACAGCGGTATCCCCACAAGCCAGGCAGCCAAAATGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS CAA 72 bp GTGGTTCAGTGCCAAGCGGCAGTGCCAGAACCTCTCTaGCCGACGACGGTTCCCGATTTTCCGGAAGCTGCT +
Preference number: 6 (lower is better)
Translates to: VVQCQAAVPEPL*PTTVPDFPEAA
Trigger: AGCAGCTTCCGGAAAATCGGGAACCGTCGTCGGCAAGAGAGGTTCTGGCACTGCCGCTTGGCACTGAACCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071699.11
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103088.10
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS CAA 90 bp CCCTCCCTGTGCCAGGCCAGCTGCTCTAAGGCACAAAGTGAAAGGTaGGGTGTGGTGGCGCAAAGTTCTAATCCCAGCCCTCTGAAGGCA +
Preference number: 6 (lower is better)
Translates to: PSLCQASCSKAQSER*GVVAQSSNPSPLKA
Trigger: TGCCTTCAGAGGGCTGGGATTAGAACTTTGCGCCACCACACCCAACCTTTCACTTTGTGCCTTAGAGCAGCTGGCCTGGCACAGGGAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS CAA 90 bp AGCCGCAGCTTCATCTCCATGCTCAGCAGCGTGTCCAAGTCGCTCTaGGTTAGCTCGCTGGACATATCCTTCCCCAGGAGAGCGCTGAGT +
Preference number: 6 (lower is better)
Translates to: SRSFISMLSSVSKSL*VSSLDISFPRRALS
Trigger: ACTCAGCGCTCTCCTGGGGAAGGATATGTCCAGCGAGCTAACCAAGAGCGACTTGGACACGCTGCTGAGCATGGAGATGAAGCTGCGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS TCA 72 bp TGCATAGCGGAGGGTGTAGTACTCCGGGTTCGGCAGTaGCCACCCATCGCACACCTCCTTGATGATGGATGC +
Preference number: 6 (lower is better)
Translates to: CIAEGVVLRVRQ*PPIAHLLDDGC
Trigger: GCATCCATCATCAAGGAGGTGTGCGATGGGTGGTCACTGCCGAACCCGGAGTACTACACCCTCCGCTATGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000071699.11
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103088.10
ENSMUST00000103091.9
ENSMUST00000133205.8
CDS CCA 72 bp CTCCTCACAGTGAGAGCACTGGTGTTCAAGGCAGTGTaGCACAGACACCTCCTCACAGTGAGGGCACTGGTG +
Preference number: 6 (lower is better)
Translates to: LLTVRALVFKAV*HRHLLTVRALV
Trigger: CACCAGTGCCCTCACTGTGAGGAGGTGTCTGTGCCACACTGCCTTGAACACCAGTGCTCTCACTGTGAGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS CCA 72 bp ATTTTGGCTGCCTGGCTTGTGGGGATACCGCTGTGCTaGCCACACCTCCTCACAGTGAGAGCACTGGTGTTC +
Preference number: 6 (lower is better)
Translates to: ILAAWLVGIPLC*PHLLTVRALVF
Trigger: GAACACCAGTGCTCTCACTGTGAGGAGGTGTGGCCAGCACAGCGGTATCCCCACAAGCCAGGCAGCCAAAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS CAA 72 bp AGGGGCAGATCCATCTGGCTCCACAGCCTGACCAGGTaGGCTCCAGGTAACTGGGATTCAACTCTCCTGGGA +
Preference number: 6 (lower is better)
Translates to: RGRSIWLHSLTR*APGNWDSTLLG
Trigger: TCCCAGGAGAGTTGAATCCCAGTTACCTGGAGCCAACCTGGTCAGGCTGTGGAGCCAGATGGATCTGCCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS CCA 72 bp GCCAGGCCAGCTGCTCTAAGGCACAAAGTGAAAGGTTaGGTGTGGTGGCGCAAAGTTCTAATCCCAGCCCTC +
Preference number: 6 (lower is better)
Translates to: ARPAALRHKVKG*VWWRKVLIPAL
Trigger: GAGGGCTGGGATTAGAACTTTGCGCCACCACACCCAACCTTTCACTTTGTGCCTTAGAGCAGCTGGCCTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS CCA 72 bp AATTGGGAGTCCCTTGTTAGGAGGGGCAGATCCATCTaGCTCCACAGCCTGACCAGGTTGGCTCCAGGTAAC +
Preference number: 6 (lower is better)
Translates to: NWESLVRRGRSI*LHSLTRLAPGN
Trigger: GTTACCTGGAGCCAACCTGGTCAGGCTGTGGAGCCAGATGGATCTGCCCCTCCTAACAAGGGACTCCCAATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS CAA 72 bp CTGCTGCCCTCGCATAGCCGGTTGAGGCGCTGTTGCTaGATCAGCTCCAGGATCTCAGGCTGTATCTTCTCT +
