Pregenerated sensors for ELK1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000009406Ensembl transcript IDs: ENSMUST00000009550.14
Found 86 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGACCTACTTGCTTCTCCTTCCCCAGTGCTGGGATTAAAGACGTGTaGCTCTACCACCTGGCTCACACAATCAGCTTCTTAAACATATAC | + |
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Preference number: 1 (lower is better) Translates to: RPTCFSFPSAGIKDV*LYHLAHTISFLNIY Trigger: GTATATGTTTAAGAAGCTGATTGTGTGAGCCAGGTGGTAGAGGCACACGTCTTTAATCCCAGCACTGGGGAAGGAGAAGCAAGTAGGTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| 3UTR CCA 90 bp | GGCAGCCACTGGGAGGCTGGCAAAGAAGAAAGAAGTTGTCTGTTTTaGGTGGAGGAGTTAGTGAAATATTCACTTTTCCAGGAATATCCA | + |
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Preference number: 1 (lower is better) Translates to: GSHWEAGKEERSCLF*VEELVKYSLFQEYP Trigger: TGGATATTCCTGGAAAAGTGAATATTTCACTAACTCCTCCACCCAAAACAGACAACTTCTTTCTTCTTTGCCAGCCTCCCAGTGGCTGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| 3UTR GCA 90 bp | GTCTCTGACATATGCCATCATTTTGCCTCTCTCACAGTCAATCTTTaGCTCGCCCTTATTGTTCTTCATATTCGTGGCTGTCATGGCTTA | + |
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Preference number: 1 (lower is better) Translates to: VSDICHHFASLTVNL*LALIVLHIRGCHGL Trigger: TAAGCCATGACAGCCACGAATATGAAGAACAATAAGGGCGAGGCAAAGATTGACTGTGAGAGAGGCAAAATGATGGCATATGTCAGAGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| 3UTR TCA 90 bp | TTCTCTCATCACACTGGTTACCAATCAGCAGTCTGTATCAGTCTCTaGCATATGCCATCATTTTGCCTCTCTCACAGTCAATCTTTGCCT | + |
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Preference number: 1 (lower is better) Translates to: FSHHTGYQSAVCISL*HMPSFCLSHSQSLP Trigger: AGGCAAAGATTGACTGTGAGAGAGGCAAAATGATGGCATATGTCAGAGACTGATACAGACTGCTGATTGGTAACCAGTGTGATGAGAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| 3UTR TCA 90 bp | TTCACACACAAACCATTTCTCAAAACCATTTCTCTACTAACAGTGTaGCTTTTCATCTACAAATGGTTGGGACTGGAGAAATGGCCCAGT | + |
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Preference number: 1 (lower is better) Translates to: FTHKPFLKTISLLTV*LFIYKWLGLEKWPS Trigger: ACTGGGCCATTTCTCCAGTCCCAACCATTTGTAGATGAAAAGTCACACTGTTAGTAGAGAAATGGTTTTGAGAAATGGTTTGTGTGTGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| 3UTR-3UTR CCA 90 bp | AGACCATGCATACACATGTACAAAAATGTTTGCGGTCACACTTCTGACCTGCGACCAGGTCTTCAGGCCTaGTCTGGGCCAGTGCTGACA | + |
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Preference number: 2 (lower is better) Translates to: RPCIHMYKNVCGHTSDLRPGLQA*SGPVLT Trigger: TGTCAGCACTGGCCCAGACCAGGCCTGAAGACCTGG...TCGCAGGTCAGAAGTGTGACCGCAAACATTTTTGTACATGTGTATGCATGGTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| 3UTR CAA 90 bp | GGGCAGCCACTGGGAGGCTGGCAAAGAAGAAAGAAGTTGTCTGTTTaGGGTGGAGGAGTTAGTGAAATATTCACTTTTCCAGGAATATCC | + |
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Preference number: 2 (lower is better) Translates to: GQPLGGWQRRKKLSV*GGGVSEIFTFPGIS Trigger: GGATATTCCTGGAAAAGTGAATATTTCACTAACTCCTCCACCCAAAACAGACAACTTCTTTCTTCTTTGCCAGCCTCCCAGTGGCTGCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| 3UTR-3UTR TCA 90 bp | ATTAAAGACGTGTGCCTCTACCACCTGGCTCACACAATCAGCTTCTTAAACATAAGTGCTGACAGGAGGTaGGCCTGGGAGTCTTTTGAT | + |
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Preference number: 2 (lower is better) Translates to: IKDVCLYHLAHTISFLNISADRR*AWESFD Trigger: ATCAAAAGACTCCCAGGCTCACCTCCTGTCAGCACT...TATGTTTAAGAAGCTGATTGTGTGAGCCAGGTGGTAGAGGCACACGTCTTTAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| 3UTR-3UTR CCA 90 bp | ACTCCCAAACCATTAAATCGTACAAGGGCTCCCTGGACTCAGATACAGCCAGGAAGAAGTTGTCTGTTTTaGGTGGAGGAGTTAGTGAAA | + |
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Preference number: 2 (lower is better) Translates to: TPKPLNRTRAPWTQIQPGRSCLF*VEELVK Trigger: TTTCACTAACTCCTCCACCCAAAACAGACAACTTCT...TCCTGGCTGTATCTGAGTCCAGGGAGCCCTTGTACGATTTAATGGTTTGGGAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| 3UTR CAA 90 bp | AATGGTTGGGACTGGAGAAATGGCCCAGTCAATAAAACACTTGCTTaGCACAACCCTGTGAATAAAGGAGTCAACGTGGTAAAAGGTGAC | + |
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Preference number: 2 (lower is better) Translates to: NGWDWRNGPVNKTLA*HNPVNKGVNVVKGD Trigger: GTCACCTTTTACCACGTTGACTCCTTTATTCACAGGGTTGTGCAAAGCAAGTGTTTTATTGACTGGGCCATTTCTCCAGTCCCAACCATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| 3UTR-3UTR TCA 90 bp | GTAAAAGGTGACCGTTTGATCCCTACAATACAGGTAAAAATTCCAGGCATAGAAAACCAGGTAGATCCTTaGGACTTGATGGCCAGCAAG | + |
