RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ELMO1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041112

Ensembl transcript IDs: ENSMUST00000072519.7, ENSMUST00000180626.2, ENSMUST00000221595.3

Found 221 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ATGAGGCCAAAGGAAGCTGCAGCTTCCCCTCCACCCAAGGGCAGTTaGAGCATGTGGATGTGTTTGCTCTGCTCTCTGCTGATAGCTAGA +
Preference number: 1 (lower is better)
Translates to: MRPKEAAASPPPKGS*SMWMCLLCSLLIAR
Trigger: TCTAGCTATCAGCAGAGAGCAGAGCAAACACATCCACATGCTGCAACTGCCCTTGGGTGGAGGGGAAGCTGCAGCTTCCTTTGGCCTCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR CCA 90 bp GATGGAGCAGGACTACTGACTTCATTTGTGCTTTCTGCTAAGGGCTaGGAGCTCGAAGAAATGAAGAAGGCAGGCCTGGGCTGGGGCAAA +
Preference number: 1 (lower is better)
Translates to: DGAGLLTSFVLSAKG*ELEEMKKAGLGWGK
Trigger: TTTGCCCCAGCCCAGGCCTGCCTTCTTCATTTCTTCGAGCTCCCAGCCCTTAGCAGAAAGCACAAATGAAGTCAGTAGTCCTGCTCCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR CCA 90 bp TCCAACCCTGGCCTTAGGAATTTCTCTTGGTTTGGTGAGCAAATATaGGGCAGCTTGGGGCTAACTGGCTTTCCTACTCCAGGCAAGAAT +
Preference number: 1 (lower is better)
Translates to: SNPGLRNFSWFGEQI*GSLGLTGFPTPGKN
Trigger: ATTCTTGCCTGGAGTAGGAAAGCCAGTTAGCCCCAAGCTGCCCCATATTTGCTCACCAAACCAAGAGAAATTCCTAAGGCCAGGGTTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR GCA 90 bp AACACCTACTCAAACATCGTGGTTCAGAAGTCTGGAGGGGCTGTCTaGTTTGCATCTCTAACAAATTCCCAGGTGATGGATATGCTGGAG +
Preference number: 1 (lower is better)
Translates to: NTYSNIVVQKSGGAV*FASLTNSQVMDMLE
Trigger: CTCCAGCATATCCATCACCTGGGAATTTGTTAGAGATGCAAAGCAGACAGCCCCTCCAGACTTCTGAACCACGATGTTTGAGTAGGTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR TCA 90 bp TTAGGGGCGGTTAGGTTTAGTTTATCAGAGATGGAGCAGGACTACTaGCTTCATTTGTGCTTTCTGCTAAGGGCTGGGAGCTCGAAGAAA +
Preference number: 1 (lower is better)
Translates to: LGAVRFSLSEMEQDY*LHLCFLLRAGSSKK
Trigger: TTTCTTCGAGCTCCCAGCCCTTAGCAGAAAGCACAAATGAAGTCAGTAGTCCTGCTCCATCTCTGATAAACTAAACCTAACCGCCCCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR TCA 90 bp ACACTCCGATGTGGGCACTCTAGTGGAAAGAATGACCCCTGTGAATaGCTATGGATTTTGCAATTTATGGAGTGCTCTGGACCATGTCAC +
Preference number: 1 (lower is better)
Translates to: TLRCGHSSGKNDPCE*LWILQFMECSGPCH
Trigger: GTGACATGGTCCAGAGCACTCCATAAATTGCAAAATCCATAGTCATTCACAGGGGTCATTCTTTCCACTAGAGTGCCCACATCGGAGTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR CCA 90 bp TGCTTCCCAAATGAACACCTACTCAAACATCGTGGTTCAGAAGTCTaGAGGGGCTGTCTGCTTTGCATCTCTAACAAATTCCCAGGTGAT +
Preference number: 1 (lower is better)
Translates to: CFPNEHLLKHRGSEV*RGCLLCISNKFPGD
Trigger: ATCACCTGGGAATTTGTTAGAGATGCAAAGCAGACAGCCCCTCCAGACTTCTGAACCACGATGTTTGAGTAGGTGTTCATTTGGGAAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR CCA 90 bp ATGGGGTATACAGTGGGTACAATGATAGTTAGGAGGGCTACATTCTaGGGTCCTACAGTGCAGGAGTGTGTGGATACAGTTCACAAGATT +
Preference number: 1 (lower is better)
Translates to: MGYTVGTMIVRRATF*GPTVQECVDTVHKI
Trigger: AATCTTGTGAACTGTATCCACACACTCCTGCACTGTAGGACCCCAGAATGTAGCCCTCCTAACTATCATTGTACCCACTGTATACCCCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR TCA 90 bp CAGTCACTTTCAACACCTCGGGTGGGACTGGAAGACATTATTAAATaGAATATTCTCAAGGACAGTAAGCAGAACACCCACCATGGAATC +
Preference number: 1 (lower is better)
Translates to: QSLSTPRVGLEDIIK*NILKDSKQNTHHGI
Trigger: GATTCCATGGTGGGTGTTCTGCTTACTGTCCTTGAGAATATTTCATTTAATAATGTCTTCCAGTCCCACCCGAGGTGTTGAAAGTGACTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR CCA 90 bp AATGGTCATGGCAATAGAGAGACTTTCTCACTACCCAGTGTAACATaGACCAAAACACTATGCTGTCCCACACTTGTGCACAAGTATTAT +
Preference number: 1 (lower is better)
Translates to: NGHGNRETFSLPSVT*TKTLCCPTLVHKYY
Trigger: ATAATACTTGTGCACAAGTGTGGGACAGCATAGTGTTTTGGTCCATGTTACACTGGGTAGTGAGAAAGTCTCTCTATTGCCATGACCATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR CCA 90 bp TGGAGCCATAAAAAGATAAAATACAGTCACTTTCAACACCTCGGGTaGGACTGGAAGACATTATTAAATGAAATATTCTCAAGGACAGTA +
Preference number: 1 (lower is better)
Translates to: WSHKKIKYSHFQHLG*DWKTLLNEIFSRTV
Trigger: TACTGTCCTTGAGAATATTTCATTTAATAATGTCTTCCAGTCCCACCCGAGGTGTTGAAAGTGACTGTATTTTATCTTTTTATGGCTCCA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR-3UTR GCA 90 bp CTTTCTGCTAAGGGCTGGGAGCTCGAAGAAATGAAGAAGGCAGGCCTGGGCTGGCCACCCAAGGGCAGTTaGAGCATGTGGATGTGTTTG +
Preference number: 2 (lower is better)
Translates to: LSAKGWELEEMKKAGLGWPPKGS*SMWMCL
Trigger: CAAACACATCCACATGCTGCAACTGCCCTTGGGTGG...CCAGCCCAGGCCTGCCTTCTTCATTTCTTCGAGCTCCCAGCCCTTAGCAGAAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR-3UTR CCA 90 bp GCTAAGGGCTGGGAGCTCGAAGAAATGAAGAAGGCAGGCCTGGGCTGGGGCAAATTTGGTGAGCAAATATaGGGCAGCTTGGGGCTAACT +
Preference number: 2 (lower is better)
Translates to: AKGWELEEMKKAGLGWGKFGEQI*GSLGLT
Trigger: AGTTAGCCCCAAGCTGCCCCATATTTGCTCACCAAA...TTTGCCCCAGCCCAGGCCTGCCTTCTTCATTTCTTCGAGCTCCCAGCCCTTAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR-3UTR CCA 90 bp CACTACATGGGGCTTGGACAGTTGACGCCAGAAGTATCCAACTTGAGGCACGGGGACAAGGAACAGGCATaGACTCTGTGGACAGTTTGG +
Preference number: 2 (lower is better)
Translates to: HYMGLGQLTPEVSNLRHGDKEQA*TLWTVW
Trigger: CCAAACTGTCCACAGAGTCCATGCCTGTTCCTTGTC...CCCGTGCCTCAAGTTGGATACTTCTGGCGTCAACTGTCCAAGCCCCATGTAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR-3UTR CCA 90 bp CACTACATGGGGCTTGGACAGTTGACGCCAGAAGTATCCAACTTGAGGCACGGGATTTATGGAGTGCTCTaGACCATGTCACTGGAGCCC +
Preference number: 2 (lower is better)
Translates to: HYMGLGQLTPEVSNLRHGIYGVL*TMSLEP
Trigger: GGGCTCCAGTGACATGGTCCAGAGCACTCCATAAAT...CCCGTGCCTCAAGTTGGATACTTCTGGCGTCAACTGTCCAAGCCCCATGTAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR-3UTR TCA 90 bp AGGAGTCAATACTGGAGGCTGGAGAGAGCACATGGGGTATACAGTGGGTACAATGGATGTCTGACAGCTTaGCCACCCTGGAAAACCTGG +
Preference number: 2 (lower is better)
Translates to: RSQYWRLERAHGVYSGYNGCLTA*PPWKTW
Trigger: CCAGGTTTTCCAGGGTGGTCAAGCTGTCAGACATCC...ATTGTACCCACTGTATACCCCATGTGCTCTCTCCAGCCTCCAGTATTGACTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR-3UTR CCA 90 bp ATTCTGGGGTCCTACAGTGCAGGAGTGTGTGGATACAGTTCACAAGATTGTATAAAGGCAGGCCTGGGCTaGGGCAAAGAGAGGAAGCCC +
Preference number: 2 (lower is better)
Translates to: ILGSYSAGVCGYSSQDCIKAGLG*GKERKP
Trigger: GGGCTTCCTCTCTTTGCCCCAGCCCAGGCCTGCCTT...TATACAATCTTGTGAACTGTATCCACACACTCCTGCACTGTAGGACCCCAGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR-3UTR CCA 90 bp CACTACATGGGGCTTGGACAGTTGACGCCAGAAGTATCCAACTTGAGGCACGGGCAAAACCTGGGGATGTaGGATCTACTTCAGTGCCTA +
Preference number: 2 (lower is better)
Translates to: HYMGLGQLTPEVSNLRHGQNLGM*DLLQCL
Trigger: TAGGCACTGAAGTAGATCCCACATCCCCAGGTTTTG...CCCGTGCCTCAAGTTGGATACTTCTGGCGTCAACTGTCCAAGCCCCATGTAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR CAA 90 bp GGCCTTAGGAATTTCTCTTGGTTTGGTGAGCAAATATGGGGCAGCTaGGGGCTAACTGGCTTTCCTACTCCAGGCAAGAATGAAGGAAGG +
Preference number: 2 (lower is better)
Translates to: GLRNFSWFGEQIWGS*GLTGFPTPGKNEGR
Trigger: CCTTCCTTCATTCTTGCCTGGAGTAGGAAAGCCAGTTAGCCCCAAGCTGCCCCATATTTGCTCACCAAACCAAGAGAAATTCCTAAGGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR-3UTR CCA 90 bp CTACTCCAGGCAAGAATGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGGGCAGTTGCAGCATGTaGATGTGTTTGCTCTGCTCT +
Preference number: 2 (lower is better)
Translates to: LLQARMKEGRKEGRKEGRGSCSM*MCLLCS
Trigger: AGAGCAGAGCAAACACATCCACATGCTGCAACTGCC...CCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCATTCTTGCCTGGAGTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR-3UTR GCA 90 bp CTACTCCAGGCAAGAATGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGTGGATGTGTTTGCTCTaGTCTCTGCTGATAGCTAGA +
Preference number: 2 (lower is better)
Translates to: LLQARMKEGRKEGRKEGRWMCLL*SLLIAR
Trigger: TCTAGCTATCAGCAGAGAGCAGAGCAAACACATCCA...CCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCATTCTTGCCTGGAGTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR-3UTR TCA 90 bp CAGGAGGTGCATCTCTTAAACTTTGAAGTGAAAAGTGCTCTGCCTCTATCCACTATAGAGCTGATGGTGTaGGGTGACCCTAGAGAGAAG +
Preference number: 2 (lower is better)
Translates to: QEVHLLNFEVKSALPLSTIELMV*GDPREK
Trigger: CTTCTCTCTAGGGTCACCTCACACCATCAGCTCTAT...AGTGGATAGAGGCAGAGCACTTTTCACTTCAAAGTTTAAGAGATGCACCTCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR-3UTR TCA 90 bp AGCCATAAAAAGATAAAATACAGTCACTTTCAACACCTCGGGTGGGACTGGAAGTGCTGCTGCTACAAGTaGGACCAAAGTGGACCAGAG +
Preference number: 2 (lower is better)
Translates to: SHKKIKYSHFQHLGWDWKCCCYK*DQSGPE
Trigger: CTCTGGTCCACTTTGGTCTCACTTGTAGCAGCAGCA...CTTCCAGTCCCACCCGAGGTGTTGAAAGTGACTGTATTTTATCTTTTTATGGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR-3UTR TCA 90 bp CAGGAGGTGCATCTCTTAAACTTTGAAGTGAAAAGTGCTCTGCCTCTATCCACTGTAAACTTGGATGTCTaGCAGCTTGACCACCCTGGA +
Preference number: 2 (lower is better)
Translates to: QEVHLLNFEVKSALPLSTVNLDV*QLDHPG
Trigger: TCCAGGGTGGTCAAGCTGTCAGACATCCAAGTTTAC...AGTGGATAGAGGCAGAGCACTTTTCACTTCAAAGTTTAAGAGATGCACCTCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR-3UTR CCA 90 bp CAGGAGGTGCATCTCTTAAACTTTGAAGTGAAAAGTGCTCTGCCTCTATCCACTGGGGTAGGAGGCCTTTaGTCTTCTAATCCAGTAGCA +
Preference number: 2 (lower is better)
Translates to: QEVHLLNFEVKSALPLSTGVGGL*SSNPVA
Trigger: TGCTACTGGATTAGAAGACCAAAGGCCTCCTACCCC...AGTGGATAGAGGCAGAGCACTTTTCACTTCAAAGTTTAAGAGATGCACCTCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR-3UTR TCA 90 bp GTGTCCTTAAGACGCTGTCAGTCTATGAAAAGGTGTGTCTTCCATACAAAAGCTAGGAATACCAGGAGATaGATTCTTCCCATCCAGGCC +
Preference number: 2 (lower is better)
Translates to: VSLRRCQSMKRCVFHTKARNTRR*ILPIQA
Trigger: GGCCTGGATGGGAAGAATTCATCTCCTGGTATTCCT...AGCTTTTGTATGGAAGACACACCTTTTCATAGACTGACAGCGTCTTAAGGACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR-3UTR TCA 90 bp CAGGAGGTGCATCTCTTAAACTTTGAAGTGAAAAGTGCTCTGCCTCTATCCACTACAGTTTGGGAGACCTaGTGCTGTAGACAACTACAA +
