RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ELFN1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000048988

Ensembl transcript IDs: ENSMUST00000050519.8

Found 186 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ATATCTACTGTCTCGGCCACCTGCGGCCTCCCCAAGCTGTCCCTGTaGGCCAGGTGCTGTATGCAGCGGCCCCTGGTTGTGCACATATGT +
Preference number: 1 (lower is better)
Translates to: ISTVSATCGLPKLSL*ARCCMQRPLVVHIC
Trigger: ACATATGTGCACAACCAGGGGCCGCTGCATACAGCACCTGGCCCACAGGGACAGCTTGGGGAGGCCGCAGGTGGCCGAGACAGTAGATAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
3UTR GCA 90 bp CCACCTGCGGCCTCCCCAAGCTGTCCCTGTGGGCCAGGTGCTGTATaGAGCGGCCCCTGGTTGTGCACATATGTTGGATTTAGTGTTAAG +
Preference number: 1 (lower is better)
Translates to: PPAASPSCPCGPGAV*SGPWLCTYVGFSVK
Trigger: CTTAACACTAAATCCAACATATGTGCACAACCAGGGGCCGCTGCATACAGCACCTGGCCCACAGGGACAGCTTGGGGAGGCCGCAGGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
3UTR CCA 90 bp CAGTCAGGGATAGCTGCTGTGGGTGGTCTATCCTTTTTGGTCCAATaGGCATCACGAGTTTCGGAGAGGACAGGGCCAGGCTTCCTTGGG +
Preference number: 1 (lower is better)
Translates to: QSGIAAVGGLSFLVQ*ASRVSERTGPGFLG
Trigger: CCCAAGGAAGCCTGGCCCTGTCCTCTCCGAAACTCGTGATGCCCATTGGACCAAAAAGGATAGACCACCCACAGCAGCTATCCCTGACTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
3UTR CCA 90 bp TCCCCAAGCTGTCCCTGTGGGCCAGGTGCTGTATGCAGCGGCCCCTaGTTGTGCACATATGTTGGATTTAGTGTTAAGTCTCAGTCAGGG +
Preference number: 1 (lower is better)
Translates to: SPSCPCGPGAVCSGP*LCTYVGFSVKSQSG
Trigger: CCCTGACTGAGACTTAACACTAAATCCAACATATGTGCACAACCAGGGGCCGCTGCATACAGCACCTGGCCCACAGGGACAGCTTGGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
3UTR GCA 90 bp AGCTGTCCCTGTGGGCCAGGTGCTGTATGCAGCGGCCCCTGGTTGTaGACATATGTTGGATTTAGTGTTAAGTCTCAGTCAGGGATAGCT +
Preference number: 1 (lower is better)
Translates to: SCPCGPGAVCSGPWL*TYVGFSVKSQSGIA
Trigger: AGCTATCCCTGACTGAGACTTAACACTAAATCCAACATATGTGCACAACCAGGGGCCGCTGCATACAGCACCTGGCCCACAGGGACAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
3UTR GCA 90 bp ATTACAGTTTACATGGAAGTTAGTATATCTACTGTCTCGGCCACCTaGGGCCTCCCCAAGCTGTCCCTGTGGGCCAGGTGCTGTATGCAG +
Preference number: 1 (lower is better)
Translates to: ITVYMEVSISTVSAT*GLPKLSLWARCCMQ
Trigger: CTGCATACAGCACCTGGCCCACAGGGACAGCTTGGGGAGGCCGCAGGTGGCCGAGACAGTAGATATACTAACTTCCATGTAAACTGTAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
3UTR CCA 90 bp TGTACAATAGAACAGCTACAGTGTACAATAAAGATGGGGTCGAGGTaGAGGGACCACACAATGTTTCCCAGCCTGCACCCCTCTTGCCAC +
Preference number: 1 (lower is better)
Translates to: CTIEQLQCTIKMGSR*RDHTMFPSLHPSCH
