RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ELFN2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000043460

Ensembl transcript IDs: ENSMUST00000088592.6, ENSMUST00000229441.2

Found 349 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGCTGGCCGGGTGCCTCTTTGGAGGGCCCCAGCTTCGTTTCCAGATaGAAACAGCCCGGTGTGGATCCTTCCACAGCCCCTCCCACAGGA +
Preference number: 1 (lower is better)
Translates to: GWPGASLEGPSFVSR*KQPGVDPSTAPPTG
Trigger: TCCTGTGGGAGGGGCTGTGGAAGGATCCACACCGGGCTGTTTCCATCTGGAAACGAAGCTGGGGCCCTCCAAAGAGGCACCCGGCCAGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR GCA 90 bp GGCAACGGACTAGCTAGGGAAGGGGAGGGGCCAGGAACCTGGCCCTaGACCCTGACCAGGGCAGTAGGAGGCACCTCACTGTTTGTGCTT +
Preference number: 1 (lower is better)
Translates to: GNGLAREGEGPGTWP*TLTRAVGGTSLFVL
Trigger: AAGCACAAACAGTGAGGTGCCTCCTACTGCCCTGGTCAGGGTGCAGGGCCAGGTTCCTGGCCCCTCCCCTTCCCTAGCTAGTCCGTTGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR CCA 90 bp TGCCATGGCAACGGACTAGCTAGGGAAGGGGAGGGGCCAGGAACCTaGCCCTGCACCCTGACCAGGGCAGTAGGAGGCACCTCACTGTTT +
Preference number: 1 (lower is better)
Translates to: CHGNGLAREGEGPGT*PCTLTRAVGGTSLF
Trigger: AAACAGTGAGGTGCCTCCTACTGCCCTGGTCAGGGTGCAGGGCCAGGTTCCTGGCCCCTCCCCTTCCCTAGCTAGTCCGTTGCCATGGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR CCA 90 bp CCAATGCCCAGAAAGATGGGAGGAGGGTCTGGGGCAGGGCTAGGTTaGCGGCACCTGTTTTGGTCTTCTGCAGAGCTGGCCCTCCCTGGG +
Preference number: 1 (lower is better)
Translates to: PMPRKMGGGSGAGLG*RHLFWSSAELALPG
Trigger: CCCAGGGAGGGCCAGCTCTGCAGAAGACCAAAACAGGTGCCGCCAACCTAGCCCTGCCCCAGACCCTCCTCCCATCTTTCTGGGCATTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR GCA 90 bp GTTGGTCAGTTAGTCGCTCTGGGCACCAACTGCCAGGCTCTGGGTTaGCATGGCAACGGACTAGCTAGGGAAGGGGAGGGGCCAGGAACC +
Preference number: 1 (lower is better)
Translates to: VGQLVALGTNCQALG*HGNGLAREGEGPGT
Trigger: GGTTCCTGGCCCCTCCCCTTCCCTAGCTAGTCCGTTGCCATGGCAACCCAGAGCCTGGCAGTTGGTGCCCAGAGCGACTAACTGACCAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR GCA 90 bp GGGCACACAGGCAGGGGGCAGAACTGCCCAGTACAGCTGTCCCAATaGCCCACAGGCCCACTGCCCACTCAAAGGCAAAGGACAATGCCT +
Preference number: 1 (lower is better)
Translates to: GHTGRGQNCPVQLSQ*PTGPLPTQRQRTMP
Trigger: AGGCATTGTCCTTTGCCTTTGAGTGGGCAGTGGGCCTGTGGGGCATTGGGACAGCTGTACTGGGCAGTTCTGCCCCCTGCCTGTGTGCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR TCA 90 bp CTGGGCATGACACTCCCCTCCTGCAGGGCCCCACGCCTCTCTCCATaGAGCTCCAAGCTCCTAGCCTCCTGTACTCAGTGTGACAGTCCT +
Preference number: 1 (lower is better)
Translates to: LGMTLPSCRAPRLSP*SSKLLASCTQCDSP
Trigger: AGGACTGTCACACTGAGTACAGGAGGCTAGGAGCTTGGAGCTTCATGGAGAGAGGCGTGGGGCCCTGCAGGAGGGGAGTGTCATGCCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR CCA 90 bp CCATGGAAATATGGGAGTCCCTCTAAGCCAGGGGATAAGACAGGGTaGGGTGGGGCAGATGCCCTCCTGGGCAGGCCGAGATGCTGCACA +
Preference number: 1 (lower is better)
Translates to: PWKYGSPSKPGDKTG*GGADALLGRPRCCT
Trigger: TGTGCAGCATCTCGGCCTGCCCAGGAGGGCATCTGCCCCACCCCACCCTGTCTTATCCCCTGGCTTAGAGGGACTCCCATATTTCCATGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR CCA 90 bp TTGCCATGTCTGCAGAGCTCTGGTGCGGAGAGACAAGAGACCACCTaGTCCCCTACGCCCATCACAGCAAGGAAGCCCCCATCTGCCTCC +
Preference number: 1 (lower is better)
Translates to: LPCLQSSGAERQETT*SPTPITARKPPSAS
Trigger: GGAGGCAGATGGGGGCTTCCTTGCTGTGATGGGCGTAGGGGACCAGGTGGTCTCTTGTCTCTCCGCACCAGAGCTCTGCAGACATGGCAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR CCA 90 bp GGGAGGGGATGTGGGAAGCAGGGAGAAGAGGTGGTCATCATTGTCTaGACCTCCACCCCAGCCCTGTGCTTGACTGGCAGAAGAGGAGGG +
Preference number: 1 (lower is better)
Translates to: GRGCGKQGEEVVIIV*TSTPALCLTGRRGG
Trigger: CCCTCCTCTTCTGCCAGTCAAGCACAGGGCTGGGGTGGAGGTCCAGACAATGATGACCACCTCTTCTCCCTGCTTCCCACATCCCCTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR TCA 90 bp CCAAGAATGATGGCCAAACAAGTAGGGACAGAGCCCACTCCACTGTaGGGAGTCTCCCTGGGCATGACACTCCCCTCCTGCAGGGCCCCA +
Preference number: 1 (lower is better)
Translates to: PRMMAKQVGTEPTPL*GVSLGMTLPSCRAP
Trigger: TGGGGCCCTGCAGGAGGGGAGTGTCATGCCCAGGGAGACTCCTCACAGTGGAGTGGGCTCTGTCCCTACTTGTTTGGCCATCATTCTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR GCA 90 bp CCGAGATGCTGCACACAGCAGGAGCCAGACAAGTGGGGTGCAGGGTaGAGGGAGAGATCCCCACATTCTACATCATCTCCACACTGGCCC +
Preference number: 1 (lower is better)
Translates to: PRCCTQQEPDKWGAG*RERSPHSTSSPHWP
Trigger: GGGCCAGTGTGGAGATGATGTAGAATGTGGGGATCTCTCCCTGCACCCTGCACCCCACTTGTCTGGCTCCTGCTGTGTGCAGCATCTCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR GCA 90 bp GGGCAGGCCGAGATGCTGCACACAGCAGGAGCCAGACAAGTGGGGTaGAGGGTGCAGGGAGAGATCCCCACATTCTACATCATCTCCACA +
Preference number: 1 (lower is better)
Translates to: GQAEMLHTAGARQVG*RVQGEIPTFYIIST
Trigger: TGTGGAGATGATGTAGAATGTGGGGATCTCTCCCTGCACCCTGCACCCCACTTGTCTGGCTCCTGCTGTGTGCAGCATCTCGGCCTGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR GCA 90 bp AGGGTCTGGGGCAGGGCTAGGTTGGCGGCACCTGTTTTGGTCTTCTaGAGAGCTGGCCCTCCCTGGGTTTCAAGAGCTGCTTGGATCACA +
Preference number: 1 (lower is better)
Translates to: RVWGRARLAAPVLVF*RAGPPWVSRAAWIT
Trigger: TGTGATCCAAGCAGCTCTTGAAACCCAGGGAGGGCCAGCTCTGCAGAAGACCAAAACAGGTGCCGCCAACCTAGCCCTGCCCCAGACCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR CCA 90 bp CTCCTGGGCAGGCCGAGATGCTGCACACAGCAGGAGCCAGACAAGTaGGGTGCAGGGTGCAGGGAGAGATCCCCACATTCTACATCATCT +
Preference number: 1 (lower is better)
Translates to: LLGRPRCCTQQEPDK*GAGCRERSPHSTSS
Trigger: AGATGATGTAGAATGTGGGGATCTCTCCCTGCACCCTGCACCCCACTTGTCTGGCTCCTGCTGTGTGCAGCATCTCGGCCTGCCCAGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR GCA 90 bp CCCAATGCCCCACAGGCCCACTGCCCACTCAAAGGCAAAGGACAATaGCTTAGCCTAGTCTCGGGACTCCAGAGCTTGTCCCCAGAAGCT +
Preference number: 1 (lower is better)
Translates to: PNAPQAHCPLKGKGQ*LSLVSGLQSLSPEA
Trigger: AGCTTCTGGGGACAAGCTCTGGAGTCCCGAGACTAGGCTAAGGCATTGTCCTTTGCCTTTGAGTGGGCAGTGGGCCTGTGGGGCATTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR GCA 90 bp GGCAGAACTGCCCAGTACAGCTGTCCCAATGCCCCACAGGCCCACTaGCCACTCAAAGGCAAAGGACAATGCCTTAGCCTAGTCTCGGGA +
Preference number: 1 (lower is better)
Translates to: GRTAQYSCPNAPQAH*PLKGKGQCLSLVSG
Trigger: TCCCGAGACTAGGCTAAGGCATTGTCCTTTGCCTTTGAGTGGGCAGTGGGCCTGTGGGGCATTGGGACAGCTGTACTGGGCAGTTCTGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR CCA 90 bp GGTGTTGGTTACTTCACAGTCAGGTGGTGGTCAAGTGTGTGTGTGTaGGTGCGTGTGTGCGTGTGTGCGTGTGCGTCCACTCCTAGGCCC +
Preference number: 1 (lower is better)
Translates to: GVGYFTVRWWSSVCV*VRVCVCACASTPRP
Trigger: GGGCCTAGGAGTGGACGCACACGCACACACGCACACACGCACCCACACACACACACTTGACCACCACCTGACTGTGAAGTAACCAACACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR CCA 90 bp AGGTTGGCGGCACCTGTTTTGGTCTTCTGCAGAGCTGGCCCTCCCTaGGTTTCAAGAGCTGCTTGGATCACATGGAGGGAATGGGGGTGG +
Preference number: 1 (lower is better)
Translates to: RLAAPVLVFCRAGPP*VSRAAWITWREWGW
Trigger: CCACCCCCATTCCCTCCATGTGATCCAAGCAGCTCTTGAAACCCAGGGAGGGCCAGCTCTGCAGAAGACCAAAACAGGTGCCGCCAACCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR CCA 90 bp GCAAACACTTGTGGGCCCAATGCCCAGAAAGATGGGAGGAGGGTCTaGGGCAGGGCTAGGTTGGCGGCACCTGTTTTGGTCTTCTGCAGA +
Preference number: 1 (lower is better)
Translates to: ANTCGPNAQKDGRRV*GRARLAAPVLVFCR
Trigger: TCTGCAGAAGACCAAAACAGGTGCCGCCAACCTAGCCCTGCCCCAGACCCTCCTCCCATCTTTCTGGGCATTGGGCCCACAAGTGTTTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR CCA 90 bp GCAGGGTGCAGGGAGAGATCCCCACATTCTACATCATCTCCACACTaGCCCCAGGCCTTGTCATTCACTGTTGCCTCTCTGTGGTGGGTA +
Preference number: 1 (lower is better)
Translates to: AGCRERSPHSTSSPH*PQALSFTVASLWWV
Trigger: TACCCACCACAGAGAGGCAACAGTGAATGACAAGGCCTGGGGCCAGTGTGGAGATGATGTAGAATGTGGGGATCTCTCCCTGCACCCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR GCA 90 bp AAGTGGGCTTTCCCTGCCTACCTCCCTAGACAGGCCCTTCAGCCCTaGATCGGTTTGTTTCAGAGCTTCCTGCTCTGTAGGAAGGAGTTG +
Preference number: 1 (lower is better)
Translates to: KWAFPAYLPRQALQP*IGLFQSFLLCRKEL
Trigger: CAACTCCTTCCTACAGAGCAGGAAGCTCTGAAACAAACCGATGCAGGGCTGAAGGGCCTGTCTAGGGAGGTAGGCAGGGAAAGCCCACTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR GCA 90 bp CTACTTGGAAGACACTTGAAGGGGGCTGGTGGCACCCTTTGCCTCTaGTTCTGTCTGGTTAGCAGGACATTGCTTACTCTTGGCCTCCCA +
Preference number: 1 (lower is better)
Translates to: LLGRHLKGAGGTLCL*FCLVSRTLLTLGLP
Trigger: TGGGAGGCCAAGAGTAAGCAATGTCCTGCTAACCAGACAGAAGCAGAGGCAAAGGGTGCCACCAGCCCCCTTCAAGTGTCTTCCAAGTAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR GCA 90 bp ATAGCCCTAGCTTTCCTGGTCAGAGCCCTCACCGGTCAAGTGAGATaGCTCTCGCCCACCATCCTCCTCACTCAAGAGTCACAAATCTCT +
Preference number: 1 (lower is better)
Translates to: IALAFLVRALTGQVR*LSPTILLTQESQIS
Trigger: AGAGATTTGTGACTCTTGAGTGAGGAGGATGGTGGGCGAGAGGCATCTCACTTGACCGGTGAGGGCTCTGACCAGGAAAGCTAGGGCTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR GCA 90 bp ATTTTCACAGTGGTAGTTCTTCTTGCCATGTCTGCAGAGCTCTGGTaGGGAGAGACAAGAGACCACCTGGTCCCCTACGCCCATCACAGC +
Preference number: 1 (lower is better)
Translates to: IFTVVVLLAMSAELW*GETRDHLVPYAHHS
Trigger: GCTGTGATGGGCGTAGGGGACCAGGTGGTCTCTTGTCTCTCCGCACCAGAGCTCTGCAGACATGGCAAGAAGAACTACCACTGTGAAAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR CCA 90 bp CTCATTTTCACAGTGGTAGTTCTTCTTGCCATGTCTGCAGAGCTCTaGTGCGGAGAGACAAGAGACCACCTGGTCCCCTACGCCCATCAC +
Preference number: 1 (lower is better)
Translates to: LIFTVVVLLAMSAEL*CGETRDHLVPYAHH
Trigger: GTGATGGGCGTAGGGGACCAGGTGGTCTCTTGTCTCTCCGCACCAGAGCTCTGCAGACATGGCAAGAAGAACTACCACTGTGAAAATGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR TCA 90 bp CCTGCATCGGTTTGTTTCAGAGCTTCCTGCTCTGTAGGAAGGAGTTaGAGGGCCATTGGTGACAGGGGACCTTTCCACAGACTCGAGAAC +
Preference number: 1 (lower is better)
Translates to: PASVCFRASCSVGRS*RAIGDRGPFHRLEN
Trigger: GTTCTCGAGTCTGTGGAAAGGTCCCCTGTCACCAATGGCCCTTCAACTCCTTCCTACAGAGCAGGAAGCTCTGAAACAAACCGATGCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR GCA 90 bp TCCTTCCTAGCTCATTTTCACAGTGGTAGTTCTTCTTGCCATGTCTaGAGAGCTCTGGTGCGGAGAGACAAGAGACCACCTGGTCCCCTA +
Preference number: 1 (lower is better)
Translates to: SFLAHFHSGSSSCHV*RALVRRDKRPPGPL
Trigger: TAGGGGACCAGGTGGTCTCTTGTCTCTCCGCACCAGAGCTCTGCAGACATGGCAAGAAGAACTACCACTGTGAAAATGAGCTAGGAAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR GCA 90 bp CCACACCTCTCCTTCCTAGCTCATTTTCACAGTGGTAGTTCTTCTTaGCATGTCTGCAGAGCTCTGGTGCGGAGAGACAAGAGACCACCT +
Preference number: 1 (lower is better)
Translates to: PHLSFLAHFHSGSSS*HVCRALVRRDKRPP
Trigger: AGGTGGTCTCTTGTCTCTCCGCACCAGAGCTCTGCAGACATGGCAAGAAGAACTACCACTGTGAAAATGAGCTAGGAAGGAGAGGTGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR CCA 90 bp TTTTCCTGTCCGCTATTATTGGGTGTTGGTTACTTCACAGTCAGGTaGTGGTCAAGTGTGTGTGTGTGGGTGCGTGTGTGCGTGTGTGCG +
Preference number: 1 (lower is better)
Translates to: FSCPLLLGVGYFTVR*WSSVCVWVRVCVCA
Trigger: CGCACACACGCACACACGCACCCACACACACACACTTGACCACCACCTGACTGTGAAGTAACCAACACCCAATAATAGCGGACAGGAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR CCA 90 bp AATGTCCACATGTTGCCACGTCTCCAAGGGAAATGTTCCCAAGCTTaGAGGATAGCCTCTCTGAACAAGAGGCCTGTGGTTGACCTCTAC +
Preference number: 1 (lower is better)
Translates to: NVHMLPRLQGKCSQA*RIASLNKRPVVDLY
Trigger: GTAGAGGTCAACCACAGGCCTCTTGTTCAGAGAGGCTATCCTCCAAGCTTGGGAACATTTCCCTTGGAGACGTGGCAACATGTGGACATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR CCA 90 bp ACCTATGTCTTAGATCATTGCTCTGTCTCAAAGGTCCCTGTGGCCTaGTCCCCATTGTTGAAATGGACCCTCTCTTTAAAGTTCCCCCTG +
Preference number: 1 (lower is better)
Translates to: TYVLDHCSVSKVPVA*SPLLKWTLSLKFPL
Trigger: CAGGGGGAACTTTAAAGAGAGGGTCCATTTCAACAATGGGGACCAGGCCACAGGGACCTTTGAGACAGAGCAATGATCTAAGACATAGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR CCA 90 bp CTGTCCCACGACTCAGCCCAGAACTCAATGTCAGGGGGTTTCACTTaGCTCCAGGGTATAAGAATCCATTTGGCATTTTGTGACAATTGT +
Preference number: 1 (lower is better)
Translates to: LSHDSAQNSMSGGFT*LQGIRIHLAFCDNC
Trigger: ACAATTGTCACAAAATGCCAAATGGATTCTTATACCCTGGAGCCAAGTGAAACCCCCTGACATTGAGTTCTGGGCTGAGTCGTGGGACAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR CCA 90 bp ACTTTAAGGAAAATGTTTGTTTTCCTGTCCGCTATTATTGGGTGTTaGTTACTTCACAGTCAGGTGGTGGTCAAGTGTGTGTGTGTGGGT +
Preference number: 1 (lower is better)
Translates to: TLRKMFVFLSAIIGC*LLHSQVVVKCVCVG
Trigger: ACCCACACACACACACTTGACCACCACCTGACTGTGAAGTAACCAACACCCAATAATAGCGGACAGGAAAACAAACATTTTCCTTAAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR CCA 90 bp GTTGTAAACTTTAAGGAAAATGTTTGTTTTCCTGTCCGCTATTATTaGGTGTTGGTTACTTCACAGTCAGGTGGTGGTCAAGTGTGTGTG +
Preference number: 1 (lower is better)
Translates to: VVNFKENVCFPVRYY*VLVTSQSGGGQVCV
Trigger: CACACACACTTGACCACCACCTGACTGTGAAGTAACCAACACCCAATAATAGCGGACAGGAAAACAAACATTTTCCTTAAAGTTTACAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR CCA 90 bp GGGGCAGAACTGCCCAGTACAGCTGTCCCAATGCCCCACAGGCCCACTGCCCACTCCCGGCCACCCTGTTaGGGGGCCCTTCCCCCAAGT +
Preference number: 2 (lower is better)
Translates to: GAELPSTAVPMPHRPTAHSRPPC*GALPPS
Trigger: ACTTGGGGGAAGGGCCCCCCAACAGGGTGGCCGGGA...GTGGGCAGTGGGCCTGTGGGGCATTGGGACAGCTGTACTGGGCAGTTCTGCCCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR CCA 90 bp GAGATACCAGTGGGGAGCAGGTCTACCCACCACCCCACACCCAGGCAGCTCCCCAGGCGGGGCCAGCACTaGGCCAGGAAGCTGGGAGAC +
Preference number: 2 (lower is better)
Translates to: EIPVGSRSTHHPTPRQLPRRGQH*ARKLGD
Trigger: GTCTCCCAGCTTCCTGGCCCAGTGCTGGCCCCGCCT...GGGGAGCTGCCTGGGTGTGGGGTGGTGGGTAGACCTGCTCCCCACTGGTATCTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR GCA 90 bp TGGGAAGCTAAGGGGCACACAGGCAGGGGGCAGAACTGCCCAGTACAGCTGTCCGTGGGGTGGGGCAGATaGCCTCCTGGGCAGGCCGAG +
Preference number: 2 (lower is better)
Translates to: WEAKGHTGRGQNCPVQLSVGWGR*PPGQAE
Trigger: CTCGGCCTGCCCAGGAGGGCATCTGCCCCACCCCAC...GGACAGCTGTACTGGGCAGTTCTGCCCCCTGCCTGTGTGCCCCTTAGCTTCCCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR CCA 90 bp CTCCTGGGCAGGCCGAGATGCTGCACACAGCAGGAGCCAGACAAGTGGGGTGCATCCCGGCCACCCTGTTaGGGGGCCCTTCCCCCAAGT +
Preference number: 2 (lower is better)
Translates to: LLGRPRCCTQQEPDKWGASRPPC*GALPPS
Trigger: ACTTGGGGGAAGGGCCCCCCAACAGGGTGGCCGGGA...TGCACCCCACTTGTCTGGCTCCTGCTGTGTGCAGCATCTCGGCCTGCCCAGGAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR CCA 90 bp CTGGCCCTGCACCCTGACCAGGGCAGTAGGAGGCACCTCACTGTTTGTGCTTTGAGGCGGGGCCAGCACTaGGCCAGGAAGCTGGGAGAC +
Preference number: 2 (lower is better)
Translates to: LALHPDQGSRRHLTVCALRRGQH*ARKLGD
Trigger: GTCTCCCAGCTTCCTGGCCCAGTGCTGGCCCCGCCT...CAAAGCACAAACAGTGAGGTGCCTCCTACTGCCCTGGTCAGGGTGCAGGGCCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR CCA 90 bp AAGGCTCCTCCCTATCTCAATGGGAAGCTAAGGGGCACACAGGCAGGGGGCAGAGCCCAGAGGAGCAGCTaGAGGCGGGGCCAGCACTGG +
Preference number: 2 (lower is better)
Translates to: KAPPYLNGKLRGTQAGGRAQRSS*RRGQHW
Trigger: CCAGTGCTGGCCCCGCCTCCAGCTGCTCCTCTGGGC...TCTGCCCCCTGCCTGTGTGCCCCTTAGCTTCCCATTGAGATAGGGAGGAGCCTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR CCA 90 bp AAGGGGCACACAGGCAGGGGGCAGAACTGCCCAGTACAGCTGTCCCAATGCCCCCAGGAGCCAGACAAGTaGGGTGCAGGGTGCAGGGAG +
Preference number: 2 (lower is better)
Translates to: KGHTGRGQNCPVQLSQCPQEPDK*GAGCRE