Preference number: 2 (lower is better)
Translates to: QEVHLLNFEVKSALPLSTTVWET*CCRQLQ
Trigger: TTGTAGTTGTCTACAGCATCAGGTCTCCCAAACTGT...AGTGGATAGAGGCAGAGCACTTTTCACTTCAAAGTTTAAGAGATGCACCTCCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR-3UTR CCA 90 bp ACATGTCCCCTTGGTGTCAGTAGTGTCTTTAATTGGACTGGCTCTATAAGTCATCTTTCTGCTAAGGGCTaGGAGCTCGAAGAAATGAAG +
Preference number: 2 (lower is better)
Translates to: TCPLGVSSVFNWTGSISHLSAKG*ELEEMK
Trigger: CTTCATTTCTTCGAGCTCCCAGCCCTTAGCAGAAAG...ATGACTTATAGAGCCAGTCCAATTAAAGACACTACTGACACCAAGGGGACATGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR CAA 90 bp CACAGTAAGATTGGCTTTGGCGTAACTGATTTCAGGTGTGTAGGTTaGTATTCTTTTTCCGTGGTTCAACATGTCCCCTTGGTGTCAGTA +
Preference number: 2 (lower is better)
Translates to: HSKIGFGVTDFRCVG*YSFSVVQHVPLVSV
Trigger: TACTGACACCAAGGGGACATGTTGAACCACGGAAAAAGAATACAAACCTACACACCTGAAATCAGTTACGCCAAAGCCAATCTTACTGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR-3UTR TCA 90 bp GTGTCCTTAAGACGCTGTCAGTCTATGAAAAGGTGTGTCTTCCATACAAAAGCTATGGAGCAGGACTACTaGCTTCATTTGTGCTTTCTG +
Preference number: 2 (lower is better)
Translates to: VSLRRCQSMKRCVFHTKAMEQDY*LHLCFL
Trigger: CAGAAAGCACAAATGAAGTCAGTAGTCCTGCTCCAT...AGCTTTTGTATGGAAGACACACCTTTTCATAGACTGACAGCGTCTTAAGGACAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR-3UTR CCA 90 bp GGCCAACCTGTAATTGACCATCTTGACAGCCACAAAGAGCAGTCACCTGCATGTAGTAGTGTCTTTAATTaGACTGGCTCTATAAGTCAT +
Preference number: 2 (lower is better)
Translates to: GQPVIDHLDSHKEQSPACSSVFN*TGSISH
Trigger: ATGACTTATAGAGCCAGTCCAATTAAAGACACTACT...ACATGCAGGTGACTGCTCTTTGTGGCTGTCAAGATGGTCAATTACAGGTTGGCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR-3UTR CCA 90 bp ATTCTGGGGTCCTACAGTGCAGGAGTGTGTGGATACAGTTCACAAGATTGTATAGGATTTTGCAATTTATaGAGTGCTCTGGACCATGTC +
Preference number: 2 (lower is better)
Translates to: ILGSYSAGVCGYSSQDCIGFCNL*SALDHV
Trigger: GACATGGTCCAGAGCACTCCATAAATTGCAAAATCC...TATACAATCTTGTGAACTGTATCCACACACTCCTGCACTGTAGGACCCCAGAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR-3UTR CCA 90 bp GCAGTAAGGAACCTTGGCCTCTTTCCAACCATGGAAGAAGTCTTGCAGGTTTTGATAAAAGGAAAATACTaGGGTGACTCATCTAATAGC +
Preference number: 2 (lower is better)
Translates to: AVRNLGLFPTMEEVLQVLIKGKY*GDSSNS
Trigger: GCTATTAGATGAGTCACCCCAGTATTTTCCTTTTAT...CAAAACCTGCAAGACTTCTTCCATGGTTGGAAAGAGGCCAAGGTTCCTTACTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
3UTR-3UTR TCA 90 bp TTTGAAGTGAAAAGTGCTCTGCCTCTATCCACTTCCTTTTATCTAACTTATCACGAGAGAGAGGCAATGTaGAAGCAATCTCAACTCACA +
Preference number: 2 (lower is better)
Translates to: FEVKSALPLSTSFYLTYHEREAM*KQSQLT
Trigger: TGTGAGTTGAGATTGCTTTCACATTGCCTCTCTCTC...GTGATAAGTTAGATAAAAGGAAGTGGATAGAGGCAGAGCACTTTTCACTTCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR GCA 72 bp AAGGAAGCTGCAGCTTCCCCTCCACCCAAGGGCAGTTaGAGCATGTGGATGTGTTTGCTCTGCTCTCTGCTG +
Preference number: 3 (lower is better)
Translates to: KEAAASPPPKGS*SMWMCLLCSLL
Trigger: CAGCAGAGAGCAGAGCAAACACATCCACATGCTGCAACTGCCCTTGGGTGGAGGGGAAGCTGCAGCTTCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR GCA 72 bp CCCAAGGGCAGTTGCAGCATGTGGATGTGTTTGCTCTaGTCTCTGCTGATAGCTAGATCTTCCAGTTTGGGA +
Preference number: 3 (lower is better)
Translates to: PKGSCSMWMCLL*SLLIARSSSLG
Trigger: TCCCAAACTGGAAGATCTAGCTATCAGCAGAGAGCAGAGCAAACACATCCACATGCTGCAACTGCCCTTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR CCA 72 bp GCCACAAAGAGCAGTCACCTGCATGTATCTAGATCTTaGCTGCCAGTTCAGAGTGGCTTAGCTGCACTGCAT +
Preference number: 3 (lower is better)
Translates to: ATKSSHLHVSRS*LPVQSGLAALH
Trigger: ATGCAGTGCAGCTAAGCCACTCTGAACTGGCAGCCAAGATCTAGATACATGCAGGTGACTGCTCTTTGTGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR-3UTR CAA 90 bp CACTACATGGGGCTTGGACAGTTGACGCCAGAAGTATCCAACTTGAGGCACGGGGAAATAGGTGAGATGTaGAATATGGGCAACCATCCT +
Preference number: 3 (lower is better)
Translates to: HYMGLGQLTPEVSNLRHGEIGEM*NMGNHP
Trigger: AGGATGGTTGCCCATATTCAACATCTCACCTATTTC...CCCGTGCCTCAAGTTGGATACTTCTGGCGTCAACTGTCCAAGCCCCATGTAGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR CCA 72 bp GGCCTTAGGAATTTCTCTTGGTTTGGTGAGCAAATATaGGGCAGCTTGGGGCTAACTGGCTTTCCTACTCCA +
Preference number: 3 (lower is better)
Translates to: GLRNFSWFGEQI*GSLGLTGFPTP
Trigger: TGGAGTAGGAAAGCCAGTTAGCCCCAAGCTGCCCCATATTTGCTCACCAAACCAAGAGAAATTCCTAAGGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR CCA 72 bp ATGACCCCTGTGAATGACTATGGATTTTGCAATTTATaGAGTGCTCTGGACCATGTCACTGGAGCCCAGGCC +
Preference number: 3 (lower is better)
Translates to: MTPVNDYGFCNL*SALDHVTGAQA
Trigger: GGCCTGGGCTCCAGTGACATGGTCCAGAGCACTCCATAAATTGCAAAATCCATAGTCATTCACAGGGGTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR-3UTR CAA 90 bp GGCCAACCTGTAATTGACCATCTTGACAGCCACAAAGAGCAGTCACCTGCATGTAGCATGTGGATGTGTTaGCTCTGCTCTCTGCTGATA +
Preference number: 3 (lower is better)
Translates to: GQPVIDHLDSHKEQSPACSMWMC*LCSLLI
Trigger: TATCAGCAGAGAGCAGAGCAAACACATCCACATGCT...ACATGCAGGTGACTGCTCTTTGTGGCTGTCAAGATGGTCAATTACAGGTTGGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR-3UTR CAA 90 bp CTCATTTCCTTGGTGAGTTGGGGTGTGCATCCTAGAAATGATATCGGCAATGCTTGGATGTCTGACAGCTaGACCACCCTGGAAAACCTG +
Preference number: 3 (lower is better)
Translates to: LISLVSWGVHPRNDIGNAWMSDS*TTLENL
Trigger: CAGGTTTTCCAGGGTGGTCAAGCTGTCAGACATCCA...AGCATTGCCGATATCATTTCTAGGATGCACACCCCAACTCACCAAGGAAATGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR TCA 72 bp ACAGTAAGCAGAACACCCACCATGGAATCCTGTAGCTaGATAAGGAGTCAATACTGGAGGCTGGAGAGAGCA +
Preference number: 3 (lower is better)
Translates to: TVSRTPTMESCS*IRSQYWRLERA
Trigger: TGCTCTCTCCAGCCTCCAGTATTGACTCCTTATTCAGCTACAGGATTCCATGGTGGGTGTTCTGCTTACTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR GCA 72 bp CATCGTGGTTCAGAAGTCTGGAGGGGCTGTCTGCTTTaGATCTCTAACAAATTCCCAGGTGATGGATATGCT +
Preference number: 3 (lower is better)
Translates to: HRGSEVWRGCLL*ISNKFPGDGYA
Trigger: AGCATATCCATCACCTGGGAATTTGTTAGAGATGCAAAGCAGACAGCCCCTCCAGACTTCTGAACCACGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR CCA 72 bp ACAGTGGGTACAATGATAGTTAGGAGGGCTACATTCTaGGGTCCTACAGTGCAGGAGTGTGTGGATACAGTT +
Preference number: 3 (lower is better)
Translates to: TVGTMIVRRATF*GPTVQECVDTV
Trigger: AACTGTATCCACACACTCCTGCACTGTAGGACCCCAGAATGTAGCCCTCCTAACTATCATTGTACCCACTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR-3UTR CAA 90 bp AGGAGTCAATACTGGAGGCTGGAGAGAGCACATGGGGTATACAGTGGGTACAATGGAATTTCTCTTGGTTaGGTGAGCAAATATGGGGCA +
Preference number: 3 (lower is better)
Translates to: RSQYWRLERAHGVYSGYNGISLG*VSKYGA
Trigger: TGCCCCATATTTGCTCACCAAACCAAGAGAAATTCC...ATTGTACCCACTGTATACCCCATGTGCTCTCTCCAGCCTCCAGTATTGACTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR GCA 72 bp TCAAACATCGTGGTTCAGAAGTCTGGAGGGGCTGTCTaGTTTGCATCTCTAACAAATTCCCAGGTGATGGAT +
Preference number: 3 (lower is better)
Translates to: SNIVVQKSGGAV*FASLTNSQVMD
Trigger: ATCCATCACCTGGGAATTTGTTAGAGATGCAAAGCAGACAGCCCCTCCAGACTTCTGAACCACGATGTTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR CCA 72 bp GGCAATAGAGAGACTTTCTCACTACCCAGTGTAACATaGACCAAAACACTATGCTGTCCCACACTTGTGCAC +
Preference number: 3 (lower is better)
Translates to: GNRETFSLPSVT*TKTLCCPTLVH
Trigger: GTGCACAAGTGTGGGACAGCATAGTGTTTTGGTCCATGTTACACTGGGTAGTGAGAAAGTCTCTCTATTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR CCA 72 bp GGGCTACATTCTGGGGTCCTACAGTGCAGGAGTGTGTaGATACAGTTCACAAGATTGTATATCTCGAGATCA +
Preference number: 3 (lower is better)
Translates to: GLHSGVLQCRSV*IQFTRLYISRS
Trigger: TGATCTCGAGATATACAATCTTGTGAACTGTATCCACACACTCCTGCACTGTAGGACCCCAGAATGTAGCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR TCA 72 bp GTTAGGTTTAGTTTATCAGAGATGGAGCAGGACTACTaGCTTCATTTGTGCTTTCTGCTAAGGGCTGGGAGC +
Preference number: 3 (lower is better)
Translates to: VRFSLSEMEQDY*LHLCFLLRAGS
Trigger: GCTCCCAGCCCTTAGCAGAAAGCACAAATGAAGTCAGTAGTCCTGCTCCATCTCTGATAAACTAAACCTAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR TCA 72 bp TGTGGGCACTCTAGTGGAAAGAATGACCCCTGTGAATaGCTATGGATTTTGCAATTTATGGAGTGCTCTGGA +
Preference number: 3 (lower is better)
Translates to: CGHSSGKNDPCE*LWILQFMECSG
Trigger: TCCAGAGCACTCCATAAATTGCAAAATCCATAGTCATTCACAGGGGTCATTCTTTCCACTAGAGTGCCCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR CCA 72 bp GGTCTCAATGTGTGTGGGAAATGTCTTAAGCAGCCTTaGGAAATAGGTGAGATGTTGAATATGGGCAACCAT +
Preference number: 3 (lower is better)
Translates to: GLNVCGKCLKQP*EIGEMLNMGNH
Trigger: ATGGTTGCCCATATTCAACATCTCACCTATTTCCCAAGGCTGCTTAAGACATTTCCCACACACATTGAGACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR CCA 72 bp TATTTTTGTACAGTGAGTCTCATTTCCTTGGTGAGTTaGGGTGTGCATCCTAGAAATGATATCGGCAATGCT +
Preference number: 3 (lower is better)
Translates to: YFCTVSLISLVS*GVHPRNDIGNA
Trigger: AGCATTGCCGATATCATTTCTAGGATGCACACCCCAACTCACCAAGGAAATGAGACTCACTGTACAAAAATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR CCA 72 bp TCAACATGTCCCCTTGGTGTCAGTAGTGTCTTTAATTaGACTGGCTCTATAAGTCATGAAATGGTAAGGAGA +
Preference number: 3 (lower is better)
Translates to: STCPLGVSSVFN*TGSISHEMVRR
Trigger: TCTCCTTACCATTTCATGACTTATAGAGCCAGTCCAATTAAAGACACTACTGACACCAAGGGGACATGTTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR-3UTR CAA 90 bp AGCCATAAAAAGATAAAATACAGTCACTTTCAACACCTCGGGTGGGACTGGAAGTTCAGGTGTGTAGGTTaGTATTCTTTTTCCGTGGTT +
Preference number: 3 (lower is better)
Translates to: SHKKIKYSHFQHLGWDWKFRCVG*YSFSVV
Trigger: AACCACGGAAAAAGAATACAAACCTACACACCTGAA...CTTCCAGTCCCACCCGAGGTGTTGAAAGTGACTGTATTTTATCTTTTTATGGCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR GCA 72 bp TTCTCACTACCCAGTGTAACATGGACCAAAACACTATaGTGTCCCACACTTGTGCACAAGTATTATATATAT +
Preference number: 3 (lower is better)
Translates to: FSLPSVTWTKTL*CPTLVHKYYIY