Trigger: GTGGCAAGAGGGGTGCAGGCTGGGAAACATTGTGTGGTCCCTCCACCTCGACCCCATCTTTATTGTACACTGTAGCTGTTCTATTGTACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
3UTR GCA 90 bp TGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTaGTTGCTTGCACCAGGCAGCAGGCACATTACAGTTTACATGGAA +
Preference number: 1 (lower is better)
Translates to: CVSVCVCVCVCVCVS*LLAPGSRHITVYME
Trigger: TTCCATGTAAACTGTAATGTGCCTGCTGCCTGGTGCAAGCAAGCAAGACACACACACACACACACACACACACACACACACACTCACACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
3UTR-3UTR GCA 90 bp TGTTTCCCAGCCTGCACCCCTCTTGCCACCCTGACTGGTCCCCAGGCACAGTCTTGTGTCTTGCTTGCTTaGACCAGGCAGCAGGCACAT +
Preference number: 2 (lower is better)
Translates to: CFPACTPLATLTGPQAQSCVLLA*TRQQAH
Trigger: ATGTGCCTGCTGCCTGGTGCAAGCAAGCAAGACACA...AGACTGTGCCTGGGGACCAGTCAGGGTGGCAAGAGGGGTGCAGGCTGGGAAACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
3UTR CAA 90 bp GTTAAGTCTCAGTCAGGGATAGCTGCTGTGGGTGGTCTATCCTTTTaGGTCCAATGGGCATCACGAGTTTCGGAGAGGACAGGGCCAGGC +
Preference number: 2 (lower is better)
Translates to: VKSQSGIAAVGGLSF*VQWASRVSERTGPG
Trigger: GCCTGGCCCTGTCCTCTCCGAAACTCGTGATGCCCATTGGACCAAAAAGGATAGACCACCCACAGCAGCTATCCCTGACTGAGACTTAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
3UTR CAA 90 bp GTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTaGCTTGCTTGCACCAGGCAGCAGGCACATTACAGTTTACATGGA +
Preference number: 2 (lower is better)
Translates to: VCECVCVCVCVCVCV*LACTRQQAHYSLHG
Trigger: TCCATGTAAACTGTAATGTGCCTGCTGCCTGGTGCAAGCAAGCAAGACACACACACACACACACACACACACACACACACACTCACACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
3UTR CAA 90 bp GTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTGCTaGCTTGCACCAGGCAGCAGGCACATTACAGTTTACATGGAAGTT +
Preference number: 2 (lower is better)
Translates to: VSVCVCVCVCVCVSC*LAPGSRHITVYMEV
Trigger: AACTTCCATGTAAACTGTAATGTGCCTGCTGCCTGGTGCAAGCAAGCAAGACACACACACACACACACACACACACACACACACACTCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
3UTR CAA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTGCTTGCTaGCACCAGGCAGCAGGCACATTACAGTTTACATGGAAGTTAGTA +
Preference number: 2 (lower is better)
Translates to: VCVCVCVCVCVCLAC*HQAAGTLQFTWKLV
Trigger: TACTAACTTCCATGTAAACTGTAATGTGCCTGCTGCCTGGTGCAAGCAAGCAAGACACACACACACACACACACACACACACACACACAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
3UTR-3UTR CCA 90 bp GGCAGCAGGCACATTACAGTTTACATGGAAGTTAGTATATCTACTGTCTCGGCCGATAGCTGCTGTGGGTaGTCTATCCTTTTTGGTCCA +
Preference number: 2 (lower is better)
Translates to: GSRHITVYMEVSISTVSADSCCG*SILFGP
Trigger: TGGACCAAAAAGGATAGACCACCCACAGCAGCTATC...GGCCGAGACAGTAGATATACTAACTTCCATGTAAACTGTAATGTGCCTGCTGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