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Preference number: 2 (lower is better) Translates to: VKGDRLIPTIQVKIPGIENQVDP*DLMASK Trigger: CTTGCTGGCCATCAAGTCTCAAGGATCTACCTGGTT...TTCTATGCCTGGAATTTTTACCTGTATTGTAGGGATCAAACGGTCACCTTTTAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| 3UTR-3UTR TCA 90 bp | GTAAAAGGTGACCGTTTGATCCCTACAATACAGGTAAAAATTCCAGGCATAGAAGCCTACCCACCCATCTaGTATAGGAAGAGATGTTTC | + |
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Preference number: 2 (lower is better) Translates to: VKGDRLIPTIQVKIPGIEAYPPI*YRKRCF Trigger: GAAACATCTCTTCCTATATCAGATGGGTGGGTAGGC...TTCTATGCCTGGAATTTTTACCTGTATTGTAGGGATCAAACGGTCACCTTTTAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| 3UTR CAA 90 bp | CACAACCCTGTGAATAAAGGAGTCAACGTGGTAAAAGGTGACCGTTaGATCCCTACAATACAGGTAAAAATTCCAGGCATAGAAGTACAT | + |
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Preference number: 2 (lower is better) Translates to: HNPVNKGVNVVKGDR*IPTIQVKIPGIEVH Trigger: ATGTACTTCTATGCCTGGAATTTTTACCTGTATTGTAGGGATCAAACGGTCACCTTTTACCACGTTGACTCCTTTATTCACAGGGTTGTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| 3UTR-3UTR CCA 90 bp | GTAAAAGGTGACCGTTTGATCCCTACAATACAGGTAAAAATTCCAGGCATAGAATGTTTCTCCTTGAGATaGCTAACTGGAGAGTTCAGG | + |
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Preference number: 2 (lower is better) Translates to: VKGDRLIPTIQVKIPGIECFSLR*LTGEFR Trigger: CCTGAACTCTCCAGTTAGCCATCTCAAGGAGAAACA...TTCTATGCCTGGAATTTTTACCTGTATTGTAGGGATCAAACGGTCACCTTTTAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| 3UTR-3UTR CCA 90 bp | GTAAAAGGTGACCGTTTGATCCCTACAATACAGGTAAAAATTCCAGGCATAGAAAAAATGGGGAGGAAATaGGTGAGATGTCTTACCCAC | + |
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Preference number: 2 (lower is better) Translates to: VKGDRLIPTIQVKIPGIEKMGRK*VRCLTH Trigger: GTGGGTAAGACATCTCACCCATTTCCTCCCCATTTT...TTCTATGCCTGGAATTTTTACCTGTATTGTAGGGATCAAACGGTCACCTTTTAC 41% GC, longest homopolymer 6 nt, total homopolymer stretches 19 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| 3UTR-3UTR TCA 90 bp | GTAAAAGGTGACCGTTTGATCCCTACAATACAGGTAAAAATTCCAGGCATAGAATCTCAAGCCATGCCCTaGTTGTCTTGTTTTAGGAAA | + |
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Preference number: 2 (lower is better) Translates to: VKGDRLIPTIQVKIPGIESQAMP*LSCFRK Trigger: TTTCCTAAAACAAGACAATCAGGGCATGGCTTGAGA...TTCTATGCCTGGAATTTTTACCTGTATTGTAGGGATCAAACGGTCACCTTTTAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| 3UTR-3UTR TCA 90 bp | GTAAAAGGTGACCGTTTGATCCCTACAATACAGGTAAAAATTCCAGGCATAGAAGGCCAAAAGGTTACTTaGGAAAAGAACAAGCTGACT | + |
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Preference number: 2 (lower is better) Translates to: VKGDRLIPTIQVKIPGIEGQKVT*EKNKLT Trigger: AGTCAGCTTGTTCTTTTCTCAAGTAACCTTTTGGCC...TTCTATGCCTGGAATTTTTACCTGTATTGTAGGGATCAAACGGTCACCTTTTAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| 3UTR-3UTR GCA 90 bp | ATTAAAGACGTGTGCCTCTACCACCTGGCTCACACAATCAGCTTCTTAAACATACCACACATAAGACCATaGATACACATGTACAAAAAT | + |
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Preference number: 2 (lower is better) Translates to: IKDVCLYHLAHTISFLNIPHIRP*IHMYKN Trigger: ATTTTTGTACATGTGTATGCATGGTCTTATGTGTGG...TATGTTTAAGAAGCTGATTGTGTGAGCCAGGTGGTAGAGGCACACGTCTTTAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| 3UTR TCA 72 bp | GGAACTTGCTCTGTAGACCAGGCTGACCTTGAACTCTaGGACCTACTTGCTTCTCCTTCCCCAGTGCTGGGA | + |
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Preference number: 3 (lower is better) Translates to: GTCSVDQADLEL*DLLASPSPVLG Trigger: TCCCAGCACTGGGGAAGGAGAAGCAAGTAGGTCTCAGAGTTCAAGGTCAGCCTGGTCTACAGAGCAAGTTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| 3UTR TCA 72 bp | AGCAAGTGTATCCCAACTGGTAAGTTTAGGCAAAGATaGGACCCTGTCTCAAAGGAGGGGACAGTGTTCCAG | + |
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Preference number: 3 (lower is better) Translates to: SKCIPTGKFRQR*DPVSKEGTVFQ Trigger: CTGGAACACTGTCCCCTCCTTTGAGACAGGGTCTCATCTTTGCCTAAACTTACCAGTTGGGATACACTTGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| 3UTR-3UTR CAA 90 bp | ATTAAAGACGTGTGCCTCTACCACCTGGCTCACACAATCAGCTTCTTAAACATAACTCCCCTAAAAAGGTaGGGCCAGATTCTTCCCAGT | + |