Trigger: ATATATATAATACTTGTGCACAAGTGTGGGACAGCATAGTGTTTTGGTCCATGTTACACTGGGTAGTGAGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR CCA 72 bp ATAAAATACAGTCACTTTCAACACCTCGGGTGGGACTaGAAGACATTATTAAATGAAATATTCTCAAGGACA +
Preference number: 3 (lower is better)
Translates to: IKYSHFQHLGWD*KTLLNEIFSRT
Trigger: TGTCCTTGAGAATATTTCATTTAATAATGTCTTCCAGTCCCACCCGAGGTGTTGAAAGTGACTGTATTTTAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CCA 90 bp GCTAAGGGCTGGGAGCTCGAAGAAATGAAGAAGGCAGGCCTGGGCTGGGGCAAATGGGGCACTTCTCCTTaGGGGCTCTCTTCCAAGTCG +
Preference number: 4 (lower is better)
Translates to: AKGWELEEMKKAGLGWGKWGTSP*GLSSKS
Trigger: CGACTTGGAAGAGAGCCCCCAAGGAGAAGTGCCCCA...TTTGCCCCAGCCCAGGCCTGCCTTCTTCATTTCTTCGAGCTCCCAGCCCTTAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR GCA 90 bp CTTTCTGCTAAGGGCTGGGAGCTCGAAGAAATGAAGAAGGCAGGCCTGGGCTGGACCGGCAATTTGTCCTaGAGGGAATCGTGGGGCACT +
Preference number: 4 (lower is better)
Translates to: LSAKGWELEEMKKAGLGWTGNLS*RESWGT
Trigger: AGTGCCCCACGATTCCCTGCAGGACAAATTGCCGGT...CCAGCCCAGGCCTGCCTTCTTCATTTCTTCGAGCTCCCAGCCCTTAGCAGAAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CCA 90 bp GGAAGCTGCAGCTTCCCCTCCACCCAAGGGCAGTTGCAGCATGTGGATGTGTTTCCATTGACTCCAGAATaGCCAAGGACCGCTGGAGGA +
Preference number: 4 (lower is better)
Translates to: GSCSFPSTQGQLQHVDVFPLTPE*PRTAGG
Trigger: TCCTCCAGCGGTCCTTGGCCATTCTGGAGTCAATGG...AAACACATCCACATGCTGCAACTGCCCTTGGGTGGAGGGGAAGCTGCAGCTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CCA 90 bp TTTGTGCTTTCTGCTAAGGGCTGGGAGCTCGAAGAAATGAAGAAGGCAGGCCTGTCCTGCAGGGAATCGTaGGGCACTTCTCCTTGGGGG +
Preference number: 4 (lower is better)
Translates to: FVLSAKGWELEEMKKAGLSCRES*GTSPWG
Trigger: CCCCCAAGGAGAAGTGCCCCACGATTCCCTGCAGGA...CAGGCCTGCCTTCTTCATTTCTTCGAGCTCCCAGCCCTTAGCAGAAAGCACAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR GCA 90 bp CACTACATGGGGCTTGGACAGTTGACGCCAGAAGTATCCAACTTGAGGCACGGGCTTTCCCGTCACCACTaGTTTGATATCTGCCACCGG +
Preference number: 4 (lower is better)
Translates to: HYMGLGQLTPEVSNLRHGLSRHH*FDICHR
Trigger: CCGGTGGCAGATATCAAAGCAGTGGTGACGGGAAAG...CCCGTGCCTCAAGTTGGATACTTCTGGCGTCAACTGTCCAAGCCCCATGTAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR GCA 90 bp TTTGTGCTTTCTGCTAAGGGCTGGGAGCTCGAAGAAATGAAGAAGGCAGGCCTGGGGGATAGGCGGAGGTaGATCCGGGATCTGGATGTT +
Preference number: 4 (lower is better)
Translates to: FVLSAKGWELEEMKKAGLGDRRR*IRDLDV
Trigger: AACATCCAGATCCCGGATGCACCTCCGCCTATCCCC...CAGGCCTGCCTTCTTCATTTCTTCGAGCTCCCAGCCCTTAGCAGAAAGCACAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR TCA 90 bp GGCCAACCTGTAATTGACCATCTTGACAGCCACAAAGAGCAGTCACCTGCATGTGTGCCATCTCATTGTTaGTGGCCCGCTGTGCTCGGA +
Preference number: 4 (lower is better)
Translates to: GQPVIDHLDSHKEQSPACVPSHC*WPAVLG
Trigger: TCCGAGCACAGCGGGCCATCAACAATGAGATGGCAC...ACATGCAGGTGACTGCTCTTTGTGGCTGTCAAGATGGTCAATTACAGGTTGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR TCA 90 bp TTTGTGCTTTCTGCTAAGGGCTGGGAGCTCGAAGAAATGAAGAAGGCAGGCCTGGCAGCTCGCCCACTTTaGGGATCTCACACAGCATCT +
Preference number: 4 (lower is better)
Translates to: FVLSAKGWELEEMKKAGLAARPL*GSHTAS
Trigger: AGATGCTGTGTGAGATCCTCAAAGTGGGCGAGCTGC...CAGGCCTGCCTTCTTCATTTCTTCGAGCTCCCAGCCCTTAGCAGAAAGCACAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR TCA 90 bp CACTACATGGGGCTTGGACAGTTGACGCCAGAAGTATCCAACTTGAGGCACGGGCCTTTCTCTTTCATATaGGGGCAGTCCTTTCCCGTC +
Preference number: 4 (lower is better)
Translates to: HYMGLGQLTPEVSNLRHGPFSFI*GQSFPV
Trigger: GACGGGAAAGGACTGCCCTCATATGAAAGAGAAAGG...CCCGTGCCTCAAGTTGGATACTTCTGGCGTCAACTGTCCAAGCCCCATGTAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR CAA 72 bp CCTCCACCCAAGGGCAGTTGCAGCATGTGGATGTGTTaGCTCTGCTCTCTGCTGATAGCTAGATCTTCCAGT +
Preference number: 4 (lower is better)
Translates to: PPPKGSCSMWMC*LCSLLIARSSS
Trigger: ACTGGAAGATCTAGCTATCAGCAGAGAGCAGAGCAAACACATCCACATGCTGCAACTGCCCTTGGGTGGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR GCA 90 bp CTTTCTGCTAAGGGCTGGGAGCTCGAAGAAATGAAGAAGGCAGGCCTGGGCTGGTATGCATCCTGGTGGTaGTTAGCGAAATACAGCATG +
Preference number: 4 (lower is better)
Translates to: LSAKGWELEEMKKAGLGWYASWW*LAKYSM
Trigger: CATGCTGTATTTCGCTAAGCACCACCAGGATGCATA...CCAGCCCAGGCCTGCCTTCTTCATTTCTTCGAGCTCCCAGCCCTTAGCAGAAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR GCA 90 bp CTTTCTGCTAAGGGCTGGGAGCTCGAAGAAATGAAGAAGGCAGGCCTGGGCTGGTGCTCCTTCACCACCTaGATTACCTTGTTGAAGTCT +
Preference number: 4 (lower is better)
Translates to: LSAKGWELEEMKKAGLGWCSFTT*ITLLKS
Trigger: AGACTTCAACAAGGTAATGCAGGTGGTGAAGGAGCA...CCAGCCCAGGCCTGCCTTCTTCATTTCTTCGAGCTCCCAGCCCTTAGCAGAAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR GCA 90 bp TTTGTGCTTTCTGCTAAGGGCTGGGAGCTCGAAGAAATGAAGAAGGCAGGCCTGGGGTGTCCAGGTCATTaGGTGTCAGGTCACTCATCA +
Preference number: 4 (lower is better)
Translates to: FVLSAKGWELEEMKKAGLGCPGH*VSGHSS
Trigger: TGATGAGTGACCTGACACGCAATGACCTGGACACCC...CAGGCCTGCCTTCTTCATTTCTTCGAGCTCCCAGCCCTTAGCAGAAAGCACAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CCA 90 bp GCTAAGGGCTGGGAGCTCGAAGAAATGAAGAAGGCAGGCCTGGGCTGGGGCAAAATCTTCTGCAACTTCTaGTATCGTTCAGTGCCACTT +
Preference number: 4 (lower is better)
Translates to: AKGWELEEMKKAGLGWGKIFCNF*YRSVPL
Trigger: AAGTGGCACTGAACGATACCAGAAGTTGCAGAAGAT...TTTGCCCCAGCCCAGGCCTGCCTTCTTCATTTCTTCGAGCTCCCAGCCCTTAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CCA 90 bp AGGAGTCAATACTGGAGGCTGGAGAGAGCACATGGGGTATACAGTGGGTACAATCTTTGGGCCTGGTCCTaGGGGTCCATCTTAGTCATC +
Preference number: 4 (lower is better)
Translates to: RSQYWRLERAHGVYSGYNLWAWS*GSILVI
Trigger: GATGACTAAGATGGACCCCCAGGACCAGGCCCAAAG...ATTGTACCCACTGTATACCCCATGTGCTCTCTCCAGCCTCCAGTATTGACTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CCA 90 bp CACTACATGGGGCTTGGACAGTTGACGCCAGAAGTATCCAACTTGAGGCACGGGTTCATCCTCTCAGACTaGCGGATTTTCAGGATCTCG +
Preference number: 4 (lower is better)
Translates to: HYMGLGQLTPEVSNLRHGFILSD*RIFRIS
Trigger: CGAGATCCTGAAAATCCGCCAGTCTGAGAGGATGAA...CCCGTGCCTCAAGTTGGATACTTCTGGCGTCAACTGTCCAAGCCCCATGTAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR TCA 90 bp TTTGTGCTTTCTGCTAAGGGCTGGGAGCTCGAAGAAATGAAGAAGGCAGGCCTGGTGAAGAACATCGGGTaGAAGTCGTTGCAGGTCTCA +
Preference number: 4 (lower is better)
Translates to: FVLSAKGWELEEMKKAGLVKNIG*KSLQVS
Trigger: TGAGACCTGCAACGACTTTCACCCGATGTTCTTCAC...CAGGCCTGCCTTCTTCATTTCTTCGAGCTCCCAGCCCTTAGCAGAAAGCACAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR TCA 90 bp CAGGAGGTGCATCTCTTAAACTTTGAAGTGAAAAGTGCTCTGCCTCTATCCACTCCAGCAGGCGAAGCTTaGTCTCCATGCTCAGCAGGG +
Preference number: 4 (lower is better)
Translates to: QEVHLLNFEVKSALPLSTPAGEA*SPCSAG
Trigger: CCCTGCTGAGCATGGAGATCAAGCTTCGCCTGCTGG...AGTGGATAGAGGCAGAGCACTTTTCACTTCAAAGTTTAAGAGATGCACCTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CCA 90 bp GCTAAGGGCTGGGAGCTCGAAGAAATGAAGAAGGCAGGCCTGGGCTGGGGCAAAGACAGTGGCTTTTTCTaGTCAATCTCCATGAGTTTA +
Preference number: 4 (lower is better)
Translates to: AKGWELEEMKKAGLGWGKDSGFF*SISMSL
Trigger: TAAACTCATGGAGATTGACCAGAAAAAGCCACTGTC...TTTGCCCCAGCCCAGGCCTGCCTTCTTCATTTCTTCGAGCTCCCAGCCCTTAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CCA 90 bp CTTTCTGCTAAGGGCTGGGAGCTCGAAGAAATGAAGAAGGCAGGCCTGGGCTGGGGATTGAGATGTCTATaGCAGACTTGTTCACAAAGC +
Preference number: 4 (lower is better)
Translates to: LSAKGWELEEMKKAGLGWGLRCL*QTCSQS
Trigger: GCTTTGTGAACAAGTCTGCCATAGACATCTCAATCC...CCAGCCCAGGCCTGCCTTCTTCATTTCTTCGAGCTCCCAGCCCTTAGCAGAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR CAA 72 bp CAGGATTCTTGTTTGCACTACATGGGGCTTGGACAGTaGACGCCAGAAGTATCCAACTTGAGGCACGGGTCT +
Preference number: 4 (lower is better)
Translates to: QDSCLHYMGLGQ*TPEVSNLRHGS
Trigger: AGACCCGTGCCTCAAGTTGGATACTTCTGGCGTCAACTGTCCAAGCCCCATGTAGTGCAAACAAGAATCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR TCA 90 bp GCAGTAAGGAACCTTGGCCTCTTTCCAACCATGGAAGAAGTCTTGCAGGTTTTGGGACCGCTGGAGGATTaGGATGTCTATGGCAGACTT +
Preference number: 4 (lower is better)
Translates to: AVRNLGLFPTMEEVLQVLGPLED*DVYGRL
Trigger: AAGTCTGCCATAGACATCTCAATCCTCCAGCGGTCC...CAAAACCTGCAAGACTTCTTCCATGGTTGGAAAGAGGCCAAGGTTCCTTACTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR GCA 90 bp CAGGAGGTGCATCTCTTAAACTTTGAAGTGAAAAGTGCTCTGCCTCTATCCACTTGGTCAGCTCTATACTaGTGCGGCCGAAGGGGCACT +
Preference number: 4 (lower is better)
Translates to: QEVHLLNFEVKSALPLSTWSALY*CGRRGT
Trigger: AGTGCCCCTTCGGCCGCAGCAGTATAGAGCTGACCA...AGTGGATAGAGGCAGAGCACTTTTCACTTCAAAGTTTAAGAGATGCACCTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CCA 90 bp ATTCTGGGGTCCTACAGTGCAGGAGTGTGTGGATACAGTTCACAAGATTGTATACGCCAGGCCATTCTATaGCCACCTTCACGATGTCCG +
Preference number: 4 (lower is better)
Translates to: ILGSYSAGVCGYSSQDCIRQAIL*PPSRCP
Trigger: CGGACATCGTGAAGGTGGCCATAGAATGGCCTGGCG...TATACAATCTTGTGAACTGTATCCACACACTCCTGCACTGTAGGACCCCAGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CCA 90 bp AGGAGTCAATACTGGAGGCTGGAGAGAGCACATGGGGTATACAGTGGGTACAATATGGCCAAGGACCGCTaGAGGATTGAGATGTCTATG +
Preference number: 4 (lower is better)
Translates to: RSQYWRLERAHGVYSGYNMAKDR*RIEMSM
Trigger: CATAGACATCTCAATCCTCCAGCGGTCCTTGGCCAT...ATTGTACCCACTGTATACCCCATGTGCTCTCTCCAGCCTCCAGTATTGACTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CCA 90 bp AATGTAGCAGTAAGGAACCTTGGCCTCTTTCCAACCATGGAAGAAGTCTTGCAGAATATGATGTCCCTTTaGGCCTGGTCCTGGGGGTCC +
Preference number: 4 (lower is better)
Translates to: NVAVRNLGLFPTMEEVLQNMMSL*AWSWGS
Trigger: GGACCCCCAGGACCAGGCCCAAAGGGACATCATATT...CTGCAAGACTTCTTCCATGGTTGGAAAGAGGCCAAGGTTCCTTACTGCTACATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR CCA 90 bp GCTAAGGGCTGGGAGCTCGAAGAAATGAAGAAGGCAGGCCTGGGCTGGGGCAAATTGAGTCGTATAAGATaGAGAAAGCAAGTTCAAGCA +
Preference number: 4 (lower is better)