3UTR GCA 72 bp ACCTGCGGCCTCCCCAAGCTGTCCCTGTGGGCCAGGTaGTGTATGCAGCGGCCCCTGGTTGTGCACATATGT +
Preference number: 3 (lower is better)
Translates to: TCGLPKLSLWAR*CMQRPLVVHIC
Trigger: ACATATGTGCACAACCAGGGGCCGCTGCATACAGCACCTGGCCCACAGGGACAGCTTGGGGAGGCCGCAGGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
3UTR-3UTR CAA 90 bp GTCAGGGATAGCTGCTGTGGGTGGTCTATCCTTTTTGGTCCAATGGGCATCACGCAGGGCCAGGCTTCCTaGGGCCCTGCCAAAGGGTGG +
Preference number: 3 (lower is better)
Translates to: VRDSCCGWSILFGPMGITQGQAS*GPAKGW
Trigger: CCACCCTTTGGCAGGGCCCAAGGAAGCCTGGCCCTG...CGTGATGCCCATTGGACCAAAAAGGATAGACCACCCACAGCAGCTATCCCTGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
3UTR GCA 72 bp GCCTCCCCAAGCTGTCCCTGTGGGCCAGGTGCTGTATaGAGCGGCCCCTGGTTGTGCACATATGTTGGATTT +
Preference number: 3 (lower is better)
Translates to: ASPSCPCGPGAV*SGPWLCTYVGF
Trigger: AAATCCAACATATGTGCACAACCAGGGGCCGCTGCATACAGCACCTGGCCCACAGGGACAGCTTGGGGAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
3UTR GCA 72 bp TACATGGAAGTTAGTATATCTACTGTCTCGGCCACCTaGGGCCTCCCCAAGCTGTCCCTGTGGGCCAGGTGC +
Preference number: 3 (lower is better)
Translates to: YMEVSISTVSAT*GLPKLSLWARC
Trigger: GCACCTGGCCCACAGGGACAGCTTGGGGAGGCCGCAGGTGGCCGAGACAGTAGATATACTAACTTCCATGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
3UTR GCA 72 bp ACTAGAGTCTCACAGGCTCCAGATGCTCCACCCCTCTaGACTCCACAGCCTGGGAGATCATATTTAGGGGGT +
Preference number: 3 (lower is better)
Translates to: TRVSQAPDAPPL*TPQPGRSYLGG
Trigger: ACCCCCTAAATATGATCTCCCAGGCTGTGGAGTGCAGAGGGGTGGAGCATCTGGAGCCTGTGAGACTCTAGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
3UTR CCA 72 bp ATAGCTGCTGTGGGTGGTCTATCCTTTTTGGTCCAATaGGCATCACGAGTTTCGGAGAGGACAGGGCCAGGC +
Preference number: 3 (lower is better)
Translates to: IAAVGGLSFLVQ*ASRVSERTGPG
Trigger: GCCTGGCCCTGTCCTCTCCGAAACTCGTGATGCCCATTGGACCAAAAAGGATAGACCACCCACAGCAGCTAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
3UTR CCA 72 bp GAACAGCTACAGTGTACAATAAAGATGGGGTCGAGGTaGAGGGACCACACAATGTTTCCCAGCCTGCACCCC +
Preference number: 3 (lower is better)
Translates to: EQLQCTIKMGSR*RDHTMFPSLHP
Trigger: GGGGTGCAGGCTGGGAAACATTGTGTGGTCCCTCCACCTCGACCCCATCTTTATTGTACACTGTAGCTGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
3UTR-3UTR CAA 90 bp TGTTTCCCAGCCTGCACCCCTCTTGCCACCCTGACTGGTCCCCAGGCACAGTCTGGTTGTGCACATATGTaGGATTTAGTGTTAAGTCTC +
Preference number: 3 (lower is better)
Translates to: CFPACTPLATLTGPQAQSGCAHM*DLVLSL
Trigger: GAGACTTAACACTAAATCCAACATATGTGCACAACC...AGACTGTGCCTGGGGACCAGTCAGGGTGGCAAGAGGGGTGCAGGCTGGGAAACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