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Preference number: 3 (lower is better) Translates to: IKDVCLYHLAHTISFLNITPLKR*GQILPS Trigger: ACTGGGAAGAATCTGGCCCAACCTTTTTAGGGGAGT...TATGTTTAAGAAGCTGATTGTGTGAGCCAGGTGGTAGAGGCACACGTCTTTAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| 3UTR TCA 72 bp | CACACTGGTTACCAATCAGCAGTCTGTATCAGTCTCTaGCATATGCCATCATTTTGCCTCTCTCACAGTCAA | + |
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Preference number: 3 (lower is better) Translates to: HTGYQSAVCISL*HMPSFCLSHSQ Trigger: TTGACTGTGAGAGAGGCAAAATGATGGCATATGTCAGAGACTGATACAGACTGCTGATTGGTAACCAGTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| 3UTR-3UTR CAA 90 bp | GTAAAAGGTGACCGTTTGATCCCTACAATACAGGTAAAAATTCCAGGCATAGAAGAACCAGGTAGATCCTaGAGACTTGATGGCCAGCAA | + |
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Preference number: 3 (lower is better) Translates to: VKGDRLIPTIQVKIPGIEEPGRS*RLDGQQ Trigger: TTGCTGGCCATCAAGTCTCAAGGATCTACCTGGTTC...TTCTATGCCTGGAATTTTTACCTGTATTGTAGGGATCAAACGGTCACCTTTTAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| 3UTR GCA 72 bp | ATATGCCATCATTTTGCCTCTCTCACAGTCAATCTTTaGCTCGCCCTTATTGTTCTTCATATTCGTGGCTGT | + |
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Preference number: 3 (lower is better) Translates to: ICHHFASLTVNL*LALIVLHIRGC Trigger: ACAGCCACGAATATGAAGAACAATAAGGGCGAGGCAAAGATTGACTGTGAGAGAGGCAAAATGATGGCATAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| 3UTR GCA 72 bp | GTTACCAATCAGCAGTCTGTATCAGTCTCTGACATATaGCATCATTTTGCCTCTCTCACAGTCAATCTTTGC | + |
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Preference number: 3 (lower is better) Translates to: VTNQQSVSVSDI*HHFASLTVNLC Trigger: GCAAAGATTGACTGTGAGAGAGGCAAAATGATGGCATATGTCAGAGACTGATACAGACTGCTGATTGGTAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| 3UTR CCA 72 bp | CAATCTTTGCCTCGCCCTTATTGTTCTTCATATTCGTaGCTGTCATGGCTTATTTTGGTGACACAGGAGAAA | + |
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Preference number: 3 (lower is better) Translates to: QSLPRPYCSSYS*LSWLILVTQEK Trigger: TTTCTCCTGTGTCACCAAAATAAGCCATGACAGCCACGAATATGAAGAACAATAAGGGCGAGGCAAAGATTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| 3UTR-3UTR CAA 90 bp | GTAAAAGGTGACCGTTTGATCCCTACAATACAGGTAAAAATTCCAGGCATAGAAAAGAAGTTGTCTGTTTaGGGTGGAGGAGTTAGTGAA | + |
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Preference number: 3 (lower is better) Translates to: VKGDRLIPTIQVKIPGIEKKLSV*GGGVSE Trigger: TTCACTAACTCCTCCACCCAAAACAGACAACTTCTT...TTCTATGCCTGGAATTTTTACCTGTATTGTAGGGATCAAACGGTCACCTTTTAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| 3UTR-3UTR CAA 90 bp | GTAAAAGGTGACCGTTTGATCCCTACAATACAGGTAAAAATTCCAGGCATAGAACAAAGAAGAAAGAAGTaGTCTGTTTTGGGTGGAGGA | + |
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Preference number: 3 (lower is better) Translates to: VKGDRLIPTIQVKIPGIEQRRKK*SVLGGG Trigger: TCCTCCACCCAAAACAGACAACTTCTTTCTTCTTTG...TTCTATGCCTGGAATTTTTACCTGTATTGTAGGGATCAAACGGTCACCTTTTAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| 3UTR GCA 72 bp | CACATAAGACCATGCATACACATGTACAAAAATGTTTaGGGTCACACTTCTGACCTGCGACACACATATTTA | + |
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Preference number: 3 (lower is better) Translates to: HIRPCIHMYKNV*GHTSDLRHTYL Trigger: TAAATATGTGTGTCGCAGGTCAGAAGTGTGACCGCAAACATTTTTGTACATGTGTATGCATGGTCTTATGTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| 3UTR CCA 72 bp | CACATATTTAAAATCTTTCGGTTTCTCTCATCACACTaGTTACCAATCAGCAGTCTGTATCAGTCTCTGACA | + |
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Preference number: 3 (lower is better) Translates to: HIFKIFRFLSSH*LPISSLYQSLT Trigger: TGTCAGAGACTGATACAGACTGCTGATTGGTAACCAGTGTGATGAGAGAAACCGAAAGATTTTAAATATGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| 3UTR TCA 72 bp | AAACCATTTCTCAAAACCATTTCTCTACTAACAGTGTaGCTTTTCATCTACAAATGGTTGGGACTGGAGAAA | + |
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Preference number: 3 (lower is better) Translates to: KPFLKTISLLTV*LFIYKWLGLEK Trigger: TTTCTCCAGTCCCAACCATTTGTAGATGAAAAGTCACACTGTTAGTAGAGAAATGGTTTTGAGAAATGGTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR TCA 90 bp | GTTGATTCCCTGGCTACCACTCCCAAACCATTAAATCGTACAAGGGCTCCCTGGGGTGCTCCTGCTCCCTaGGGCGGGTGCTGGTACTCC | + |