Translates to: AKGWELEEMKKAGLGWGKLSRIR*RKQVQA
Trigger: TGCTTGAACTTGCTTTCTCCATCTTATACGACTCAA...TTTGCCCCAGCCCAGGCCTGCCTTCTTCATTTCTTCGAGCTCCCAGCCCTTAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR TCA 90 bp GGCCAACCTGTAATTGACCATCTTGACAGCCACAAAGAGCAGTCACCTGCATGTTTTCCACCATCTGAGTaGGAAGTGAGATGCCATCCA +
Preference number: 4 (lower is better)
Translates to: GQPVIDHLDSHKEQSPACFPPSE*EVRCHP
Trigger: TGGATGGCATCTCACTTCTCACTCAGATGGTGGAAA...ACATGCAGGTGACTGCTCTTTGTGGCTGTCAAGATGGTCAATTACAGGTTGGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR TCA 90 bp GCAGTAAGGAACCTTGGCCTCTTTCCAACCATGGAAGAAGTCTTGCAGGTTTTGGACACTGGCAGTATCTaGGAGAAGCCAGCATGCTTA +
Preference number: 4 (lower is better)
Translates to: AVRNLGLFPTMEEVLQVLDTGSI*EKPACL
Trigger: TAAGCATGCTGGCTTCTCTCAGATACTGCCAGTGTC...CAAAACCTGCAAGACTTCTTCCATGGTTGGAAAGAGGCCAAGGTTCCTTACTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR CCA 90 bp TTTGTGCTTTCTGCTAAGGGCTGGGAGCTCGAAGAAATGAAGAAGGCAGGCCTGTCAGGGCTTCCAACTTaGCATCCATACTTGATGACT +
Preference number: 4 (lower is better)
Translates to: FVLSAKGWELEEMKKAGLSGLPT*HPYLMT
Trigger: AGTCATCAAGTATGGATGCCAAGTTGGAAGCCCTGA...CAGGCCTGCCTTCTTCATTTCTTCGAGCTCCCAGCCCTTAGCAGAAAGCACAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CCA 90 bp ATGAAGCAATGTAGCAGTAAGGAACCTTGGCCTCTTTCCAACCATGGAAGAAGTCCATTGACTCCAGAATaGCCAAGGACCGCTGGAGGA +
Preference number: 4 (lower is better)
Translates to: MKQCSSKEPWPLSNHGRSPLTPE*PRTAGG
Trigger: TCCTCCAGCGGTCCTTGGCCATTCTGGAGTCAATGG...ACTTCTTCCATGGTTGGAAAGAGGCCAAGGTTCCTTACTGCTACATTGCTTCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR CCA 90 bp CACTACATGGGGCTTGGACAGTTGACGCCAGAAGTATCCAACTTGAGGCACGGGTGGAGAACATATAACTaGTGTGCCATCTCATTGTTG +
Preference number: 4 (lower is better)
Translates to: HYMGLGQLTPEVSNLRHGWRTYN*CAISLL
Trigger: CAACAATGAGATGGCACACCAGTTATATGTTCTCCA...CCCGTGCCTCAAGTTGGATACTTCTGGCGTCAACTGTCCAAGCCCCATGTAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CCA 90 bp AGGAGTCAATACTGGAGGCTGGAGAGAGCACATGGGGTATACAGTGGGTACAATAATCCCGAGTGTACATaGACTTGCGTTTCTCCATGC +
Preference number: 4 (lower is better)
Translates to: RSQYWRLERAHGVYSGYNNPECT*TCVSPC
Trigger: GCATGGAGAAACGCAAGTCCATGTACACTCGGGATT...ATTGTACCCACTGTATACCCCATGTGCTCTCTCCAGCCTCCAGTATTGACTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR TCA 90 bp GCAGTAAGGAACCTTGGCCTCTTTCCAACCATGGAAGAAGTCTTGCAGGTTTTGTTTCCACCATCTGAGTaGGAAGTGAGATGCCATCCA +
Preference number: 4 (lower is better)
Translates to: AVRNLGLFPTMEEVLQVLFPPSE*EVRCHP
Trigger: TGGATGGCATCTCACTTCTCACTCAGATGGTGGAAA...CAAAACCTGCAAGACTTCTTCCATGGTTGGAAAGAGGCCAAGGTTCCTTACTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR TCA 90 bp GCAGTAAGGAACCTTGGCCTCTTTCCAACCATGGAAGAAGTCTTGCAGGTTTTGACTGTTGAGAACCATTaGCTCCAGAATGGCCAAGGA +
Preference number: 4 (lower is better)
Translates to: AVRNLGLFPTMEEVLQVLTVENH*LQNGQG
Trigger: TCCTTGGCCATTCTGGAGTCAATGGTTCTCAACAGT...CAAAACCTGCAAGACTTCTTCCATGGTTGGAAAGAGGCCAAGGTTCCTTACTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR TCA 90 bp CAGGAGGTGCATCTCTTAAACTTTGAAGTGAAAAGTGCTCTGCCTCTATCCACTCCGTCACCACTGCTTTaGTATCTGCCACCGGCAATT +
Preference number: 4 (lower is better)
Translates to: QEVHLLNFEVKSALPLSTPSPLL*YLPPAI
Trigger: AATTGCCGGTGGCAGATATCAAAGCAGTGGTGACGG...AGTGGATAGAGGCAGAGCACTTTTCACTTCAAAGTTTAAGAGATGCACCTCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR GCA 90 bp GTGTCCTTAAGACGCTGTCAGTCTATGAAAAGGTGTGTCTTCCATACAAAAGCTTCAGCTCTATACTGCTaGGGCCGAAGGGGCACTCAT +
Preference number: 4 (lower is better)
Translates to: VSLRRCQSMKRCVFHTKASALYC*GRRGTH
Trigger: ATGAGTGCCCCTTCGGCCGCAGCAGTATAGAGCTGA...AGCTTTTGTATGGAAGACACACCTTTTCATAGACTGACAGCGTCTTAAGGACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CCA 90 bp ACATGTCCCCTTGGTGTCAGTAGTGTCTTTAATTGGACTGGCTCTATAAGTCATAATATGATGTCCCTTTaGGCCTGGTCCTGGGGGTCC +
Preference number: 4 (lower is better)
Translates to: TCPLGVSSVFNWTGSISHNMMSL*AWSWGS
Trigger: GGACCCCCAGGACCAGGCCCAAAGGGACATCATATT...ATGACTTATAGAGCCAGTCCAATTAAAGACACTACTGACACCAAGGGGACATGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR TCA 90 bp AATGTAGCAGTAAGGAACCTTGGCCTCTTTCCAACCATGGAAGAAGTCTTGCAGAGGTTTATGAACTCCTaGGCAAAGGTAACATCCCGG +
Preference number: 4 (lower is better)
Translates to: NVAVRNLGLFPTMEEVLQRFMNS*AKVTSR
Trigger: CCGGGATGTTACCTTTGCTCAGGAGTTCATAAACCT...CTGCAAGACTTCTTCCATGGTTGGAAAGAGGCCAAGGTTCCTTACTGCTACATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR TCA 90 bp GTGTCCTTAAGACGCTGTCAGTCTATGAAAAGGTGTGTCTTCCATACAAAAGCTGGACCGCTGGAGGATTaGGATGTCTATGGCAGACTT +
Preference number: 4 (lower is better)
Translates to: VSLRRCQSMKRCVFHTKAGPLED*DVYGRL
Trigger: AAGTCTGCCATAGACATCTCAATCCTCCAGCGGTCC...AGCTTTTGTATGGAAGACACACCTTTTCATAGACTGACAGCGTCTTAAGGACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR TCA 90 bp CTCATTTCCTTGGTGAGTTGGGGTGTGCATCCTAGAAATGATATCGGCAATGCTACTGTTGAGAACCATTaGCTCCAGAATGGCCAAGGA +
Preference number: 4 (lower is better)
Translates to: LISLVSWGVHPRNDIGNATVENH*LQNGQG
Trigger: TCCTTGGCCATTCTGGAGTCAATGGTTCTCAACAGT...AGCATTGCCGATATCATTTCTAGGATGCACACCCCAACTCACCAAGGAAATGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR TCA 90 bp TCCAACCATGGAAGAAGTCTTGCAGGTTTTGAGATTTTCCAGGATTTGAGTATAGTGCCATCTCATTGTTaGTGGCCCGCTGTGCTCGGA +
Preference number: 4 (lower is better)
Translates to: SNHGRSLAGFEIFQDLSIVPSHC*WPAVLG
Trigger: TCCGAGCACAGCGGGCCATCAACAATGAGATGGCAC...TATACTCAAATCCTGGAAAATCTCAAAACCTGCAAGACTTCTTCCATGGTTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR GCA 90 bp GCAGTAAGGAACCTTGGCCTCTTTCCAACCATGGAAGAAGTCTTGCAGGTTTTGATCAGCGTGCTGCAGTaGAAAATATTCATGGTTGGC +
Preference number: 4 (lower is better)
Translates to: AVRNLGLFPTMEEVLQVLISVLQ*KIFMVG
Trigger: GCCAACCATGAATATTTTGCACTGCAGCACGCTGAT...CAAAACCTGCAAGACTTCTTCCATGGTTGGAAAGAGGCCAAGGTTCCTTACTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR GCA 90 bp CAGGAGGTGCATCTCTTAAACTTTGAAGTGAAAAGTGCTCTGCCTCTATCCACTGAGTGTACATGGACTTaGGTTTCTCCATGCTGCCAC +
Preference number: 4 (lower is better)
Translates to: QEVHLLNFEVKSALPLSTECTWT*VSPCCH
Trigger: GTGGCAGCATGGAGAAACGCAAGTCCATGTACACTC...AGTGGATAGAGGCAGAGCACTTTTCACTTCAAAGTTTAAGAGATGCACCTCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR GCA 90 bp TGGCCTCTTTCCAACCATGGAAGAAGTCTTGCAGGTTTTGAGATTTTCCAGGATGAGTGTACATGGACTTaGGTTTCTCCATGCTGCCAC +
Preference number: 4 (lower is better)
Translates to: WPLSNHGRSLAGFEIFQDECTWT*VSPCCH
Trigger: GTGGCAGCATGGAGAAACGCAAGTCCATGTACACTC...ATCCTGGAAAATCTCAAAACCTGCAAGACTTCTTCCATGGTTGGAAAGAGGCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR CCA 90 bp TCCAACCATGGAAGAAGTCTTGCAGGTTTTGAGATTTTCCAGGATTTGAGTATACGCCAGGCCATTCTATaGCCACCTTCACGATGTCCG +
Preference number: 4 (lower is better)
Translates to: SNHGRSLAGFEIFQDLSIRQAIL*PPSRCP
Trigger: CGGACATCGTGAAGGTGGCCATAGAATGGCCTGGCG...TATACTCAAATCCTGGAAAATCTCAAAACCTGCAAGACTTCTTCCATGGTTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR CCA 90 bp GCAGTAAGGAACCTTGGCCTCTTTCCAACCATGGAAGAAGTCTTGCAGGTTTTGTCAGGGCTTCCAACTTaGCATCCATACTTGATGACT +
Preference number: 4 (lower is better)
Translates to: AVRNLGLFPTMEEVLQVLSGLPT*HPYLMT
Trigger: AGTCATCAAGTATGGATGCCAAGTTGGAAGCCCTGA...CAAAACCTGCAAGACTTCTTCCATGGTTGGAAAGAGGCCAAGGTTCCTTACTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR CCA 90 bp TGGCCTCTTTCCAACCATGGAAGAAGTCTTGCAGGTTTTGAGATTTTCCAGGATATGGCCAAGGACCGCTaGAGGATTGAGATGTCTATG +
Preference number: 4 (lower is better)
Translates to: WPLSNHGRSLAGFEIFQDMAKDR*RIEMSM
Trigger: CATAGACATCTCAATCCTCCAGCGGTCCTTGGCCAT...ATCCTGGAAAATCTCAAAACCTGCAAGACTTCTTCCATGGTTGGAAAGAGGCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR CCA 90 bp AATGTAGCAGTAAGGAACCTTGGCCTCTTTCCAACCATGGAAGAAGTCTTGCAGAATCCCGAGTGTACATaGACTTGCGTTTCTCCATGC +
Preference number: 4 (lower is better)
Translates to: NVAVRNLGLFPTMEEVLQNPECT*TCVSPC
Trigger: GCATGGAGAAACGCAAGTCCATGTACACTCGGGATT...CTGCAAGACTTCTTCCATGGTTGGAAAGAGGCCAAGGTTCCTTACTGCTACATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR CCA 90 bp CTCATTTCCTTGGTGAGTTGGGGTGTGCATCCTAGAAATGATATCGGCAATGCTTCTCACACAGCATCTTaGTCAGCTCTATACTGCTGC +
Preference number: 4 (lower is better)
Translates to: LISLVSWGVHPRNDIGNASHTAS*SALYCC
Trigger: GCAGCAGTATAGAGCTGACCAAGATGCTGTGTGAGA...AGCATTGCCGATATCATTTCTAGGATGCACACCCCAACTCACCAAGGAAATGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CCA 90 bp CTCATTTCCTTGGTGAGTTGGGGTGTGCATCCTAGAAATGATATCGGCAATGCTAGCTTGCTTTTGAACTaGTCCAGGGAACTAGGCTTG +
Preference number: 4 (lower is better)
Translates to: LISLVSWGVHPRNDIGNASLLLN*SRELGL
Trigger: CAAGCCTAGTTCCCTGGACCAGTTCAAAAGCAAGCT...AGCATTGCCGATATCATTTCTAGGATGCACACCCCAACTCACCAAGGAAATGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
3UTR CAA 72 bp AATTTCTCTTGGTTTGGTGAGCAAATATGGGGCAGCTaGGGGCTAACTGGCTTTCCTACTCCAGGCAAGAAT +
Preference number: 4 (lower is better)
Translates to: NFSWFGEQIWGS*GLTGFPTPGKN
Trigger: ATTCTTGCCTGGAGTAGGAAAGCCAGTTAGCCCCAAGCTGCCCCATATTTGCTCACCAAACCAAGAGAAATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR TCA 90 bp AATGTAGCAGTAAGGAACCTTGGCCTCTTTCCAACCATGGAAGAAGTCTTGCAGAGAGGTCATGACTGTTaGGAACCATTGACTCCAGAA +
Preference number: 4 (lower is better)
Translates to: NVAVRNLGLFPTMEEVLQRGHDC*EPLTPE
Trigger: TTCTGGAGTCAATGGTTCTCAACAGTCATGACCTCT...CTGCAAGACTTCTTCCATGGTTGGAAAGAGGCCAAGGTTCCTTACTGCTACATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR GCA 90 bp CCAGGTGATGGATATGCTGGAGTAGCAAGCGCCCACATTACTAAATCAAAACACATCAGCGTGCTGCAGTaGAAAATATTCATGGTTGGC +
Preference number: 4 (lower is better)
Translates to: PGDGYAGVASAHITKSKHISVLQ*KIFMVG