3UTR CCA 72 bp TGTCCCTGTGGGCCAGGTGCTGTATGCAGCGGCCCCTaGTTGTGCACATATGTTGGATTTAGTGTTAAGTCT +
Preference number: 3 (lower is better)
Translates to: CPCGPGAVCSGP*LCTYVGFSVKS
Trigger: AGACTTAACACTAAATCCAACATATGTGCACAACCAGGGGCCGCTGCATACAGCACCTGGCCCACAGGGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
3UTR GCA 72 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTaGTTGCTTGCACCAGGCAGCAGGCACATTACAGTT +
Preference number: 3 (lower is better)
Translates to: VCVCVCVCVCVS*LLAPGSRHITV
Trigger: AACTGTAATGTGCCTGCTGCCTGGTGCAAGCAAGCAAGACACACACACACACACACACACACACACACACAC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
3UTR GCA 72 bp GTGTGTGTGTGTGTGTGTGTGTGTGTCTTGCTTGCTTaGACCAGGCAGCAGGCACATTACAGTTTACATGGA +
Preference number: 3 (lower is better)
Translates to: VCVCVCVCVLLA*TRQQAHYSLHG
Trigger: TCCATGTAAACTGTAATGTGCCTGCTGCCTGGTGCAAGCAAGCAAGACACACACACACACACACACACACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
3UTR GCA 72 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTGCTTaGTTGCACCAGGCAGCAGGCACATTACAGTTTACA +
Preference number: 3 (lower is better)
Translates to: VCVCVCVCVCLA*LHQAAGTLQFT
Trigger: TGTAAACTGTAATGTGCCTGCTGCCTGGTGCAAGCAAGCAAGACACACACACACACACACACACACACACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
3UTR CCA 72 bp TGCTTGCACCAGGCAGCAGGCACATTACAGTTTACATaGAAGTTAGTATATCTACTGTCTCGGCCACCTGCG +
Preference number: 3 (lower is better)
Translates to: CLHQAAGTLQFT*KLVYLLSRPPA
Trigger: CGCAGGTGGCCGAGACAGTAGATATACTAACTTCCATGTAAACTGTAATGTGCCTGCTGCCTGGTGCAAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
3UTR GCA 72 bp GACACAGTTTTCCGAAGTCCCATGTGTGCATGTGTGTaGATGTGCATGTGTGAGTGTGTGCAAATGTTTGTG +
Preference number: 3 (lower is better)
Translates to: DTVFRSPMCACV*MCMCECVQMFV
Trigger: CACAAACATTTGCACACACTCACACATGCACATGCACACACATGCACACATGGGACTTCGGAAAACTGTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CCA 90 bp TTCGGAGAGGACAGGGCCAGGCTTCCTTGGGCCCTGCCAAAGGGTGGAGGGAGGAGGATGCTACGTTGGTaGCCGTGGCGGCCCTGGCCC +
Preference number: 4 (lower is better)
Translates to: FGEDRARLPWALPKGGGRRMLRW*PWRPWP
Trigger: GGGCCAGGGCCGCCACGGCCACCAACGTAGCATCCT...CCTCCCTCCACCCTTTGGCAGGGCCCAAGGAAGCCTGGCCCTGTCCTCTCCGAA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR GCA 90 bp GTCCAATGGGCATCACGAGTTTCGGAGAGGACAGGGCCAGGCTTCCTTGGGCCCTCAGCTCACAGCCTCTaGGCTCCTGCGGCTCCCCCG +
Preference number: 4 (lower is better)
Translates to: VQWASRVSERTGPGFLGPSAHSL*APAAPP
Trigger: CGGGGGAGCCGCAGGAGCGCAGAGGCTGTGAGCTGA...GGGCCCAAGGAAGCCTGGCCCTGTCCTCTCCGAAACTCGTGATGCCCATTGGAC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR GCA 90 bp TTCGGAGAGGACAGGGCCAGGCTTCCTTGGGCCCTGCCAAAGGGTGGAGGGAGGGGGGACAGGAAGCTGTaGTTGCTGGCCAGAGGCTCG +