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Preference number: 4 (lower is better) Translates to: VDSLATTPKPLNRTRAPWGAPAP*GGCWYS Trigger: GGAGTACCAGCACCCGCCTCAGGGAGCAGGAGCACC...CCAGGGAGCCCTTGTACGATTTAATGGTTTGGGAGTGGTAGCCAGGGAATCAAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR CCA 90 bp | ACTCCCAAACCATTAAATCGTACAAGGGCTCCCTGGACTCAGATACAGCCAGGATCCCCTGGGCCTGCATaGACAGTAGCAGGGGCCATG | + |
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Preference number: 4 (lower is better) Translates to: TPKPLNRTRAPWTQIQPGSPGPA*TVAGAM Trigger: CATGGCCCCTGCTACTGTCCATGCAGGCCCAGGGGA...TCCTGGCTGTATCTGAGTCCAGGGAGCCCTTGTACGATTTAATGGTTTGGGAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR CCA 90 bp | GTTGATTCCCTGGCTACCACTCCCAAACCATTAAATCGTACAAGGGCTCCCTGGAGTGGCAGTGTCCCCTaGGCCTGCATGGACAGTAGC | + |
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Preference number: 4 (lower is better) Translates to: VDSLATTPKPLNRTRAPWSGSVP*ACMDSS Trigger: GCTACTGTCCATGCAGGCCCAGGGGACACTGCCACT...CCAGGGAGCCCTTGTACGATTTAATGGTTTGGGAGTGGTAGCCAGGGAATCAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR TCA 90 bp | GTTGATTCCCTGGCTACCACTCCCAAACCATTAAATCGTACAAGGGCTCCCTGGAGTGTTGGGAAGCACTaGGGCAGGCCGAGGAGGAAT | + |
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Preference number: 4 (lower is better) Translates to: VDSLATTPKPLNRTRAPWSVGKH*GRPRRN Trigger: ATTCCTCCTCGGCCTGCCTCAGTGCTTCCCAACACT...CCAGGGAGCCCTTGTACGATTTAATGGTTTGGGAGTGGTAGCCAGGGAATCAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR GCA 90 bp | TTCTCCTTGAGATGGCTAACTGGAGAGTTCAGGAGCATAGATGGATGGACTCCAAGTGTCCCCTGGGCCTaGATGGACAGTAGCAGGGGC | + |
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Preference number: 4 (lower is better) Translates to: FSLRWLTGEFRSIDGWTPSVPWA*MDSSRG Trigger: GCCCCTGCTACTGTCCATGCAGGCCCAGGGGACACT...TGGAGTCCATCCATCTATGCTCCTGAACTCTCCAGTTAGCCATCTCAAGGAGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR CCA 90 bp | ACTCCCAAACCATTAAATCGTACAAGGGCTCCCTGGACTCAGATACAGCCAGGAAGGAATGGGTGGCTGTaGCTGTGGCTGCAGGGATTG | + |
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Preference number: 4 (lower is better) Translates to: TPKPLNRTRAPWTQIQPGRNGWL*LWLQGL Trigger: CAATCCCTGCAGCCACAGCCACAGCCACCCATTCCT...TCCTGGCTGTATCTGAGTCCAGGGAGCCCTTGTACGATTTAATGGTTTGGGAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR CCA 90 bp | ACTCCCAAACCATTAAATCGTACAAGGGCTCCCTGGACTCAGATACAGCCAGGATGTTCTCTGTTAGGATaGCTGGGAGCCGAGCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: TPKPLNRTRAPWTQIQPGCSLLG*LGAEPA Trigger: TGCTGGCTCGGCTCCCAGCCATCCTAACAGAGAACA...TCCTGGCTGTATCTGAGTCCAGGGAGCCCTTGTACGATTTAATGGTTTGGGAGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR CCA 90 bp | TTCTCCTTGAGATGGCTAACTGGAGAGTTCAGGAGCATAGATGGATGGACTCCACCTGTGCGCTGCCACTaGACGGAAACTGGAAGGAGA | + |
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Preference number: 4 (lower is better) Translates to: FSLRWLTGEFRSIDGWTPPVRCH*TETGRR Trigger: TCTCCTTCCAGTTTCCGTCCAGTGGCAGCGCACAGG...TGGAGTCCATCCATCTATGCTCCTGAACTCTCCAGTTAGCCATCTCAAGGAGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR CCA 90 bp | TCTGACATATGCCATCATTTTGCCTCTCTCACAGTCAATCTTTGCCTCGCCCTTCGTGCTAAGCCACCTTaGCCTGTCATTCCTGCACCC | + |
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Preference number: 4 (lower is better) Translates to: SDICHHFASLTVNLCLALRAKPP*PVIPAP Trigger: GGGTGCAGGAATGACAGGCCAAGGTGGCTTAGCACG...AAGGGCGAGGCAAAGATTGACTGTGAGAGAGGCAAAATGATGGCATATGTCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR CCA 90 bp | TCTGACATATGCCATCATTTTGCCTCTCTCACAGTCAATCTTTGCCTCGCCCTTGCCACCCAGCAGGCTTaGGCTAAGTGGAAGTTCCAG | + |
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Preference number: 4 (lower is better) Translates to: SDICHHFASLTVNLCLALATQQA*AKWKFQ Trigger: CTGGAACTTCCACTTAGCCCAAGCCTGCTGGGTGGC...AAGGGCGAGGCAAAGATTGACTGTGAGAGAGGCAAAATGATGGCATATGTCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR GCA 90 bp | AGACCATGCATACACATGTACAAAAATGTTTGCGGTCACACTTCTGACCTGCGAGGGTGCTGGTACTCCTaGAGGGGTAGTGTTGGGAAG | + |