Trigger: GCCAACCATGAATATTTTGCACTGCAGCACGCTGAT...GTGTTTTGATTTAGTAATGTGGGCGCTTGCTACTCCAGCATATCCATCACCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR GCA 90 bp AATGTAGCAGTAAGGAACCTTGGCCTCTTTCCAACCATGGAAGAAGTCTTGCAGTATGCATCCTGGTGGTaGTTAGCGAAATACAGCATG +
Preference number: 4 (lower is better)
Translates to: NVAVRNLGLFPTMEEVLQYASWW*LAKYSM
Trigger: CATGCTGTATTTCGCTAAGCACCACCAGGATGCATA...CTGCAAGACTTCTTCCATGGTTGGAAAGAGGCCAAGGTTCCTTACTGCTACATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR GCA 90 bp AGCCATAAAAAGATAAAATACAGTCACTTTCAACACCTCGGGTGGGACTGGAAGAGCGCTCTCATAACCTaGTCCTTCACCACCTGCATT +
Preference number: 4 (lower is better)
Translates to: SHKKIKYSHFQHLGWDWKSALIT*SFTTCI
Trigger: AATGCAGGTGGTGAAGGAGCAGGTTATGAGAGCGCT...CTTCCAGTCCCACCCGAGGTGTTGAAAGTGACTGTATTTTATCTTTTTATGGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CCA 90 bp TCCAACCATGGAAGAAGTCTTGCAGGTTTTGAGATTTTCCAGGATTTGAGTATACTTTGGGCCTGGTCCTaGGGGTCCATCTTAGTCATC +
Preference number: 4 (lower is better)
Translates to: SNHGRSLAGFEIFQDLSILWAWS*GSILVI
Trigger: GATGACTAAGATGGACCCCCAGGACCAGGCCCAAAG...TATACTCAAATCCTGGAAAATCTCAAAACCTGCAAGACTTCTTCCATGGTTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR GCA 90 bp TCCAACCATGGAAGAAGTCTTGCAGGTTTTGAGATTTTCCAGGATTTGAGTATAGCTTACCCGGATGTATaGATCCTGGTGGTGCTTAGC +
Preference number: 4 (lower is better)
Translates to: SNHGRSLAGFEIFQDLSIAYPDV*ILVVLS
Trigger: GCTAAGCACCACCAGGATGCATACATCCGGGTAAGC...TATACTCAAATCCTGGAAAATCTCAAAACCTGCAAGACTTCTTCCATGGTTGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR CCA 90 bp TGGCCTCTTTCCAACCATGGAAGAAGTCTTGCAGGTTTTGAGATTTTCCAGGATATGTATGCATCCTGGTaGTGCTTAGCGAAATACAGC +
Preference number: 4 (lower is better)
Translates to: WPLSNHGRSLAGFEIFQDMYASW*CLAKYS
Trigger: GCTGTATTTCGCTAAGCACCACCAGGATGCATACAT...ATCCTGGAAAATCTCAAAACCTGCAAGACTTCTTCCATGGTTGGAAAGAGGCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
3UTR CAA 72 bp ACAGAACTTGGACTTCATGATAAACAGGATTCTTGTTaGCACTACATGGGGCTTGGACAGTTGACGCCAGAA +
Preference number: 4 (lower is better)
Translates to: TELGLHDKQDSC*HYMGLGQLTPE
Trigger: TTCTGGCGTCAACTGTCCAAGCCCCATGTAGTGCAAACAAGAATCCTGTTTATCATGAAGTCCAAGTTCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR TCA 90 bp GTGTCCTTAAGACGCTGTCAGTCTATGAAAAGGTGTGTCTTCCATACAAAAGCTAGAGGTCATGACTGTTaGGAACCATTGACTCCAGAA +
Preference number: 4 (lower is better)
Translates to: VSLRRCQSMKRCVFHTKARGHDC*EPLTPE
Trigger: TTCTGGAGTCAATGGTTCTCAACAGTCATGACCTCT...AGCTTTTGTATGGAAGACACACCTTTTCATAGACTGACAGCGTCTTAAGGACAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR TCA 90 bp ATTCTGGGGTCCTACAGTGCAGGAGTGTGTGGATACAGTTCACAAGATTGTATAGACCTTGTGATTTGGTaGAAGCCGACAATACCAAAA +
Preference number: 4 (lower is better)
Translates to: ILGSYSAGVCGYSSQDCIDLVIW*KPTIPK
Trigger: TTTTGGTATTGTCGGCTTTCACCAAATCACAAGGTC...TATACAATCTTGTGAACTGTATCCACACACTCCTGCACTGTAGGACCCCAGAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR GCA 90 bp ATGAAGCAATGTAGCAGTAAGGAACCTTGGCCTCTTTCCAACCATGGAAGAAGTGAACTATCAGCGTGCTaGAGTGCAAAATATTCATGG +
Preference number: 4 (lower is better)
Translates to: MKQCSSKEPWPLSNHGRSELSAC*SAKYSW
Trigger: CCATGAATATTTTGCACTGCAGCACGCTGATAGTTC...ACTTCTTCCATGGTTGGAAAGAGGCCAAGGTTCCTTACTGCTACATTGCTTCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR GCA 90 bp TTTGAAGTGAAAAGTGCTCTGCCTCTATCCACTTCCTTTTATCTAACTTATCACGTCCTTCCCAAGCAGTaGATTCAGCCCATCTGTCCA +
Preference number: 4 (lower is better)
Translates to: FEVKSALPLSTSFYLTYHVLPKQ*IQPICP
Trigger: TGGACAGATGGGCTGAATGCACTGCTTGGGAAGGAC...GTGATAAGTTAGATAAAAGGAAGTGGATAGAGGCAGAGCACTTTTCACTTCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CCA 90 bp ATGAAGCAATGTAGCAGTAAGGAACCTTGGCCTCTTTCCAACCATGGAAGAAGTAGTGCAAAATATTCATaGTTGGCAAGAGACCACCCA +
Preference number: 4 (lower is better)
Translates to: MKQCSSKEPWPLSNHGRSSAKYS*LARDHP
Trigger: TGGGTGGTCTCTTGCCAACCATGAATATTTTGCACT...ACTTCTTCCATGGTTGGAAAGAGGCCAAGGTTCCTTACTGCTACATTGCTTCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR CCA 90 bp GGTTTAGTTTATCAGAGATGGAGCAGGACTACTGACTTCATTTGTGCTTTCTGCATGTATGCATCCTGGTaGTGCTTAGCGAAATACAGC +
Preference number: 4 (lower is better)
Translates to: GLVYQRWSRTTDFICAFCMYASW*CLAKYS
Trigger: GCTGTATTTCGCTAAGCACCACCAGGATGCATACAT...GCAGAAAGCACAAATGAAGTCAGTAGTCCTGCTCCATCTCTGATAAACTAAACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CCA 90 bp GGTTTAGTTTATCAGAGATGGAGCAGGACTACTGACTTCATTTGTGCTTTCTGCAAAATCGGGCGAGACTaGAAATCTTCCTGGTTCATC +
Preference number: 4 (lower is better)
Translates to: GLVYQRWSRTTDFICAFCKIGRD*KSSWFI
Trigger: GATGAACCAGGAAGATTTCCAGTCTCGCCCGATTTT...GCAGAAAGCACAAATGAAGTCAGTAGTCCTGCTCCATCTCTGATAAACTAAACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CCA 90 bp TGGCCTCTTTCCAACCATGGAAGAAGTCTTGCAGGTTTTGAGATTTTCCAGGATCTACTGTGCGTAGGTTaGAAAACAGAATTCCATACG +
Preference number: 4 (lower is better)
Translates to: WPLSNHGRSLAGFEIFQDLLCVG*KTEFHT
Trigger: CGTATGGAATTCTGTTTTCCAACCTACGCACAGTAG...ATCCTGGAAAATCTCAAAACCTGCAAGACTTCTTCCATGGTTGGAAAGAGGCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
3UTR CAA 72 bp ATTGGCTTTGGCGTAACTGATTTCAGGTGTGTAGGTTaGTATTCTTTTTCCGTGGTTCAACATGTCCCCTTG +
Preference number: 4 (lower is better)
Translates to: IGFGVTDFRCVG*YSFSVVQHVPL
Trigger: CAAGGGGACATGTTGAACCACGGAAAAAGAATACAAACCTACACACCTGAAATCAGTTACGCCAAAGCCAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR TCA 90 bp TTTGAAGTGAAAAGTGCTCTGCCTCTATCCACTTCCTTTTATCTAACTTATCACCCACTTTCCACCATCTaGGTGAGAAGTGAGATGCCA +
Preference number: 4 (lower is better)
Translates to: FEVKSALPLSTSFYLTYHPLSTI*VRSEMP
Trigger: TGGCATCTCACTTCTCACTCAGATGGTGGAAAGTGG...GTGATAAGTTAGATAAAAGGAAGTGGATAGAGGCAGAGCACTTTTCACTTCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR GCA 90 bp AGCCATAAAAAGATAAAATACAGTCACTTTCAACACCTCGGGTGGGACTGGAAGGAACTATCAGCGTGCTaGAGTGCAAAATATTCATGG +
Preference number: 4 (lower is better)
Translates to: SHKKIKYSHFQHLGWDWKELSAC*SAKYSW
Trigger: CCATGAATATTTTGCACTGCAGCACGCTGATAGTTC...CTTCCAGTCCCACCCGAGGTGTTGAAAGTGACTGTATTTTATCTTTTTATGGCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR GCA 90 bp TGGCCTCTTTCCAACCATGGAAGAAGTCTTGCAGGTTTTGAGATTTTCCAGGATAGCTTTGAGGAAAAGTaGGTTGATTACAGCAATGGT +
Preference number: 4 (lower is better)
Translates to: WPLSNHGRSLAGFEIFQDSFEEK*VDYSNG
Trigger: ACCATTGCTGTAATCAACGCACTTTTCCTCAAAGCT...ATCCTGGAAAATCTCAAAACCTGCAAGACTTCTTCCATGGTTGGAAAGAGGCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR CCA 90 bp TGGCCTCTTTCCAACCATGGAAGAAGTCTTGCAGGTTTTGAGATTTTCCAGGATGACAGTGGCTTTTTCTaGTCAATCTCCATGAGTTTA +
Preference number: 4 (lower is better)
Translates to: WPLSNHGRSLAGFEIFQDDSGFF*SISMSL
Trigger: TAAACTCATGGAGATTGACCAGAAAAAGCCACTGTC...ATCCTGGAAAATCTCAAAACCTGCAAGACTTCTTCCATGGTTGGAAAGAGGCCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR CCA 90 bp CAGGAGGTGCATCTCTTAAACTTTGAAGTGAAAAGTGCTCTGCCTCTATCCACTTATAATGGCAGACAGTaGCTTTTTCTGGTCAATCTC +
Preference number: 4 (lower is better)
Translates to: QEVHLLNFEVKSALPLSTYNGRQ*LFLVNL
Trigger: GAGATTGACCAGAAAAAGCCACTGTCTGCCATTATA...AGTGGATAGAGGCAGAGCACTTTTCACTTCAAAGTTTAAGAGATGCACCTCCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CCA 90 bp ATGAAGCAATGTAGCAGTAAGGAACCTTGGCCTCTTTCCAACCATGGAAGAAGTTGGAGAACATATAACTaGTGTGCCATCTCATTGTTG +
Preference number: 4 (lower is better)
Translates to: MKQCSSKEPWPLSNHGRSWRTYN*CAISLL
Trigger: CAACAATGAGATGGCACACCAGTTATATGTTCTCCA...ACTTCTTCCATGGTTGGAAAGAGGCCAAGGTTCCTTACTGCTACATTGCTTCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR CCA 90 bp CTCATTTCCTTGGTGAGTTGGGGTGTGCATCCTAGAAATGATATCGGCAATGCTGCAATGAAGTTCAGTTaGCAATTTGAGTCGTATAAG +
Preference number: 4 (lower is better)
Translates to: LISLVSWGVHPRNDIGNAAMKFS*QFESYK
Trigger: CTTATACGACTCAAATTGCCAACTGAACTTCATTGC...AGCATTGCCGATATCATTTCTAGGATGCACACCCCAACTCACCAAGGAAATGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR TCA 90 bp TTTGAAGTGAAAAGTGCTCTGCCTCTATCCACTTCCTTTTATCTAACTTATCACAGGTTTATGAACTCCTaGGCAAAGGTAACATCCCGG +
Preference number: 4 (lower is better)
Translates to: FEVKSALPLSTSFYLTYHRFMNS*AKVTSR
Trigger: CCGGGATGTTACCTTTGCTCAGGAGTTCATAAACCT...GTGATAAGTTAGATAAAAGGAAGTGGATAGAGGCAGAGCACTTTTCACTTCAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR GCA 90 bp GGTTTAGTTTATCAGAGATGGAGCAGGACTACTGACTTCATTTGTGCTTTCTGCAGCTTTGAGGAAAAGTaGGTTGATTACAGCAATGGT +
Preference number: 4 (lower is better)
Translates to: GLVYQRWSRTTDFICAFCSFEEK*VDYSNG
Trigger: ACCATTGCTGTAATCAACGCACTTTTCCTCAAAGCT...GCAGAAAGCACAAATGAAGTCAGTAGTCCTGCTCCATCTCTGATAAACTAAACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR GCA 90 bp ACATGTCCCCTTGGTGTCAGTAGTGTCTTTAATTGGACTGGCTCTATAAGTCATGGAGTTGAATGCAAATaGAGAAGAATTCCTCAAAAG +
Preference number: 4 (lower is better)
Translates to: TCPLGVSSVFNWTGSISHGVECK*RRIPQK
Trigger: CTTTTGAGGAATTCTTCTGCATTTGCATTCAACTCC...ATGACTTATAGAGCCAGTCCAATTAAAGACACTACTGACACCAAGGGGACATGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR GCA 90 bp GTGTCCTTAAGACGCTGTCAGTCTATGAAAAGGTGTGTCTTCCATACAAAAGCTTGTTCAGGAGTTGAATaGAAATGCAGAAGAATTCCT +
Preference number: 4 (lower is better)
Translates to: VSLRRCQSMKRCVFHTKACSGVE*KCRRIP
Trigger: AGGAATTCTTCTGCATTTGCATTCAACTCCTGAACA...AGCTTTTGTATGGAAGACACACCTTTTCATAGACTGACAGCGTCTTAAGGACAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CCA 90 bp TCCAACCATGGAAGAAGTCTTGCAGGTTTTGAGATTTTCCAGGATTTGAGTATAATCTTCTGCAACTTCTaGTATCGTTCAGTGCCACTT +
Preference number: 4 (lower is better)
Translates to: SNHGRSLAGFEIFQDLSIIFCNF*YRSVPL
Trigger: AAGTGGCACTGAACGATACCAGAAGTTGCAGAAGAT...TATACTCAAATCCTGGAAAATCTCAAAACCTGCAAGACTTCTTCCATGGTTGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR CCA 90 bp TCCAACCATGGAAGAAGTCTTGCAGGTTTTGAGATTTTCCAGGATTTGAGTATAGGATTGAGATGTCTATaGCAGACTTGTTCACAAAGC +