Trigger: CTCCCTGCACCCTGCACCCCACTTGTCTGGCTCCTG...GGGGCATTGGGACAGCTGTACTGGGCAGTTCTGCCCCCTGCCTGTGTGCCCCTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR TCA 90 bp GAGATACCAGTGGGGAGCAGGTCTACCCACCACCCCACACCCAGGCAGCTCCCCTACTTGGAAGACACTTaGAGGGGGCTGGTGGCACCC +
Preference number: 2 (lower is better)
Translates to: EIPVGSRSTHHPTPRQLPYLEDT*RGLVAP
Trigger: GGGTGCCACCAGCCCCCTTCAAGTGTCTTCCAAGTA...GGGGAGCTGCCTGGGTGTGGGGTGGTGGGTAGACCTGCTCCCCACTGGTATCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR CCA 90 bp GGGGCAGAACTGCCCAGTACAGCTGTCCCAATGCCCCACAGGCCCACTGCCCACGTCCCCAGAAGCTCTTaGCTCTCGAGAGAGCTGCCA +
Preference number: 2 (lower is better)
Translates to: GAELPSTAVPMPHRPTAHVPRSS*LSRELP
Trigger: TGGCAGCTCTCTCGAGAGCCAAGAGCTTCTGGGGAC...GTGGGCAGTGGGCCTGTGGGGCATTGGGACAGCTGTACTGGGCAGTTCTGCCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR GCA 90 bp TGCTTGCTCACGCCCCTAGCCTCTCGGCCTGCCTGCTATTCTCAGGGTGGTCAGGCTCTGGGCACCAACTaGCAGGCTCTGGGTTGCCAT +
Preference number: 2 (lower is better)
Translates to: CLLTPLASRPACYSQGGQALGTN*QALGCH
Trigger: ATGGCAACCCAGAGCCTGGCAGTTGGTGCCCAGAGC...CTGACCACCCTGAGAATAGCAGGCAGGCCGAGAGGCTAGGGGCGTGAGCAAGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR-3UTR GCA 90 bp CAGAACTGCCCAGTACAGCTGTCCCAATGCCCCACAGGCCCACTGCCCACTCAAGGCTCTCGAGAGAGCTaGCACCTGGCCAGGCTTCCT +
Preference number: 2 (lower is better)
Translates to: QNCPVQLSQCPTGPLPTQGSRES*HLARLP
Trigger: AGGAAGCCTGGCCAGGTGGCAGCTCTCTCGAGAGCC...TTGAGTGGGCAGTGGGCCTGTGGGGCATTGGGACAGCTGTACTGGGCAGTTCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR CCA 90 bp GGCCATGGGCCAGCCCCAGATGTCAGCACCATCAATAGCTGCCTCCCTCCGTGCCTCCCCAGGGCTACTTaGAAGACACTTGAAGGGGGC +
Preference number: 2 (lower is better)
Translates to: GHGPAPDVSTINSCLPPCLPRAT*KTLEGG
Trigger: GCCCCCTTCAAGTGTCTTCCAAGTAGCCCTGGGGAG...GCACGGAGGGAGGCAGCTATTGATGGTGCTGACATCTGGGGCTGGCCCATGGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR-3UTR CCA 90 bp GTGGGGTGGGGCAGATGCCCTCCTGGGCAGGCCGAGATGCTGCACACAGCAGGAACATCATCTCCACACTaGCCCCAGGCCTTGTCATTC +
Preference number: 2 (lower is better)
Translates to: VGWGRCPPGQAEMLHTAGTSSPH*PQALSF
Trigger: GAATGACAAGGCCTGGGGCCAGTGTGGAGATGATGT...TCCTGCTGTGTGCAGCATCTCGGCCTGCCCAGGAGGGCATCTGCCCCACCCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR CCA 90 bp CAGAACTGCCCAGTACAGCTGTCCCAATGCCCCACAGGCCCACTGCCCACTCAAGGGGATAAGACAGGGTaGGGTGGGGCAGATGCCCTC +
Preference number: 2 (lower is better)
Translates to: QNCPVQLSQCPTGPLPTQGDKTG*GGADAL
Trigger: GAGGGCATCTGCCCCACCCCACCCTGTCTTATCCCC...TTGAGTGGGCAGTGGGCCTGTGGGGCATTGGGACAGCTGTACTGGGCAGTTCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR GCA 90 bp AAGGCTCCTCCCTATCTCAATGGGAAGCTAAGGGGCACACAGGCAGGGGGCAGACCAGGAACCTGGCCCTaGACCCTGACCAGGGCAGTA +
Preference number: 2 (lower is better)
Translates to: KAPPYLNGKLRGTQAGGRPGTWP*TLTRAV
Trigger: TACTGCCCTGGTCAGGGTGCAGGGCCAGGTTCCTGG...TCTGCCCCCTGCCTGTGTGCCCCTTAGCTTCCCATTGAGATAGGGAGGAGCCTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR CCA 90 bp TGGGAAGCTAAGGGGCACACAGGCAGGGGGCAGAACTGCCCAGTACAGCTGTCCCTAGGGGCTGTGGCATaGGGGCCTACACCTGAGATA +
Preference number: 2 (lower is better)
Translates to: WEAKGHTGRGQNCPVQLSLGAVA*GPTPEI
Trigger: TATCTCAGGTGTAGGCCCCCATGCCACAGCCCCTAG...GGACAGCTGTACTGGGCAGTTCTGCCCCCTGCCTGTGTGCCCCTTAGCTTCCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR CCA 90 bp GGCCATGGGCCAGCCCCAGATGTCAGCACCATCAATAGCTGCCTCCCTCCGTGCGTGGGGAGGGGAGTCTaGACAAACTGGCACATACAC +
Preference number: 2 (lower is better)
Translates to: GHGPAPDVSTINSCLPPCVGRGV*TNWHIH
Trigger: GTGTATGTGCCAGTTTGTCCAGACTCCCCTCCCCAC...GCACGGAGGGAGGCAGCTATTGATGGTGCTGACATCTGGGGCTGGCCCATGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR CAA 90 bp GGGCCAGCACTGGGCCAGGAAGCTGGGAGACAGAGCTGTAACCTGTaGGGTGAGAGACCCCTAGGGCTTCTTTTCCTCTCTCTGGGCCAT +
Preference number: 2 (lower is better)
Translates to: GPALGQEAGRQSCNL*GERPLGLLFLSLGH
Trigger: ATGGCCCAGAGAGAGGAAAAGAAGCCCTAGGGGTCTCTCACCCAACAGGTTACAGCTCTGTCTCCCAGCTTCCTGGCCCAGTGCTGGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR TCA 90 bp TGGGAAGCTAAGGGGCACACAGGCAGGGGGCAGAACTGCCCAGTACAGCTGTCCTGCTGCCACCCACACTaGGAGAACTCAGTGAGAGAG +
Preference number: 2 (lower is better)
Translates to: WEAKGHTGRGQNCPVQLSCCHPH*ENSVRE
Trigger: CTCTCTCACTGAGTTCTCTCAGTGTGGGTGGCAGCA...GGACAGCTGTACTGGGCAGTTCTGCCCCCTGCCTGTGTGCCCCTTAGCTTCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR GCA 90 bp GTGGGGTGGGGCAGATGCCCTCCTGGGCAGGCCGAGATGCTGCACACAGCAGGATACCCAAATCTCTTTTaGCACCAAAACCCGCCTGAG +
Preference number: 2 (lower is better)
Translates to: VGWGRCPPGQAEMLHTAGYPNLF*HQNPPE
Trigger: CTCAGGCGGGTTTTGGTGGCAAAAGAGATTTGGGTA...TCCTGCTGTGTGCAGCATCTCGGCCTGCCCAGGAGGGCATCTGCCCCACCCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR GCA 90 bp TGTCCCAATGCCCCACAGGCCCACTGCCCACTCAAAGGCAAAGGACAATGCCTTCTGGGCAGGCCGAGATaGTGCACACAGCAGGAGCCA +
Preference number: 2 (lower is better)
Translates to: CPNAPQAHCPLKGKGQCLLGRPR*CTQQEP
Trigger: TGGCTCCTGCTGTGTGCAGCATCTCGGCCTGCCCAG...AAGGCATTGTCCTTTGCCTTTGAGTGGGCAGTGGGCCTGTGGGGCATTGGGACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR GCA 90 bp GCCCTCCTGGGCAGGCCGAGATGCTGCACACAGCAGGAGCCAGACAAGTGGGGTCCAATGTCCACATGTTaGCACGTCTCCAAGGGAAAT +
Preference number: 2 (lower is better)
Translates to: ALLGRPRCCTQQEPDKWGPMSTC*HVSKGN
Trigger: ATTTCCCTTGGAGACGTGGCAACATGTGGACATTGG...ACCCCACTTGTCTGGCTCCTGCTGTGTGCAGCATCTCGGCCTGCCCAGGAGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR GCA 90 bp GGGGCAGAACTGCCCAGTACAGCTGTCCCAATGCCCCACAGGCCCACTGCCCACAAAGGCAAAGGACAATaGCTTAGCCTAGTCTCGGGA +
Preference number: 2 (lower is better)
Translates to: GAELPSTAVPMPHRPTAHKGKGQ*LSLVSG
Trigger: TCCCGAGACTAGGCTAAGGCATTGTCCTTTGCCTTT...GTGGGCAGTGGGCCTGTGGGGCATTGGGACAGCTGTACTGGGCAGTTCTGCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR CCA 90 bp AAGTCACCTTCAACCAAGAATGATGGCCAAACAAGTAGGGACAGAGCCCACTCCGCCCAGAGGAGCAGCTaGAGGCGGGGCCAGCACTGG +
Preference number: 2 (lower is better)
Translates to: KSPSTKNDGQTSRDRAHSAQRSS*RRGQHW
Trigger: CCAGTGCTGGCCCCGCCTCCAGCTGCTCCTCTGGGC...GGAGTGGGCTCTGTCCCTACTTGTTTGGCCATCATTCTTGGTTGAAGGTGACTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR-3UTR CCA 90 bp CTGGCCCTGCACCCTGACCAGGGCAGTAGGAGGCACCTCACTGTTTGTGCTTTGGACATTGCTTACTCTTaGCCTCCCAGGGCTAGGGAC +
Preference number: 2 (lower is better)
Translates to: LALHPDQGSRRHLTVCALDIAYS*PPRARD
Trigger: GTCCCTAGCCCTGGGAGGCCAAGAGTAAGCAATGTC...CAAAGCACAAACAGTGAGGTGCCTCCTACTGCCCTGGTCAGGGTGCAGGGCCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR CAA 90 bp AAAGGCAAAGGACAATGCCTTAGCCTAGTCTCGGGACTCCAGAGCTaGTCCCCAGAAGCTCTTGGCTCTCGAGAGAGCTGCCACCTGGCC +
Preference number: 2 (lower is better)
Translates to: KGKGQCLSLVSGLQS*SPEALGSRESCHLA
Trigger: GGCCAGGTGGCAGCTCTCTCGAGAGCCAAGAGCTTCTGGGGACAAGCTCTGGAGTCCCGAGACTAGGCTAAGGCATTGTCCTTTGCCTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR GCA 90 bp CAGAACTGCCCAGTACAGCTGTCCCAATGCCCCACAGGCCCACTGCCCACTCAAAGTGGGAGGAGAGGATaGCCAATGTCCACATGTTGC +
Preference number: 2 (lower is better)
Translates to: QNCPVQLSQCPTGPLPTQSGRRG*PMSTCC
Trigger: GCAACATGTGGACATTGGGCATCCTCTCCTCCCACT...TTGAGTGGGCAGTGGGCCTGTGGGGCATTGGGACAGCTGTACTGGGCAGTTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR GCA 90 bp AAGGGGCACACAGGCAGGGGGCAGAACTGCCCAGTACAGCTGTCCCAATGCCCCGCACCTCACTGTTTGTaGTTTGATTGGTGTTGGGAG +
Preference number: 2 (lower is better)
Translates to: KGHTGRGQNCPVQLSQCPAPHCL*FDWCWE
Trigger: CTCCCAACACCAATCAAAGCACAAACAGTGAGGTGC...GGGGCATTGGGACAGCTGTACTGGGCAGTTCTGCCCCCTGCCTGTGTGCCCCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR CCA 90 bp GGCCATGGGCCAGCCCCAGATGTCAGCACCATCAATAGCTGCCTCCCTCCGTGCGCCTCTGCTTCTGTCTaGTTAGCAGGACATTGCTTA +
Preference number: 2 (lower is better)
Translates to: GHGPAPDVSTINSCLPPCASASV*LAGHCL
Trigger: TAAGCAATGTCCTGCTAACCAGACAGAAGCAGAGGC...GCACGGAGGGAGGCAGCTATTGATGGTGCTGACATCTGGGGCTGGCCCATGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR-3UTR CCA 90 bp GAAGGCCACACGCTCCCACAAACGGGACCTCACAGGCTGTTCTCTAACAGGTCACACCTGAGATACCAGTaGGGAGCAGGTCTACCCACC +
Preference number: 2 (lower is better)
Translates to: EGHTLPQTGPHRLFSNRSHLRYQ*GAGLPT
Trigger: GGTGGGTAGACCTGCTCCCCACTGGTATCTCAGGTG...TGACCTGTTAGAGAACAGCCTGTGAGGTCCCGTTTGTGGGAGCGTGTGGCCTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR-3UTR TCA 90 bp TGCTTGCTCACGCCCCTAGCCTCTCGGCCTGCCTGCTATTCTCAGGGTGGTCAGAAAGAGCAGCAGGAATaGAGGAGTCTCAGGAAGTTG +
Preference number: 2 (lower is better)
Translates to: CLLTPLASRPACYSQGGQKEQQE*RSLRKL
Trigger: CAACTTCCTGAGACTCCTTCATTCCTGCTGCTCTTT...CTGACCACCCTGAGAATAGCAGGCAGGCCGAGAGGCTAGGGGCGTGAGCAAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR-3UTR GCA 90 bp TGGGAAGCTAAGGGGCACACAGGCAGGGGGCAGAACTGCCCAGTACAGCTGTCCTTTCTAAAGAGCACCTaGCTGCTTCAGTCCCTAGAC +
Preference number: 2 (lower is better)
Translates to: WEAKGHTGRGQNCPVQLSFLKST*LLQSLD
Trigger: GTCTAGGGACTGAAGCAGGCAGGTGCTCTTTAGAAA...GGACAGCTGTACTGGGCAGTTCTGCCCCCTGCCTGTGTGCCCCTTAGCTTCCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR CAA 90 bp TTCCCTGCCTACCTCCCTAGACAGGCCCTTCAGCCCTGCATCGGTTaGTTTCAGAGCTTCCTGCTCTGTAGGAAGGAGTTGAAGGGCCAT +
Preference number: 2 (lower is better)
Translates to: FPAYLPRQALQPCIG*FQSFLLCRKELKGH
Trigger: ATGGCCCTTCAACTCCTTCCTACAGAGCAGGAAGCTCTGAAACAAACCGATGCAGGGCTGAAGGGCCTGTCTAGGGAGGTAGGCAGGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR-3UTR GCA 90 bp CTGGCCCTGCACCCTGACCAGGGCAGTAGGAGGCACCTCACTGTTTGTGCTTTGCCAATGTCCACATGTTaGCACGTCTCCAAGGGAAAT +
Preference number: 2 (lower is better)
Translates to: LALHPDQGSRRHLTVCALPMSTC*HVSKGN
Trigger: ATTTCCCTTGGAGACGTGGCAACATGTGGACATTGG...CAAAGCACAAACAGTGAGGTGCCTCCTACTGCCCTGGTCAGGGTGCAGGGCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR GCA 90 bp GCCTCTCGCCCACCATCCTCCTCACTCAAGAGTCACAAATCTCTTATCTCATGTGGCTCTCGAGAGAGCTaGCACCTGGCCAGGCTTCCT +
Preference number: 2 (lower is better)
Translates to: ASRPPSSSLKSHKSLISCGSRES*HLARLP
Trigger: AGGAAGCCTGGCCAGGTGGCAGCTCTCTCGAGAGCC...ACATGAGATAAGAGATTTGTGACTCTTGAGTGAGGAGGATGGTGGGCGAGAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR GCA 90 bp CTGGGGGACCTGCCCAATGGAGGTACCTATGTCTTAGATCATTGCTCTGTCTCAGCCTCTCGGCCTGCCTaGTATTCTCAGGGTGGTCAG +
Preference number: 2 (lower is better)
Translates to: LGDLPNGGTYVLDHCSVSASRPA*YSQGGQ
Trigger: CTGACCACCCTGAGAATAGCAGGCAGGCCGAGAGGC...TGAGACAGAGCAATGATCTAAGACATAGGTACCTCCATTGGGCAGGTCCCCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR-3UTR CCA 90 bp CCCCATACCCTACCCCCAAGGATAGCCCTAGCTTTCCTGGTCAGAGCCCTCACCTACTTCACAGTCAGGTaGTGGTCAAGTGTGTGTGTG +
Preference number: 2 (lower is better)
Translates to: PHTLPPRIALAFLVRALTYFTVR*WSSVCV
Trigger: CACACACACACTTGACCACCACCTGACTGTGAAGTA...GGTGAGGGCTCTGACCAGGAAAGCTAGGGCTATCCTTGGGGGTAGGGTATGGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR CCA 90 bp GAGACCACAACTTTGGAAGGAGTAGCAGATGAATGGGGGCGGAGCCCAGAGGAGTTCTTTTCCTCTCTCTaGGCCATCCGTAGTGGGAGG +
Preference number: 2 (lower is better)
Translates to: ETTTLEGVADEWGRSPEEFFSSL*AIRSGR
Trigger: CCTCCCACTACGGATGGCCCAGAGAGAGGAAAAGAA...CTCCTCTGGGCTCCGCCCCCATTCATCTGCTACTCCTTCCAAAGTTGTGGTCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR TCA 90 bp ATCCCCACATTCTACATCATCTCCACACTGGCCCCAGGCCTTGTCATTCACTGTTACTTGGAAGACACTTaGAGGGGGCTGGTGGCACCC +
Preference number: 2 (lower is better)
Translates to: IPTFYIISTLAPGLVIHCYLEDT*RGLVAP
Trigger: GGGTGCCACCAGCCCCCTTCAAGTGTCTTCCAAGTA...ACAGTGAATGACAAGGCCTGGGGCCAGTGTGGAGATGATGTAGAATGTGGGGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR GCA 90 bp CCCCACATTCTACATCATCTCCACACTGGCCCCAGGCCTTGTCATTCACTGTTGGGCACCCTTTGCCTCTaGTTCTGTCTGGTTAGCAGG +
Preference number: 2 (lower is better)
Translates to: PHILHHLHTGPRPCHSLLGTLCL*FCLVSR
Trigger: CCTGCTAACCAGACAGAAGCAGAGGCAAAGGGTGCC...CAACAGTGAATGACAAGGCCTGGGGCCAGTGTGGAGATGATGTAGAATGTGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR GCA 90 bp AAGGCTCCTCCCTATCTCAATGGGAAGCTAAGGGGCACACAGGCAGGGGGCAGAAAAGGCAAAGGACAATaGCTTAGCCTAGTCTCGGGA +
Preference number: 2 (lower is better)
Translates to: KAPPYLNGKLRGTQAGGRKGKGQ*LSLVSG
Trigger: TCCCGAGACTAGGCTAAGGCATTGTCCTTTGCCTTT...TCTGCCCCCTGCCTGTGTGCCCCTTAGCTTCCCATTGAGATAGGGAGGAGCCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR CCA 90 bp GGCCATGGGCCAGCCCCAGATGTCAGCACCATCAATAGCTGCCTCCCTCCGTGCTCCCCATTGTTGAAATaGACCCTCTCTTTAAAGTTC +
Preference number: 2 (lower is better)
Translates to: GHGPAPDVSTINSCLPPCSPLLK*TLSLKF
Trigger: GAACTTTAAAGAGAGGGTCCATTTCAACAATGGGGA...GCACGGAGGGAGGCAGCTATTGATGGTGCTGACATCTGGGGCTGGCCCATGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR-3UTR GCA 90 bp GCCTCTCGCCCACCATCCTCCTCACTCAAGAGTCACAAATCTCTTATCTCATGTAAGTGGGGTGCAGGGTaGAGGGAGAGATCCCCACAT +
Preference number: 2 (lower is better)
Translates to: ASRPPSSSLKSHKSLISCKWGAG*RERSPH
Trigger: ATGTGGGGATCTCTCCCTGCACCCTGCACCCCACTT...ACATGAGATAAGAGATTTGTGACTCTTGAGTGAGGAGGATGGTGGGCGAGAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR CCA 90 bp GAGACCACAACTTTGGAAGGAGTAGCAGATGAATGGGGGCGGAGCCCAGAGGAGTACTTCACAGTCAGGTaGTGGTCAAGTGTGTGTGTG +
Preference number: 2 (lower is better)
Translates to: ETTTLEGVADEWGRSPEEYFTVR*WSSVCV
Trigger: CACACACACACTTGACCACCACCTGACTGTGAAGTA...CTCCTCTGGGCTCCGCCCCCATTCATCTGCTACTCCTTCCAAAGTTGTGGTCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR CCA 90 bp AAGGCTCCTCCCTATCTCAATGGGAAGCTAAGGGGCACACAGGCAGGGGGCAGAAAATGTTCCCAAGCTTaGAGGATAGCCTCTCTGAAC +
Preference number: 2 (lower is better)
Translates to: KAPPYLNGKLRGTQAGGRKCSQA*RIASLN
Trigger: GTTCAGAGAGGCTATCCTCCAAGCTTGGGAACATTT...TCTGCCCCCTGCCTGTGTGCCCCTTAGCTTCCCATTGAGATAGGGAGGAGCCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR GCA 90 bp AATGTCAGGGGGTTTCACTTGGCTCCAGGGTATAAGAATCCATTTGGCATTTTGGCCCCACAGGCCCACTaGCCACTCAAAGGCAAAGGA +
Preference number: 2 (lower is better)
Translates to: NVRGFHLAPGYKNPFGILAPQAH*PLKGKG
Trigger: TCCTTTGCCTTTGAGTGGGCAGTGGGCCTGTGGGGC...CAAAATGCCAAATGGATTCTTATACCCTGGAGCCAAGTGAAACCCCCTGACATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR-3UTR CCA 90 bp AATGTCAGGGGGTTTCACTTGGCTCCAGGGTATAAGAATCCATTTGGCATTTTGGGAAACAGCCCGGTGTaGATCCTTCCACAGCCCCTC +
Preference number: 2 (lower is better)
Translates to: NVRGFHLAPGYKNPFGILGNSPV*ILPQPL
Trigger: GAGGGGCTGTGGAAGGATCCACACCGGGCTGTTTCC...CAAAATGCCAAATGGATTCTTATACCCTGGAGCCAAGTGAAACCCCCTGACATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR-3UTR GCA 90 bp GCCTCTCGCCCACCATCCTCCTCACTCAAGAGTCACAAATCTCTTATCTCATGTCTTGTCATTCACTGTTaGCTCTCTGTGGTGGGTAGG +
Preference number: 2 (lower is better)
Translates to: ASRPPSSSLKSHKSLISCLVIHC*LSVVGR
Trigger: CCTACCCACCACAGAGAGGCAACAGTGAATGACAAG...ACATGAGATAAGAGATTTGTGACTCTTGAGTGAGGAGGATGGTGGGCGAGAGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR CCA 90 bp AAGTCACCTTCAACCAAGAATGATGGCCAAACAAGTAGGGACAGAGCCCACTCCGGAGTCTGGACAAACTaGCACATACACGACAGATGT +
Preference number: 2 (lower is better)
Translates to: KSPSTKNDGQTSRDRAHSGVWTN*HIHDRC
Trigger: ACATCTGTCGTGTATGTGCCAGTTTGTCCAGACTCC...GGAGTGGGCTCTGTCCCTACTTGTTTGGCCATCATTCTTGGTTGAAGGTGACTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR-3UTR CCA 90 bp AATGTCAGGGGGTTTCACTTGGCTCCAGGGTATAAGAATCCATTTGGCATTTTGTTCTTTTCCTCTCTCTaGGCCATCCGTAGTGGGAGG +