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Preference number: 4 (lower is better) Translates to: RPCIHMYKNVCGHTSDLRGCWYS*RGSVGK Trigger: CTTCCCAACACTACCCCTGCAGGAGTACCAGCACCC...TCGCAGGTCAGAAGTGTGACCGCAAACATTTTTGTACATGTGTATGCATGGTCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR GCA 90 bp | TCTGACATATGCCATCATTTTGCCTCTCTCACAGTCAATCTTTGCCTCGCCCTTGGCTGGACTACGGGGTaGAATTGGACTCAGAGTGCT | + |
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Preference number: 4 (lower is better) Translates to: SDICHHFASLTVNLCLALGWTTG*NWTQSA Trigger: AGCACTCTGAGTCCAATTGCACCCCGTAGTCCAGCC...AAGGGCGAGGCAAAGATTGACTGTGAGAGAGGCAAAATGATGGCATATGTCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR CCA 90 bp | AGTTTAACTATGTTTCTCCTTGAGATGGCTAACTGGAGAGTTCAGGAGCATAGACCGAGGAGGAATGGGTaGCTGTGGCTGTGGCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: SLTMFLLEMANWRVQEHRPRRNG*LWLWLQ Trigger: CTGCAGCCACAGCCACAGCCACCCATTCCTCCTCGG...TCTATGCTCCTGAACTCTCCAGTTAGCCATCTCAAGGAGAAACATAGTTAAACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR CCA 90 bp | AGTTTAACTATGTTTCTCCTTGAGATGGCTAACTGGAGAGTTCAGGAGCATAGACAGGCCGAGGAGGAATaGGTGGCTGTGGCTGTGGCT | + |
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Preference number: 4 (lower is better) Translates to: SLTMFLLEMANWRVQEHRQAEEE*VAVAVA Trigger: AGCCACAGCCACAGCCACCCATTCCTCCTCGGCCTG...TCTATGCTCCTGAACTCTCCAGTTAGCCATCTCAAGGAGAAACATAGTTAAACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR CCA 90 bp | AGACCATGCATACACATGTACAAAAATGTTTGCGGTCACACTTCTGACCTGCGACTAAGGGGTTTGGACTaGTGCTCCTGCTCCCTGAGG | + |
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Preference number: 4 (lower is better) Translates to: RPCIHMYKNVCGHTSDLRLRGLD*CSCSLR Trigger: CCTCAGGGAGCAGGAGCACCAGTCCAAACCCCTTAG...TCGCAGGTCAGAAGTGTGACCGCAAACATTTTTGTACATGTGTATGCATGGTCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR GCA 90 bp | GTAAAAGGTGACCGTTTGATCCCTACAATACAGGTAAAAATTCCAGGCATAGAATTGGACTGGTGCTCCTaGTCCCTGAGGCGGGTGCTG | + |
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Preference number: 4 (lower is better) Translates to: VKGDRLIPTIQVKIPGIELDWCS*SLRRVL Trigger: CAGCACCCGCCTCAGGGAGCAGGAGCACCAGTCCAA...TTCTATGCCTGGAATTTTTACCTGTATTGTAGGGATCAAACGGTCACCTTTTAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR CCA 90 bp | ATTAAAGACGTGTGCCTCTACCACCTGGCTCACACAATCAGCTTCTTAAACATAACAGACACCTCAGGCTaGGGTGGGCAGTCTTCAGTG | + |
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Preference number: 4 (lower is better) Translates to: IKDVCLYHLAHTISFLNITDTSG*GGQSSV Trigger: CACTGAAGACTGCCCACCCCAGCCTGAGGTGTCTGT...TATGTTTAAGAAGCTGATTGTGTGAGCCAGGTGGTAGAGGCACACGTCTTTAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR CCA 90 bp | AGACCATGCATACACATGTACAAAAATGTTTGCGGTCACACTTCTGACCTGCGAAGAGTGCTCCAGAAATaGATGCTAGGGGGCAGCGAG | + |
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Preference number: 4 (lower is better) Translates to: RPCIHMYKNVCGHTSDLRRVLQK*MLGGSE Trigger: CTCGCTGCCCCCTAGCATCCATTTCTGGAGCACTCT...TCGCAGGTCAGAAGTGTGACCGCAAACATTTTTGTACATGTGTATGCATGGTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR CCA 90 bp | AGACCATGCATACACATGTACAAAAATGTTTGCGGTCACACTTCTGACCTGCGAGAAGGAGAGCTTGGCTaGACTACGGGGTGCAATTGG | + |
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Preference number: 4 (lower is better) Translates to: RPCIHMYKNVCGHTSDLREGELG*TTGCNW Trigger: CCAATTGCACCCCGTAGTCCAGCCAAGCTCTCCTTC...TCGCAGGTCAGAAGTGTGACCGCAAACATTTTTGTACATGTGTATGCATGGTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR GCA 90 bp | AGTTTAACTATGTTTCTCCTTGAGATGGCTAACTGGAGAGTTCAGGAGCATAGAGGGGTTAGGATAACCTaGAGGGGCAGACCAGCCTCT | + |
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Preference number: 4 (lower is better) Translates to: SLTMFLLEMANWRVQEHRGVRIT*RGRPAS Trigger: AGAGGCTGGTCTGCCCCTGCAGGTTATCCTAACCCC...TCTATGCTCCTGAACTCTCCAGTTAGCCATCTCAAGGAGAAACATAGTTAAACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR GCA 90 bp | AGTTTAACTATGTTTCTCCTTGAGATGGCTAACTGGAGAGTTCAGGAGCATAGAGGCTTTCGGCCCTTCTaGGGTTGGGTGATCTCAGTG | + |
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Preference number: 4 (lower is better) Translates to: SLTMFLLEMANWRVQEHRGFRPF*GWVISV Trigger: CACTGAGATCACCCAACCGCAGAAGGGCCGAAAGCC...TCTATGCTCCTGAACTCTCCAGTTAGCCATCTCAAGGAGAAACATAGTTAAACT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR TCA 90 bp | ACTCCCAAACCATTAAATCGTACAAGGGCTCCCTGGACTCAGATACAGCCAGGACGCTCACCTTGCGGATaGTATTCTTATCATAGTAGT | + |