Preference number: 4 (lower is better)
Translates to: SNHGRSLAGFEIFQDLSIGLRCL*QTCSQS
Trigger: GCTTTGTGAACAAGTCTGCCATAGACATCTCAATCC...TATACTCAAATCCTGGAAAATCTCAAAACCTGCAAGACTTCTTCCATGGTTGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR CCA 90 bp AGCCATAAAAAGATAAAATACAGTCACTTTCAACACCTCGGGTGGGACTGGAAGTTAAAGGTCAGCACTTaGAGAACATATAACTGGTGT +
Preference number: 4 (lower is better)
Translates to: SHKKIKYSHFQHLGWDWKLKVST*RTYNWC
Trigger: ACACCAGTTATATGTTCTCCAAGTGCTGACCTTTAA...CTTCCAGTCCCACCCGAGGTGTTGAAAGTGACTGTATTTTATCTTTTTATGGCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CCA 90 bp TTTGAAGTGAAAAGTGCTCTGCCTCTATCCACTTCCTTTTATCTAACTTATCACAGTGCAAAATATTCATaGTTGGCAAGAGACCACCCA +
Preference number: 4 (lower is better)
Translates to: FEVKSALPLSTSFYLTYHSAKYS*LARDHP
Trigger: TGGGTGGTCTCTTGCCAACCATGAATATTTTGCACT...GTGATAAGTTAGATAAAAGGAAGTGGATAGAGGCAGAGCACTTTTCACTTCAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CCA 90 bp TCCAACCATGGAAGAAGTCTTGCAGGTTTTGAGATTTTCCAGGATTTGAGTATATTAAAGGTCAGCACTTaGAGAACATATAACTGGTGT +
Preference number: 4 (lower is better)
Translates to: SNHGRSLAGFEIFQDLSILKVST*RTYNWC
Trigger: ACACCAGTTATATGTTCTCCAAGTGCTGACCTTTAA...TATACTCAAATCCTGGAAAATCTCAAAACCTGCAAGACTTCTTCCATGGTTGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR GCA 90 bp TTTGAAGTGAAAAGTGCTCTGCCTCTATCCACTTCCTTTTATCTAACTTATCACTTTGAACTATCAGCGTaGTGCAGTGCAAAATATTCA +
Preference number: 4 (lower is better)
Translates to: FEVKSALPLSTSFYLTYHFELSA*CSAKYS
Trigger: TGAATATTTTGCACTGCAGCACGCTGATAGTTCAAA...GTGATAAGTTAGATAAAAGGAAGTGGATAGAGGCAGAGCACTTTTCACTTCAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CAA 90 bp GGAAGCTGCAGCTTCCCCTCCACCCAAGGGCAGTTGCAGCATGTGGATGTGTTTGCGAAATACAGCATGTaGTCCAGAGCCAGCATCCCA +
Preference number: 5 (lower is better)
Translates to: GSCSFPSTQGQLQHVDVFAKYSM*SRASIP
Trigger: TGGGATGCTGGCTCTGGACAACATGCTGTATTTCGC...AAACACATCCACATGCTGCAACTGCCCTTGGGTGGAGGGGAAGCTGCAGCTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CAA 90 bp CTACTCCAGGCAAGAATGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGGTGGGGCACTTCTCCTaGGGGGCTCTCTTCCAAGTC +
Preference number: 5 (lower is better)
Translates to: LLQARMKEGRKEGRKEGRVGHFS*GALFQV
Trigger: GACTTGGAAGAGAGCCCCCAAGGAGAAGTGCCCCAC...CCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCATTCTTGCCTGGAGTAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS GCA 90 bp GGCACCTTTCTCTTTCATATGAGGGCAGTCCTTTCCCGTCACCACTaGTTTGATATCTGCCACCGGCAATTTGTCCTGCAGGGAATCGTG +
Preference number: 5 (lower is better)
Translates to: GTFLFHMRAVLSRHH*FDICHRQFVLQGIV
Trigger: CACGATTCCCTGCAGGACAAATTGCCGGTGGCAGATATCAAAGCAGTGGTGACGGGAAAGGACTGCCCTCATATGAAAGAGAAAGGTGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CAA 90 bp CTACTCCAGGCAAGAATGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAGGACCGCTGGAGGATaGAGATGTCTATGGCAGACT +
Preference number: 5 (lower is better)
Translates to: LLQARMKEGRKEGRKEGRRTAGG*RCLWQT
Trigger: AGTCTGCCATAGACATCTCAATCCTCCAGCGGTCCT...CCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCATTCTTGCCTGGAGTAG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CAA 90 bp CCAGGTGATGGATATGCTGGAGTAGCAAGCGCCCACATTACTAAATCAAAACACTGTGCCATCTCATTGTaGATGGCCCGCTGTGCTCGG +
Preference number: 5 (lower is better)
Translates to: PGDGYAGVASAHITKSKHCAISL*MARCAR
Trigger: CCGAGCACAGCGGGCCATCAACAATGAGATGGCACA...GTGTTTTGATTTAGTAATGTGGGCGCTTGCTACTCCAGCATATCCATCACCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CAA 90 bp GCAGTAAGGAACCTTGGCCTCTTTCCAACCATGGAAGAAGTCTTGCAGGTTTTGAAATATGATGTCCCTTaGGGCCTGGTCCTGGGGGTC +
Preference number: 5 (lower is better)
Translates to: AVRNLGLFPTMEEVLQVLKYDVP*GLVLGV
Trigger: GACCCCCAGGACCAGGCCCAAAGGGACATCATATTT...CAAAACCTGCAAGACTTCTTCCATGGTTGGAAAGAGGCCAAGGTTCCTTACTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR CAA 90 bp GGAAGCTGCAGCTTCCCCTCCACCCAAGGGCAGTTGCAGCATGTGGATGTGTTTACCACCTGCATTACCTaGTTGAAGTCTTCAGATGTT +
Preference number: 5 (lower is better)
Translates to: GSCSFPSTQGQLQHVDVFTTCIT*LKSSDV
Trigger: AACATCTGAAGACTTCAACAAGGTAATGCAGGTGGT...AAACACATCCACATGCTGCAACTGCCCTTGGGTGGAGGGGAAGCTGCAGCTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CAA 90 bp CACTACATGGGGCTTGGACAGTTGACGCCAGAAGTATCCAACTTGAGGCACGGGAAGCACCTCCTTGTTTaGTTTAAGGGCACCTTTCTC +
Preference number: 5 (lower is better)
Translates to: HYMGLGQLTPEVSNLRHGKHLLV*FKGTFL
Trigger: GAGAAAGGTGCCCTTAAACAAAACAAGGAGGTGCTT...CCCGTGCCTCAAGTTGGATACTTCTGGCGTCAACTGTCCAAGCCCCATGTAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS TCA 90 bp GTGCGTAGGTTGGAAAACAGAATTCCATACGACACTGGCAGTATCTaGGAGAAGCCAGCATGCTTACCCGGATGTATGCATCCTGGTGGT +
Preference number: 5 (lower is better)
Translates to: VRRLENRIPYDTGSI*EKPACLPGCMHPGG
Trigger: ACCACCAGGATGCATACATCCGGGTAAGCATGCTGGCTTCTCTCAGATACTGCCAGTGTCGTATGGAATTCTGTTTTCCAACCTACGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR CAA 90 bp TTTGTGCTTTCTGCTAAGGGCTGGGAGCTCGAAGAAATGAAGAAGGCAGGCCTGTTCAGGGCTTCCAACTaGGCATCCATACTTGATGAC +
Preference number: 5 (lower is better)
Translates to: FVLSAKGWELEEMKKAGLFRASN*ASILDD
Trigger: GTCATCAAGTATGGATGCCAAGTTGGAAGCCCTGAA...CAGGCCTGCCTTCTTCATTTCTTCGAGCTCCCAGCCCTTAGCAGAAAGCACAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CAA 90 bp CACTACATGGGGCTTGGACAGTTGACGCCAGAAGTATCCAACTTGAGGCACGGGAGCAATGGTGTAAGTTaGTATTTCTTGGTCTGTCCC +
Preference number: 5 (lower is better)
Translates to: HYMGLGQLTPEVSNLRHGSNGVS*YFLVCP
Trigger: GGGACAGACCAAGAAATACAAACTTACACCATTGCT...CCCGTGCCTCAAGTTGGATACTTCTGGCGTCAACTGTCCAAGCCCCATGTAGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CAA 90 bp ATGAAGCAATGTAGCAGTAAGGAACCTTGGCCTCTTTCCAACCATGGAAGAAGTTGTGCCATCTCATTGTaGATGGCCCGCTGTGCTCGG +
Preference number: 5 (lower is better)
Translates to: MKQCSSKEPWPLSNHGRSCAISL*MARCAR
Trigger: CCGAGCACAGCGGGCCATCAACAATGAGATGGCACA...ACTTCTTCCATGGTTGGAAAGAGGCCAAGGTTCCTTACTGCTACATTGCTTCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR CAA 90 bp CTCATTTCCTTGGTGAGTTGGGGTGTGCATCCTAGAAATGATATCGGCAATGCTAAATATGATGTCCCTTaGGGCCTGGTCCTGGGGGTC +
Preference number: 5 (lower is better)
Translates to: LISLVSWGVHPRNDIGNAKYDVP*GLVLGV
Trigger: GACCCCCAGGACCAGGCCCAAAGGGACATCATATTT...AGCATTGCCGATATCATTTCTAGGATGCACACCCCAACTCACCAAGGAAATGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CAA 90 bp CAGGAGGTGCATCTCTTAAACTTTGAAGTGAAAAGTGCTCTGCCTCTATCCACTGGCAGCTCGCCCACTTaGAGGATCTCACACAGCATC +
Preference number: 5 (lower is better)
Translates to: QEVHLLNFEVKSALPLSTGSSPT*RISHSI
Trigger: GATGCTGTGTGAGATCCTCAAAGTGGGCGAGCTGCC...AGTGGATAGAGGCAGAGCACTTTTCACTTCAAAGTTTAAGAGATGCACCTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CAA 90 bp TCAAACATCGTGGTTCAGAAGTCTGGAGGGGCTGTCTGCTTTGCATCTCTAACATGTCTCCGGCGAGCATaGAGTTTCCTAAAGCAGGTC +
Preference number: 5 (lower is better)
Translates to: SNIVVQKSGGAVCFASLTCLRRA*SFLKQV
Trigger: GACCTGCTTTAGGAAACTCAATGCTCGCCGGAGACA...TGTTAGAGATGCAAAGCAGACAGCCCCTCCAGACTTCTGAACCACGATGTTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CAA 90 bp CCAGGTGATGGATATGCTGGAGTAGCAAGCGCCCACATTACTAAATCAAAACACAGGGTGTCCAGGTCATaGCGTGTCAGGTCACTCATC +
Preference number: 5 (lower is better)
Translates to: PGDGYAGVASAHITKSKHRVSRS*RVRSLI
Trigger: GATGAGTGACCTGACACGCAATGACCTGGACACCCT...GTGTTTTGATTTAGTAATGTGGGCGCTTGCTACTCCAGCATATCCATCACCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CAA 90 bp TTTGTGCTTTCTGCTAAGGGCTGGGAGCTCGAAGAAATGAAGAAGGCAGGCCTGGCAAAATATTCATGGTaGGCAAGAGACCACCCATCA +
Preference number: 5 (lower is better)
Translates to: FVLSAKGWELEEMKKAGLAKYSW*ARDHPS
Trigger: TGATGGGTGGTCTCTTGCCAACCATGAATATTTTGC...CAGGCCTGCCTTCTTCATTTCTTCGAGCTCCCAGCCCTTAGCAGAAAGCACAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CAA 90 bp AATGTAGCAGTAAGGAACCTTGGCCTCTTTCCAACCATGGAAGAAGTCTTGCAGAGGACCGCTGGAGGATaGAGATGTCTATGGCAGACT +
Preference number: 5 (lower is better)
Translates to: NVAVRNLGLFPTMEEVLQRTAGG*RCLWQT
Trigger: AGTCTGCCATAGACATCTCAATCCTCCAGCGGTCCT...CTGCAAGACTTCTTCCATGGTTGGAAAGAGGCCAAGGTTCCTTACTGCTACATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR CAA 90 bp AATGTAGCAGTAAGGAACCTTGGCCTCTTTCCAACCATGGAAGAAGTCTTGCAGGCGAAATACAGCATGTaGTCCAGAGCCAGCATCCCA +
Preference number: 5 (lower is better)
Translates to: NVAVRNLGLFPTMEEVLQAKYSM*SRASIP
Trigger: TGGGATGCTGGCTCTGGACAACATGCTGTATTTCGC...CTGCAAGACTTCTTCCATGGTTGGAAAGAGGCCAAGGTTCCTTACTGCTACATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR CAA 90 bp ACATGTCCCCTTGGTGTCAGTAGTGTCTTTAATTGGACTGGCTCTATAAGTCATTCCAGCAGGCGAAGCTaGATCTCCATGCTCAGCAGG +
Preference number: 5 (lower is better)
Translates to: TCPLGVSSVFNWTGSISHSSRRS*ISMLSR
Trigger: CCTGCTGAGCATGGAGATCAAGCTTCGCCTGCTGGA...ATGACTTATAGAGCCAGTCCAATTAAAGACACTACTGACACCAAGGGGACATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CAA 90 bp AGGAGTCAATACTGGAGGCTGGAGAGAGCACATGGGGTATACAGTGGGTACAATATGTCTATGGCAGACTaGTTCACAAAGCTGGCTATC +
Preference number: 5 (lower is better)
Translates to: RSQYWRLERAHGVYSGYNMSMAD*FTKLAI
Trigger: GATAGCCAGCTTTGTGAACAAGTCTGCCATAGACAT...ATTGTACCCACTGTATACCCCATGTGCTCTCTCCAGCCTCCAGTATTGACTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CAA 90 bp TCAAACATCGTGGTTCAGAAGTCTGGAGGGGCTGTCTGCTTTGCATCTCTAACAAAGATGAGGAATGAGTaGGCCAATGGTGATCTCCTG +
Preference number: 5 (lower is better)
Translates to: SNIVVQKSGGAVCFASLTKMRNE*ANGDLL
Trigger: CAGGAGATCACCATTGGCCAACTCATTCCTCATCTT...TGTTAGAGATGCAAAGCAGACAGCCCCTCCAGACTTCTGAACCACGATGTTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS CCA 90 bp TTCTTAATGAAGGCCACTGAGAATGTATCCCATGATACAATGCCGTaGTCCATCAACTCCACAAAGGCTGTGAGAGTGAAGGACAGCATG +
Preference number: 5 (lower is better)
Translates to: FLMKATENVSHDTMP*SINSTKAVRVKDSM