Preference number: 2 (lower is better)
Translates to: NVRGFHLAPGYKNPFGILFFSSL*AIRSGR
Trigger: CCTCCCACTACGGATGGCCCAGAGAGAGGAAAAGAA...CAAAATGCCAAATGGATTCTTATACCCTGGAGCCAAGTGAAACCCCCTGACATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR-3UTR CCA 90 bp ACTTGGCTCCAGGGTATAAGAATCCATTTGGCATTTTGTGACAATTGTACTTCTACTGTTGCCTCTCTGTaGTGGGTAGGAGTCCCGGAG +
Preference number: 2 (lower is better)
Translates to: TWLQGIRIHLAFCDNCTSTVASL*WVGVPE
Trigger: CTCCGGGACTCCTACCCACCACAGAGAGGCAACAGT...AGAAGTACAATTGTCACAAAATGCCAAATGGATTCTTATACCCTGGAGCCAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR CAA 90 bp AACTTTAAGGAAAATGTTTGTTTTCCTGTCCGCTATTATTGGGTGTaGGTTACTTCACAGTCAGGTGGTGGTCAAGTGTGTGTGTGTGGG +
Preference number: 2 (lower is better)
Translates to: NFKENVCFPVRYYWV*VTSQSGGGQVCVCG
Trigger: CCCACACACACACACTTGACCACCACCTGACTGTGAAGTAACCAACACCCAATAATAGCGGACAGGAAAACAAACATTTTCCTTAAAGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR CAA 90 bp GAGATACCAGTGGGGAGCAGGTCTACCCACCACCCCACACCCAGGCAGCTCCCCTCGGCCCCAGGCTCCTaGGCCTGTCTCCCGTCTCCC +
Preference number: 3 (lower is better)
Translates to: EIPVGSRSTHHPTPRQLPSAPGS*ACLPSP
Trigger: GGGAGACGGGAGACAGGCCAAGGAGCCTGGGGCCGA...GGGGAGCTGCCTGGGTGTGGGGTGGTGGGTAGACCTGCTCCCCACTGGTATCTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR GCA 72 bp GGTGGGGCAGATGCCCTCCTGGGCAGGCCGAGATGCTaGACACAGCAGGAGCCAGACAAGTGGGGTGCAGGG +
Preference number: 3 (lower is better)
Translates to: GGADALLGRPRC*TQQEPDKWGAG
Trigger: CCCTGCACCCCACTTGTCTGGCTCCTGCTGTGTGCAGCATCTCGGCCTGCCCAGGAGGGCATCTGCCCCACC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR TCA 72 bp CAGAGCCCACTCCACTGTGAGGAGTCTCCCTGGGCATaGCACTCCCCTCCTGCAGGGCCCCACGCCTCTCTC +
Preference number: 3 (lower is better)
Translates to: QSPLHCEESPWA*HSPPAGPHASL
Trigger: GAGAGAGGCGTGGGGCCCTGCAGGAGGGGAGTGTCATGCCCAGGGAGACTCCTCACAGTGGAGTGGGCTCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR CCA 72 bp GGGCTGTGGCATGGGGGCCTACACCTGAGATACCAGTaGGGAGCAGGTCTACCCACCACCCCACACCCAGGC +
Preference number: 3 (lower is better)
Translates to: GLWHGGLHLRYQ*GAGLPTTPHPG
Trigger: GCCTGGGTGTGGGGTGGTGGGTAGACCTGCTCCCCACTGGTATCTCAGGTGTAGGCCCCCATGCCACAGCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR GCA 72 bp GGCAGGGGGCAGAACTGCCCAGTACAGCTGTCCCAATaGCCCACAGGCCCACTGCCCACTCAAAGGCAAAGG +
Preference number: 3 (lower is better)
Translates to: GRGQNCPVQLSQ*PTGPLPTQRQR
Trigger: CCTTTGCCTTTGAGTGGGCAGTGGGCCTGTGGGGCATTGGGACAGCTGTACTGGGCAGTTCTGCCCCCTGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR CCA 72 bp CTGCCTCCCTCCGTGCACTGTCCAGGCCCTCCTAAGTaGGCTTTCCCTGCCTACCTCCCTAGACAGGCCCTT +
Preference number: 3 (lower is better)
Translates to: LPPSVHCPGPPK*AFPAYLPRQAL
Trigger: AAGGGCCTGTCTAGGGAGGTAGGCAGGGAAAGCCCACTTAGGAGGGCCTGGACAGTGCACGGAGGGAGGCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR-3UTR CAA 90 bp GGGGCAGAACTGCCCAGTACAGCTGTCCCAATGCCCCACAGGCCCACTGCCCACCAGAGCTGTAACCTGTaGGGTGAGAGACCCCTAGGG +
Preference number: 3 (lower is better)
Translates to: GAELPSTAVPMPHRPTAHQSCNL*GERPLG
Trigger: CCCTAGGGGTCTCTCACCCAACAGGTTACAGCTCTG...GTGGGCAGTGGGCCTGTGGGGCATTGGGACAGCTGTACTGGGCAGTTCTGCCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR GCA 72 bp TTAGTCGCTCTGGGCACCAACTGCCAGGCTCTGGGTTaGCATGGCAACGGACTAGCTAGGGAAGGGGAGGGG +
Preference number: 3 (lower is better)
Translates to: LVALGTNCQALG*HGNGLAREGEG
Trigger: CCCCTCCCCTTCCCTAGCTAGTCCGTTGCCATGGCAACCCAGAGCCTGGCAGTTGGTGCCCAGAGCGACTAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR GCA 72 bp AGGGGTCTGCTTGCTCACGCCCCTAGCCTCTCGGCCTaGCTGCTATTCTCAGGGTGGTCAGTGGGTATAGGG +
Preference number: 3 (lower is better)
Translates to: RGLLAHAPSLSA*LLFSGWSVGIG
Trigger: CCCTATACCCACTGACCACCCTGAGAATAGCAGGCAGGCCGAGAGGCTAGGGGCGTGAGCAAGCAGACCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR CCA 72 bp AGTCTCGGGACTCCAGAGCTTGTCCCCAGAAGCTCTTaGCTCTCGAGAGAGCTGCCACCTGGCCAGGCTTCC +
Preference number: 3 (lower is better)
Translates to: SLGTPELVPRSS*LSRELPPGQAS
Trigger: GGAAGCCTGGCCAGGTGGCAGCTCTCTCGAGAGCCAAGAGCTTCTGGGGACAAGCTCTGGAGTCCCGAGACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR CCA 72 bp CTGCAGAGCTCTGGTGCGGAGAGACAAGAGACCACCTaGTCCCCTACGCCCATCACAGCAAGGAAGCCCCCA +
Preference number: 3 (lower is better)
Translates to: LQSSGAERQETT*SPTPITARKPP
Trigger: TGGGGGCTTCCTTGCTGTGATGGGCGTAGGGGACCAGGTGGTCTCTTGTCTCTCCGCACCAGAGCTCTGCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR-3UTR CAA 90 bp AAGGGGCACACAGGCAGGGGGCAGAACTGCCCAGTACAGCTGTCCCAATGCCCCCCAGCAAGAAGTCCCTaGGGCAGCACAGTAGAGACA +
Preference number: 3 (lower is better)
Translates to: KGHTGRGQNCPVQLSQCPPARSP*GSTVET
Trigger: TGTCTCTACTGTGCTGCCCAAGGGACTTCTTGCTGG...GGGGCATTGGGACAGCTGTACTGGGCAGTTCTGCCCCCTGCCTGTGTGCCCCTT
61% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR CAA 90 bp CAGAACTGCCCAGTACAGCTGTCCCAATGCCCCACAGGCCCACTGCCCACTCAAGGCTGGTGGCACCCTTaGCCTCTGCTTCTGTCTGGT +
Preference number: 3 (lower is better)
Translates to: QNCPVQLSQCPTGPLPTQGWWHP*PLLLSG
Trigger: ACCAGACAGAAGCAGAGGCAAAGGGTGCCACCAGCC...TTGAGTGGGCAGTGGGCCTGTGGGGCATTGGGACAGCTGTACTGGGCAGTTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR TCA 72 bp ACCCAGGCAGCTCCCCAGGGCTACTTGGAAGACACTTaGAGGGGGCTGGTGGCACCCTTTGCCTCTGCTTCT +
Preference number: 3 (lower is better)
Translates to: TQAAPQGYLEDT*RGLVAPFASAS
Trigger: AGAAGCAGAGGCAAAGGGTGCCACCAGCCCCCTTCAAGTGTCTTCCAAGTAGCCCTGGGGAGCTGCCTGGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR TCA 72 bp ACACTCCCCTCCTGCAGGGCCCCACGCCTCTCTCCATaGAGCTCCAAGCTCCTAGCCTCCTGTACTCAGTGT +
Preference number: 3 (lower is better)
Translates to: TLPSCRAPRLSP*SSKLLASCTQC
Trigger: ACACTGAGTACAGGAGGCTAGGAGCTTGGAGCTTCATGGAGAGAGGCGTGGGGCCCTGCAGGAGGGGAGTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR GCA 72 bp GGCAGGGCTAGGTTGGCGGCACCTGTTTTGGTCTTCTaGAGAGCTGGCCCTCCCTGGGTTTCAAGAGCTGCT +
Preference number: 3 (lower is better)
Translates to: GRARLAAPVLVF*RAGPPWVSRAA
Trigger: AGCAGCTCTTGAAACCCAGGGAGGGCCAGCTCTGCAGAAGACCAAAACAGGTGCCGCCAACCTAGCCCTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR GCA 72 bp CATGGGCCAGCCCCAGATGTCAGCACCATCAATAGCTaGCTCCCTCCGTGCACTGTCCAGGCCCTCCTAAGT +
Preference number: 3 (lower is better)
Translates to: HGPAPDVSTINS*LPPCTVQALLS
Trigger: ACTTAGGAGGGCCTGGACAGTGCACGGAGGGAGGCAGCTATTGATGGTGCTGACATCTGGGGCTGGCCCATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR CCA 72 bp AGAAAGATGGGAGGAGGGTCTGGGGCAGGGCTAGGTTaGCGGCACCTGTTTTGGTCTTCTGCAGAGCTGGCC +
Preference number: 3 (lower is better)
Translates to: RKMGGGSGAGLG*RHLFWSSAELA
Trigger: GGCCAGCTCTGCAGAAGACCAAAACAGGTGCCGCCAACCTAGCCCTGCCCCAGACCCTCCTCCCATCTTTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR CCA 72 bp GCCCCAGCTTCGTTTCCAGATGGAAACAGCCCGGTGTaGATCCTTCCACAGCCCCTCCCACAGGAACATGGC +
Preference number: 3 (lower is better)
Translates to: APASFPDGNSPV*ILPQPLPQEHG
Trigger: GCCATGTTCCTGTGGGAGGGGCTGTGGAAGGATCCACACCGGGCTGTTTCCATCTGGAAACGAAGCTGGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR CCA 72 bp GGTGCCTCTTTGGAGGGCCCCAGCTTCGTTTCCAGATaGAAACAGCCCGGTGTGGATCCTTCCACAGCCCCT +
Preference number: 3 (lower is better)
Translates to: GASLEGPSFVSR*KQPGVDPSTAP
Trigger: AGGGGCTGTGGAAGGATCCACACCGGGCTGTTTCCATCTGGAAACGAAGCTGGGGCCCTCCAAAGAGGCACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR-3UTR CAA 90 bp CCTACACCTGAGATACCAGTGGGGAGCAGGTCTACCCACCACCCCACACCCAGGCCAGCAAGAAGTCCCTaGGGCAGCACAGTAGAGACA +
Preference number: 3 (lower is better)
Translates to: PTPEIPVGSRSTHHPTPRPARSP*GSTVET
Trigger: TGTCTCTACTGTGCTGCCCAAGGGACTTCTTGCTGG...CCTGGGTGTGGGGTGGTGGGTAGACCTGCTCCCCACTGGTATCTCAGGTGTAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR CAA 90 bp AAGGGGCACACAGGCAGGGGGCAGAACTGCCCAGTACAGCTGTCCCAATGCCCCCTGGTTAGCAGGACATaGCTTACTCTTGGCCTCCCA +
Preference number: 3 (lower is better)
Translates to: KGHTGRGQNCPVQLSQCPLVSRT*LTLGLP
Trigger: TGGGAGGCCAAGAGTAAGCAATGTCCTGCTAACCAG...GGGGCATTGGGACAGCTGTACTGGGCAGTTCTGCCCCCTGCCTGTGTGCCCCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR CAA 90 bp GGGGCAGAACTGCCCAGTACAGCTGTCCCAATGCCCCACAGGCCCACTGCCCACCTCACTGTTTGTGCTTaGATTGGTGTTGGGAGTGGG +
Preference number: 3 (lower is better)
Translates to: GAELPSTAVPMPHRPTAHLTVCA*IGVGSG
Trigger: CCCACTCCCAACACCAATCAAAGCACAAACAGTGAG...GTGGGCAGTGGGCCTGTGGGGCATTGGGACAGCTGTACTGGGCAGTTCTGCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR GCA 72 bp ATCTCCACACTGGCCCCAGGCCTTGTCATTCACTGTTaGCTCTCTGTGGTGGGTAGGAGTCCCGGAGACCCA +
Preference number: 3 (lower is better)
Translates to: ISTLAPGLVIHC*LSVVGRSPGDP
Trigger: TGGGTCTCCGGGACTCCTACCCACCACAGAGAGGCAACAGTGAATGACAAGGCCTGGGGCCAGTGTGGAGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR GCA 72 bp CCAGATGTCAGCACCATCAATAGCTGCCTCCCTCCGTaGACTGTCCAGGCCCTCCTAAGTGGGCTTTCCCTG +
Preference number: 3 (lower is better)
Translates to: PDVSTINSCLPP*TVQALLSGLSL
Trigger: CAGGGAAAGCCCACTTAGGAGGGCCTGGACAGTGCACGGAGGGAGGCAGCTATTGATGGTGCTGACATCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR-3UTR CAA 90 bp TGTCCCAATGCCCCACAGGCCCACTGCCCACTCAAAGGCAAAGGACAATGCCTTGGCTGGTGGCACCCTTaGCCTCTGCTTCTGTCTGGT +
Preference number: 3 (lower is better)
Translates to: CPNAPQAHCPLKGKGQCLGWWHP*PLLLSG
Trigger: ACCAGACAGAAGCAGAGGCAAAGGGTGCCACCAGCC...AAGGCATTGTCCTTTGCCTTTGAGTGGGCAGTGGGCCTGTGGGGCATTGGGACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR CAA 90 bp AAGGGGCACACAGGCAGGGGGCAGAACTGCCCAGTACAGCTGTCCCAATGCCCCGAGGCACCTCACTGTTaGTGCTTTGATTGGTGTTGG +
Preference number: 3 (lower is better)
Translates to: KGHTGRGQNCPVQLSQCPEAPHC*CFDWCW
Trigger: CCAACACCAATCAAAGCACAAACAGTGAGGTGCCTC...GGGGCATTGGGACAGCTGTACTGGGCAGTTCTGCCCCCTGCCTGTGTGCCCCTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR CAA 90 bp AAGGGGCACACAGGCAGGGGGCAGAACTGCCCAGTACAGCTGTCCCAATGCCCCCCTGAGACCACAACTTaGGAAGGAGTAGCAGATGAA +
Preference number: 3 (lower is better)
Translates to: KGHTGRGQNCPVQLSQCPPETTT*EGVADE
Trigger: TTCATCTGCTACTCCTTCCAAAGTTGTGGTCTCAGG...GGGGCATTGGGACAGCTGTACTGGGCAGTTCTGCCCCCTGCCTGTGTGCCCCTT
58% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR GCA 72 bp CCACAGGCCCACTGCCCACTCAAAGGCAAAGGACAATaGCTTAGCCTAGTCTCGGGACTCCAGAGCTTGTCC +
Preference number: 3 (lower is better)
Translates to: PQAHCPLKGKGQ*LSLVSGLQSLS
Trigger: GGACAAGCTCTGGAGTCCCGAGACTAGGCTAAGGCATTGTCCTTTGCCTTTGAGTGGGCAGTGGGCCTGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR GCA 72 bp GTGGTAGTTCTTCTTGCCATGTCTGCAGAGCTCTGGTaGGGAGAGACAAGAGACCACCTGGTCCCCTACGCC +
Preference number: 3 (lower is better)
Translates to: VVVLLAMSAELW*GETRDHLVPYA
Trigger: GGCGTAGGGGACCAGGTGGTCTCTTGTCTCTCCGCACCAGAGCTCTGCAGACATGGCAAGAAGAACTACCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR CCA 72 bp TGTGGGAAGCAGGGAGAAGAGGTGGTCATCATTGTCTaGACCTCCACCCCAGCCCTGTGCTTGACTGGCAGA +
Preference number: 3 (lower is better)
Translates to: CGKQGEEVVIIV*TSTPALCLTGR
Trigger: TCTGCCAGTCAAGCACAGGGCTGGGGTGGAGGTCCAGACAATGATGACCACCTCTTCTCCCTGCTTCCCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR TCA 72 bp ATGAAGCTCCAAGCTCCTAGCCTCCTGTACTCAGTGTaGCAGTCCTCTCCATCTGTCCCATGTGGCTGGCCG +
Preference number: 3 (lower is better)
Translates to: MKLQAPSLLYSV*QSSPSVPCGWP
Trigger: CGGCCAGCCACATGGGACAGATGGAGAGGACTGTCACACTGAGTACAGGAGGCTAGGAGCTTGGAGCTTCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR GCA 72 bp AGAAAGAACATCCCAGAGGGAAAACCTCTTAGGGCCTaGCCTAGAGGACGGCCAGATCAACTGGGGGACCTG +
Preference number: 3 (lower is better)
Translates to: RKNIPEGKPLRA*PRGRPDQLGDL
Trigger: CAGGTCCCCCAGTTGATCTGGCCGTCCTCTAGGGCAGGCCCTAAGAGGTTTTCCCTCTGGGATGTTCTTTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR GCA 72 bp TTCCCTGCCTACCTCCCTAGACAGGCCCTTCAGCCCTaGATCGGTTTGTTTCAGAGCTTCCTGCTCTGTAGG +
Preference number: 3 (lower is better)
Translates to: FPAYLPRQALQP*IGLFQSFLLCR
Trigger: CCTACAGAGCAGGAAGCTCTGAAACAAACCGATGCAGGGCTGAAGGGCCTGTCTAGGGAGGTAGGCAGGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR CCA 72 bp TTGGTGACAGGGGACCTTTCCACAGACTCGAGAACCTaGTCCAGGCTCCCTGAACCTGCTAAGACTAAGCGG +
Preference number: 3 (lower is better)
Translates to: LVTGDLSTDSRT*SRLPEPAKTKR
Trigger: CCGCTTAGTCTTAGCAGGTTCAGGGAGCCTGGACCAGGTTCTCGAGTCTGTGGAAAGGTCCCCTGTCACCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR-3UTR CAA 90 bp CTGGCCCTGCACCCTGACCAGGGCAGTAGGAGGCACCTCACTGTTTGTGCTTTGCCTGAGACCACAACTTaGGAAGGAGTAGCAGATGAA +
Preference number: 3 (lower is better)
Translates to: LALHPDQGSRRHLTVCALPETTT*EGVADE
Trigger: TTCATCTGCTACTCCTTCCAAAGTTGTGGTCTCAGG...CAAAGCACAAACAGTGAGGTGCCTCCTACTGCCCTGGTCAGGGTGCAGGGCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR CAA 90 bp AAGTCACCTTCAACCAAGAATGATGGCCAAACAAGTAGGGACAGAGCCCACTCCTGGGGCAGGGCTAGGTaGGCGGCACCTGTTTTGGTC +
Preference number: 3 (lower is better)
Translates to: KSPSTKNDGQTSRDRAHSWGRAR*AAPVLV
Trigger: GACCAAAACAGGTGCCGCCAACCTAGCCCTGCCCCA...GGAGTGGGCTCTGTCCCTACTTGTTTGGCCATCATTCTTGGTTGAAGGTGACTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR CCA 72 bp TTGTGGCTAAGGGAGCTCTGTTCTCCACATCCAGGCTaGCCAGTCCCCTCCTCTCCCCAGAACAGTCTTTTT +
Preference number: 3 (lower is better)
Translates to: LWLRELCSPHPG*PVPSSPQNSLF
Trigger: AAAAAGACTGTTCTGGGGAGAGGAGGGGACTGGCCAGCCTGGATGTGGAGAACAGAGCTCCCTTAGCCACAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR CCA 72 bp GCACCTGTTTTGGTCTTCTGCAGAGCTGGCCCTCCCTaGGTTTCAAGAGCTGCTTGGATCACATGGAGGGAA +
Preference number: 3 (lower is better)
Translates to: APVLVFCRAGPP*VSRAAWITWRE
Trigger: TTCCCTCCATGTGATCCAAGCAGCTCTTGAAACCCAGGGAGGGCCAGCTCTGCAGAAGACCAAAACAGGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR CCA 72 bp CTCCCTGAAGTTTTAGCCCCTCATGAACTGGAAGGATaGGAGAGCTGTCACCTCTGTTCCTGTCTGTCCCCC +
Preference number: 3 (lower is better)
Translates to: LPEVLAPHELEG*ESCHLCSCLSP
Trigger: GGGGGACAGACAGGAACAGAGGTGACAGCTCTCCCATCCTTCCAGTTCATGAGGGGCTAAAACTTCAGGGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR CCA 72 bp ACAGTGGTAGTTCTTCTTGCCATGTCTGCAGAGCTCTaGTGCGGAGAGACAAGAGACCACCTGGTCCCCTAC +
Preference number: 3 (lower is better)
Translates to: TVVVLLAMSAEL*CGETRDHLVPY
Trigger: GTAGGGGACCAGGTGGTCTCTTGTCTCTCCGCACCAGAGCTCTGCAGACATGGCAAGAAGAACTACCACTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR-3UTR CAA 90 bp TGTCCCAATGCCCCACAGGCCCACTGCCCACTCAAAGGCAAAGGACAATGCCTTGAGGCACCTCACTGTTaGTGCTTTGATTGGTGTTGG +
Preference number: 3 (lower is better)
Translates to: CPNAPQAHCPLKGKGQCLEAPHC*CFDWCW
Trigger: CCAACACCAATCAAAGCACAAACAGTGAGGTGCCTC...AAGGCATTGTCCTTTGCCTTTGAGTGGGCAGTGGGCCTGTGGGGCATTGGGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR-3UTR CAA 90 bp TCACCTCCTACCCACATGTCTCCCAGGTTGACTCCATTAAGGCCCTGGGATCCTGGTTTCAAGAGCTGCTaGGATCACATGGAGGGAATG +
Preference number: 3 (lower is better)
Translates to: SPPTHMSPRLTPLRPWDPGFKSC*DHMEGM