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Preference number: 4 (lower is better) Translates to: TPKPLNRTRAPWTQIQPGRSPCG*YSYHSS Trigger: ACTACTATGATAAGAATATCATCCGCAAGGTGAGCG...TCCTGGCTGTATCTGAGTCCAGGGAGCCCTTGTACGATTTAATGGTTTGGGAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR GCA 90 bp | AGTTTAACTATGTTTCTCCTTGAGATGGCTAACTGGAGAGTTCAGGAGCATAGATGTTGGTCTTGTTCTTaGGCAGTCCCCATAGCCGGG | + |
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Preference number: 4 (lower is better) Translates to: SLTMFLLEMANWRVQEHRCWSCS*AVPIAG Trigger: CCCGGCTATGGGGACTGCGCAAGAACAAGACCAACA...TCTATGCTCCTGAACTCTCCAGTTAGCCATCTCAAGGAGAAACATAGTTAAACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR CCA 90 bp | GTAAAAGGTGACCGTTTGATCCCTACAATACAGGTAAAAATTCCAGGCATAGAATCTCAGTGGTGGAAGTaGAGAGGCCACACACCTGGG | + |
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Preference number: 4 (lower is better) Translates to: VKGDRLIPTIQVKIPGIESQWWK*RGHTPG Trigger: CCCAGGTGTGTGGCCTCTCCACTTCCACCACTGAGA...TTCTATGCCTGGAATTTTTACCTGTATTGTAGGGATCAAACGGTCACCTTTTAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR CCA 90 bp | AGTTTAACTATGTTTCTCCTTGAGATGGCTAACTGGAGAGTTCAGGAGCATAGAGGGTCAAGGTATGTGTaGGGAGCAGGGATGGCGTTA | + |
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Preference number: 4 (lower is better) Translates to: SLTMFLLEMANWRVQEHRGSRYV*GAGMAL Trigger: TAACGCCATCCCTGCTCCCCACACATACCTTGACCC...TCTATGCTCCTGAACTCTCCAGTTAGCCATCTCAAGGAGAAACATAGTTAAACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR TCA 90 bp | ATTAAAGACGTGTGCCTCTACCACCTGGCTCACACAATCAGCTTCTTAAACATAGTGAGGTCCAGGAGATaGTGTGGCCATTACCTTGTT | + |
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Preference number: 4 (lower is better) Translates to: IKDVCLYHLAHTISFLNIVRSRR*CGHYLV Trigger: AACAAGGTAATGGCCACATCATCTCCTGGACCTCAC...TATGTTTAAGAAGCTGATTGTGTGAGCCAGGTGGTAGAGGCACACGTCTTTAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR TCA 90 bp | AGTTTAACTATGTTTCTCCTTGAGATGGCTAACTGGAGAGTTCAGGAGCATAGAAGCTTTGACAGCTTCTaGACTGAAGCCTCCAGCCCT | + |
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Preference number: 4 (lower is better) Translates to: SLTMFLLEMANWRVQEHRSFDSF*TEASSP Trigger: AGGGCTGGAGGCTTCAGTTCAGAAGCTGTCAAAGCT...TCTATGCTCCTGAACTCTCCAGTTAGCCATCTCAAGGAGAAACATAGTTAAACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR CCA 90 bp | ATTAAAGACGTGTGCCTCTACCACCTGGCTCACACAATCAGCTTCTTAAACATAACTACGGGGTGCAATTaGACTCAGAGTGCTCCAGAA | + |
|
Preference number: 4 (lower is better) Translates to: IKDVCLYHLAHTISFLNITTGCN*TQSAPE Trigger: TTCTGGAGCACTCTGAGTCCAATTGCACCCCGTAGT...TATGTTTAAGAAGCTGATTGTGTGAGCCAGGTGGTAGAGGCACACGTCTTTAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR CCA 90 bp | GTAAAAGGTGACCGTTTGATCCCTACAATACAGGTAAAAATTCCAGGCATAGAAACTGGAAGGAGAGCTTaGCTGGACTACGGGGTGCAA | + |
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Preference number: 4 (lower is better) Translates to: VKGDRLIPTIQVKIPGIETGRRA*LDYGVQ Trigger: TTGCACCCCGTAGTCCAGCCAAGCTCTCCTTCCAGT...TTCTATGCCTGGAATTTTTACCTGTATTGTAGGGATCAAACGGTCACCTTTTAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| 3UTR CAA 72 bp | CATATGCCATCATTTTGCCTCTCTCACAGTCAATCTTaGCCTCGCCCTTATTGTTCTTCATATTCGTGGCTG | + |
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Preference number: 4 (lower is better) Translates to: HMPSFCLSHSQS*PRPYCSSYSWL Trigger: CAGCCACGAATATGAAGAACAATAAGGGCGAGGCAAAGATTGACTGTGAGAGAGGCAAAATGATGGCATATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| 3UTR CAA 72 bp | GACTGGAGAAATGGCCCAGTCAATAAAACACTTGCTTaGCACAACCCTGTGAATAAAGGAGTCAACGTGGTA | + |
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Preference number: 4 (lower is better) Translates to: DWRNGPVNKTLA*HNPVNKGVNVV Trigger: TACCACGTTGACTCCTTTATTCACAGGGTTGTGCAAAGCAAGTGTTTTATTGACTGGGCCATTTCTCCAGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR GCA 90 bp | GTAAAAGGTGACCGTTTGATCCCTACAATACAGGTAAAAATTCCAGGCATAGAAGAAGCCTCCAGCCCTTaGAGCTTCCAATTCTTCCTT | + |
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Preference number: 4 (lower is better) Translates to: VKGDRLIPTIQVKIPGIEEASSP*SFQFFL Trigger: AAGGAAGAATTGGAAGCTGCAAGGGCTGGAGGCTTC...TTCTATGCCTGGAATTTTTACCTGTATTGTAGGGATCAAACGGTCACCTTTTAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| 3UTR CAA 72 bp | CTGGGAGGCTGGCAAAGAAGAAAGAAGTTGTCTGTTTaGGGTGGAGGAGTTAGTGAAATATTCACTTTTCCA | + |