Preference number: 4 (lower is better)
Translates to: FGEDRARLPWALPKGGGRGDRKL*LLARGS
Trigger: CGAGCCTCTGGCCAGCAAGCACAGCTTCCTGTCCCC...CCTCCCTCCACCCTTTGGCAGGGCCCAAGGAAGCCTGGCCCTGTCCTCTCCGAA
66% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR GCA 90 bp TTCGGAGAGGACAGGGCCAGGCTTCCTTGGGCCCTGCCAAAGGGTGGAGGGAGGTGCTTGGGGATGCCCTaGAGGTGTACTCGGGGCTGG +
Preference number: 4 (lower is better)
Translates to: FGEDRARLPWALPKGGGRCLGMP*RCTRGW
Trigger: CCAGCCCCGAGTACACCTGCAGGGCATCCCCAAGCA...CCTCCCTCCACCCTTTGGCAGGGCCCAAGGAAGCCTGGCCCTGTCCTCTCCGAA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR TCA 90 bp TGTTTCCCAGCCTGCACCCCTCTTGCCACCCTGACTGGTCCCCAGGCACAGTCTCCGCGGGTGTCACAGTaGGGATGGTCTCGGGCACAG +
Preference number: 4 (lower is better)
Translates to: CFPACTPLATLTGPQAQSPRVSQ*GWSRAQ
Trigger: CTGTGCCCGAGACCATCCTCACTGTGACACCCGCGG...AGACTGTGCCTGGGGACCAGTCAGGGTGGCAAGAGGGGTGCAGGCTGGGAAACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR TCA 90 bp TGTTTCCCAGCCTGCACCCCTCTTGCCACCCTGACTGGTCCCCAGGCACAGTCTGTGAGAGCCGGGGTATaGGTGCCGATGCTCGCCGTA +
Preference number: 4 (lower is better)
Translates to: CFPACTPLATLTGPQAQSVRAGV*VPMLAV
Trigger: TACGGCGAGCATCGGCACTCATACCCCGGCTCTCAC...AGACTGTGCCTGGGGACCAGTCAGGGTGGCAAGAGGGGTGCAGGCTGGGAAACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CCA 90 bp GTCCAATGGGCATCACGAGTTTCGGAGAGGACAGGGCCAGGCTTCCTTGGGCCCCCCAGCTGCAGCACCTaGAGGTTGAACTGGCCGGAG +
Preference number: 4 (lower is better)
Translates to: VQWASRVSERTGPGFLGPPSCST*RLNWPE
Trigger: CTCCGGCCAGTTCAACCTCCAGGTGCTGCAGCTGGG...GGGCCCAAGGAAGCCTGGCCCTGTCCTCTCCGAAACTCGTGATGCCCATTGGAC
63% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CCA 90 bp TGTTTCCCAGCCTGCACCCCTCTTGCCACCCTGACTGGTCCCCAGGCACAGTCTCGATGCTCGCCGTACTaGCGACTCTTGTCGGCCTCC +
Preference number: 4 (lower is better)
Translates to: CFPACTPLATLTGPQAQSRCSPY*RLLSAS
Trigger: GGAGGCCGACAAGAGTCGCCAGTACGGCGAGCATCG...AGACTGTGCCTGGGGACCAGTCAGGGTGGCAAGAGGGGTGCAGGCTGGGAAACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR GCA 90 bp TCCAATGGGCATCACGAGTTTCGGAGAGGACAGGGCCAGGCTTCCTTGGGCCCTCTGCGAAGGTGCCGCTaGCCAGCTGCTGGATGCGAT +
Preference number: 4 (lower is better)
Translates to: SNGHHEFRRGQGQASLGPLRRCR*PAAGCD
Trigger: ATCGCATCCAGCAGCTGGGCAGCGGCACCTTCGCAG...AGGGCCCAAGGAAGCCTGGCCCTGTCCTCTCCGAAACTCGTGATGCCCATTGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR GCA 90 bp TGTTTCCCAGCCTGCACCCCTCTTGCCACCCTGACTGGTCCCCAGGCACAGTCTTCACCAGCGGCGTGGTaGCATCTCCGGAGAAGCACT +
Preference number: 4 (lower is better)