Trigger: CATTCCCTCCATGTGATCCAAGCAGCTCTTGAAACC...AGGATCCCAGGGCCTTAATGGAGTCAACCTGGGAGACATGTGGGTAGGAGGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR-3UTR CAA 90 bp AATGTCAGGGGGTTTCACTTGGCTCCAGGGTATAAGAATCCATTTGGCATTTTGTGGCCGGGTGCCTCTTaGGAGGGCCCCAGCTTCGTT +
Preference number: 3 (lower is better)
Translates to: NVRGFHLAPGYKNPFGILWPGAS*EGPSFV
Trigger: AACGAAGCTGGGGCCCTCCAAAGAGGCACCCGGCCA...CAAAATGCCAAATGGATTCTTATACCCTGGAGCCAAGTGAAACCCCCTGACATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR TCA 72 bp CTCCCTGAACCTGCTAAGACTAAGCGGTTTCCCATCTaGCTTAAGCTTATTTCGGGAAGGCCACACGCTCCC +
Preference number: 3 (lower is better)
Translates to: LPEPAKTKRFPI*LKLISGRPHAP
Trigger: GGGAGCGTGTGGCCTTCCCGAAATAAGCTTAAGTCAGATGGGAAACCGCTTAGTCTTAGCAGGTTCAGGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR GCA 72 bp AGACACTTGAAGGGGGCTGGTGGCACCCTTTGCCTCTaGTTCTGTCTGGTTAGCAGGACATTGCTTACTCTT +
Preference number: 3 (lower is better)
Translates to: RHLKGAGGTLCL*FCLVSRTLLTL
Trigger: AAGAGTAAGCAATGTCCTGCTAACCAGACAGAAGCAGAGGCAAAGGGTGCCACCAGCCCCCTTCAAGTGTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR TCA 72 bp ACCAGGGCAGTAGGAGGCACCTCACTGTTTGTGCTTTaGTTGGTGTTGGGAGTGGGTCATAAAGAGGATGGT +
Preference number: 3 (lower is better)
Translates to: TRAVGGTSLFVL*LVLGVGHKEDG
Trigger: ACCATCCTCTTTATGACCCACTCCCAACACCAATCAAAGCACAAACAGTGAGGTGCCTCCTACTGCCCTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR GCA 72 bp GCTCATTTTCACAGTGGTAGTTCTTCTTGCCATGTCTaGAGAGCTCTGGTGCGGAGAGACAAGAGACCACCT +
Preference number: 3 (lower is better)
Translates to: AHFHSGSSSCHV*RALVRRDKRPP
Trigger: AGGTGGTCTCTTGTCTCTCCGCACCAGAGCTCTGCAGACATGGCAAGAAGAACTACCACTGTGAAAATGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR CCA 72 bp CTATTATTGGGTGTTGGTTACTTCACAGTCAGGTGGTaGTCAAGTGTGTGTGTGTGGGTGCGTGTGTGCGTG +
Preference number: 3 (lower is better)
Translates to: LLLGVGYFTVRW*SSVCVWVRVCV
Trigger: CACGCACACACGCACCCACACACACACACTTGACCACCACCTGACTGTGAAGTAACCAACACCCAATAATAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR CCA 72 bp ATGTTGCCACGTCTCCAAGGGAAATGTTCCCAAGCTTaGAGGATAGCCTCTCTGAACAAGAGGCCTGTGGTT +
Preference number: 3 (lower is better)
Translates to: MLPRLQGKCSQA*RIASLNKRPVV
Trigger: AACCACAGGCCTCTTGTTCAGAGAGGCTATCCTCCAAGCTTGGGAACATTTCCCTTGGAGACGTGGCAACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR GCA 72 bp TCCTTCCTAGCTCATTTTCACAGTGGTAGTTCTTCTTaGCATGTCTGCAGAGCTCTGGTGCGGAGAGACAAG +
Preference number: 3 (lower is better)
Translates to: SFLAHFHSGSSS*HVCRALVRRDK
Trigger: CTTGTCTCTCCGCACCAGAGCTCTGCAGACATGGCAAGAAGAACTACCACTGTGAAAATGAGCTAGGAAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR-3UTR CAA 90 bp ACTTGGCTCCAGGGTATAAGAATCCATTTGGCATTTTGTGACAATTGTACTTCTCTACTTGGAAGACACTaGAAGGGGGCTGGTGGCACC +
Preference number: 3 (lower is better)
Translates to: TWLQGIRIHLAFCDNCTSLLGRH*KGAGGT
Trigger: GGTGCCACCAGCCCCCTTCAAGTGTCTTCCAAGTAG...AGAAGTACAATTGTCACAAAATGCCAAATGGATTCTTATACCCTGGAGCCAAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR CCA 72 bp TTAGATCATTGCTCTGTCTCAAAGGTCCCTGTGGCCTaGTCCCCATTGTTGAAATGGACCCTCTCTTTAAAG +
Preference number: 3 (lower is better)
Translates to: LDHCSVSKVPVA*SPLLKWTLSLK
Trigger: CTTTAAAGAGAGGGTCCATTTCAACAATGGGGACCAGGCCACAGGGACCTTTGAGACAGAGCAATGATCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR CCA 72 bp GACTCAGCCCAGAACTCAATGTCAGGGGGTTTCACTTaGCTCCAGGGTATAAGAATCCATTTGGCATTTTGT +
Preference number: 3 (lower is better)
Translates to: DSAQNSMSGGFT*LQGIRIHLAFC
Trigger: ACAAAATGCCAAATGGATTCTTATACCCTGGAGCCAAGTGAAACCCCCTGACATTGAGTTCTGGGCTGAGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR CCA 72 bp AAAATGTTTGTTTTCCTGTCCGCTATTATTGGGTGTTaGTTACTTCACAGTCAGGTGGTGGTCAAGTGTGTG +
Preference number: 3 (lower is better)
Translates to: KMFVFLSAIIGC*LLHSQVVVKCV
Trigger: CACACACTTGACCACCACCTGACTGTGAAGTAACCAACACCCAATAATAGCGGACAGGAAAACAAACATTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR CCA 72 bp TTGAAATGGACCCTCTCTTTAAAGTTCCCCCTGAAGTaGCATCTGAGGTTTTATAAGTCACCTTCAACCAAG +
Preference number: 3 (lower is better)
Translates to: LKWTLSLKFPLK*HLRFYKSPSTK
Trigger: CTTGGTTGAAGGTGACTTATAAAACCTCAGATGCCACTTCAGGGGGAACTTTAAAGAGAGGGTCCATTTCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR-3UTR CAA 90 bp ACTTGGCTCCAGGGTATAAGAATCCATTTGGCATTTTGTGACAATTGTACTTCTGAAATGTTCCCAAGCTaGGAGGATAGCCTCTCTGAA +
Preference number: 3 (lower is better)
Translates to: TWLQGIRIHLAFCDNCTSEMFPS*EDSLSE
Trigger: TTCAGAGAGGCTATCCTCCAAGCTTGGGAACATTTC...AGAAGTACAATTGTCACAAAATGCCAAATGGATTCTTATACCCTGGAGCCAAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR CCA 72 bp TTTAAGGAAAATGTTTGTTTTCCTGTCCGCTATTATTaGGTGTTGGTTACTTCACAGTCAGGTGGTGGTCAA +
Preference number: 3 (lower is better)
Translates to: FKENVCFPVRYY*VLVTSQSGGGQ
Trigger: TTGACCACCACCTGACTGTGAAGTAACCAACACCCAATAATAGCGGACAGGAAAACAAACATTTTCCTTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR CAA 72 bp CCACTCCTAGGCCCGGGCCCCTCGGCCCCAGGCTCCTaGGCCTGTCTCCCGTCTCCCGGCCACCCTGTTGGG +
Preference number: 4 (lower is better)
Translates to: PLLGPGPSAPGS*ACLPSPGHPVG
Trigger: CCCAACAGGGTGGCCGGGAGACGGGAGACAGGCCAAGGAGCCTGGGGCCGAGGGGCCCGGGCCTAGGAGTGG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR GCA 90 bp GCGTGTGCGTCCACTCCTAGGCCCGGGCCCCTCGGCCCCAGGCTCCTTGGCCTGAGAGCGGGGAAGCTGTaGCGGTGCTCGCTGCAGTGG +
Preference number: 4 (lower is better)
Translates to: ACASTPRPGPLGPRLLGLRAGKL*RCSLQW
Trigger: CCACTGCAGCGAGCACCGGCACAGCTTCCCCGCTCT...CAGGCCAAGGAGCCTGGGGCCGAGGGGCCCGGGCCTAGGAGTGGACGCACACGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp GTGCGTCCACTCCTAGGCCCGGGCCCCTCGGCCCCAGGCTCCTTGGCCTGTCTCCGCACAGCCCCTGGCTaGCACACGCACAGCAGCGCT +
Preference number: 4 (lower is better)
Translates to: VRPLLGPGPSAPGSLACLRTAPG*HTHSSA
Trigger: AGCGCTGCTGTGCGTGTGCCAGCCAGGGGCTGTGCG...GAGACAGGCCAAGGAGCCTGGGGCCGAGGGGCCCGGGCCTAGGAGTGGACGCAC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp GTGCGTCCACTCCTAGGCCCGGGCCCCTCGGCCCCAGGCTCCTTGGCCTGTCTCCACGGGCAGCACCGGTaGCTCGCCCAGCTTCTGTGC +
Preference number: 4 (lower is better)
Translates to: VRPLLGPGPSAPGSLACLHGQHR*LAQLLC
Trigger: GCACAGAAGCTGGGCGAGCCACCGGTGCTGCCCGTG...GAGACAGGCCAAGGAGCCTGGGGCCGAGGGGCCCGGGCCTAGGAGTGGACGCAC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp GTGCGTCCACTCCTAGGCCCGGGCCCCTCGGCCCCAGGCTCCTTGGCCTGTCTCTCCCGCTGCTGCCCGTaGGCACCAGGGGAAGCCTGT +
Preference number: 4 (lower is better)
Translates to: VRPLLGPGPSAPGSLACLSRCCP*APGEAC
Trigger: ACAGGCTTCCCCTGGTGCCCACGGGCAGCAGCGGGA...GAGACAGGCCAAGGAGCCTGGGGCCGAGGGGCCCGGGCCTAGGAGTGGACGCAC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp GCGTGTGCGTCCACTCCTAGGCCCGGGCCCCTCGGCCCCAGGCTCCTTGGCCTGTGTAGTGCGTGGTGGTaGAGGTGCTGGGGGCCAGAT +
Preference number: 4 (lower is better)
Translates to: ACASTPRPGPLGPRLLGLCSAWW*RCWGPD
Trigger: ATCTGGCCCCCAGCACCTCCACCACCACGCACTACA...CAGGCCAAGGAGCCTGGGGCCGAGGGGCCCGGGCCTAGGAGTGGACGCACACGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp GGGGCAGAACTGCCCAGTACAGCTGTCCCAATGCCCCACAGGCCCACTGCCCACGGGGTGACAGGAAGCTaGGCCGCTCCAGCGCCCCGG +
Preference number: 4 (lower is better)
Translates to: GAELPSTAVPMPHRPTAHGVTGS*AAPAPR
Trigger: CCGGGGCGCTGGAGCGGCCCAGCTTCCTGTCACCCC...GTGGGCAGTGGGCCTGTGGGGCATTGGGACAGCTGTACTGGGCAGTTCTGCCCC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp CTCCTGGGCAGGCCGAGATGCTGCACACAGCAGGAGCCAGACAAGTGGGGTGCAGCGTCGGCGCTCAGCTaGCGCTGCAGCGGGTGGTGG +
Preference number: 4 (lower is better)
Translates to: LLGRPRCCTQQEPDKWGAASALS*RCSGWW
Trigger: CCACCACCCGCTGCAGCGCCAGCTGAGCGCCGACGC...TGCACCCCACTTGTCTGGCTCCTGCTGTGTGCAGCATCTCGGCCTGCCCAGGAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR TCA 90 bp GCGTGTGCGTCCACTCCTAGGCCCGGGCCCCTCGGCCCCAGGCTCCTTGGCCTGCCCAAGGAAAGAGGCTaGATCCAGCTTGAGGGCATC +
Preference number: 4 (lower is better)
Translates to: ACASTPRPGPLGPRLLGLPKERG*IQLEGI
Trigger: GATGCCCTCAAGCTGGATTCAGCCTCTTTCCTTGGG...CAGGCCAAGGAGCCTGGGGCCGAGGGGCCCGGGCCTAGGAGTGGACGCACACGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR GCA 90 bp CTCCTGGGCAGGCCGAGATGCTGCACACAGCAGGAGCCAGACAAGTGGGGTGCAGCGCTCAGCTGGCGCTaGAGCGGGTGGTGGGAGCTC +
Preference number: 4 (lower is better)
Translates to: LLGRPRCCTQQEPDKWGAALSWR*SGWWEL
Trigger: GAGCTCCCACCACCCGCTGCAGCGCCAGCTGAGCGC...TGCACCCCACTTGTCTGGCTCCTGCTGTGTGCAGCATCTCGGCCTGCCCAGGAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR GCA 90 bp GGCACACAGGCAGGGGGCAGAACTGCCCAGTACAGCTGTCCCAATGCCCCACAGCACCACCCCCACCACTaGTCCCGCTGCTGCCCGTGG +
Preference number: 4 (lower is better)
Translates to: GTQAGGRTAQYSCPNAPQHHPHH*SRCCPW
Trigger: CCACGGGCAGCAGCGGGAGCAGTGGTGGGGGTGGTG...CTGTGGGGCATTGGGACAGCTGTACTGGGCAGTTCTGCCCCCTGCCTGTGTGCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp GTGCGTCCACTCCTAGGCCCGGGCCCCTCGGCCCCAGGCTCCTTGGCCTGTCTCCCTCCTTGGCAATGGTaGAGATCTCAGCCGCTGAGC +
Preference number: 4 (lower is better)
Translates to: VRPLLGPGPSAPGSLACLPPWQW*RSQPLS
Trigger: GCTCAGCGGCTGAGATCTCCACCATTGCCAAGGAGG...GAGACAGGCCAAGGAGCCTGGGGCCGAGGGGCCCGGGCCTAGGAGTGGACGCAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR GCA 90 bp GAGATACCAGTGGGGAGCAGGTCTACCCACCACCCCACACCCAGGCAGCTCCCCGGCCGGCCCAGCAGATaGATCTGTGGTGGAGGAGGC +
Preference number: 4 (lower is better)
Translates to: EIPVGSRSTHHPTPRQLPGRPSR*ICGGGG
Trigger: GCCTCCTCCACCACAGATGCATCTGCTGGGCCGGCC...GGGGAGCTGCCTGGGTGTGGGGTGGTGGGTAGACCTGCTCCCCACTGGTATCTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp CTCCTGGGCAGGCCGAGATGCTGCACACAGCAGGAGCCAGACAAGTGGGGTGCACGCACAGCCCCTGGCTaGCACACGCACAGCAGCGCT +
Preference number: 4 (lower is better)
Translates to: LLGRPRCCTQQEPDKWGARTAPG*HTHSSA
Trigger: AGCGCTGCTGTGCGTGTGCCAGCCAGGGGCTGTGCG...TGCACCCCACTTGTCTGGCTCCTGCTGTGTGCAGCATCTCGGCCTGCCCAGGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp CTCCTGGGCAGGCCGAGATGCTGCACACAGCAGGAGCCAGACAAGTGGGGTGCATCCCGCTGCTGCCCGTaGGCACCAGGGGAAGCCTGT +
Preference number: 4 (lower is better)
Translates to: LLGRPRCCTQQEPDKWGASRCCP*APGEAC
Trigger: ACAGGCTTCCCCTGGTGCCCACGGGCAGCAGCGGGA...TGCACCCCACTTGTCTGGCTCCTGCTGTGTGCAGCATCTCGGCCTGCCCAGGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp GAGATACCAGTGGGGAGCAGGTCTACCCACCACCCCACACCCAGGCAGCTCCCCAGGAAGGACACACGCTaGCTCAGGCTGTCGGCGCCC +
Preference number: 4 (lower is better)
Translates to: EIPVGSRSTHHPTPRQLPRKDTR*LRLSAP
Trigger: GGGCGCCGACAGCCTGAGCCAGCGTGTGTCCTTCCT...GGGGAGCTGCCTGGGTGTGGGGTGGTGGGTAGACCTGCTCCCCACTGGTATCTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR GCA 90 bp GTGCGTCCACTCCTAGGCCCGGGCCCCTCGGCCCCAGGCTCCTTGGCCTGTCTCACCTCGATGAGGTTGTaGTGGACGAAGAGGAACTGC +
Preference number: 4 (lower is better)
Translates to: VRPLLGPGPSAPGSLACLTSMRL*WTKRNC
Trigger: GCAGTTCCTCTTCGTCCAGCACAACCTCATCGAGGT...GAGACAGGCCAAGGAGCCTGGGGCCGAGGGGCCCGGGCCTAGGAGTGGACGCAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp TGGGAAGCTAAGGGGCACACAGGCAGGGGGCAGAACTGCCCAGTACAGCTGTCCTGGTGGTGGAGGTGCTaGGGGCCAGATCCCCGGGCA +
Preference number: 4 (lower is better)
Translates to: WEAKGHTGRGQNCPVQLSWWWRC*GPDPRA
Trigger: TGCCCGGGGATCTGGCCCCCAGCACCTCCACCACCA...GGACAGCTGTACTGGGCAGTTCTGCCCCCTGCCTGTGTGCCCCTTAGCTTCCCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR GCA 90 bp AAGGCTCCTCCCTATCTCAATGGGAAGCTAAGGGGCACACAGGCAGGGGGCAGAGCGCTCAGCTGGCGCTaGAGCGGGTGGTGGGAGCTC +
Preference number: 4 (lower is better)
Translates to: KAPPYLNGKLRGTQAGGRALSWR*SGWWEL
Trigger: GAGCTCCCACCACCCGCTGCAGCGCCAGCTGAGCGC...TCTGCCCCCTGCCTGTGTGCCCCTTAGCTTCCCATTGAGATAGGGAGGAGCCTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR GCA 90 bp TGCTTGCTCACGCCCCTAGCCTCTCGGCCTGCCTGCTATTCTCAGGGTGGTCAGAGAGCGGGGAAGCTGTaGCGGTGCTCGCTGCAGTGG +
Preference number: 4 (lower is better)
Translates to: CLLTPLASRPACYSQGGQRAGKL*RCSLQW
Trigger: CCACTGCAGCGAGCACCGGCACAGCTTCCCCGCTCT...CTGACCACCCTGAGAATAGCAGGCAGGCCGAGAGGCTAGGGGCGTGAGCAAGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp CCTACACCTGAGATACCAGTGGGGAGCAGGTCTACCCACCACCCCACACCCAGGCGCACACCATCAGGCTaGCCAGGCTGGCGAAGGTCG +
Preference number: 4 (lower is better)
Translates to: PTPEIPVGSRSTHHPTPRRTPSG*PGWRRS
Trigger: CGACCTTCGCCAGCCTGGCCAGCCTGATGGTGTGCG...CCTGGGTGTGGGGTGGTGGGTAGACCTGCTCCCCACTGGTATCTCAGGTGTAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp GGCACACAGGCAGGGGGCAGAACTGCCCAGTACAGCTGTCCCAATGCCCCACAGCAGATGCATCTGTGGTaGAGGAGGCGGGCGGCTCCA +
Preference number: 4 (lower is better)
Translates to: GTQAGGRTAQYSCPNAPQQMHLW*RRRAAP
Trigger: TGGAGCCGCCCGCCTCCTCCACCACAGATGCATCTG...CTGTGGGGCATTGGGACAGCTGTACTGGGCAGTTCTGCCCCCTGCCTGTGTGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp CTCCTGGGCAGGCCGAGATGCTGCACACAGCAGGAGCCAGACAAGTGGGGTGCACAGCAGATGCATCTGTaGTGGAGGAGGCGGGCGGCT +
Preference number: 4 (lower is better)
Translates to: LLGRPRCCTQQEPDKWGAQQMHL*WRRRAA
Trigger: AGCCGCCCGCCTCCTCCACCACAGATGCATCTGCTG...TGCACCCCACTTGTCTGGCTCCTGCTGTGTGCAGCATCTCGGCCTGCCCAGGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp GTGGGGTGGGGCAGATGCCCTCCTGGGCAGGCCGAGATGCTGCACACAGCAGGAGAGGTGAAGGTGACTTaGTGCAGCTTGATGGCCGGC +
Preference number: 4 (lower is better)
Translates to: VGWGRCPPGQAEMLHTAGEVKVT*CSLMAG
Trigger: GCCGGCCATCAAGCTGCACCAAGTCACCTTCACCTC...TCCTGCTGTGTGCAGCATCTCGGCCTGCCCAGGAGGGCATCTGCCCCACCCCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR GCA 90 bp GCCCTCCTGGGCAGGCCGAGATGCTGCACACAGCAGGAGCCAGACAAGTGGGGTTGGACGAAGAGGAACTaGAGGCGGCTCATACCTCGC +
Preference number: 4 (lower is better)
Translates to: ALLGRPRCCTQQEPDKWGWTKRN*RRLIPR
Trigger: GCGAGGTATGAGCCGCCTGCAGTTCCTCTTCGTCCA...ACCCCACTTGTCTGGCTCCTGCTGTGTGCAGCATCTCGGCCTGCCCAGGAGGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR GCA 90 bp GCCCTCCTGGGCAGGCCGAGATGCTGCACACAGCAGGAGCCAGACAAGTGGGGTGTGAAGGTGACTTGGTaGAGCTTGATGGCCGGCCCA +
Preference number: 4 (lower is better)
Translates to: ALLGRPRCCTQQEPDKWGVKVTW*SLMAGP
Trigger: TGGGCCGGCCATCAAGCTGCACCAAGTCACCTTCAC...ACCCCACTTGTCTGGCTCCTGCTGTGTGCAGCATCTCGGCCTGCCCAGGAGGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR GCA 90 bp CCTACACCTGAGATACCAGTGGGGAGCAGGTCTACCCACCACCCCACACCCAGGGGCCAGGCTGTCTCCTaGAGCACCTGTGCGCACTTC +
Preference number: 4 (lower is better)
Translates to: PTPEIPVGSRSTHHPTPRGQAVS*STCAHF
Trigger: GAAGTGCGCACAGGTGCTGCAGGAGACAGCCTGGCC...CCTGGGTGTGGGGTGGTGGGTAGACCTGCTCCCCACTGGTATCTCAGGTGTAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR GCA 90 bp TGGGAAGCTAAGGGGCACACAGGCAGGGGGCAGAACTGCCCAGTACAGCTGTCCTGTGCCGGTGCTCGCTaGAGTGGTAGGCCGGCTTCA +
Preference number: 4 (lower is better)
Translates to: WEAKGHTGRGQNCPVQLSCAGAR*SGRPAS
Trigger: TGAAGCCGGCCTACCACTGCAGCGAGCACCGGCACA...GGACAGCTGTACTGGGCAGTTCTGCCCCCTGCCTGTGTGCCCCTTAGCTTCCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp GCCCTCCTGGGCAGGCCGAGATGCTGCACACAGCAGGAGCCAGACAAGTGGGGTAAGGTCAGGCAGGTGTaGTTGAAGCGGCGGCTGTTG +
Preference number: 4 (lower is better)
Translates to: ALLGRPRCCTQQEPDKWGKVRQV*LKRRLL
Trigger: CAACAGCCGCCGCTTCAACCACACCTGCCTGACCTT...ACCCCACTTGTCTGGCTCCTGCTGTGTGCAGCATCTCGGCCTGCCCAGGAGGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp AAGGCTCCTCCCTATCTCAATGGGAAGCTAAGGGGCACACAGGCAGGGGGCAGATGGTGGTGGAGGTGCTaGGGGCCAGATCCCCGGGCA +