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Preference number: 4 (lower is better) Translates to: LGGWQRRKKLSV*GGGVSEIFTFP Trigger: TGGAAAAGTGAATATTTCACTAACTCCTCCACCCAAAACAGACAACTTCTTTCTTCTTTGCCAGCCTCCCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| 3UTR CAA 72 bp | TTGCCTCTCTCACAGTCAATCTTTGCCTCGCCCTTATaGTTCTTCATATTCGTGGCTGTCATGGCTTATTTT | + |
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Preference number: 4 (lower is better) Translates to: LPLSQSIFASPL*FFIFVAVMAYF Trigger: AAAATAAGCCATGACAGCCACGAATATGAAGAACAATAAGGGCGAGGCAAAGATTGACTGTGAGAGAGGCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| 3UTR CAA 72 bp | GTGAATAAAGGAGTCAACGTGGTAAAAGGTGACCGTTaGATCCCTACAATACAGGTAAAAATTCCAGGCATA | + |
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Preference number: 4 (lower is better) Translates to: VNKGVNVVKGDR*IPTIQVKIPGI Trigger: TATGCCTGGAATTTTTACCTGTATTGTAGGGATCAAACGGTCACCTTTTACCACGTTGACTCCTTTATTCAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS CCA 90 bp | GACCAGCCTCTTCTGCTTCCAAACAGGCTTCTAAGGGGTTTGGACTaGTGCTCCTGCTCCCTGAGGCGGGTGCTGGTACTCCTGCAGGGG | + |
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Preference number: 5 (lower is better) Translates to: DQPLLLPNRLLRGLD*CSCSLRRVLVLLQG Trigger: CCCCTGCAGGAGTACCAGCACCCGCCTCAGGGAGCAGGAGCACCAGTCCAAACCCCTTAGAAGCCTGTTTGGAAGCAGAAGAGGCTGGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS GCA 90 bp | CTTGGGCTAAGTGGAAGTTCCAGGTCCCGAGGCTTTCGGCCCTTCTaGGGTTGGGTGATCTCAGTGGTGGAAGTGGAGAGGCCACACACC | + |
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Preference number: 5 (lower is better) Translates to: LGLSGSSRSRGFRPF*GWVISVVEVERPHT Trigger: GGTGTGTGGCCTCTCCACTTCCACCACTGAGATCACCCAACCGCAGAAGGGCCGAAAGCCTCGGGACCTGGAACTTCCACTTAGCCCAAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS CCA 90 bp | TGGAAGTGGAGAGGCCACACACCTGGGCTGTGTTCTCTGTTAGGATaGCTGGGAGCCGAGCCAGCAGGCCTTCTGAGGCTGAGACTTCTG | + |
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Preference number: 5 (lower is better) Translates to: WKWRGHTPGLCSLLG*LGAEPAGLLRLRLL Trigger: CAGAAGTCTCAGCCTCAGAAGGCCTGCTGGCTCGGCTCCCAGCCATCCTAACAGAGAACACAGCCCAGGTGTGTGGCCTCTCCACTTCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR CAA 90 bp | TTCTCCTTGAGATGGCTAACTGGAGAGTTCAGGAGCATAGATGGATGGACTCCACCTGCAGGGGTAGTGTaGGGAAGCACTGAGGCAGGC | + |
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Preference number: 5 (lower is better) Translates to: FSLRWLTGEFRSIDGWTPPAGVV*GSTEAG Trigger: GCCTGCCTCAGTGCTTCCCAACACTACCCCTGCAGG...TGGAGTCCATCCATCTATGCTCCTGAACTCTCCAGTTAGCCATCTCAAGGAGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR CAA 90 bp | GTTGATTCCCTGGCTACCACTCCCAAACCATTAAATCGTACAAGGGCTCCCTGGAGGCTTCTAAGGGGTTaGGACTGGTGCTCCTGCTCC | + |
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Preference number: 5 (lower is better) Translates to: VDSLATTPKPLNRTRAPWRLLRG*DWCSCS Trigger: GGAGCAGGAGCACCAGTCCAAACCCCTTAGAAGCCT...CCAGGGAGCCCTTGTACGATTTAATGGTTTGGGAGTGGTAGCCAGGGAATCAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR CAA 90 bp | TCTGACATATGCCATCATTTTGCCTCTCTCACAGTCAATCTTTGCCTCGCCCTTAACTGGAAGGAGAGCTaGGCTGGACTACGGGGTGCA | + |
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Preference number: 5 (lower is better) Translates to: SDICHHFASLTVNLCLALNWKES*AGLRGA Trigger: TGCACCCCGTAGTCCAGCCAAGCTCTCCTTCCAGTT...AAGGGCGAGGCAAAGATTGACTGTGAGAGAGGCAAAATGATGGCATATGTCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR CAA 90 bp | TCTGACATATGCCATCATTTTGCCTCTCTCACAGTCAATCTTTGCCTCGCCCTTCCTGAAGACCAGAGCTaGTTCCTGATCCTGGAGTCC | + |
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Preference number: 5 (lower is better) Translates to: SDICHHFASLTVNLCLALPEDQS*FLILES Trigger: GGACTCCAGGATCAGGAACAAGCTCTGGTCTTCAGG...AAGGGCGAGGCAAAGATTGACTGTGAGAGAGGCAAAATGATGGCATATGTCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR CAA 90 bp | TTCTCCTTGAGATGGCTAACTGGAGAGTTCAGGAGCATAGATGGATGGACTCCAGATGTGGCCATTACCTaGTTCTCTCAGAAGCTGCAG | + |
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Preference number: 5 (lower is better) Translates to: FSLRWLTGEFRSIDGWTPDVAIT*FSQKLQ Trigger: CTGCAGCTTCTGAGAGAACAAGGTAATGGCCACATC...TGGAGTCCATCCATCTATGCTCCTGAACTCTCCAGTTAGCCATCTCAAGGAGAA 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR CAA 90 bp | AGTTTAACTATGTTTCTCCTTGAGATGGCTAACTGGAGAGTTCAGGAGCATAGATTAGGCCCCTCCACTTaGACTTCTGGGGGCTGTGGA | + |