Trigger: CATGCTGTCCTTCACTCTCACAGCCTTTGTGGAGTTGATGGACCACGGCATTGTATCATGGGATACATTCTCAGTGGCCTTCATTAAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072519.7
ENSMUST00000180626.2
CDS-3UTR CAA 90 bp CTCATTTCCTTGGTGAGTTGGGGTGTGCATCCTAGAAATGATATCGGCAATGCTATCTCACACAGCATCTaGGTCAGCTCTATACTGCTG +
Preference number: 5 (lower is better)
Translates to: LISLVSWGVHPRNDIGNAISHSI*VSSILL
Trigger: CAGCAGTATAGAGCTGACCAAGATGCTGTGTGAGAT...AGCATTGCCGATATCATTTCTAGGATGCACACCCCAACTCACCAAGGAAATGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CAA 90 bp GCAGTAAGGAACCTTGGCCTCTTTCCAACCATGGAAGAAGTCTTGCAGGTTTTGGTAAGTTTGTATTTCTaGGTCTGTCCCCTGAAGATG +
Preference number: 5 (lower is better)
Translates to: AVRNLGLFPTMEEVLQVLVSLYF*VCPLKM
Trigger: CATCTTCAGGGGACAGACCAAGAAATACAAACTTAC...CAAAACCTGCAAGACTTCTTCCATGGTTGGAAAGAGGCCAAGGTTCCTTACTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR CAA 90 bp AATGTAGCAGTAAGGAACCTTGGCCTCTTTCCAACCATGGAAGAAGTCTTGCAGCTCTCATCAGGAGCTTaGAGGAAAAGTGCGTTGATT +
Preference number: 5 (lower is better)
Translates to: NVAVRNLGLFPTMEEVLQLSSGA*RKSALI
Trigger: AATCAACGCACTTTTCCTCAAAGCTCCTGATGAGAG...CTGCAAGACTTCTTCCATGGTTGGAAAGAGGCCAAGGTTCCTTACTGCTACATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR CAA 90 bp ATGAAGCAATGTAGCAGTAAGGAACCTTGGCCTCTTTCCAACCATGGAAGAAGTGCAAAATATTCATGGTaGGCAAGAGACCACCCATCA +
Preference number: 5 (lower is better)
Translates to: MKQCSSKEPWPLSNHGRSAKYSW*ARDHPS
Trigger: TGATGGGTGGTCTCTTGCCAACCATGAATATTTTGC...ACTTCTTCCATGGTTGGAAAGAGGCCAAGGTTCCTTACTGCTACATTGCTTCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR CAA 90 bp ATGAAGCAATGTAGCAGTAAGGAACCTTGGCCTCTTTCCAACCATGGAAGAAGTATGTCTATGGCAGACTaGTTCACAAAGCTGGCTATC +
Preference number: 5 (lower is better)
Translates to: MKQCSSKEPWPLSNHGRSMSMAD*FTKLAI
Trigger: GATAGCCAGCTTTGTGAACAAGTCTGCCATAGACAT...ACTTCTTCCATGGTTGGAAAGAGGCCAAGGTTCCTTACTGCTACATTGCTTCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR CAA 90 bp AATGTAGCAGTAAGGAACCTTGGCCTCTTTCCAACCATGGAAGAAGTCTTGCAGAGCAATGGTGTAAGTTaGTATTTCTTGGTCTGTCCC +
Preference number: 5 (lower is better)
Translates to: NVAVRNLGLFPTMEEVLQSNGVS*YFLVCP
Trigger: GGGACAGACCAAGAAATACAAACTTACACCATTGCT...CTGCAAGACTTCTTCCATGGTTGGAAAGAGGCCAAGGTTCCTTACTGCTACATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR CAA 90 bp TCCAACCATGGAAGAAGTCTTGCAGGTTTTGAGATTTTCCAGGATTTGAGTATACGAGTGTACATGGACTaGCGTTTCTCCATGCTGCCA +
Preference number: 5 (lower is better)
Translates to: SNHGRSLAGFEIFQDLSIRVYMD*RFSMLP
Trigger: TGGCAGCATGGAGAAACGCAAGTCCATGTACACTCG...TATACTCAAATCCTGGAAAATCTCAAAACCTGCAAGACTTCTTCCATGGTTGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR CAA 90 bp CTACTCCAGGCAAGAATGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGTGTTTTGTTCAGGAGTaGAATGCAAATGCAGAAGAA +
Preference number: 5 (lower is better)
Translates to: LLQARMKEGRKEGRKEGRCFVQE*NANAEE
Trigger: TTCTTCTGCATTTGCATTCAACTCCTGAACAAAACA...CCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCATTCTTGCCTGGAGTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CAA 90 bp GGTTTAGTTTATCAGAGATGGAGCAGGACTACTGACTTCATTTGTGCTTTCTGCGGTGTAGCTCAGGTTTaGCAGCTTGCTTTTGAACTG +
Preference number: 5 (lower is better)
Translates to: GLVYQRWSRTTDFICAFCGVAQV*QLAFEL
Trigger: CAGTTCAAAAGCAAGCTGCAAAACCTGAGCTACACC...GCAGAAAGCACAAATGAAGTCAGTAGTCCTGCTCCATCTCTGATAAACTAAACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CAA 90 bp TTTGAAGTGAAAAGTGCTCTGCCTCTATCCACTTCCTTTTATCTAACTTATCACCCCGTCACCACTGCTTaGATATCTGCCACCGGCAAT +
Preference number: 5 (lower is better)
Translates to: FEVKSALPLSTSFYLTYHPVTTA*ISATGN
Trigger: ATTGCCGGTGGCAGATATCAAAGCAGTGGTGACGGG...GTGATAAGTTAGATAAAAGGAAGTGGATAGAGGCAGAGCACTTTTCACTTCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CAA 90 bp TCAAACATCGTGGTTCAGAAGTCTGGAGGGGCTGTCTGCTTTGCATCTCTAACAAGTTCAGTTGGCAATTaGAGTCGTATAAGATGGAGA +
Preference number: 5 (lower is better)
Translates to: SNIVVQKSGGAVCFASLTSSVGN*SRIRWR
Trigger: TCTCCATCTTATACGACTCAAATTGCCAACTGAACT...TGTTAGAGATGCAAAGCAGACAGCCCCTCCAGACTTCTGAACCACGATGTTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS TCA 90 bp TCAGCCCATCTGTCCAGATGCAGTACTCATGCTTATCAGGAGCAATaGAGTTCAGTTGGCAATTTGAGTCGTATAAGATGGAGAAAGCAA +
Preference number: 5 (lower is better)
Translates to: SAHLSRCSTHAYQEQ*SSVGNLSRIRWRKQ
Trigger: TTGCTTTCTCCATCTTATACGACTCAAATTGCCAACTGAACTTCATTGCTCCTGATAAGCATGAGTACTGCATCTGGACAGATGGGCTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS GCA 90 bp ATTCGCCATCTCCTGTCTCCTCTCATCAGGAGCTTTGAGGAAAAGTaGGTTGATTACAGCAATGGTGTAAGTTTGTATTTCTTGGTCTGT +
Preference number: 5 (lower is better)
Translates to: IRHLLSPLIRSFEEK*VDYSNGVSLYFLVC
Trigger: ACAGACCAAGAAATACAAACTTACACCATTGCTGTAATCAACGCACTTTTCCTCAAAGCTCCTGATGAGAGGAGACAGGAGATGGCGAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072519.7
ENSMUST00000180626.2
CDS-3UTR CAA 90 bp AATGTAGCAGTAAGGAACCTTGGCCTCTTTCCAACCATGGAAGAAGTCTTGCAGACTTGGCATCCATACTaGATGACTGTATTCGTTCAT +
Preference number: 5 (lower is better)
Translates to: NVAVRNLGLFPTMEEVLQTWHPY*MTVFVH
Trigger: ATGAACGAATACAGTCATCAAGTATGGATGCCAAGT...CTGCAAGACTTCTTCCATGGTTGGAAAGAGGCCAAGGTTCCTTACTGCTACATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR CAA 90 bp GTGTCCTTAAGACGCTGTCAGTCTATGAAAAGGTGTGTCTTCCATACAAAAGCTCTCTCATCAGGAGCTTaGAGGAAAAGTGCGTTGATT +
Preference number: 5 (lower is better)
Translates to: VSLRRCQSMKRCVFHTKALSSGA*RKSALI
Trigger: AATCAACGCACTTTTCCTCAAAGCTCCTGATGAGAG...AGCTTTTGTATGGAAGACACACCTTTTCATAGACTGACAGCGTCTTAAGGACAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CAA 90 bp TTTGAAGTGAAAAGTGCTCTGCCTCTATCCACTTCCTTTTATCTAACTTATCACCGAGTGTACATGGACTaGCGTTTCTCCATGCTGCCA +
Preference number: 5 (lower is better)
Translates to: FEVKSALPLSTSFYLTYHRVYMD*RFSMLP
Trigger: TGGCAGCATGGAGAAACGCAAGTCCATGTACACTCG...GTGATAAGTTAGATAAAAGGAAGTGGATAGAGGCAGAGCACTTTTCACTTCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CAA 90 bp ACATGTCCCCTTGGTGTCAGTAGTGTCTTTAATTGGACTGGCTCTATAAGTCATACCTGCATTACCTTGTaGAAGTCTTCAGATGTTGCC +
Preference number: 5 (lower is better)
Translates to: TCPLGVSSVFNWTGSISHTCITL*KSSDVA
Trigger: GGCAACATCTGAAGACTTCAACAAGGTAATGCAGGT...ATGACTTATAGAGCCAGTCCAATTAAAGACACTACTGACACCAAGGGGACATGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CAA 90 bp AGCCATAAAAAGATAAAATACAGTCACTTTCAACACCTCGGGTGGGACTGGAAGTTTTGCAGCTTGCTTTaGAACTGGTCCAGGGAACTA +
Preference number: 5 (lower is better)
Translates to: SHKKIKYSHFQHLGWDWKFCSLL*NWSREL
Trigger: TAGTTCCCTGGACCAGTTCAAAAGCAAGCTGCAAAA...CTTCCAGTCCCACCCGAGGTGTTGAAAGTGACTGTATTTTATCTTTTTATGGCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CAA 90 bp GGTTTAGTTTATCAGAGATGGAGCAGGACTACTGACTTCATTTGTGCTTTCTGCAGTTCAAGCACCTCCTaGTTTTGTTTAAGGGCACCT +
Preference number: 5 (lower is better)
Translates to: GLVYQRWSRTTDFICAFCSSSTS*FCLRAP
Trigger: AGGTGCCCTTAAACAAAACAAGGAGGTGCTTGAACT...GCAGAAAGCACAAATGAAGTCAGTAGTCCTGCTCCATCTCTGATAAACTAAACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CAA 90 bp TCCAACCATGGAAGAAGTCTTGCAGGTTTTGAGATTTTCCAGGATTTGAGTATAAAGATGAGGAATGAGTaGGCCAATGGTGATCTCCTG +
Preference number: 5 (lower is better)
Translates to: SNHGRSLAGFEIFQDLSIKMRNE*ANGDLL
Trigger: CAGGAGATCACCATTGGCCAACTCATTCCTCATCTT...TATACTCAAATCCTGGAAAATCTCAAAACCTGCAAGACTTCTTCCATGGTTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180626.2
CDS-3UTR CAA 90 bp GTGTCCTTAAGACGCTGTCAGTCTATGAAAAGGTGTGTCTTCCATACAAAAGCTGTAAGTTTGTATTTCTaGGTCTGTCCCCTGAAGATG +
Preference number: 5 (lower is better)
Translates to: VSLRRCQSMKRCVFHTKAVSLYF*VCPLKM
Trigger: CATCTTCAGGGGACAGACCAAGAAATACAAACTTAC...AGCTTTTGTATGGAAGACACACCTTTTCATAGACTGACAGCGTCTTAAGGACAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS-3UTR CAA 90 bp ACATGTCCCCTTGGTGTCAGTAGTGTCTTTAATTGGACTGGCTCTATAAGTCATACTTGGCATCCATACTaGATGACTGTATTCGTTCAT +
Preference number: 5 (lower is better)
Translates to: TCPLGVSSVFNWTGSISHTWHPY*MTVFVH
Trigger: ATGAACGAATACAGTCATCAAGTATGGATGCCAAGT...ATGACTTATAGAGCCAGTCCAATTAAAGACACTACTGACACCAAGGGGACATGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS GCA 72 bp AGGGCAGTCCTTTCCCGTCACCACTGCTTTGATATCTaGCACCGGCAATTTGTCCTGCAGGGAATCGTGGGG +
Preference number: 6 (lower is better)
Translates to: RAVLSRHHCFDI*HRQFVLQGIVG
Trigger: CCCCACGATTCCCTGCAGGACAAATTGCCGGTGGCAGATATCAAAGCAGTGGTGACGGGAAAGGACTGCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS CAA 72 bp TATGCATCCTGGTGGTGCTTAGCGAAATACAGCATGTaGTCCAGAGCCAGCATCCCAGGAGGGGTCTGTGTG +
Preference number: 6 (lower is better)
Translates to: YASWWCLAKYSM*SRASIPGGVCV
Trigger: CACACAGACCCCTCCTGGGATGCTGGCTCTGGACAACATGCTGTATTTCGCTAAGCACCACCAGGATGCATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072519.7
ENSMUST00000180626.2
ENSMUST00000221595.3
CDS CAA 90 bp ATCCGGATGTATGCATCCTGGTGGTGCTTAGCGAAATACAGCATGTaGTCCAGAGCCAGCATCCCAGGAGGGGTCTGTGTGAAGTCCATG +
Preference number: 6 (lower is better)
Translates to: IRMYASWWCLAKYSM*SRASIPGGVCVKSM
Trigger: CATGGACTTCACACAGACCCCTCCTGGGATGCTGGCTCTGGACAACATGCTGTATTTCGCTAAGCACCACCAGGATGCATACATCCGGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072519.7
ENSMUST00000221595.3
CDS CAA 90 bp AGAGGCTGGCCAAGTCCTTCAGGGCTTCCAACTTGGCATCCATACTaGATGACTGTATTCGTTCATGGAGCTGCTGGGCATTCTGAGCTG +
Preference number: 6 (lower is better)
Translates to: RGWPSPSGLPTWHPY*MTVFVHGAAGHSEL
Trigger: CAGCTCAGAATGCCCAGCAGCTCCATGAACGAATACAGTCATCAAGTATGGATGCCAAGTTGGAAGCCCTGAAGGACTTGGCCAGCCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072519.7
ENSMUST00000180626.2
CDS TCA 72 bp TCTCCTGGGCTACCTTTTGGTAGAGGTCATGACTGTTaGGAACCATTGACTCCAGAATGGCCAAGGACCGCT +
Preference number: 6 (lower is better)
Translates to: SPGLPFGRGHDC*EPLTPEWPRTA