Translates to: CFPACTPLATLTGPQAQSSPAAW*HLRRST
Trigger: AGTGCTTCTCCGGAGATGGCACCACGCCGCTGGTGA...AGACTGTGCCTGGGGACCAGTCAGGGTGGCAAGAGGGGTGCAGGCTGGGAAACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR GCA 90 bp GTCCAATGGGCATCACGAGTTTCGGAGAGGACAGGGCCAGGCTTCCTTGGGCCCGGGTATGAGTGCCGATaGTCGCCGTACTGGCGACTC +
Preference number: 4 (lower is better)
Translates to: VQWASRVSERTGPGFLGPGYECR*SPYWRL
Trigger: GAGTCGCCAGTACGGCGAGCATCGGCACTCATACCC...GGGCCCAAGGAAGCCTGGCCCTGTCCTCTCCGAAACTCGTGATGCCCATTGGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CCA 90 bp GTCCAATGGGCATCACGAGTTTCGGAGAGGACAGGGCCAGGCTTCCTTGGGCCCCACACACCGAGAGCTTaGTCAGGCCTGCGAAGGTGC +
Preference number: 4 (lower is better)
Translates to: VQWASRVSERTGPGFLGPHTPRA*SGLRRC
Trigger: GCACCTTCGCAGGCCTGACCAAGCTCTCGGTGTGTG...GGGCCCAAGGAAGCCTGGCCCTGTCCTCTCCGAAACTCGTGATGCCCATTGGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR TCA 90 bp TGGTCCCCAGGCACAGTCTTCACCTCCCCACTAGAGTCTCACAGGCTCCAGATGTCTGTGTGGCGTTGGTaGAGGCAGCCAGCCAGCGCA +
Preference number: 4 (lower is better)
Translates to: WSPGTVFTSPLESHRLQMSVWRW*RQPASA
Trigger: TGCGCTGGCTGGCTGCCTTCACCAACGCCACACAGA...CATCTGGAGCCTGTGAGACTCTAGTGGGGAGGTGAAGACTGTGCCTGGGGACCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CCA 90 bp TCCAATGGGCATCACGAGTTTCGGAGAGGACAGGGCCAGGCTTCCTTGGGCCCTCCTGATTTGGCGCCCTaGAAGGAGGTGGACTCGGAC +
Preference number: 4 (lower is better)
Translates to: SNGHHEFRRGQGQASLGPPDLAP*KEVDSD
Trigger: GTCCGAGTCCACCTCCTTCCAGGGCGCCAAATCAGG...AGGGCCCAAGGAAGCCTGGCCCTGTCCTCTCCGAAACTCGTGATGCCCATTGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CCA 90 bp TGGTCCCCAGGCACAGTCTTCACCTCCCCACTAGAGTCTCACAGGCTCCAGATGACACGGCCCCTGATTTaGCGCCCTGGAAGGAGGTGG +
Preference number: 4 (lower is better)
Translates to: WSPGTVFTSPLESHRLQMTRPLI*RPGRRW
Trigger: CCACCTCCTTCCAGGGCGCCAAATCAGGGGCCGTGT...CATCTGGAGCCTGTGAGACTCTAGTGGGGAGGTGAAGACTGTGCCTGGGGACCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR TCA 90 bp GTCCAATGGGCATCACGAGTTTCGGAGAGGACAGGGCCAGGCTTCCTTGGGCCCCCATCACCACCTCGATaGGGTTGGCCTGTAGGTACA +
Preference number: 4 (lower is better)
Translates to: VQWASRVSERTGPGFLGPPSPPR*GWPVGT
Trigger: TGTACCTACAGGCCAACCTCATCGAGGTGGTGATGG...GGGCCCAAGGAAGCCTGGCCCTGTCCTCTCCGAAACTCGTGATGCCCATTGGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR GCA 90 bp GTCCAATGGGCATCACGAGTTTCGGAGAGGACAGGGCCAGGCTTCCTTGGGCCCCAGGAGGAAGTAGCCTaGGTAGACAGGAGGAGACTC +
Preference number: 4 (lower is better)
Translates to: VQWASRVSERTGPGFLGPQEEVA*VDRRRL