Preference number: 4 (lower is better)
Translates to: KAPPYLNGKLRGTQAGGRWWWRC*GPDPRA
Trigger: TGCCCGGGGATCTGGCCCCCAGCACCTCCACCACCA...TCTGCCCCCTGCCTGTGTGCCCCTTAGCTTCCCATTGAGATAGGGAGGAGCCTT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp CTGGCCCTGCACCCTGACCAGGGCAGTAGGAGGCACCTCACTGTTTGTGCTTTGGCCGCAGGGAGGGACTaGCACTCGAAGGCCAGATCG +
Preference number: 4 (lower is better)
Translates to: LALHPDQGSRRHLTVCALAAGRD*HSKARS
Trigger: CGATCTGGCCTTCGAGTGCCAGTCCCTCCCTGCGGC...CAAAGCACAAACAGTGAGGTGCCTCCTACTGCCCTGGTCAGGGTGCAGGGCCAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR TCA 90 bp TACTCTTGGCCTCCCAGGGCTAGGGACCATAGCCTTTCACCTTGTAGATGCCCACGCCGTCCAGGCGGCTaGGGCGGTTGGAGGAGAGGT +
Preference number: 4 (lower is better)
Translates to: YSWPPRARDHSLSPCRCPRRPGG*GGWRRG
Trigger: ACCTCTCCTCCAACCGCCTCAGCCGCCTGGACGGCG...TGGGCATCTACAAGGTGAAAGGCTATGGTCCCTAGCCCTGGGAGGCCAAGAGTA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR TCA 90 bp GGCACACAGGCAGGGGGCAGAACTGCCCAGTACAGCTGTCCCAATGCCCCACAGGGTCACACTCACAGTTaGAGGGGTTGCCAGCCAGCT +
Preference number: 4 (lower is better)
Translates to: GTQAGGRTAQYSCPNAPQGHTHS*RGCQPA
Trigger: AGCTGGCTGGCAACCCCTTCAACTGTGAGTGTGACC...CTGTGGGGCATTGGGACAGCTGTACTGGGCAGTTCTGCCCCCTGCCTGTGTGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR TCA 90 bp GGCACACAGGCAGGGGGCAGAACTGCCCAGTACAGCTGTCCCAATGCCCCACAGCAGCTTCTGCTGGGCTaGGACCCCCTTCCAGTAATC +
Preference number: 4 (lower is better)
Translates to: GTQAGGRTAQYSCPNAPQQLLLG*DPLPVI
Trigger: GATTACTGGAAGGGGGTCTCAGCCCAGCAGAAGCTG...CTGTGGGGCATTGGGACAGCTGTACTGGGCAGTTCTGCCCCCTGCCTGTGTGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR GCA 90 bp TCTTTTCCTCTCTCTGGGCCATCCGTAGTGGGAGGAGAGGATGCCCAATGTCCACACGCACAGCAGCGCTaGCGCACACAGCCCCAGGCG +
Preference number: 4 (lower is better)
Translates to: SFPLSGPSVVGGEDAQCPHAQQR*RTQPQA
Trigger: CGCCTGGGGCTGTGTGCGGCAGCGCTGCTGTGCGTG...TGGACATTGGGCATCCTCTCCTCCCACTACGGATGGCCCAGAGAGAGGAAAAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR GCA 90 bp CTCCTGGGCAGGCCGAGATGCTGCACACAGCAGGAGCCAGACAAGTGGGGTGCACTCGCCCAGCTTCTGTaGAGCGTGCACTATGGAACC +
Preference number: 4 (lower is better)
Translates to: LLGRPRCCTQQEPDKWGALAQLL*SVHYGT
Trigger: GGTTCCATAGTGCACGCTGCACAGAAGCTGGGCGAG...TGCACCCCACTTGTCTGGCTCCTGCTGTGTGCAGCATCTCGGCCTGCCCAGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR GCA 90 bp CAGAACTGCCCAGTACAGCTGTCCCAATGCCCCACAGGCCCACTGCCCACTCAATGTGCCGGTGCTCGCTaGAGTGGTAGGCCGGCTTCA +
Preference number: 4 (lower is better)
Translates to: QNCPVQLSQCPTGPLPTQCAGAR*SGRPAS
Trigger: TGAAGCCGGCCTACCACTGCAGCGAGCACCGGCACA...TTGAGTGGGCAGTGGGCCTGTGGGGCATTGGGACAGCTGTACTGGGCAGTTCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp GTGGGGTGGGGCAGATGCCCTCCTGGGCAGGCCGAGATGCTGCACACAGCAGGAGCCATTTTCGATTTCTaGAAGCTCCTCCTCAGGCCG +
Preference number: 4 (lower is better)
Translates to: VGWGRCPPGQAEMLHTAGAIFDF*KLLLRP
Trigger: CGGCCTGAGGAGGAGCTTCCAGAAATCGAAAATGGC...TCCTGCTGTGTGCAGCATCTCGGCCTGCCCAGGAGGGCATCTGCCCCACCCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp CCCCACATTCTACATCATCTCCACACTGGCCCCAGGCCTTGTCATTCACTGTTGGCGTCGGCGCTCAGCTaGCGCTGCAGCGGGTGGTGG +
Preference number: 4 (lower is better)
Translates to: PHILHHLHTGPRPCHSLLASALS*RCSGWW
Trigger: CCACCACCCGCTGCAGCGCCAGCTGAGCGCCGACGC...CAACAGTGAATGACAAGGCCTGGGGCCAGTGTGGAGATGATGTAGAATGTGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp TCTGTGGTGGGTAGGAGTCCCGGAGACCCAGAGAAACTAGGGGCTGTGGCATGGGGCTTCACCTCCAGGTaGTGGATGCCACCACCCCCA +
Preference number: 4 (lower is better)
Translates to: SVVGRSPGDPEKLGAVAWGFTSR*WMPPPP
Trigger: TGGGGGTGGTGGCATCCACCACCTGGAGGTGAAGCC...CCATGCCACAGCCCCTAGTTTCTCTGGGTCTCCGGGACTCCTACCCACCACAGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR TCA 90 bp CAGAACTGCCCAGTACAGCTGTCCCAATGCCCCACAGGCCCACTGCCCACTCAAGGCAAACTCCCTCGGTaGCTCACACTGCAGGCGATC +
Preference number: 4 (lower is better)
Translates to: QNCPVQLSQCPTGPLPTQGKLPR*LTLQAI
Trigger: GATCGCCTGCAGTGTGAGTCACCGAGGGAGTTTGCC...TTGAGTGGGCAGTGGGCCTGTGGGGCATTGGGACAGCTGTACTGGGCAGTTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR TCA 90 bp GGGCTACTTGGAAGACACTTGAAGGGGGCTGGTGGCACCCTTTGCCTCTGCTTCTCAGGCAGGTGTGGTTaGAGCGGCGGCTGTTGCGCA +
Preference number: 4 (lower is better)
Translates to: GLLGRHLKGAGGTLCLCFSGRCG*SGGCCA
Trigger: TGCGCAACAGCCGCCGCTTCAACCACACCTGCCTGA...GAAGCAGAGGCAAAGGGTGCCACCAGCCCCCTTCAAGTGTCTTCCAAGTAGCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR GCA 90 bp TGCTTGCTCACGCCCCTAGCCTCTCGGCCTGCCTGCTATTCTCAGGGTGGTCAGGTGAAGGTGACTTGGTaGAGCTTGATGGCCGGCCCA +
Preference number: 4 (lower is better)
Translates to: CLLTPLASRPACYSQGGQVKVTW*SLMAGP
Trigger: TGGGCCGGCCATCAAGCTGCACCAAGTCACCTTCAC...CTGACCACCCTGAGAATAGCAGGCAGGCCGAGAGGCTAGGGGCGTGAGCAAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
CDS-3UTR GCA 90 bp GAGACCACAACTTTGGAAGGAGTAGCAGATGAATGGGGGCGGAGCCCAGAGGAGGGTCTTACGGCTCACTaGGGCGTCGGCGCTCAGCTG +
Preference number: 4 (lower is better)
Translates to: ETTTLEGVADEWGRSPEEGLTAH*GVGAQL
Trigger: CAGCTGAGCGCCGACGCCGCAGTGAGCCGTAAGACC...CTCCTCTGGGCTCCGCCCCCATTCATCTGCTACTCCTTCCAAAGTTGTGGTCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp GGGCTACTTGGAAGACACTTGAAGGGGGCTGGTGGCACCCTTTGCCTCTGCTTCCAGCAGATGCATCTGTaGTGGAGGAGGCGGGCGGCT +
Preference number: 4 (lower is better)
Translates to: GLLGRHLKGAGGTLCLCFQQMHL*WRRRAA
Trigger: AGCCGCCCGCCTCCTCCACCACAGATGCATCTGCTG...GAAGCAGAGGCAAAGGGTGCCACCAGCCCCCTTCAAGTGTCTTCCAAGTAGCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp CCCCATACCCTACCCCCAAGGATAGCCCTAGCTTTCCTGGTCAGAGCCCTCACCTGTAGTGCGTGGTGGTaGAGGTGCTGGGGGCCAGAT +
Preference number: 4 (lower is better)
Translates to: PHTLPPRIALAFLVRALTCSAWW*RCWGPD
Trigger: ATCTGGCCCCCAGCACCTCCACCACCACGCACTACA...GGTGAGGGCTCTGACCAGGAAAGCTAGGGCTATCCTTGGGGGTAGGGTATGGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp AGGAGGGGGCAAGTTCCGTACACAGCGAGGGGTCACAGGTTCAGAGTCCAGGGCGTGCAGCGTGCACTATaGAACCGGCATCCACGTCAG +
Preference number: 4 (lower is better)
Translates to: RRGQVPYTARGHRFRVQGVQRAL*NRHPRQ
Trigger: CTGACGTGGATGCCGGTTCCATAGTGCACGCTGCAC...GCCCTGGACTCTGAACCTGTGACCCCTCGCTGTGTACGGAACTTGCCCCCTCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp CCTACACCTGAGATACCAGTGGGGAGCAGGTCTACCCACCACCCCACACCCAGGCAGCCTCCAGACCCTTaGAGGCAGGCAGTTTCTCTC +
Preference number: 4 (lower is better)
Translates to: PTPEIPVGSRSTHHPTPRQPPDP*RQAVSL
Trigger: GAGAGAAACTGCCTGCCTCCAAGGGTCTGGAGGCTG...CCTGGGTGTGGGGTGGTGGGTAGACCTGCTCCCCACTGGTATCTCAGGTGTAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp AGGAGGGGGCAAGTTCCGTACACAGCGAGGGGTCACAGGTTCAGAGTCCAGGGCCCTCCTTGGCAATGGTaGAGATCTCAGCCGCTGAGC +
Preference number: 4 (lower is better)
Translates to: RRGQVPYTARGHRFRVQGPPWQW*RSQPLS
Trigger: GCTCAGCGGCTGAGATCTCCACCATTGCCAAGGAGG...GCCCTGGACTCTGAACCTGTGACCCCTCGCTGTGTACGGAACTTGCCCCCTCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
CDS-3UTR TCA 90 bp GGCACACAGGCAGGGGGCAGAACTGCCCAGTACAGCTGTCCCAATGCCCCACAGGGATCTCGTCAGGATTaGAGCCTGAGTTCTCGTCAG +
Preference number: 4 (lower is better)
Translates to: GTQAGGRTAQYSCPNAPQGSRQD*SLSSRQ
Trigger: CTGACGAGAACTCAGGCTTCAATCCTGACGAGATCC...CTGTGGGGCATTGGGACAGCTGTACTGGGCAGTTCTGCCCCCTGCCTGTGTGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR TCA 90 bp TGTCCCAATGCCCCACAGGCCCACTGCCCACTCAAAGGCAAAGGACAATGCCTTTCAGGCAGGTGTGGTTaGAGCGGCGGCTGTTGCGCA +
Preference number: 4 (lower is better)
Translates to: CPNAPQAHCPLKGKGQCLSGRCG*SGGCCA
Trigger: TGCGCAACAGCCGCCGCTTCAACCACACCTGCCTGA...AAGGCATTGTCCTTTGCCTTTGAGTGGGCAGTGGGCCTGTGGGGCATTGGGACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR TCA 90 bp TGTCCCAATGCCCCACAGGCCCACTGCCCACTCAAAGGCAAAGGACAATGCCTTCAGCCCCCAGCACGATaGCCATGCCAAACAGGCAGC +
Preference number: 4 (lower is better)
Translates to: CPNAPQAHCPLKGKGQCLQPPAR*PCQTGS
Trigger: GCTGCCTGTTTGGCATGGTCATCGTGCTGGGGGCTG...AAGGCATTGTCCTTTGCCTTTGAGTGGGCAGTGGGCCTGTGGGGCATTGGGACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR TCA 90 bp CCCCATACCCTACCCCCAAGGATAGCCCTAGCTTTCCTGGTCAGAGCCCTCACCAGACCTTGGCGCTCTTaGTGGAGCCACTGGACGACA +
Preference number: 4 (lower is better)
Translates to: PHTLPPRIALAFLVRALTRPWRS*WSHWTT
Trigger: TGTCGTCCAGTGGCTCCATCAAGAGCGCCAAGGTCT...GGTGAGGGCTCTGACCAGGAAAGCTAGGGCTATCCTTGGGGGTAGGGTATGGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR GCA 90 bp TCTTTTCCTCTCTCTGGGCCATCCGTAGTGGGAGGAGAGGATGCCCAATGTCCACCTCCAGGTGGTGGATaGCACCACCCCCACCACTGC +
Preference number: 4 (lower is better)
Translates to: SFPLSGPSVVGGEDAQCPPPGGG*HHPHHC
Trigger: GCAGTGGTGGGGGTGGTGGCATCCACCACCTGGAGG...TGGACATTGGGCATCCTCTCCTCCCACTACGGATGGCCCAGAGAGAGGAAAAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp GAAGGCCACACGCTCCCACAAACGGGACCTCACAGGCTGTTCTCTAACAGGTCACAGATGCATCTGTGGTaGAGGAGGCGGGCGGCTCCA +
Preference number: 4 (lower is better)
Translates to: EGHTLPQTGPHRLFSNRSQMHLW*RRRAAP
Trigger: TGGAGCCGCCCGCCTCCTCCACCACAGATGCATCTG...TGACCTGTTAGAGAACAGCCTGTGAGGTCCCGTTTGTGGGAGCGTGTGGCCTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp CAGAACTGCCCAGTACAGCTGTCCCAATGCCCCACAGGCCCACTGCCCACTCAACAGCCTCCAGACCCTTaGAGGCAGGCAGTTTCTCTC +
Preference number: 4 (lower is better)
Translates to: QNCPVQLSQCPTGPLPTQQPPDP*RQAVSL
Trigger: GAGAGAAACTGCCTGCCTCCAAGGGTCTGGAGGCTG...TTGAGTGGGCAGTGGGCCTGTGGGGCATTGGGACAGCTGTACTGGGCAGTTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp AAGGGGCACACAGGCAGGGGGCAGAACTGCCCAGTACAGCTGTCCCAATGCCCCGCCATTTTCGATTTCTaGAAGCTCCTCCTCAGGCCG +
Preference number: 4 (lower is better)
Translates to: KGHTGRGQNCPVQLSQCPAIFDF*KLLLRP
Trigger: CGGCCTGAGGAGGAGCTTCCAGAAATCGAAAATGGC...GGGGCATTGGGACAGCTGTACTGGGCAGTTCTGCCCCCTGCCTGTGTGCCCCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp TCACCTCCTACCCACATGTCTCCCAGGTTGACTCCATTAAGGCCCTGGGATCCTGCCGCAGGGAGGGACTaGCACTCGAAGGCCAGATCG +
Preference number: 4 (lower is better)
Translates to: SPPTHMSPRLTPLRPWDPAAGRD*HSKARS
Trigger: CGATCTGGCCTTCGAGTGCCAGTCCCTCCCTGCGGC...AGGATCCCAGGGCCTTAATGGAGTCAACCTGGGAGACATGTGGGTAGGAGGTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR CAA 72 bp GCCCAGTTGTCACCTCCTACCCACATGTCTCCCAGGTaGACTCCATTAAGGCCCTGGGATCCTCCCTGTGCC +
Preference number: 4 (lower is better)
Translates to: AQLSPPTHMSPR*TPLRPWDPPCA
Trigger: GGCACAGGGAGGATCCCAGGGCCTTAATGGAGTCAACCTGGGAGACATGTGGGTAGGAGGTGACAACTGGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
CDS-3UTR TCA 90 bp GGGCTACTTGGAAGACACTTGAAGGGGGCTGGTGGCACCCTTTGCCTCTGCTTCGCGTCACCACCTCGATaGGGTTGTGCTGGACGAAGA +
Preference number: 4 (lower is better)
Translates to: GLLGRHLKGAGGTLCLCFASPPR*GCAGRR
Trigger: TCTTCGTCCAGCACAACCTCATCGAGGTGGTGACGC...GAAGCAGAGGCAAAGGGTGCCACCAGCCCCCTTCAAGTGTCTTCCAAGTAGCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR GCA 90 bp GCCTCTCGCCCACCATCCTCCTCACTCAAGAGTCACAAATCTCTTATCTCATGTGCGTGGTGGTGGAGGTaGTGGGGGCCAGATCCCCGG +
Preference number: 4 (lower is better)
Translates to: ASRPPSSSLKSHKSLISCAWWWR*WGPDPR
Trigger: CCGGGGATCTGGCCCCCAGCACCTCCACCACCACGC...ACATGAGATAAGAGATTTGTGACTCTTGAGTGAGGAGGATGGTGGGCGAGAGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR GCA 90 bp GGGCTACTTGGAAGACACTTGAAGGGGGCTGGTGGCACCCTTTGCCTCTGCTTCTTCTGCTTCTCCTCTTaGATGCGCCGCTTCCGCAGG +
Preference number: 4 (lower is better)
Translates to: GLLGRHLKGAGGTLCLCFFCFSS*MRRFRR
Trigger: CCTGCGGAAGCGGCGCATGCAAGAGGAGAAGCAGAA...GAAGCAGAGGCAAAGGGTGCCACCAGCCCCCTTCAAGTGTCTTCCAAGTAGCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp CTGGGGGACCTGCCCAATGGAGGTACCTATGTCTTAGATCATTGCTCTGTCTCACACGGGCAGCACCGGTaGCTCGCCCAGCTTCTGTGC +
Preference number: 4 (lower is better)
Translates to: LGDLPNGGTYVLDHCSVSHGQHR*LAQLLC
Trigger: GCACAGAAGCTGGGCGAGCCACCGGTGCTGCCCGTG...TGAGACAGAGCAATGATCTAAGACATAGGTACCTCCATTGGGCAGGTCCCCCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
CDS-3UTR TCA 90 bp AAGGCTCCTCCCTATCTCAATGGGAAGCTAAGGGGCACACAGGCAGGGGGCAGATGTTGCGCAGCGAGGTaGCACAGAAGGTGTACTCAG +
Preference number: 4 (lower is better)
Translates to: KAPPYLNGKLRGTQAGGRCCAAR*HRRCTQ
Trigger: CTGAGTACACCTTCTGTGTCACCTCGCTGCGCAACA...TCTGCCCCCTGCCTGTGTGCCCCTTAGCTTCCCATTGAGATAGGGAGGAGCCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR TCA 90 bp TGTCCCAATGCCCCACAGGCCCACTGCCCACTCAAAGGCAAAGGACAATGCCTTCAGCTTCTGCTGGGCTaGGACCCCCTTCCAGTAATC +
Preference number: 4 (lower is better)
Translates to: CPNAPQAHCPLKGKGQCLQLLLG*DPLPVI
Trigger: GATTACTGGAAGGGGGTCTCAGCCCAGCAGAAGCTG...AAGGCATTGTCCTTTGCCTTTGAGTGGGCAGTGGGCCTGTGGGGCATTGGGACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR GCA 90 bp AAGGCTCCTCCCTATCTCAATGGGAAGCTAAGGGGCACACAGGCAGGGGGCAGATTGCGGCACTTGGCCTaGAGGACAGTGATGGCATTG +
Preference number: 4 (lower is better)
Translates to: KAPPYLNGKLRGTQAGGRLRHLA*RTVMAL
Trigger: CAATGCCATCACTGTCCTGCAGGCCAAGTGCCGCAA...TCTGCCCCCTGCCTGTGTGCCCCTTAGCTTCCCATTGAGATAGGGAGGAGCCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR GCA 90 bp CAGAACTGCCCAGTACAGCTGTCCCAATGCCCCACAGGCCCACTGCCCACTCAAAAGGTGTACTCAGTGTaGGCTCGCAGCTTGTCCAAC +
Preference number: 4 (lower is better)
Translates to: QNCPVQLSQCPTGPLPTQKVYSV*ARSLSN
Trigger: GTTGGACAAGCTGCGAGCGCACACTGAGTACACCTT...TTGAGTGGGCAGTGGGCCTGTGGGGCATTGGGACAGCTGTACTGGGCAGTTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR GCA 90 bp GAAGGCCACACGCTCCCACAAACGGGACCTCACAGGCTGTTCTCTAACAGGTCATTCTGCTTCTCCTCTTaGATGCGCCGCTTCCGCAGG +
Preference number: 4 (lower is better)
Translates to: EGHTLPQTGPHRLFSNRSFCFSS*MRRFRR
Trigger: CCTGCGGAAGCGGCGCATGCAAGAGGAGAAGCAGAA...TGACCTGTTAGAGAACAGCCTGTGAGGTCCCGTTTGTGGGAGCGTGTGGCCTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
CDS-3UTR GCA 90 bp CCCCACATTCTACATCATCTCCACACTGGCCCCAGGCCTTGTCATTCACTGTTGGGCCAGGCTGTCTCCTaGAGCACCTGTGCGCACTTC +
Preference number: 4 (lower is better)
Translates to: PHILHHLHTGPRPCHSLLGQAVS*STCAHF
Trigger: GAAGTGCGCACAGGTGCTGCAGGAGACAGCCTGGCC...CAACAGTGAATGACAAGGCCTGGGGCCAGTGTGGAGATGATGTAGAATGTGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp ATCCCCACATTCTACATCATCTCCACACTGGCCCCAGGCCTTGTCATTCACTGTCGCACACCATCAGGCTaGCCAGGCTGGCGAAGGTCG +
Preference number: 4 (lower is better)
Translates to: IPTFYIISTLAPGLVIHCRTPSG*PGWRRS
Trigger: CGACCTTCGCCAGCCTGGCCAGCCTGATGGTGTGCG...ACAGTGAATGACAAGGCCTGGGGCCAGTGTGGAGATGATGTAGAATGTGGGGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp TGTCCCAATGCCCCACAGGCCCACTGCCCACTCAAAGGCAAAGGACAATGCCTTAAGGTCAGGCAGGTGTaGTTGAAGCGGCGGCTGTTG +
Preference number: 4 (lower is better)
Translates to: CPNAPQAHCPLKGKGQCLKVRQV*LKRRLL
Trigger: CAACAGCCGCCGCTTCAACCACACCTGCCTGACCTT...AAGGCATTGTCCTTTGCCTTTGAGTGGGCAGTGGGCCTGTGGGGCATTGGGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp AAGGCTCCTCCCTATCTCAATGGGAAGCTAAGGGGCACACAGGCAGGGGGCAGAACGAGTACTCGGGGCTaGAGGAGTACCCTGAGTAGT +
Preference number: 4 (lower is better)
Translates to: KAPPYLNGKLRGTQAGGRTSTRG*RSTLSS
Trigger: ACTACTCAGGGTACTCCTCCAGCCCCGAGTACTCGT...TCTGCCCCCTGCCTGTGTGCCCCTTAGCTTCCCATTGAGATAGGGAGGAGCCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR CAA 72 bp GGACAATGCCTTAGCCTAGTCTCGGGACTCCAGAGCTaGTCCCCAGAAGCTCTTGGCTCTCGAGAGAGCTGC +