|
Preference number: 5 (lower is better) Translates to: SLTMFLLEMANWRVQEHRLGPST*TSGGCG Trigger: TCCACAGCCCCCAGAAGTCAAAGTGGAGGGGCCTAA...TCTATGCTCCTGAACTCTCCAGTTAGCCATCTCAAGGAGAAACATAGTTAAACT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR CAA 90 bp | AGTTTAACTATGTTTCTCCTTGAGATGGCTAACTGGAGAGTTCAGGAGCATAGAATGTTGGTCTTGTTCTaGCGCAGTCCCCATAGCCGG | + |
|
Preference number: 5 (lower is better) Translates to: SLTMFLLEMANWRVQEHRMLVLF*RSPHSR Trigger: CCGGCTATGGGGACTGCGCAAGAACAAGACCAACAT...TCTATGCTCCTGAACTCTCCAGTTAGCCATCTCAAGGAGAAACATAGTTAAACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR CAA 90 bp | AGACCATGCATACACATGTACAAAAATGTTTGCGGTCACACTTCTGACCTGCGAGTGGATGGCCAAAACTaGGGTCCAGACTCAACTCTT | + |
|
Preference number: 5 (lower is better) Translates to: RPCIHMYKNVCGHTSDLRVDGQN*GPDSTL Trigger: AAGAGTTGAGTCTGGACCCAAGTTTTGGCCATCCAC...TCGCAGGTCAGAAGTGTGACCGCAAACATTTTTGTACATGTGTATGCATGGTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS-3UTR CAA 90 bp | AGTTTAACTATGTTTCTCCTTGAGATGGCTAACTGGAGAGTTCAGGAGCATAGAACTTCTGGTTCAGCTTaGACAGCTTCTGAACTGAAG | + |
|
Preference number: 5 (lower is better) Translates to: SLTMFLLEMANWRVQEHRTSGSA*TASELK Trigger: CTTCAGTTCAGAAGCTGTCAAAGCTGAACCAGAAGT...TCTATGCTCCTGAACTCTCCAGTTAGCCATCTCAAGGAGAAACATAGTTAAACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS TCA 72 bp | CGCTGGCCCCGGTGCCTGAAGACCAGAGCTTGTTCCTaGTCCTGGAGTCCGTTCAGGTCCCTGGCCACCCAG | + |
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Preference number: 6 (lower is better) Translates to: RWPRCLKTRACS*SWSPFRSLATQ Trigger: CTGGGTGGCCAGGGACCTGAACGGACTCCAGGATCAGGAACAAGCTCTGGTCTTCAGGCACCGGGGCCAGCG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS CAA 72 bp | CCTGAGGCGGGTGCTGGTACTCCTGCAGGGGTAGTGTaGGGAAGCACTGAGGCAGGCCGAGGAGGAATGGGT | + |
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Preference number: 6 (lower is better) Translates to: PEAGAGTPAGVV*GSTEAGRGGMG Trigger: ACCCATTCCTCCTCGGCCTGCCTCAGTGCTTCCCAACACTACCCCTGCAGGAGTACCAGCACCCGCCTCAGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS CAA 72 bp | GCGTTAGCGCTGGCCCCGGTGCCTGAAGACCAGAGCTaGTTCCTGATCCTGGAGTCCGTTCAGGTCCCTGGC | + |
|
Preference number: 6 (lower is better) Translates to: ALALAPVPEDQS*FLILESVQVPG Trigger: GCCAGGGACCTGAACGGACTCCAGGATCAGGAACAAGCTCTGGTCTTCAGGCACCGGGGCCAGCGCTAACGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS GCA 72 bp | CCAAACAGGCTTCTAAGGGGTTTGGACTGGTGCTCCTaGTCCCTGAGGCGGGTGCTGGTACTCCTGCAGGGG | + |
|
Preference number: 6 (lower is better) Translates to: PNRLLRGLDWCS*SLRRVLVLLQG Trigger: CCCCTGCAGGAGTACCAGCACCCGCCTCAGGGAGCAGGAGCACCAGTCCAAACCCCTTAGAAGCCTGTTTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS CCA 72 bp | TGGAGTCCGTTCAGGTCCCTGGCCACCCAGCAGGCTTaGGCTAAGTGGAAGTTCCAGGTCCCGAGGCTTTCG | + |
|
Preference number: 6 (lower is better) Translates to: WSPFRSLATQQA*AKWKFQVPRLS Trigger: CGAAAGCCTCGGGACCTGGAACTTCCACTTAGCCCAAGCCTGCTGGGTGGCCAGGGACCTGAACGGACTCCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS CAA 90 bp | GGGGCAGACCAGCCTCTTCTGCTTCCAAACAGGCTTCTAAGGGGTTaGGACTGGTGCTCCTGCTCCCTGAGGCGGGTGCTGGTACTCCTG | + |
|
Preference number: 6 (lower is better) Translates to: GADQPLLLPNRLLRG*DWCSCSLRRVLVLL Trigger: CAGGAGTACCAGCACCCGCCTCAGGGAGCAGGAGCACCAGTCCAAACCCCTTAGAAGCCTGTTTGGAAGCAGAAGAGGCTGGTCTGCCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS GCA 72 bp | AGTGGAAGTTCCAGGTCCCGAGGCTTTCGGCCCTTCTaGGGTTGGGTGATCTCAGTGGTGGAAGTGGAGAGG | + |
|
Preference number: 6 (lower is better) Translates to: SGSSRSRGFRPF*GWVISVVEVER Trigger: CCTCTCCACTTCCACCACTGAGATCACCCAACCGCAGAAGGGCCGAAAGCCTCGGGACCTGGAACTTCCACT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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| CDS CCA 72 bp | CACTTTGACTTCTGGGGGCTGTGGATGGCCAAAACTTaGGTCCAGACTCAACTCTTCGGATTTCTGGTTTGG | + |
|
Preference number: 6 (lower is better) Translates to: HFDFWGLWMAKT*VQTQLFGFLVW Trigger: CCAAACCAGAAATCCGAAGAGTTGAGTCTGGACCCAAGTTTTGGCCATCCACAGCCCCCAGAAGTCAAAGTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009550.14 |
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