Preference number: 6 (lower is better)
Translates to: LLPSHSRLRRCC*ISSRISGCIFS
Trigger: AGAGAAGATACAGCCTGAGATCCTGGAGCTGATCAAGCAACAGCGCCTCAACCGGCTATGCGAGGGCAGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000071699.11
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103088.10
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS TCA 72 bp AGATCCCGAAGAGTTCCTCGAAGGCTCGGTCGTGGGTaGAGAACATGGGGTGGTAGTCATTGCGCCCTTCAT +
Preference number: 6 (lower is better)
Translates to: RSRRVPRRLGRG*RTWGGSHCALH
Trigger: ATGAAGGGCGCAATGACTACCACCCCATGTTCTTCACCCACGACCGAGCCTTCGAGGAACTCTTCGGGATCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071699.11
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103088.10
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS TCA 72 bp TGTTCAAGGCAGTGTGGCACAGACACCTCCTCACAGTaGGGGCACTGGTGTTCAAGGCAGTGTGGCACACTA +
Preference number: 6 (lower is better)
Translates to: CSRQCGTDTSSQ*GHWCSRQCGTL
Trigger: TAGTGTGCCACACTGCCTTGAACACCAGTGCCCTCACTGTGAGGAGGTGTCTGTGCCACACTGCCTTGAACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS TCA 72 bp TGGGTGTGGTGGCGCAAAGTTCTAATCCCAGCCCTCTaGAGGCAGAGGAAGACAGACCTCTGTGTGAAGTGG +
Preference number: 6 (lower is better)
Translates to: WVWWRKVLIPAL*RQRKTDLCVKW
Trigger: CCACTTCACACAGAGGTCTGTCTTCCTCTGCCTTCAGAGGGCTGGGATTAGAACTTTGCGCCACCACACCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS TCA 72 bp TTGTTAGGAGGGGCAGATCCATCTGGCTCCACAGCCTaGCCAGGTTGGCTCCAGGTAACTGGGATTCAACTC +
Preference number: 6 (lower is better)
Translates to: LLGGADPSGSTA*PGWLQVTGIQL
Trigger: GAGTTGAATCCCAGTTACCTGGAGCCAACCTGGTCAGGCTGTGGAGCCAGATGGATCTGCCCCTCCTAACAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS CCA 72 bp TCATCTCCATGCTCAGCAGCGTGTCCAAGTCGCTCTTaGTTAGCTCGCTGGACATATCCTTCCCCAGGAGAG +
Preference number: 6 (lower is better)
Translates to: SSPCSAACPSRS*LARWTYPSPGE
Trigger: CTCTCCTGGGGAAGGATATGTCCAGCGAGCTAACCAAGAGCGACTTGGACACGCTGCTGAGCATGGAGATGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS CAA 72 bp TGCCAGGCCAGCTGCTCTAAGGCACAAAGTGAAAGGTaGGGTGTGGTGGCGCAAAGTTCTAATCCCAGCCCT +
Preference number: 6 (lower is better)
Translates to: CQASCSKAQSER*GVVAQSSNPSP
Trigger: AGGGCTGGGATTAGAACTTTGCGCCACCACACCCAACCTTTCACTTTGTGCCTTAGAGCAGCTGGCCTGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10
CDS GCA 72 bp AGTCCCACTCCCGGGGACGTTGCTGGGGTCAGACTCTaGGTCGAAGGCAATCCTCCTCAGTTCAAATATAAT +
Preference number: 6 (lower is better)
Translates to: SPTPGDVAGVRL*VEGNPPQFKYN
Trigger: ATTATATTTGAACTGAGGAGGATTGCCTTCGACGCAGAGTCTGACCCCAGCAACGTCCCCGGGAGTGGGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000071699.11
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103088.10
ENSMUST00000103091.9
CDS GCA 72 bp CATTTCGGGTCCATCGCACACCTCCTTGATGATGGATaGCAGCGGCCGTTTCTGGTCAATTTCAAGGAGCTG +
Preference number: 6 (lower is better)
Translates to: HFGSIAHLLDDG*QRPFLVNFKEL
Trigger: CAGCTCCTTGAAATTGACCAGAAACGGCCGCTGGCATCCATCATCAAGGAGGTGTGCGATGGACCCGAAATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126318.8
CDS CAA 72 bp TTCATCTCCATGCTCAGCAGCGTGTCCAAGTCGCTCTaGGTTAGCTCGCTGGACATATCCTTCCCCAGGAGA +
Preference number: 6 (lower is better)