Preference number: 4 (lower is better)
Translates to: GQCLSLVSGLQS*SPEALGSRESC
Trigger: GCAGCTCTCTCGAGAGCCAAGAGCTTCTGGGGACAAGCTCTGGAGTCCCGAGACTAGGCTAAGGCATTGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR TCA 90 bp AAGGCTCCTCCCTATCTCAATGGGAAGCTAAGGGGCACACAGGCAGGGGGCAGACATGCACAGTGCTGTTaGTGTGCTGAGGGATGGTCT +
Preference number: 4 (lower is better)
Translates to: KAPPYLNGKLRGTQAGGRHAQCC*CAEGWS
Trigger: AGACCATCCCTCAGCACATCAACAGCACTGTGCATG...TCTGCCCCCTGCCTGTGTGCCCCTTAGCTTCCCATTGAGATAGGGAGGAGCCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR TCA 90 bp ATTGGGTGTTGGTTACTTCACAGTCAGGTGGTGGTCAAGTGTGTGTGTGTGGGTCGAGGTCCCGCGTGGTaGAGGTCAGGCAGGTGTGGT +
Preference number: 4 (lower is better)
Translates to: IGCWLLHSQVVVKCVCVGRGPAW*RSGRCG
Trigger: ACCACACCTGCCTGACCTTCACCACGCGGGACCTCG...ACCCACACACACACACTTGACCACCACCTGACTGTGAAGTAACCAACACCCAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR GCA 90 bp TACTCTTGGCCTCCCAGGGCTAGGGACCATAGCCTTTCACCTTGTAGATGCCCATGGACGAAGAGGAACTaGAGGCGGCTCATACCTCGC +
Preference number: 4 (lower is better)
Translates to: YSWPPRARDHSLSPCRCPWTKRN*RRLIPR
Trigger: GCGAGGTATGAGCCGCCTGCAGTTCCTCTTCGTCCA...TGGGCATCTACAAGGTGAAAGGCTATGGTCCCTAGCCCTGGGAGGCCAAGAGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp CTGGGGGACCTGCCCAATGGAGGTACCTATGTCTTAGATCATTGCTCTGTCTCAGGCTTCACCTCCAGGTaGTGGATGCCACCACCCCCA +
Preference number: 4 (lower is better)
Translates to: LGDLPNGGTYVLDHCSVSGFTSR*WMPPPP
Trigger: TGGGGGTGGTGGCATCCACCACCTGGAGGTGAAGCC...TGAGACAGAGCAATGATCTAAGACATAGGTACCTCCATTGGGCAGGTCCCCCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
3UTR CAA 72 bp TCTCTGGCCTCTTTCCCCAGCCCAGCAAGAAGTCCCTaGGGCAGCACAGTAGAGACAACTGGTGTCAGTAGC +
Preference number: 4 (lower is better)
Translates to: SLASFPSPARSP*GSTVETTGVSS
Trigger: GCTACTGACACCAGTTGTCTCTACTGTGCTGCCCAAGGGACTTCTTGCTGGGCTGGGGAAAGAGGCCAGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR TCA 90 bp TGTTCCCAAGCTTGGAGGATAGCCTCTCTGAACAAGAGGCCTGTGGTTGACCTCGGTCACACTCACAGTTaGAGGGGTTGCCAGCCAGCT +
Preference number: 4 (lower is better)
Translates to: CSQAWRIASLNKRPVVDLGHTHS*RGCQPA
Trigger: AGCTGGCTGGCAACCCCTTCAACTGTGAGTGTGACC...GAGGTCAACCACAGGCCTCTTGTTCAGAGAGGCTATCCTCCAAGCTTGGGAACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR TCA 90 bp GGGCTACTTGGAAGACACTTGAAGGGGGCTGGTGGCACCCTTTGCCTCTGCTTCAGGCTGAATCCAGCTTaGGGGCATCGATGCAATTGT +
Preference number: 4 (lower is better)
Translates to: GLLGRHLKGAGGTLCLCFRLNPA*GHRCNC
Trigger: ACAATTGCATCGATGCCCTCAAGCTGGATTCAGCCT...GAAGCAGAGGCAAAGGGTGCCACCAGCCCCCTTCAAGTGTCTTCCAAGTAGCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR GCA 90 bp AATGTCAGGGGGTTTCACTTGGCTCCAGGGTATAAGAATCCATTTGGCATTTTGGCGTGGTGGTGGAGGTaGTGGGGGCCAGATCCCCGG +
Preference number: 4 (lower is better)
Translates to: NVRGFHLAPGYKNPFGILAWWWR*WGPDPR
Trigger: CCGGGGATCTGGCCCCCAGCACCTCCACCACCACGC...CAAAATGCCAAATGGATTCTTATACCCTGGAGCCAAGTGAAACCCCCTGACATT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp CCCCACATTCTACATCATCTCCACACTGGCCCCAGGCCTTGTCATTCACTGTTGGTGCAGCGTGCACTATaGAACCGGCATCCACGTCAG +
Preference number: 4 (lower is better)
Translates to: PHILHHLHTGPRPCHSLLVQRAL*NRHPRQ
Trigger: CTGACGTGGATGCCGGTTCCATAGTGCACGCTGCAC...CAACAGTGAATGACAAGGCCTGGGGCCAGTGTGGAGATGATGTAGAATGTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp TCTTTTCCTCTCTCTGGGCCATCCGTAGTGGGAGGAGAGGATGCCCAATGTCCACTTAGAGCGGGTCAGTaGCTTGAGGAAGGACACACG +
Preference number: 4 (lower is better)
Translates to: SFPLSGPSVVGGEDAQCPLRAGQ*LEEGHT
Trigger: CGTGTGTCCTTCCTCAAGCCACTGACCCGCTCTAAG...TGGACATTGGGCATCCTCTCCTCCCACTACGGATGGCCCAGAGAGAGGAAAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR CAA 72 bp GGACCTGCCCAATGGAGGTACCTATGTCTTAGATCATaGCTCTGTCTCAAAGGTCCCTGTGGCCTGGTCCCC +
Preference number: 4 (lower is better)
Translates to: GPAQWRYLCLRS*LCLKGPCGLVP
Trigger: GGGGACCAGGCCACAGGGACCTTTGAGACAGAGCAATGATCTAAGACATAGGTACCTCCATTGGGCAGGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
CDS-3UTR TCA 90 bp TGTTCCCAAGCTTGGAGGATAGCCTCTCTGAACAAGAGGCCTGTGGTTGACCTCCCCAAGGAAAGAGGCTaGATCCAGCTTGAGGGCATC +
Preference number: 4 (lower is better)
Translates to: CSQAWRIASLNKRPVVDLPKERG*IQLEGI
Trigger: GATGCCCTCAAGCTGGATTCAGCCTCTTTCCTTGGG...GAGGTCAACCACAGGCCTCTTGTTCAGAGAGGCTATCCTCCAAGCTTGGGAACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR GCA 90 bp TCACCTCCTACCCACATGTCTCCCAGGTTGACTCCATTAAGGCCCTGGGATCCTAAGGTGTACTCAGTGTaGGCTCGCAGCTTGTCCAAC +
Preference number: 4 (lower is better)
Translates to: SPPTHMSPRLTPLRPWDPKVYSV*ARSLSN
Trigger: GTTGGACAAGCTGCGAGCGCACACTGAGTACACCTT...AGGATCCCAGGGCCTTAATGGAGTCAACCTGGGAGACATGTGGGTAGGAGGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp ATTGGGTGTTGGTTACTTCACAGTCAGGTGGTGGTCAAGTGTGTGTGTGTGGGTGGCTGTGGTAAGGTCTaGGCACGAGCAGCGGGTAAC +
Preference number: 4 (lower is better)
Translates to: IGCWLLHSQVVVKCVCVGGCGKV*ARAAGN
Trigger: GTTACCCGCTGCTCGTGCCCAGACCTTACCACAGCC...ACCCACACACACACACTTGACCACCACCTGACTGTGAAGTAACCAACACCCAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp CCCCACATTCTACATCATCTCCACACTGGCCCCAGGCCTTGTCATTCACTGTTGACGAGTACTCGGGGCTaGAGGAGTACCCTGAGTAGT +
Preference number: 4 (lower is better)
Translates to: PHILHHLHTGPRPCHSLLTSTRG*RSTLSS
Trigger: ACTACTCAGGGTACTCCTCCAGCCCCGAGTACTCGT...CAACAGTGAATGACAAGGCCTGGGGCCAGTGTGGAGATGATGTAGAATGTGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR CAA 72 bp CCACATTCTACATCATCTCCACACTGGCCCCAGGCCTaGTCATTCACTGTTGCCTCTCTGTGGTGGGTAGGA +
Preference number: 4 (lower is better)
Translates to: PHSTSSPHWPQA*SFTVASLWWVG
Trigger: TCCTACCCACCACAGAGAGGCAACAGTGAATGACAAGGCCTGGGGCCAGTGTGGAGATGATGTAGAATGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR TCA 90 bp CCCCACATTCTACATCATCTCCACACTGGCCCCAGGCCTTGTCATTCACTGTTGGGATCTCGTCAGGATTaGAGCCTGAGTTCTCGTCAG +
Preference number: 4 (lower is better)
Translates to: PHILHHLHTGPRPCHSLLGSRQD*SLSSRQ
Trigger: CTGACGAGAACTCAGGCTTCAATCCTGACGAGATCC...CAACAGTGAATGACAAGGCCTGGGGCCAGTGTGGAGATGATGTAGAATGTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR GCA 90 bp AATGTCAGGGGGTTTCACTTGGCTCCAGGGTATAAGAATCCATTTGGCATTTTGGGTCTTACGGCTCACTaGGGCGTCGGCGCTCAGCTG +
Preference number: 4 (lower is better)
Translates to: NVRGFHLAPGYKNPFGILGLTAH*GVGAQL
Trigger: CAGCTGAGCGCCGACGCCGCAGTGAGCCGTAAGACC...CAAAATGCCAAATGGATTCTTATACCCTGGAGCCAAGTGAAACCCCCTGACATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
CDS-3UTR GCA 90 bp GCCTCTCGCCCACCATCCTCCTCACTCAAGAGTCACAAATCTCTTATCTCATGTCACTGGACGACACGCTaGAGGTCTTACGGCTCACTG +
Preference number: 4 (lower is better)
Translates to: ASRPPSSSLKSHKSLISCHWTTR*RSYGSL
Trigger: CAGTGAGCCGTAAGACCTGCAGCGTGTCGTCCAGTG...ACATGAGATAAGAGATTTGTGACTCTTGAGTGAGGAGGATGGTGGGCGAGAGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR CAA 72 bp CATGTTGCCACGTCTCCAAGGGAAATGTTCCCAAGCTaGGAGGATAGCCTCTCTGAACAAGAGGCCTGTGGT +
Preference number: 4 (lower is better)
Translates to: HVATSPREMFPS*EDSLSEQEACG
Trigger: ACCACAGGCCTCTTGTTCAGAGAGGCTATCCTCCAAGCTTGGGAACATTTCCCTTGGAGACGTGGCAACATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR GCA 90 bp GAAAATGTTTGTTTTCCTGTCCGCTATTATTGGGTGTTGGTTACTTCACAGTCACACGCACAGCAGCGCTaGCGCACACAGCCCCAGGCG +
Preference number: 4 (lower is better)
Translates to: ENVCFPVRYYWVLVTSQSHAQQR*RTQPQA
Trigger: CGCCTGGGGCTGTGTGCGGCAGCGCTGCTGTGCGTG...TGACTGTGAAGTAACCAACACCCAATAATAGCGGACAGGAAAACAAACATTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR GCA 90 bp GAAAATGTTTGTTTTCCTGTCCGCTATTATTGGGTGTTGGTTACTTCACAGTCACACCACCCCCACCACTaGTCCCGCTGCTGCCCGTGG +
Preference number: 4 (lower is better)
Translates to: ENVCFPVRYYWVLVTSQSHHPHH*SRCCPW
Trigger: CCACGGGCAGCAGCGGGAGCAGTGGTGGGGGTGGTG...TGACTGTGAAGTAACCAACACCCAATAATAGCGGACAGGAAAACAAACATTTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp CTATTATTGGGTGTTGGTTACTTCACAGTCAGGTGGTGGTCAAGTGTGTGTGTGTTCACCTCCAGGTGGTaGATGCCACCACCCCCACCA +
Preference number: 4 (lower is better)
Translates to: LLLGVGYFTVRWWSSVCVFTSRW*MPPPPP
Trigger: TGGTGGGGGTGGTGGCATCCACCACCTGGAGGTGAA...CACACACACACTTGACCACCACCTGACTGTGAAGTAACCAACACCCAATAATAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp GTAAACTTTAAGGAAAATGTTTGTTTTCCTGTCCGCTATTATTGGGTGTTGGTTGGGGTGACAGGAAGCTaGGCCGCTCCAGCGCCCCGG +
Preference number: 4 (lower is better)
Translates to: VNFKENVCFPVRYYWVLVGVTGS*AAPAPR
Trigger: CCGGGGCGCTGGAGCGGCCCAGCTTCCTGTCACCCC...AACCAACACCCAATAATAGCGGACAGGAAAACAAACATTTTCCTTAAAGTTTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR TCA 90 bp ATTGGGTGTTGGTTACTTCACAGTCAGGTGGTGGTCAAGTGTGTGTGTGTGGGTAGGCTGAATCCAGCTTaGGGGCATCGATGCAATTGT +
Preference number: 4 (lower is better)
Translates to: IGCWLLHSQVVVKCVCVGRLNPA*GHRCNC
Trigger: ACAATTGCATCGATGCCCTCAAGCTGGATTCAGCCT...ACCCACACACACACACTTGACCACCACCTGACTGTGAAGTAACCAACACCCAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR GCA 90 bp CTATTATTGGGTGTTGGTTACTTCACAGTCAGGTGGTGGTCAAGTGTGTGTGTGTTGCGGCACTTGGCCTaGAGGACAGTGATGGCATTG +
Preference number: 4 (lower is better)
Translates to: LLLGVGYFTVRWWSSVCVLRHLA*RTVMAL
Trigger: CAATGCCATCACTGTCCTGCAGGCCAAGTGCCGCAA...CACACACACACTTGACCACCACCTGACTGTGAAGTAACCAACACCCAATAATAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR GCA 90 bp ACTTGGCTCCAGGGTATAAGAATCCATTTGGCATTTTGTGACAATTGTACTTCTCCTCCAGGTGGTGGATaGCACCACCCCCACCACTGC +
Preference number: 4 (lower is better)
Translates to: TWLQGIRIHLAFCDNCTSPPGGG*HHPHHC
Trigger: GCAGTGGTGGGGGTGGTGGCATCCACCACCTGGAGG...AGAAGTACAATTGTCACAAAATGCCAAATGGATTCTTATACCCTGGAGCCAAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp GAAAATGTTTGTTTTCCTGTCCGCTATTATTGGGTGTTGGTTACTTCACAGTCAAGGAAGGACACACGCTaGCTCAGGCTGTCGGCGCCC +
Preference number: 4 (lower is better)
Translates to: ENVCFPVRYYWVLVTSQSRKDTR*LRLSAP
Trigger: GGGCGCCGACAGCCTGAGCCAGCGTGTGTCCTTCCT...TGACTGTGAAGTAACCAACACCCAATAATAGCGGACAGGAAAACAAACATTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR CAA 72 bp CGACTCAGCCCAGAACTCAATGTCAGGGGGTTTCACTaGGCTCCAGGGTATAAGAATCCATTTGGCATTTTG +
Preference number: 4 (lower is better)
Translates to: RLSPELNVRGFH*APGYKNPFGIL
Trigger: CAAAATGCCAAATGGATTCTTATACCCTGGAGCCAAGTGAAACCCCCTGACATTGAGTTCTGGGCTGAGTCG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
CDS-3UTR GCA 90 bp GTAAACTTTAAGGAAAATGTTTGTTTTCCTGTCCGCTATTATTGGGTGTTGGTTGGCCGGCCCAGCAGATaGATCTGTGGTGGAGGAGGC +
Preference number: 4 (lower is better)
Translates to: VNFKENVCFPVRYYWVLVGRPSR*ICGGGG
Trigger: GCCTCCTCCACCACAGATGCATCTGCTGGGCCGGCC...AACCAACACCCAATAATAGCGGACAGGAAAACAAACATTTTCCTTAAAGTTTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp GAAAATGTTTGTTTTCCTGTCCGCTATTATTGGGTGTTGGTTACTTCACAGTCATTCACCTCCAGGTGGTaGATGCCACCACCCCCACCA +
Preference number: 4 (lower is better)
Translates to: ENVCFPVRYYWVLVTSQSFTSRW*MPPPPP
Trigger: TGGTGGGGGTGGTGGCATCCACCACCTGGAGGTGAA...TGACTGTGAAGTAACCAACACCCAATAATAGCGGACAGGAAAACAAACATTTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR TCA 90 bp GAAAATGTTTGTTTTCCTGTCCGCTATTATTGGGTGTTGGTTACTTCACAGTCAGCGTCACCACCTCGATaGGGTTGTGCTGGACGAAGA +
Preference number: 4 (lower is better)
Translates to: ENVCFPVRYYWVLVTSQSASPPR*GCAGRR
Trigger: TCTTCGTCCAGCACAACCTCATCGAGGTGGTGACGC...TGACTGTGAAGTAACCAACACCCAATAATAGCGGACAGGAAAACAAACATTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR GCA 90 bp GAAAATGTTTGTTTTCCTGTCCGCTATTATTGGGTGTTGGTTACTTCACAGTCACTCGCCCAGCTTCTGTaGAGCGTGCACTATGGAACC +
Preference number: 4 (lower is better)
Translates to: ENVCFPVRYYWVLVTSQSLAQLL*SVHYGT
Trigger: GGTTCCATAGTGCACGCTGCACAGAAGCTGGGCGAG...TGACTGTGAAGTAACCAACACCCAATAATAGCGGACAGGAAAACAAACATTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR GCA 90 bp GAAAATGTTTGTTTTCCTGTCCGCTATTATTGGGTGTTGGTTACTTCACAGTCACACTGGACGACACGCTaGAGGTCTTACGGCTCACTG +
Preference number: 4 (lower is better)
Translates to: ENVCFPVRYYWVLVTSQSHWTTR*RSYGSL
Trigger: CAGTGAGCCGTAAGACCTGCAGCGTGTCGTCCAGTG...TGACTGTGAAGTAACCAACACCCAATAATAGCGGACAGGAAAACAAACATTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp GAAAATGTTTGTTTTCCTGTCCGCTATTATTGGGTGTTGGTTACTTCACAGTCAGAGGTGAAGGTGACTTaGTGCAGCTTGATGGCCGGC +
Preference number: 4 (lower is better)
Translates to: ENVCFPVRYYWVLVTSQSEVKVT*CSLMAG
Trigger: GCCGGCCATCAAGCTGCACCAAGTCACCTTCACCTC...TGACTGTGAAGTAACCAACACCCAATAATAGCGGACAGGAAAACAAACATTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR TCA 90 bp GAAAATGTTTGTTTTCCTGTCCGCTATTATTGGGTGTTGGTTACTTCACAGTCATGTTGCGCAGCGAGGTaGCACAGAAGGTGTACTCAG +
Preference number: 4 (lower is better)
Translates to: ENVCFPVRYYWVLVTSQSCCAAR*HRRCTQ
Trigger: CTGAGTACACCTTCTGTGTCACCTCGCTGCGCAACA...TGACTGTGAAGTAACCAACACCCAATAATAGCGGACAGGAAAACAAACATTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR TCA 90 bp GAAAATGTTTGTTTTCCTGTCCGCTATTATTGGGTGTTGGTTACTTCACAGTCACATGCACAGTGCTGTTaGTGTGCTGAGGGATGGTCT +
Preference number: 4 (lower is better)
Translates to: ENVCFPVRYYWVLVTSQSHAQCC*CAEGWS
Trigger: AGACCATCCCTCAGCACATCAACAGCACTGTGCATG...TGACTGTGAAGTAACCAACACCCAATAATAGCGGACAGGAAAACAAACATTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR TCA 90 bp GTAAACTTTAAGGAAAATGTTTGTTTTCCTGTCCGCTATTATTGGGTGTTGGTTAGACCTTGGCGCTCTTaGTGGAGCCACTGGACGACA +
Preference number: 4 (lower is better)
Translates to: VNFKENVCFPVRYYWVLVRPWRS*WSHWTT
Trigger: TGTCGTCCAGTGGCTCCATCAAGAGCGCCAAGGTCT...AACCAACACCCAATAATAGCGGACAGGAAAACAAACATTTTCCTTAAAGTTTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CCA 90 bp GTAAACTTTAAGGAAAATGTTTGTTTTCCTGTCCGCTATTATTGGGTGTTGGTTCTTAGAGCGGGTCAGTaGCTTGAGGAAGGACACACG +
Preference number: 4 (lower is better)
Translates to: VNFKENVCFPVRYYWVLVLRAGQ*LEEGHT
Trigger: CGTGTGTCCTTCCTCAAGCCACTGACCCGCTCTAAG...AACCAACACCCAATAATAGCGGACAGGAAAACAAACATTTTCCTTAAAGTTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
3UTR CAA 72 bp GAAAATGTTTGTTTTCCTGTCCGCTATTATTGGGTGTaGGTTACTTCACAGTCAGGTGGTGGTCAAGTGTGT +
Preference number: 4 (lower is better)
Translates to: ENVCFPVRYYWV*VTSQSGGGQVC
Trigger: ACACACTTGACCACCACCTGACTGTGAAGTAACCAACACCCAATAATAGCGGACAGGAAAACAAACATTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CAA 90 bp GCGTGTGCGTCCACTCCTAGGCCCGGGCCCCTCGGCCCCAGGCTCCTTGGCCTGCTGTCCAGCGGGCTGTaGAGGGGGCTGCCTTTCTCA +
Preference number: 5 (lower is better)
Translates to: ACASTPRPGPLGPRLLGLLSSGL*RGLPFS
Trigger: TGAGAAAGGCAGCCCCCTCAACAGCCCGCTGGACAG...CAGGCCAAGGAGCCTGGGGCCGAGGGGCCCGGGCCTAGGAGTGGACGCACACGC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS GCA 90 bp CTTGATGGAGCCACTGGACGACACGCTGCAGGTCTTACGGCTCACTaGGGCGTCGGCGCTCAGCTGGCGCTGCAGCGGGTGGTGGGAGCT +
Preference number: 5 (lower is better)
Translates to: LDGATGRHAAGLTAH*GVGAQLALQRVVGA
Trigger: AGCTCCCACCACCCGCTGCAGCGCCAGCTGAGCGCCGACGCCGCAGTGAGCCGTAAGACCTGCAGCGTGTCGTCCAGTGGCTCCATCAAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CAA 90 bp GCGTGTGCGTCCACTCCTAGGCCCGGGCCCCTCGGCCCCAGGCTCCTTGGCCTGACCACCTCGATGAGGTaGTGCTGGACGAAGAGGAAC +
Preference number: 5 (lower is better)