Trigger: AGCGGTCCTTGGCCATTCTGGAGTCAATGGTTCTCAACAGTCATGACCTCTACCAAAAGGTAGCCCAGGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072519.7
ENSMUST00000180626.2
CDS TCA 72 bp TCATATGAGGGCAGTCCTTTCCCGTCACCACTGCTTTaGTATCTGCCACCGGCAATTTGTCCTGCAGGGAAT +
Preference number: 6 (lower is better)
Translates to: SYEGSPFPSPLL*YLPPAICPAGN
Trigger: ATTCCCTGCAGGACAAATTGCCGGTGGCAGATATCAAAGCAGTGGTGACGGGAAAGGACTGCCCTCATATGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS GCA 72 bp CTCTTTCATATGAGGGCAGTCCTTTCCCGTCACCACTaGTTTGATATCTGCCACCGGCAATTTGTCCTGCAG +
Preference number: 6 (lower is better)
Translates to: LFHMRAVLSRHH*FDICHRQFVLQ
Trigger: CTGCAGGACAAATTGCCGGTGGCAGATATCAAAGCAGTGGTGACGGGAAAGGACTGCCCTCATATGAAAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS CAA 72 bp CCATTGACTCCAGAATGGCCAAGGACCGCTGGAGGATaGAGATGTCTATGGCAGACTTGTTCACAAAGCTGG +
Preference number: 6 (lower is better)
Translates to: PLTPEWPRTAGG*RCLWQTCSQSW
Trigger: CCAGCTTTGTGAACAAGTCTGCCATAGACATCTCAATCCTCCAGCGGTCCTTGGCCATTCTGGAGTCAATGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072519.7
ENSMUST00000180626.2
CDS CAA 72 bp AAGTCGTTGCAGGTCTCACTAGGCAGCTCGCCCACTTaGAGGATCTCACACAGCATCTTGGTCAGCTCTATA +
Preference number: 6 (lower is better)
Translates to: KSLQVSLGSSPT*RISHSILVSSI
Trigger: TATAGAGCTGACCAAGATGCTGTGTGAGATCCTCAAAGTGGGCGAGCTGCCTAGTGAGACCTGCAACGACTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS CAA 72 bp TGCAGCTTGCTTTTGAACTGGTCCAGGGAACTAGGCTaGGTTGTAAGCGCTCTCATAACCTGCTCCTTCACC +
Preference number: 6 (lower is better)
Translates to: CSLLLNWSRELG*VVSALITCSFT
Trigger: GGTGAAGGAGCAGGTTATGAGAGCGCTTACAACCAAGCCTAGTTCCCTGGACCAGTTCAAAAGCAAGCTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS CAA 72 bp CTGGCGGATTTTCAGGATCTCGGTGTAGCTCAGGTTTaGCAGCTTGCTTTTGAACTGGTCCAGGGAACTAGG +
Preference number: 6 (lower is better)
Translates to: LADFQDLGVAQV*QLAFELVQGTR
Trigger: CCTAGTTCCCTGGACCAGTTCAAAAGCAAGCTGCAAAACCTGAGCTACACCGAGATCCTGAAAATCCGCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS CAA 72 bp CGACAATACCAAAACTTGTCTTGTCTCCGGCGAGCATaGAGTTTCCTAAAGCAGGTCCCTTCCACAAGGCGG +
Preference number: 6 (lower is better)
Translates to: RQYQNLSCLRRA*SFLKQVPSTRR
Trigger: CCGCCTTGTGGAAGGGACCTGCTTTAGGAAACTCAATGCTCGCCGGAGACAAGACAAGTTTTGGTATTGTCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS CAA 90 bp CTCAGGTTTTGCAGCTTGCTTTTGAACTGGTCCAGGGAACTAGGCTaGGTTGTAAGCGCTCTCATAACCTGCTCCTTCACCACCTGCATT +
Preference number: 6 (lower is better)
Translates to: LRFCSLLLNWSRELG*VVSALITCSFTTCI
Trigger: AATGCAGGTGGTGAAGGAGCAGGTTATGAGAGCGCTTACAACCAAGCCTAGTTCCCTGGACCAGTTCAAAAGCAAGCTGCAAAACCTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS CAA 72 bp CCAAGTCCTTCAGGGCTTCCAACTTGGCATCCATACTaGATGACTGTATTCGTTCATGGAGCTGCTGGGCAT +
Preference number: 6 (lower is better)
Translates to: PSPSGLPTWHPY*MTVFVHGAAGH
Trigger: ATGCCCAGCAGCTCCATGAACGAATACAGTCATCAAGTATGGATGCCAAGTTGGAAGCCCTGAAGGACTTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072519.7
ENSMUST00000180626.2
CDS CAA 90 bp CTTGGGGGCTCTCTTCCAAGTCGCCATAATGTAAGACCTTGTGATTaGGTGAAAGCCGACAATACCAAAACTTGTCTTGTCTCCGGCGAG +
Preference number: 6 (lower is better)
Translates to: LGGSLPSRHNVRPCD*VKADNTKTCLVSGE
Trigger: CTCGCCGGAGACAAGACAAGTTTTGGTATTGTCGGCTTTCACCAAATCACAAGGTCTTACATTATGGCGACTTGGAAGAGAGCCCCCAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS GCA 72 bp AGGGAACTAGGCTTGGTTGTAAGCGCTCTCATAACCTaGTCCTTCACCACCTGCATTACCTTGTTGAAGTCT +
Preference number: 6 (lower is better)
Translates to: RELGLVVSALIT*SFTTCITLLKS
Trigger: AGACTTCAACAAGGTAATGCAGGTGGTGAAGGAGCAGGTTATGAGAGCGCTTACAACCAAGCCTAGTTCCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS CCA 72 bp AAGGCCACTGAGAATGTATCCCATGATACAATGCCGTaGTCCATCAACTCCACAAAGGCTGTGAGAGTGAAG +
Preference number: 6 (lower is better)
Translates to: KATENVSHDTMP*SINSTKAVRVK
Trigger: CTTCACTCTCACAGCCTTTGTGGAGTTGATGGACCACGGCATTGTATCATGGGATACATTCTCAGTGGCCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072519.7
ENSMUST00000180626.2
CDS CCA 72 bp TTGAGAACCATTGACTCCAGAATGGCCAAGGACCGCTaGAGGATTGAGATGTCTATGGCAGACTTGTTCACA +
Preference number: 6 (lower is better)
Translates to: LRTIDSRMAKDR*RIEMSMADLFT
Trigger: TGTGAACAAGTCTGCCATAGACATCTCAATCCTCCAGCGGTCCTTGGCCATTCTGGAGTCAATGGTTCTCAA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072519.7
ENSMUST00000180626.2
CDS CAA 72 bp AGCACTTGGAGAACATATAACTGGTGTGCCATCTCATaGTTGATGGCCCGCTGTGCTCGGATGACATGTGTT +
Preference number: 6 (lower is better)
Translates to: STWRTYNWCAIS*LMARCARMTCV
Trigger: AACACATGTCATCCGAGCACAGCGGGCCATCAACAATGAGATGGCACACCAGTTATATGTTCTCCAAGTGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072519.7
ENSMUST00000180626.2
ENSMUST00000221595.3
CDS CAA 72 bp GCCATCTCAGTCAGAGGGCAATCAAGGATGTCAACATaGCTCTCTACATCAACCTGTCTCCTCTCATCAGGA +
Preference number: 6 (lower is better)
Translates to: AISVRGQSRMST*LSTSTCLLSSG
Trigger: TCCTGATGAGAGGAGACAGGTTGATGTAGAGAGCAATGTTGACATCCTTGATTGCCCTCTGACTGAGATGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221595.3
CDS CAA 90 bp AGAATGGCCAAGGACCGCTGGAGGATTGAGATGTCTATGGCAGACTaGTTCACAAAGCTGGCTATCTTCTTAATGAAGGCCACTGAGAAT +
Preference number: 6 (lower is better)
Translates to: RMAKDRWRIEMSMAD*FTKLAIFLMKATEN
Trigger: ATTCTCAGTGGCCTTCATTAAGAAGATAGCCAGCTTTGTGAACAAGTCTGCCATAGACATCTCAATCCTCCAGCGGTCCTTGGCCATTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072519.7
ENSMUST00000180626.2
CDS CAA 90 bp GTAAGTTTGTATTTCTTGGTCTGTCCCCTGAAGATGAGGAATGAGTaGGCCAATGGTGATCTCCTGGGCTACCTTTTGGTAGAGGTCATG +
Preference number: 6 (lower is better)
Translates to: VSLYFLVCPLKMRNE*ANGDLLGYLLVEVM
Trigger: CATGACCTCTACCAAAAGGTAGCCCAGGAGATCACCATTGGCCAACTCATTCCTCATCTTCAGGGGACAGACCAAGAAATACAAACTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072519.7
ENSMUST00000180626.2
CDS CAA 72 bp AAGGACCGCTGGAGGATTGAGATGTCTATGGCAGACTaGTTCACAAAGCTGGCTATCTTCTTAATGAAGGCC +
Preference number: 6 (lower is better)
Translates to: KDRWRIEMSMAD*FTKLAIFLMKA
Trigger: GGCCTTCATTAAGAAGATAGCCAGCTTTGTGAACAAGTCTGCCATAGACATCTCAATCCTCCAGCGGTCCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072519.7
ENSMUST00000180626.2
CDS TCA 72 bp AACTTCTGGTATCGTTCAGTGCCACTTTCCACCATCTaGGTGAGAAGTGAGATGCCATCCAGGTTTATGAAC +
Preference number: 6 (lower is better)
Translates to: NFWYRSVPLSTI*VRSEMPSRFMN
Trigger: GTTCATAAACCTGGATGGCATCTCACTTCTCACTCAGATGGTGGAAAGTGGCACTGAACGATACCAGAAGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072519.7
ENSMUST00000180626.2
CDS CAA 90 bp TTAAAGGTCAGCACTTGGAGAACATATAACTGGTGTGCCATCTCATaGTTGATGGCCCGCTGTGCTCGGATGACATGTGTTAAAATGATG +
Preference number: 6 (lower is better)
Translates to: LKVSTWRTYNWCAIS*LMARCARMTCVKMM
Trigger: CATCATTTTAACACATGTCATCCGAGCACAGCGGGCCATCAACAATGAGATGGCACACCAGTTATATGTTCTCCAAGTGCTGACCTTTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072519.7
ENSMUST00000180626.2
ENSMUST00000221595.3
CDS CCA 72 bp CCACCCATCACAGACTTCCTTTATAATGGCAGACAGTaGCTTTTTCTGGTCAATCTCCATGAGTTTAGGGTA +
Preference number: 6 (lower is better)
Translates to: PPITDFLYNGRQ*LFLVNLHEFRV
Trigger: TACCCTAAACTCATGGAGATTGACCAGAAAAAGCCACTGTCTGCCATTATAAAGGAAGTCTGTGATGGGTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000072519.7
ENSMUST00000180626.2
CDS CCA 72 bp TTTGAACTATCAGCGTGCTGCAGTGCAAAATATTCATaGTTGGCAAGAGACCACCCATCACAGACTTCCTTT +
Preference number: 6 (lower is better)
Translates to: FELSACCSAKYS*LARDHPSQTSF
Trigger: AAAGGAAGTCTGTGATGGGTGGTCTCTTGCCAACCATGAATATTTTGCACTGCAGCACGCTGATAGTTCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072519.7
ENSMUST00000180626.2
CDS CAA 90 bp GAGGAAAAGTGCGTTGATTACAGCAATGGTGTAAGTTTGTATTTCTaGGTCTGTCCCCTGAAGATGAGGAATGAGTTGGCCAATGGTGAT +
Preference number: 6 (lower is better)
Translates to: EEKCVDYSNGVSLYF*VCPLKMRNELANGD
Trigger: ATCACCATTGGCCAACTCATTCCTCATCTTCAGGGGACAGACCAAGAAATACAAACTTACACCATTGCTGTAATCAACGCACTTTTCCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072519.7
ENSMUST00000180626.2
CDS GCA 72 bp CTCCTGTCTCCTCTCATCAGGAGCTTTGAGGAAAAGTaGGTTGATTACAGCAATGGTGTAAGTTTGTATTTC +
Preference number: 6 (lower is better)
Translates to: LLSPLIRSFEEK*VDYSNGVSLYF
Trigger: GAAATACAAACTTACACCATTGCTGTAATCAACGCACTTTTCCTCAAAGCTCCTGATGAGAGGAGACAGGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072519.7
ENSMUST00000180626.2
CDS GCA 72 bp AACCTGTCTCCTCTCATCAGGAGCTTTGAGGAAAAGTaGGTTGATTACAGCAATGGTGTAAGTTTGTATTTC +
Preference number: 6 (lower is better)
Translates to: NLSPLIRSFEEK*VDYSNGVSLYF
Trigger: GAAATACAAACTTACACCATTGCTGTAATCAACGCACTTTTCCTCAAAGCTCCTGATGAGAGGAGACAGGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221595.3
CDS CAA 72 bp GAGGAAAAGTGCGTTGATTACAGCAATGGTGTAAGTTaGTATTTCTTGGTCTGTCCCCTGAAGATGAGGAAT +
Preference number: 6 (lower is better)
Translates to: EEKCVDYSNGVS*YFLVCPLKMRN
Trigger: ATTCCTCATCTTCAGGGGACAGACCAAGAAATACAAACTTACACCATTGCTGTAATCAACGCACTTTTCCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072519.7
ENSMUST00000180626.2
CDS CCA 72 bp CAGTACTCATGCTTATCAGGAGCAATGAAGTTCAGTTaGCAATTTGAGTCGTATAAGATGGAGAAAGCAAGT +
Preference number: 6 (lower is better)
Translates to: QYSCLSGAMKFS*QFESYKMEKAS
Trigger: ACTTGCTTTCTCCATCTTATACGACTCAAATTGCCAACTGAACTTCATTGCTCCTGATAAGCATGAGTACTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072519.7
CDS TCA 72 bp TATTTCGTTGCGATTCTTTTCTGTGATGTAGAAGTTTaGACTATCAGCGTGCTGCAGTGCAAAATATTCATG +
Preference number: 6 (lower is better)
Translates to: YFVAILFCDVEV*TISVLQCKIFM
Trigger: CATGAATATTTTGCACTGCAGCACGCTGATAGTTCAAACTTCTACATCACAGAAAAGAATCGCAACGAAATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072519.7
ENSMUST00000180626.2