Translates to: FISMLSSVSKSL*VSSLDISFPRR
Trigger: TCTCCTGGGGAAGGATATGTCCAGCGAGCTAACCAAGAGCGACTTGGACACGCTGCTGAGCATGGAGATGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS CAA 90 bp ACATGGTTCAGGATTATGGACCGAAGGTGCTTCTGTGCAAAGGCATaGGCCATGTCCTGTCTCTTGTCTTCGGGGGCCTTCAGGAACAGC +
Preference number: 6 (lower is better)
Translates to: TWFRIMDRRCFCAKA*AMSCLLSSGAFRNS
Trigger: GCTGTTCCTGAAGGCCCCCGAAGACAAGAGACAGGACATGGCCAATGCCTTTGCACAGAAGCACCTTCGGTCCATAATCCTGAACCATGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000071699.11
ENSMUST00000094329.11
ENSMUST00000103088.10
ENSMUST00000103091.9
ENSMUST00000137188.2
CDS CAA 72 bp AGGATTATGGACCGAAGGTGCTTCTGTGCAAAGGCATaGGCCATGTCAGTGACGGGCAGGTCTAGAGGGTTA +
Preference number: 6 (lower is better)
Translates to: RIMDRRCFCAKA*AMSVTGRSRGL
Trigger: TAACCCTCTAGACCTGCCCGTCACTGACATGGCCAATGCCTTTGCACAGAAGCACCTTCGGTCCATAATCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074046.13
CDS GCA 72 bp CCTCTGATCACATGGTTCAGGATTATGGACCGAAGGTaGTTCTGTGCAAAGGCATTGGCCATGTCCTGTCTC +
Preference number: 6 (lower is better)
Translates to: PLITWFRIMDRR*FCAKALAMSCL
Trigger: GAGACAGGACATGGCCAATGCCTTTGCACAGAAGCACCTTCGGTCCATAATCCTGAACCATGTGATCAGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071699.11
ENSMUST00000094329.11
ENSMUST00000103088.10
ENSMUST00000103091.9
ENSMUST00000137188.2
CDS TCA 72 bp TTAGCTCGCTGGACATATCCTTCCCCAGGAGAGCGCTaGGTCCATCAATCCAGATGCAGTACTCATACTTGT +
Preference number: 6 (lower is better)
Translates to: LARWTYPSPGER*VHQSRCSTHTC
Trigger: ACAAGTATGAGTACTGCATCTGGATTGATGGACTCAGCGCTCTCCTGGGGAAGGATATGTCCAGCGAGCTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS GCA 72 bp AAAGAGTTGGGTTTAGAGGGCAGAGCCCGGGTGATCTaGTCTCGGACAACTTGCATAACCTTGTTGAAATCC +
Preference number: 6 (lower is better)
Translates to: KELGLEGRARVI*SRTTCITLLKS
Trigger: GGATTTCAACAAGGTTATGCAAGTTGTCCGAGAGCAGATCACCCGGGCTCTGCCCTCTAAACCCAACTCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000071699.11
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103088.10
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS CCA 72 bp ATCTCTGTTTTGATTGGACGATTCCCTCTGATCACATaGTTCAGGATTATGGACCGAAGGTGCTTCTGTGCA +
Preference number: 6 (lower is better)
Translates to: ISVLIGRFPLIT*FRIMDRRCFCA
Trigger: TGCACAGAAGCACCTTCGGTCCATAATCCTGAACCATGTGATCAGAGGGAATCGTCCAATCAAAACAGAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071699.11
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103088.10
ENSMUST00000103091.9
ENSMUST00000137188.2
CDS CAA 72 bp GCGCTGAGTCCATCAATCCAGATGCAGTACTCATACTaGTTGGGAGCAATGAAATTCAGTGTCTCATCAGGA +
Preference number: 6 (lower is better)
Translates to: ALSPSIQMQYSY*LGAMKFSVSSG
Trigger: TCCTGATGAGACACTGAATTTCATTGCTCCCAACAAGTATGAGTACTGCATCTGGATTGATGGACTCAGCGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074046.13
ENSMUST00000094329.11
ENSMUST00000103091.9
ENSMUST00000148643.8
CDS CAA 72 bp TGTTCAAGGCAGTGTGGCACACTACTTACCTCATACTaGTTGGGAGCAATGAAATTCAGTGTCTCATCAGGA +
Preference number: 6 (lower is better)
Translates to: CSRQCGTLLTSY*LGAMKFSVSSG
Trigger: TCCTGATGAGACACTGAATTTCATTGCTCCCAACAAGTATGAGGTAAGTAGTGTGCCACACTGCCTTGAACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071699.11
ENSMUST00000103088.10