Translates to: ACASTPRPGPLGPRLLGLTTSMR*CWTKRN
Trigger: GTTCCTCTTCGTCCAGCACAACCTCATCGAGGTGGT...CAGGCCAAGGAGCCTGGGGCCGAGGGGCCCGGGCCTAGGAGTGGACGCACACGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS GCA 90 bp CGCCCTCCTCGTAGTAGAGAGCGGGGAAGCTGTGCCGGTGCTCGCTaGAGTGGTAGGCCGGCTTCACCTCCAGGTGGTGGATGCCACCAC +
Preference number: 5 (lower is better)
Translates to: RPPRSRERGSCAGAR*SGRPASPPGGGCHH
Trigger: GTGGTGGCATCCACCACCTGGAGGTGAAGCCGGCCTACCACTGCAGCGAGCACCGGCACAGCTTCCCCGCTCTCTACTACGAGGAGGGCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CAA 90 bp GTGGGGTGGGGCAGATGCCCTCCTGGGCAGGCCGAGATGCTGCACACAGCAGGAGAGCCGTTGCGGCACTaGGCCTGCAGGACAGTGATG +
Preference number: 5 (lower is better)
Translates to: VGWGRCPPGQAEMLHTAGEPLRH*ACRTVM
Trigger: CATCACTGTCCTGCAGGCCAAGTGCCGCAACGGCTC...TCCTGCTGTGTGCAGCATCTCGGCCTGCCCAGGAGGGCATCTGCCCCACCCCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CAA 90 bp GCGTGTGCGTCCACTCCTAGGCCCGGGCCCCTCGGCCCCAGGCTCCTTGGCCTGGAGGCTGAATCCAGCTaGAGGGCATCGATGCAATTG +
Preference number: 5 (lower is better)
Translates to: ACASTPRPGPLGPRLLGLEAESS*RASMQL
Trigger: CAATTGCATCGATGCCCTCAAGCTGGATTCAGCCTC...CAGGCCAAGGAGCCTGGGGCCGAGGGGCCCGGGCCTAGGAGTGGACGCACACGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS GCA 90 bp GGACATTCTGGCCACGGGCAGCACCGGTGGCTCGCCCAGCTTCTGTaGAGCGTGCACTATGGAACCGGCATCCACGTCAGCGCCATAGCG +
Preference number: 5 (lower is better)
Translates to: GHSGHGQHRWLAQLL*SVHYGTGIHVSAIA
Trigger: CGCTATGGCGCTGACGTGGATGCCGGTTCCATAGTGCACGCTGCACAGAAGCTGGGCGAGCCACCGGTGCTGCCCGTGGCCAGAATGTCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS CCA 90 bp AGATCCCCGGGCACGAGGTCCCGCGTGGTGAAGGTCAGGCAGGTGTaGTTGAAGCGGCGGCTGTTGCGCAGCGAGGTGACACAGAAGGTG +
Preference number: 5 (lower is better)
Translates to: RSPGTRSRVVKVRQV*LKRRLLRSEVTQKV
Trigger: CACCTTCTGTGTCACCTCGCTGCGCAACAGCCGCCGCTTCAACCACACCTGCCTGACCTTCACCACGCGGGACCTCGTGCCCGGGGATCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS GCA 90 bp CGAGGTGAAGGTGACTTGGTGCAGCTTGATGGCCGGCCCAGCAGATaGATCTGTGGTGGAGGAGGCGGGCGGCTCCACCGAGAGGATCTC +
Preference number: 5 (lower is better)
Translates to: RGEGDLVQLDGRPSR*ICGGGGGRLHREDL
Trigger: GAGATCCTCTCGGTGGAGCCGCCCGCCTCCTCCACCACAGATGCATCTGCTGGGCCGGCCATCAAGCTGCACCAAGTCACCTTCACCTCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS CCA 90 bp GGGGGAGAGCTGCGAATAGGTGGAGTCTCGCTTAGAGCGGGTCAGTaGCTTGAGGAAGGACACACGCTGGCTCAGGCTGTCGGCGCCCTC +
Preference number: 5 (lower is better)
Translates to: GGELRIGGVSLRAGQ*LEEGHTLAQAVGAL
Trigger: GAGGGCGCCGACAGCCTGAGCCAGCGTGTGTCCTTCCTCAAGCCACTGACCCGCTCTAAGCGAGACTCCACCTATTCGCAGCTCTCCCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CAA 90 bp GGCACACAGGCAGGGGGCAGAACTGCCCAGTACAGCTGTCCCAATGCCCCACAGTTGAAGCGGCGGCTGTaGCGCAGCGAGGTGACACAG +
Preference number: 5 (lower is better)
Translates to: GTQAGGRTAQYSCPNAPQLKRRL*RSEVTQ
Trigger: CTGTGTCACCTCGCTGCGCAACAGCCGCCGCTTCAA...CTGTGGGGCATTGGGACAGCTGTACTGGGCAGTTCTGCCCCCTGCCTGTGTGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS CCA 90 bp CTGAGTTCTCGTCAGGCTCCCTCTGCGCATCCGTGGAATAGGGTGTaGGGTGACTCACAGGCCGGGCAGGCATTGAGCCGTTGCGGCACT +
Preference number: 5 (lower is better)
Translates to: LSSRQAPSAHPWNRV*GDSQAGQALSRCGT
Trigger: AGTGCCGCAACGGCTCAATGCCTGCCCGGCCTGTGAGTCACCCCACACCCTATTCCACGGATGCGCAGAGGGAGCCTGACGAGAACTCAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CAA 90 bp GGGGCAGAACTGCCCAGTACAGCTGTCCCAATGCCCCACAGGCCCACTGCCCACAGGTCACACTCACAGTaGAAGGGGTTGCCAGCCAGC +
Preference number: 5 (lower is better)
Translates to: GAELPSTAVPMPHRPTAHRSHSQ*KGLPAS
Trigger: GCTGGCTGGCAACCCCTTCAACTGTGAGTGTGACCT...GTGGGCAGTGGGCCTGTGGGGCATTGGGACAGCTGTACTGGGCAGTTCTGCCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS TCA 90 bp GGAGGCGGGCGGCTCCACCGAGAGGATCTCGTCAGGATTGAAGCCTaGGTTCTCGTCAGGCTCCCTCTGCGCATCCGTGGAATAGGGTGT +
Preference number: 5 (lower is better)
Translates to: GGGRLHREDLVRIEA*VLVRLPLRIRGIGC
Trigger: ACACCCTATTCCACGGATGCGCAGAGGGAGCCTGACGAGAACTCAGGCTTCAATCCTGACGAGATCCTCTCGGTGGAGCCGCCCGCCTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS TCA 90 bp TGGTGGAGGAGGCGGGCGGCTCCACCGAGAGGATCTCGTCAGGATTaGAGCCTGAGTTCTCGTCAGGCTCCCTCTGCGCATCCGTGGAAT +
Preference number: 5 (lower is better)
Translates to: WWRRRAAPPRGSRQD*SLSSRQAPSAHPWN
Trigger: ATTCCACGGATGCGCAGAGGGAGCCTGACGAGAACTCAGGCTTCAATCCTGACGAGATCCTCTCGGTGGAGCCGCCCGCCTCCTCCACCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CAA 90 bp AGGAGGGGGCAAGTTCCGTACACAGCGAGGGGTCACAGGTTCAGAGTCCAGGGCTCACAGTTGAAGGGGTaGCCAGCCAGCTCGCACACC +
Preference number: 5 (lower is better)
Translates to: RRGQVPYTARGHRFRVQGSQLKG*PASSHT
Trigger: GGTGTGCGAGCTGGCTGGCAACCCCTTCAACTGTGA...GCCCTGGACTCTGAACCTGTGACCCCTCGCTGTGTACGGAACTTGCCCCCTCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000229441.2
CDS TCA 90 bp ATCCGTGGAATAGGGTGTGGGGTGACTCACAGGCCGGGCAGGCATTaGGCCGTTGCGGCACTTGGCCTGCAGGACAGTGATGGCATTGAG +
Preference number: 5 (lower is better)
Translates to: IRGIGCGVTHRPGRH*AVAALGLQDSDGIE
Trigger: CTCAATGCCATCACTGTCCTGCAGGCCAAGTGCCGCAACGGCTCAATGCCTGCCCGGCCTGTGAGTCACCCCACACCCTATTCCACGGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS CCA 90 bp GACCATGGAAGGAATAGAGGACATTCTGGCCACGGGCAGCACCGGTaGCTCGCCCAGCTTCTGTGCAGCGTGCACTATGGAACCGGCATC +
Preference number: 5 (lower is better)
Translates to: DHGRNRGHSGHGQHR*LAQLLCSVHYGTGI
Trigger: GATGCCGGTTCCATAGTGCACGCTGCACAGAAGCTGGGCGAGCCACCGGTGCTGCCCGTGGCCAGAATGTCCTCTATTCCTTCCATGGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CAA 90 bp CTGGCCCTGCACCCTGACCAGGGCAGTAGGAGGCACCTCACTGTTTGTGCTTTGCCAGCCTCCAGACCCTaGGAGGCAGGCAGTTTCTCT +
Preference number: 5 (lower is better)
Translates to: LALHPDQGSRRHLTVCALPASRP*EAGSFS
Trigger: AGAGAAACTGCCTGCCTCCAAGGGTCTGGAGGCTGG...CAAAGCACAAACAGTGAGGTGCCTCCTACTGCCCTGGTCAGGGTGCAGGGCCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CAA 90 bp GGGGCAGAACTGCCCAGTACAGCTGTCCCAATGCCCCACAGGCCCACTGCCCACGAGGCTGAATCCAGCTaGAGGGCATCGATGCAATTG +
Preference number: 5 (lower is better)
Translates to: GAELPSTAVPMPHRPTAHEAESS*RASMQL
Trigger: CAATTGCATCGATGCCCTCAAGCTGGATTCAGCCTC...GTGGGCAGTGGGCCTGTGGGGCATTGGGACAGCTGTACTGGGCAGTTCTGCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS CCA 90 bp GTACTTGGAGTCGCTCTTAGCCAGTCCCGTGGGGGTCGGGTGGTCTaGCACATCCAGACTGAAGACCTTGGCGCTCTTGATGGAGCCACT +
Preference number: 5 (lower is better)
Translates to: VLGVALSQSRGGRVV*HIQTEDLGALDGAT
Trigger: AGTGGCTCCATCAAGAGCGCCAAGGTCTTCAGTCTGGATGTGCCAGACCACCCGACCCCCACGGGACTGGCTAAGAGCGACTCCAAGTAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CAA 90 bp AAGGCTCCTCCCTATCTCAATGGGAAGCTAAGGGGCACACAGGCAGGGGGCAGACGAGGTGAAGGTGACTaGGTGCAGCTTGATGGCCGG +
Preference number: 5 (lower is better)
Translates to: KAPPYLNGKLRGTQAGGRRGEGD*VQLDGR
Trigger: CCGGCCATCAAGCTGCACCAAGTCACCTTCACCTCG...TCTGCCCCCTGCCTGTGTGCCCCTTAGCTTCCCATTGAGATAGGGAGGAGCCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CAA 90 bp CCTACACCTGAGATACCAGTGGGGAGCAGGTCTACCCACCACCCCACACCCAGGTCCAGACTGAAGACCTaGGCGCTCTTGATGGAGCCA +
Preference number: 5 (lower is better)
Translates to: PTPEIPVGSRSTHHPTPRSRLKT*ALLMEP
Trigger: TGGCTCCATCAAGAGCGCCAAGGTCTTCAGTCTGGA...CCTGGGTGTGGGGTGGTGGGTAGACCTGCTCCCCACTGGTATCTCAGGTGTAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CAA 90 bp GGGGCAGAACTGCCCAGTACAGCTGTCCCAATGCCCCACAGGCCCACTGCCCACTTGAGCTTGTTTTCATaGAGCCGCAGGTCATGCACA +
Preference number: 5 (lower is better)
Translates to: GAELPSTAVPMPHRPTAHLSLFS*SRRSCT
Trigger: TGTGCATGACCTGCGGCTCAATGAAAACAAGCTCAA...GTGGGCAGTGGGCCTGTGGGGCATTGGGACAGCTGTACTGGGCAGTTCTGCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CAA 90 bp CCCCATACCCTACCCCCAAGGATAGCCCTAGCTTTCCTGGTCAGAGCCCTCACCACCACCTCGATGAGGTaGTGCTGGACGAAGAGGAAC +
Preference number: 5 (lower is better)
Translates to: PHTLPPRIALAFLVRALTTTSMR*CWTKRN
Trigger: GTTCCTCTTCGTCCAGCACAACCTCATCGAGGTGGT...GGTGAGGGCTCTGACCAGGAAAGCTAGGGCTATCCTTGGGGGTAGGGTATGGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CAA 90 bp TACTCTTGGCCTCCCAGGGCTAGGGACCATAGCCTTTCACCTTGTAGATGCCCAGAGCCGTTGCGGCACTaGGCCTGCAGGACAGTGATG +
Preference number: 5 (lower is better)
Translates to: YSWPPRARDHSLSPCRCPEPLRH*ACRTVM
Trigger: CATCACTGTCCTGCAGGCCAAGTGCCGCAACGGCTC...TGGGCATCTACAAGGTGAAAGGCTATGGTCCCTAGCCCTGGGAGGCCAAGAGTA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CAA 90 bp TGTCCCAATGCCCCACAGGCCCACTGCCCACTCAAAGGCAAAGGACAATGCCTTCTTCTGCTTCTCCTCTaGCATGCGCCGCTTCCGCAG +
Preference number: 5 (lower is better)
Translates to: CPNAPQAHCPLKGKGQCLLLLLL*HAPLPQ
Trigger: CTGCGGAAGCGGCGCATGCAAGAGGAGAAGCAGAAG...AAGGCATTGTCCTTTGCCTTTGAGTGGGCAGTGGGCCTGTGGGGCATTGGGACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CAA 90 bp GCTTACTCTTGGCCTCCCAGGGCTAGGGACCATAGCCTTTCACCTTGTAGATGCGAGCGGGTCAGTGGCTaGAGGAAGGACACACGCTGG +
Preference number: 5 (lower is better)
Translates to: AYSWPPRARDHSLSPCRCERVSG*RKDTRW
Trigger: CCAGCGTGTGTCCTTCCTCAAGCCACTGACCCGCTC...GCATCTACAAGGTGAAAGGCTATGGTCCCTAGCCCTGGGAGGCCAAGAGTAAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CAA 90 bp TCTTTTCCTCTCTCTGGGCCATCCGTAGTGGGAGGAGAGGATGCCCAATGTCCAGAGCGGGTCAGTGGCTaGAGGAAGGACACACGCTGG +
Preference number: 5 (lower is better)
Translates to: SFPLSGPSVVGGEDAQCPERVSG*RKDTRW
Trigger: CCAGCGTGTGTCCTTCCTCAAGCCACTGACCCGCTC...TGGACATTGGGCATCCTCTCCTCCCACTACGGATGGCCCAGAGAGAGGAAAAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS CCA 90 bp TCAATGTACTTGGAGTCGCTCTTAGCCAGTCCCGTGGGGGTCGGGTaGTCTGGCACATCCAGACTGAAGACCTTGGCGCTCTTGATGGAG +
Preference number: 5 (lower is better)
Translates to: SMYLESLLASPVGVG*SGTSRLKTLALLME
Trigger: CTCCATCAAGAGCGCCAAGGTCTTCAGTCTGGATGTGCCAGACCACCCGACCCCCACGGGACTGGCTAAGAGCGACTCCAAGTACATTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CAA 90 bp TACTCTTGGCCTCCCAGGGCTAGGGACCATAGCCTTTCACCTTGTAGATGCCCACGAGGTGAAGGTGACTaGGTGCAGCTTGATGGCCGG +
Preference number: 5 (lower is better)
Translates to: YSWPPRARDHSLSPCRCPRGEGD*VQLDGR
Trigger: CCGGCCATCAAGCTGCACCAAGTCACCTTCACCTCG...TGGGCATCTACAAGGTGAAAGGCTATGGTCCCTAGCCCTGGGAGGCCAAGAGTA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CAA 90 bp TCTTTTCCTCTCTCTGGGCCATCCGTAGTGGGAGGAGAGGATGCCCAATGTCCACCAGCCTCCAGACCCTaGGAGGCAGGCAGTTTCTCT +
Preference number: 5 (lower is better)
Translates to: SFPLSGPSVVGGEDAQCPPASRP*EAGSFS
Trigger: AGAGAAACTGCCTGCCTCCAAGGGTCTGGAGGCTGG...TGGACATTGGGCATCCTCTCCTCCCACTACGGATGGCCCAGAGAGAGGAAAAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CAA 90 bp CTGGCCCTGCACCCTGACCAGGGCAGTAGGAGGCACCTCACTGTTTGTGCTTTGAGGATCTCGTCAGGATaGAAGCCTGAGTTCTCGTCA +
Preference number: 5 (lower is better)
Translates to: LALHPDQGSRRHLTVCALRISSG*KPEFSS
Trigger: TGACGAGAACTCAGGCTTCAATCCTGACGAGATCCT...CAAAGCACAAACAGTGAGGTGCCTCCTACTGCCCTGGTCAGGGTGCAGGGCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CAA 90 bp TGTCCCAATGCCCCACAGGCCCACTGCCCACTCAAAGGCAAAGGACAATGCCTTTCCAGACTGAAGACCTaGGCGCTCTTGATGGAGCCA +
Preference number: 5 (lower is better)
Translates to: CPNAPQAHCPLKGKGQCLSRLKT*ALLMEP
Trigger: TGGCTCCATCAAGAGCGCCAAGGTCTTCAGTCTGGA...AAGGCATTGTCCTTTGCCTTTGAGTGGGCAGTGGGCCTGTGGGGCATTGGGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS GCA 90 bp CGGCGGCTGTTGCGCAGCGAGGTGACACAGAAGGTGTACTCAGTGTaGGCTCGCAGCTTGTCCAACGTCACAATCTCTTTCTTGTTCTTG +
Preference number: 5 (lower is better)
Translates to: RRLLRSEVTQKVYSV*ARSLSNVTISFLFL
Trigger: CAAGAACAAGAAAGAGATTGTGACGTTGGACAAGCTGCGAGCGCACACTGAGTACACCTTCTGTGTCACCTCGCTGCGCAACAGCCGCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS CCA 90 bp AGCGCTCCCAGATCTTATGTGTGCTCTCAGACGAGTACTCGGGGCTaGAGGAGTACCCTGAGTAGTAATGTCTGGGGGAGAGCTGCGAAT +
Preference number: 5 (lower is better)
Translates to: SAPRSYVCSQTSTRG*RSTLSSNVWGRAAN
Trigger: ATTCGCAGCTCTCCCCCAGACATTACTACTCAGGGTACTCCTCCAGCCCCGAGTACTCGTCTGAGAGCACACATAAGATCTGGGAGCGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CAA 90 bp TCTTTTCCTCTCTCTGGGCCATCCGTAGTGGGAGGAGAGGATGCCCAATGTCCAAGCACGGCCTTGAGCTaGTTTTCATTGAGCCGCAGG +
Preference number: 5 (lower is better)
Translates to: SFPLSGPSVVGGEDAQCPSTALS*FSLSRR
Trigger: CCTGCGGCTCAATGAAAACAAGCTCAAGGCCGTGCT...TGGACATTGGGCATCCTCTCCTCCCACTACGGATGGCCCAGAGAGAGGAAAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CAA 90 bp AAGGGGCACACAGGCAGGGGGCAGAACTGCCCAGTACAGCTGTCCCAATGCCCCGTCACAATCTCTTTCTaGTTCTTGAGTGTCATGACG +
Preference number: 5 (lower is better)
Translates to: KGHTGRGQNCPVQLSQCPVTISF*FLSVMT
Trigger: CGTCATGACACTCAAGAACAAGAAAGAGATTGTGAC...GGGGCATTGGGACAGCTGTACTGGGCAGTTCTGCCCCCTGCCTGTGTGCCCCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CAA 90 bp ATCCCCACATTCTACATCATCTCCACACTGGCCCCAGGCCTTGTCATTCACTGTAGGTCACACTCACAGTaGAAGGGGTTGCCAGCCAGC +
Preference number: 5 (lower is better)
Translates to: IPTFYIISTLAPGLVIHCRSHSQ*KGLPAS
Trigger: GCTGGCTGGCAACCCCTTCAACTGTGAGTGTGACCT...ACAGTGAATGACAAGGCCTGGGGCCAGTGTGGAGATGATGTAGAATGTGGGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CAA 90 bp TGGGAAGCTAAGGGGCACACAGGCAGGGGGCAGAACTGCCCAGTACAGCTGTCCATCTCTTTCTTGTTCTaGAGTGTCATGACGTCAGAG +
Preference number: 5 (lower is better)
Translates to: WEAKGHTGRGQNCPVQLSISFLF*SVMTSE
Trigger: CTCTGACGTCATGACACTCAAGAACAAGAAAGAGAT...GGACAGCTGTACTGGGCAGTTCTGCCCCCTGCCTGTGTGCCCCTTAGCTTCCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CAA 90 bp ATTGGGTGTTGGTTACTTCACAGTCAGGTGGTGGTCAAGTGTGTGTGTGTGGGTAAGACCTTGGCGCTCTaGATGGAGCCACTGGACGAC +
Preference number: 5 (lower is better)
Translates to: IGCWLLHSQVVVKCVCVGKTLAL*MEPLDD
Trigger: GTCGTCCAGTGGCTCCATCAAGAGCGCCAAGGTCTT...ACCCACACACACACACTTGACCACCACCTGACTGTGAAGTAACCAACACCCAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CAA 90 bp GCTTACTCTTGGCCTCCCAGGGCTAGGGACCATAGCCTTTCACCTTGTAGATGCTTGAGCTTGTTTTCATaGAGCCGCAGGTCATGCACA +
Preference number: 5 (lower is better)
Translates to: AYSWPPRARDHSLSPCRCLSLFS*SRRSCT
Trigger: TGTGCATGACCTGCGGCTCAATGAAAACAAGCTCAA...GCATCTACAAGGTGAAAGGCTATGGTCCCTAGCCCTGGGAGGCCAAGAGTAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CAA 90 bp ATTGGGTGTTGGTTACTTCACAGTCAGGTGGTGGTCAAGTGTGTGTGTGTGGGTAGGATCTCGTCAGGATaGAAGCCTGAGTTCTCGTCA +
Preference number: 5 (lower is better)
Translates to: IGCWLLHSQVVVKCVCVGRISSG*KPEFSS
Trigger: TGACGAGAACTCAGGCTTCAATCCTGACGAGATCCT...ACCCACACACACACACTTGACCACCACCTGACTGTGAAGTAACCAACACCCAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CAA 90 bp TACTCTTGGCCTCCCAGGGCTAGGGACCATAGCCTTTCACCTTGTAGATGCCCAATCTCTTTCTTGTTCTaGAGTGTCATGACGTCAGAG +
Preference number: 5 (lower is better)
Translates to: YSWPPRARDHSLSPCRCPISFLF*SVMTSE
Trigger: CTCTGACGTCATGACACTCAAGAACAAGAAAGAGAT...TGGGCATCTACAAGGTGAAAGGCTATGGTCCCTAGCCCTGGGAGGCCAAGAGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CAA 90 bp GAAAATGTTTGTTTTCCTGTCCGCTATTATTGGGTGTTGGTTACTTCACAGTCATCACAGTTGAAGGGGTaGCCAGCCAGCTCGCACACC +
Preference number: 5 (lower is better)
Translates to: ENVCFPVRYYWVLVTSQSSQLKG*PASSHT
Trigger: GGTGTGCGAGCTGGCTGGCAACCCCTTCAACTGTGA...TGACTGTGAAGTAACCAACACCCAATAATAGCGGACAGGAAAACAAACATTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CAA 90 bp GAAAATGTTTGTTTTCCTGTCCGCTATTATTGGGTGTTGGTTACTTCACAGTCACTTCTGCTTCTCCTCTaGCATGCGCCGCTTCCGCAG +
Preference number: 5 (lower is better)
Translates to: ENVCFPVRYYWVLVTSQSLLLLL*HAPLPQ
Trigger: CTGCGGAAGCGGCGCATGCAAGAGGAGAAGCAGAAG...TGACTGTGAAGTAACCAACACCCAATAATAGCGGACAGGAAAACAAACATTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CAA 90 bp GTAAACTTTAAGGAAAATGTTTGTTTTCCTGTCCGCTATTATTGGGTGTTGGTTTTGAAGCGGCGGCTGTaGCGCAGCGAGGTGACACAG +
Preference number: 5 (lower is better)
Translates to: VNFKENVCFPVRYYWVLVLKRRL*RSEVTQ
Trigger: CTGTGTCACCTCGCTGCGCAACAGCCGCCGCTTCAA...AACCAACACCCAATAATAGCGGACAGGAAAACAAACATTTTCCTTAAAGTTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CAA 90 bp GCCTCTCGCCCACCATCCTCCTCACTCAAGAGTCACAAATCTCTTATCTCATGTATAGTCTTCTTAACATaGACGGACTTCTGCTTCTCC +
Preference number: 5 (lower is better)
Translates to: ASRPPSSSLKSHKSLISCIVFLT*TDFCFS
Trigger: GGAGAAGCAGAAGTCCGTCAATGTTAAGAAGACTAT...ACATGAGATAAGAGATTTGTGACTCTTGAGTGAGGAGGATGGTGGGCGAGAGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CAA 90 bp GTAAACTTTAAGGAAAATGTTTGTTTTCCTGTCCGCTATTATTGGGTGTTGGTTCTGTCCAGCGGGCTGTaGAGGGGGCTGCCTTTCTCA +
Preference number: 5 (lower is better)
Translates to: VNFKENVCFPVRYYWVLVLSSGL*RGLPFS
Trigger: TGAGAAAGGCAGCCCCCTCAACAGCCCGCTGGACAG...AACCAACACCCAATAATAGCGGACAGGAAAACAAACATTTTCCTTAAAGTTTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CAA 90 bp GAAAATGTTTGTTTTCCTGTCCGCTATTATTGGGTGTTGGTTACTTCACAGTCAGTCACAATCTCTTTCTaGTTCTTGAGTGTCATGACG +
Preference number: 5 (lower is better)
Translates to: ENVCFPVRYYWVLVTSQSVTISF*FLSVMT
Trigger: CGTCATGACACTCAAGAACAAGAAAGAGATTGTGAC...TGACTGTGAAGTAACCAACACCCAATAATAGCGGACAGGAAAACAAACATTTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS-3UTR CAA 90 bp GTAAACTTTAAGGAAAATGTTTGTTTTCCTGTCCGCTATTATTGGGTGTTGGTTATAGTCTTCTTAACATaGACGGACTTCTGCTTCTCC +
Preference number: 5 (lower is better)
Translates to: VNFKENVCFPVRYYWVLVIVFLT*TDFCFS
Trigger: GGAGAAGCAGAAGTCCGTCAATGTTAAGAAGACTAT...AACCAACACCCAATAATAGCGGACAGGAAAACAAACATTTTCCTTAAAGTTTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS GCA 72 bp GCCACTGGACGACACGCTGCAGGTCTTACGGCTCACTaGGGCGTCGGCGCTCAGCTGGCGCTGCAGCGGGTG +
Preference number: 6 (lower is better)
Translates to: ATGRHAAGLTAH*GVGAQLALQRV
Trigger: CACCCGCTGCAGCGCCAGCTGAGCGCCGACGCCGCAGTGAGCCGTAAGACCTGCAGCGTGTCGTCCAGTGGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS CCA 72 bp TCGATGAGCCAGCAGTCAGCGCGCACAGCCCCTGGCTaGCACACGCACAGCAGCGCTGCCGCACACAGCCCC +
Preference number: 6 (lower is better)
Translates to: SMSQQSARTAPG*HTHSSAAAHSP
Trigger: GGGGCTGTGTGCGGCAGCGCTGCTGTGCGTGTGCCAGCCAGGGGCTGTGCGCGCTGACTGCTGGCTCATCGA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS CCA 72 bp CCCCTCGATGAGCCAGCAGTCAGCGCGCACAGCCCCTaGCTGGCACACGCACAGCAGCGCTGCCGCACACAG +
Preference number: 6 (lower is better)
Translates to: PLDEPAVSAHSP*LAHAQQRCRTQ
Trigger: CTGTGTGCGGCAGCGCTGCTGTGCGTGTGCCAGCCAGGGGCTGTGCGCGCTGACTGCTGGCTCATCGAGGGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS CAA 90 bp CTGGCCAGGCTGGCGAAGGTCGCGCCGTCCAGGCGGCTGAGGCGGTaGGAGGAGAGGTCGATGCTGATGAGACTGGGGCACTCGGAGAAG +
Preference number: 6 (lower is better)
Translates to: LARLAKVAPSRRLRR*EERSMLMRLGHSEK
Trigger: CTTCTCCGAGTGCCCCAGTCTCATCAGCATCGACCTCTCCTCCAACCGCCTCAGCCGCCTGGACGGCGCGACCTTCGCCAGCCTGGCCAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS GCA 72 bp GGCCACGGGCAGCACCGGTGGCTCGCCCAGCTTCTGTaGAGCGTGCACTATGGAACCGGCATCCACGTCAGC +
Preference number: 6 (lower is better)
Translates to: GHGQHRWLAQLL*SVHYGTGIHVS
Trigger: GCTGACGTGGATGCCGGTTCCATAGTGCACGCTGCACAGAAGCTGGGCGAGCCACCGGTGCTGCCCGTGGCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS GCA 72 bp GGTGACTTGGTGCAGCTTGATGGCCGGCCCAGCAGATaGATCTGTGGTGGAGGAGGCGGGCGGCTCCACCGA +
Preference number: 6 (lower is better)
Translates to: GDLVQLDGRPSR*ICGGGGGRLHR
Trigger: TCGGTGGAGCCGCCCGCCTCCTCCACCACAGATGCATCTGCTGGGCCGGCCATCAAGCTGCACCAAGTCACC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS CCA 72 bp GGCACGAGGTCCCGCGTGGTGAAGGTCAGGCAGGTGTaGTTGAAGCGGCGGCTGTTGCGCAGCGAGGTGACA +
Preference number: 6 (lower is better)
Translates to: GTRSRVVKVRQV*LKRRLLRSEVT
Trigger: TGTCACCTCGCTGCGCAACAGCCGCCGCTTCAACCACACCTGCCTGACCTTCACCACGCGGGACCTCGTGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS CAA 90 bp TCCCCGGGCACGAGGTCCCGCGTGGTGAAGGTCAGGCAGGTGTGGTaGAAGCGGCGGCTGTTGCGCAGCGAGGTGACACAGAAGGTGTAC +
Preference number: 6 (lower is better)
Translates to: SPGTRSRVVKVRQVW*KRRLLRSEVTQKVY
Trigger: GTACACCTTCTGTGTCACCTCGCTGCGCAACAGCCGCCGCTTCAACCACACCTGCCTGACCTTCACCACGCGGGACCTCGTGCCCGGGGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS GCA 72 bp CGTAGTAGAGAGCGGGGAAGCTGTGCCGGTGCTCGCTaGAGTGGTAGGCCGGCTTCACCTCCAGGTGGTGGA +
Preference number: 6 (lower is better)
Translates to: RSRERGSCAGAR*SGRPASPPGGG
Trigger: TCCACCACCTGGAGGTGAAGCCGGCCTACCACTGCAGCGAGCACCGGCACAGCTTCCCCGCTCTCTACTACG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS CAA 90 bp CCGCTGCTGCCCGTGGGCACCAGGGGAAGCCTGTCCAGCGGGCTGTaGAGGGGGCTGCCTTTCTCAATGTACTTGGAGTCGCTCTTAGCC +
Preference number: 6 (lower is better)
Translates to: PLLPVGTRGSLSSGL*RGLPFSMYLESLLA
Trigger: GGCTAAGAGCGACTCCAAGTACATTGAGAAAGGCAGCCCCCTCAACAGCCCGCTGGACAGGCTTCCCCTGGTGCCCACGGGCAGCAGCGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS CCA 72 bp AGCCTGAGTTCTCGTCAGGCTCCCTCTGCGCATCCGTaGAATAGGGTGTGGGGTGACTCACAGGCCGGGCAG +
Preference number: 6 (lower is better)
Translates to: SLSSRQAPSAHP*NRVWGDSQAGQ
Trigger: CTGCCCGGCCTGTGAGTCACCCCACACCCTATTCCACGGATGCGCAGAGGGAGCCTGACGAGAACTCAGGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS CCA 72 bp CCGGTGGCTCGCCCAGCTTCTGTGCAGCGTGCACTATaGAACCGGCATCCACGTCAGCGCCATAGCGCATCT +
Preference number: 6 (lower is better)
Translates to: PVARPASVQRAL*NRHPRQRHSAS
Trigger: AGATGCGCTATGGCGCTGACGTGGATGCCGGTTCCATAGTGCACGCTGCACAGAAGCTGGGCGAGCCACCGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS CAA 72 bp GAGGCGGGCGGCTCCACCGAGAGGATCTCGTCAGGATaGAAGCCTGAGTTCTCGTCAGGCTCCCTCTGCGCA +
Preference number: 6 (lower is better)
Translates to: EAGGSTERISSG*KPEFSSGSLCA
Trigger: TGCGCAGAGGGAGCCTGACGAGAACTCAGGCTTCAATCCTGACGAGATCCTCTCGGTGGAGCCGCCCGCCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS CAA 72 bp CCCGTGGGCACCAGGGGAAGCCTGTCCAGCGGGCTGTaGAGGGGGCTGCCTTTCTCAATGTACTTGGAGTCG +
Preference number: 6 (lower is better)
Translates to: PVGTRGSLSSGL*RGLPFSMYLES
Trigger: CGACTCCAAGTACATTGAGAAAGGCAGCCCCCTCAACAGCCCGCTGGACAGGCTTCCCCTGGTGCCCACGGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS CAA 90 bp GTGGTGGAGGAGGCGGGCGGCTCCACCGAGAGGATCTCGTCAGGATaGAAGCCTGAGTTCTCGTCAGGCTCCCTCTGCGCATCCGTGGAA +
Preference number: 6 (lower is better)
Translates to: VVEEAGGSTERISSG*KPEFSSGSLCASVE
Trigger: TTCCACGGATGCGCAGAGGGAGCCTGACGAGAACTCAGGCTTCAATCCTGACGAGATCCTCTCGGTGGAGCCGCCCGCCTCCTCCACCAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS CAA 90 bp TCCCGCGTGGTGAAGGTCAGGCAGGTGTGGTTGAAGCGGCGGCTGTaGCGCAGCGAGGTGACACAGAAGGTGTACTCAGTGTGCGCTCGC +
Preference number: 6 (lower is better)
Translates to: SRVVKVRQVWLKRRL*RSEVTQKVYSVCAR
Trigger: GCGAGCGCACACTGAGTACACCTTCTGTGTCACCTCGCTGCGCAACAGCCGCCGCTTCAACCACACCTGCCTGACCTTCACCACGCGGGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS CAA 90 bp AGCCTGTCCAGCGGGCTGTTGAGGGGGCTGCCTTTCTCAATGTACTaGGAGTCGCTCTTAGCCAGTCCCGTGGGGGTCGGGTGGTCTGGC +
Preference number: 6 (lower is better)
Translates to: SLSSGLLRGLPFSMY*ESLLASPVGVGWSG
Trigger: GCCAGACCACCCGACCCCCACGGGACTGGCTAAGAGCGACTCCAAGTACATTGAGAAAGGCAGCCCCCTCAACAGCCCGCTGGACAGGCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS CAA 90 bp ATGATGACAACCAGGGTGGCCGAGGTGAAGGTGACTTGGTGCAGCTaGATGGCCGGCCCAGCAGATGCATCTGTGGTGGAGGAGGCGGGC +
Preference number: 6 (lower is better)
Translates to: MMTTRVAEVKVTWCS*MAGPADASVVEEAG
Trigger: GCCCGCCTCCTCCACCACAGATGCATCTGCTGGGCCGGCCATCAAGCTGCACCAAGTCACCTTCACCTCGGCCACCCTGGTTGTCATCAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS TCA 72 bp AGGCGGGCGGCTCCACCGAGAGGATCTCGTCAGGATTaGAGCCTGAGTTCTCGTCAGGCTCCCTCTGCGCAT +
Preference number: 6 (lower is better)
Translates to: RRAAPPRGSRQD*SLSSRQAPSAH
Trigger: ATGCGCAGAGGGAGCCTGACGAGAACTCAGGCTTCAATCCTGACGAGATCCTCTCGGTGGAGCCGCCCGCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS CCA 72 bp TTGGAGTCGCTCTTAGCCAGTCCCGTGGGGGTCGGGTaGTCTGGCACATCCAGACTGAAGACCTTGGCGCTC +
Preference number: 6 (lower is better)
Translates to: LESLLASPVGVG*SGTSRLKTLAL
Trigger: GAGCGCCAAGGTCTTCAGTCTGGATGTGCCAGACCACCCGACCCCCACGGGACTGGCTAAGAGCGACTCCAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS CAA 72 bp GGGGTCGGGTGGTCTGGCACATCCAGACTGAAGACCTaGGCGCTCTTGATGGAGCCACTGGACGACACGCTG +
Preference number: 6 (lower is better)
Translates to: GVGWSGTSRLKT*ALLMEPLDDTL
Trigger: CAGCGTGTCGTCCAGTGGCTCCATCAAGAGCGCCAAGGTCTTCAGTCTGGATGTGCCAGACCACCCGACCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS CAA 72 bp AGCGGGCTGTTGAGGGGGCTGCCTTTCTCAATGTACTaGGAGTCGCTCTTAGCCAGTCCCGTGGGGGTCGGG +
Preference number: 6 (lower is better)
Translates to: SGLLRGLPFSMY*ESLLASPVGVG
Trigger: CCCGACCCCCACGGGACTGGCTAAGAGCGACTCCAAGTACATTGAGAAAGGCAGCCCCCTCAACAGCCCGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS CAA 90 bp GGGGTCGGGTGGTCTGGCACATCCAGACTGAAGACCTTGGCGCTCTaGATGGAGCCACTGGACGACACGCTGCAGGTCTTACGGCTCACT +
Preference number: 6 (lower is better)
Translates to: GVGWSGTSRLKTLAL*MEPLDDTLQVLRLT
Trigger: AGTGAGCCGTAAGACCTGCAGCGTGTCGTCCAGTGGCTCCATCAAGAGCGCCAAGGTCTTCAGTCTGGATGTGCCAGACCACCCGACCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS TCA 72 bp GCCAGGCTAGGAAGCCGAAGAGGTCACACTCACAGTTaGAGGGGTTGCCAGCCAGCTCGCACACCATCAGGC +
Preference number: 6 (lower is better)
Translates to: ARLGSRRGHTHS*RGCQPARTPSG
Trigger: GCCTGATGGTGTGCGAGCTGGCTGGCAACCCCTTCAACTGTGAGTGTGACCTCTTCGGCTTCCTAGCCTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS TCA 72 bp CGGCTCCACCGAGAGGATCTCGTCAGGATTGAAGCCTaGGTTCTCGTCAGGCTCCCTCTGCGCATCCGTGGA +
Preference number: 6 (lower is better)
Translates to: RLHREDLVRIEA*VLVRLPLRIRG
Trigger: TCCACGGATGCGCAGAGGGAGCCTGACGAGAACTCAGGCTTCAATCCTGACGAGATCCTCTCGGTGGAGCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS CCA 72 bp GTCGCTCTTAGCCAGTCCCGTGGGGGTCGGGTGGTCTaGCACATCCAGACTGAAGACCTTGGCGCTCTTGAT +
Preference number: 6 (lower is better)
Translates to: VALSQSRGGRVV*HIQTEDLGALD
Trigger: ATCAAGAGCGCCAAGGTCTTCAGTCTGGATGTGCCAGACCACCCGACCCCCACGGGACTGGCTAAGAGCGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS TCA 72 bp GGGCACGAGCAGCGGGTAACCGGCAAACTCCCTCGGTaGCTCACACTGCAGGCGATCATAGTTCTTGGTGAC +
Preference number: 6 (lower is better)
Translates to: GHEQRVTGKLPR*LTLQAIIVLGD
Trigger: GTCACCAAGAACTATGATCGCCTGCAGTGTGAGTCACCGAGGGAGTTTGCCGGTTACCCGCTGCTCGTGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS GCA 72 bp ATGACAACCAGGGTGGCCGAGGTGAAGGTGACTTGGTaGAGCTTGATGGCCGGCCCAGCAGATGCATCTGTG +
Preference number: 6 (lower is better)
Translates to: MTTRVAEVKVTW*SLMAGPADASV
Trigger: CACAGATGCATCTGCTGGGCCGGCCATCAAGCTGCACCAAGTCACCTTCACCTCGGCCACCCTGGTTGTCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS CCA 72 bp CCACCTTGGGTGTGTCTAGCCCAGCCTCCAGACCCTTaGAGGCAGGCAGTTTCTCTCCGACCATGGAAGGAA +
Preference number: 6 (lower is better)
Translates to: PPWVCLAQPPDP*RQAVSLRPWKE
Trigger: TTCCTTCCATGGTCGGAGAGAAACTGCCTGCCTCCAAGGGTCTGGAGGCTGGGCTAGACACACCCAAGGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS CCA 72 bp CTGCGAATAGGTGGAGTCTCGCTTAGAGCGGGTCAGTaGCTTGAGGAAGGACACACGCTGGCTCAGGCTGTC +
Preference number: 6 (lower is better)
Translates to: LRIGGVSLRAGQ*LEEGHTLAQAV
Trigger: GACAGCCTGAGCCAGCGTGTGTCCTTCCTCAAGCCACTGACCCGCTCTAAGCGAGACTCCACCTATTCGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS CCA 72 bp TCATCCTTCGCGAACTGGACCTTCTTACGCAGGGCGTaGCCGGCAGCCATGTATACCTCCTCGCGATGGTGT +
Preference number: 6 (lower is better)
Translates to: SSFANWTFLRRA*PAAMYTSSRWC
Trigger: ACACCATCGCGAGGAGGTATACATGGCTGCCGGCCACGCCCTGCGTAAGAAGGTCCAGTTCGCGAAGGATGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS CCA 72 bp TCAAGGATGTCATGCAGGTCCTCATCCTTCGCGAACTaGACCTTCTTACGCAGGGCGTGGCCGGCAGCCATG +
Preference number: 6 (lower is better)
Translates to: SRMSCRSSSFAN*TFLRRAWPAAM
Trigger: CATGGCTGCCGGCCACGCCCTGCGTAAGAAGGTCCAGTTCGCGAAGGATGAGGACCTGCATGACATCCTTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS CAA 72 bp GTGAAGGTCAGGCAGGTGTGGTTGAAGCGGCGGCTGTaGCGCAGCGAGGTGACACAGAAGGTGTACTCAGTG +
Preference number: 6 (lower is better)
Translates to: VKVRQVWLKRRL*RSEVTQKVYSV
Trigger: CACTGAGTACACCTTCTGTGTCACCTCGCTGCGCAACAGCCGCCGCTTCAACCACACCTGCCTGACCTTCAC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS CAA 90 bp CCTTTGGTAGCCACCTTGGGTGTGTCTAGCCCAGCCTCCAGACCCTaGGAGGCAGGCAGTTTCTCTCCGACCATGGAAGGAATAGAGGAC +
Preference number: 6 (lower is better)
Translates to: PLVATLGVSSPASRP*EAGSFSPTMEGIED
Trigger: GTCCTCTATTCCTTCCATGGTCGGAGAGAAACTGCCTGCCTCCAAGGGTCTGGAGGCTGGGCTAGACACACCCAAGGTGGCTACCAAAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS CCA 72 bp ATGATGACAACCAGGGTGGCCGAGGTGAAGGTGACTTaGTGCAGCTTGATGGCCGGCCCAGCAGATGCATCT +
Preference number: 6 (lower is better)
Translates to: MMTTRVAEVKVT*CSLMAGPADAS
Trigger: AGATGCATCTGCTGGGCCGGCCATCAAGCTGCACCAAGTCACCTTCACCTCGGCCACCCTGGTTGTCATCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS CAA 72 bp TGGTCTGGCACATCCAGACTGAAGACCTTGGCGCTCTaGATGGAGCCACTGGACGACACGCTGCAGGTCTTA +
Preference number: 6 (lower is better)
Translates to: WSGTSRLKTLAL*MEPLDDTLQVL
Trigger: TAAGACCTGCAGCGTGTCGTCCAGTGGCTCCATCAAGAGCGCCAAGGTCTTCAGTCTGGATGTGCCAGACCA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS GCA 72 bp TTGCGCAGCGAGGTGACACAGAAGGTGTACTCAGTGTaGGCTCGCAGCTTGTCCAACGTCACAATCTCTTTC +
Preference number: 6 (lower is better)
Translates to: LRSEVTQKVYSV*ARSLSNVTISF
Trigger: GAAAGAGATTGTGACGTTGGACAAGCTGCGAGCGCACACTGAGTACACCTTCTGTGTCACCTCGCTGCGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS CAA 90 bp CGCAGCGAGGTGACACAGAAGGTGTACTCAGTGTGCGCTCGCAGCTaGTCCAACGTCACAATCTCTTTCTTGTTCTTGAGTGTCATGACG +
Preference number: 6 (lower is better)
Translates to: RSEVTQKVYSVCARS*SNVTISFLFLSVMT
Trigger: CGTCATGACACTCAAGAACAAGAAAGAGATTGTGACGTTGGACAAGCTGCGAGCGCACACTGAGTACACCTTCTGTGTCACCTCGCTGCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS GCA 72 bp ATCTCTAAGATAGTCTTCTTAACATTGACGGACTTCTaGTTCTCCTCTTGCATGCGCCGCTTCCGCAGGCAG +
Preference number: 6 (lower is better)
Translates to: ISKIVFLTLTDF*FSSCMRRFRRQ
Trigger: CTGCCTGCGGAAGCGGCGCATGCAAGAGGAGAAGCAGAAGTCCGTCAATGTTAAGAAGACTATCTTAGAGAT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2
CDS CAA 72 bp GTGACACAGAAGGTGTACTCAGTGTGCGCTCGCAGCTaGTCCAACGTCACAATCTCTTTCTTGTTCTTGAGT +
Preference number: 6 (lower is better)
Translates to: VTQKVYSVCARS*SNVTISFLFLS
Trigger: ACTCAAGAACAAGAAAGAGATTGTGACGTTGGACAAGCTGCGAGCGCACACTGAGTACACCTTCTGTGTCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088592.6
ENSMUST00000229441.2