Trigger: GAGTCTCCTCCTGTCTACGCAGGCTACTTCCTCCTG...GGGCCCAAGGAAGCCTGGCCCTGTCCTCTCCGAAACTCGTGATGCCCATTGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR GCA 90 bp TGGTCCCCAGGCACAGTCTTCACCTCCCCACTAGAGTCTCACAGGCTCCAGATGACACTGTGGTGCCGCTaGAGGCCACCATGGCCAAAG +
Preference number: 4 (lower is better)
Translates to: WSPGTVFTSPLESHRLQMTLWCR*RPPWPK
Trigger: CTTTGGCCATGGTGGCCTGCAGCGGCACCACAGTGT...CATCTGGAGCCTGTGAGACTCTAGTGGGGAGGTGAAGACTGTGCCTGGGGACCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CCA 90 bp TCTATCCTTTTTGGTCCAATGGGCATCACGAGTTTCGGAGAGGACAGGGCCAGGCCAAGCAGCGGACCCTaGGTCAGGGGAGCCAGGCCA +
Preference number: 4 (lower is better)
Translates to: SILFGPMGITSFGEDRARPSSGP*VRGARP
Trigger: TGGCCTGGCTCCCCTGACCCAGGGTCCGCTGCTTGG...CCTGGCCCTGTCCTCTCCGAAACTCGTGATGCCCATTGGACCAAAAAGGATAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR GCA 90 bp GTCCAATGGGCATCACGAGTTTCGGAGAGGACAGGGCCAGGCTTCCTTGGGCCCTGTAGGAGCCCTCTGTaGACACAGACTGAAGCTTGC +
Preference number: 4 (lower is better)
Translates to: VQWASRVSERTGPGFLGPCRSPL*TQTEAC
Trigger: GCAAGCTTCAGTCTGTGTGCACAGAGGGCTCCTACA...GGGCCCAAGGAAGCCTGGCCCTGTCCTCTCCGAAACTCGTGATGCCCATTGGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR TCA 90 bp GTCCAATGGGCATCACGAGTTTCGGAGAGGACAGGGCCAGGCTTCCTTGGGCCCTGGAGAGATCTATGTTaGCGATGTTGGGACACTCCC +
Preference number: 4 (lower is better)
Translates to: VQWASRVSERTGPGFLGPWRDLC*RCWDTP
Trigger: GGGAGTGTCCCAACATCGTCAACATAGATCTCTCCA...GGGCCCAAGGAAGCCTGGCCCTGTCCTCTCCGAAACTCGTGATGCCCATTGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR TCA 90 bp TCTATCCTTTTTGGTCCAATGGGCATCACGAGTTTCGGAGAGGACAGGGCCAGGAGGCGGATCTCCTCCTaGGGCTGGGTCAGCTTGGAC +
Preference number: 4 (lower is better)
Translates to: SILFGPMGITSFGEDRARRRISS*GWVSLD
Trigger: GTCCAAGCTGACCCAGCCTCAGGAGGAGATCCGCCT...CCTGGCCCTGTCCTCTCCGAAACTCGTGATGCCCATTGGACCAAAAAGGATAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR GCA 90 bp TCTATCCTTTTTGGTCCAATGGGCATCACGAGTTTCGGAGAGGACAGGGCCAGGGAGCCGGGGTATGAGTaGCGATGCTCGCCGTACTGG +
Preference number: 4 (lower is better)
Translates to: SILFGPMGITSFGEDRAREPGYE*RCSPYW
Trigger: CCAGTACGGCGAGCATCGGCACTCATACCCCGGCTC...CCTGGCCCTGTCCTCTCCGAAACTCGTGATGCCCATTGGACCAAAAAGGATAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CCA 90 bp TCATATTTAGGGGGTGCCATGAAGCTGGCTAGACTTGGTCACATGCCCCACGCTCCGCGTGCAGTAACGTaGCGGCTGCCACAAGTACCC +
Preference number: 4 (lower is better)
Translates to: SYLGGAMKLARLGHMPHAPRAVT*RLPQVP
Trigger: GGGTACTTGTGGCAGCCGCCACGTTACTGCACGCGG...AGCGTGGGGCATGTGACCAAGTCTAGCCAGCTTCATGGCACCCCCTAAATATGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CCA 90 bp GTCAGGGATAGCTGCTGTGGGTGGTCTATCCTTTTTGGTCCAATGGGCATCACGCTAAGGATGCTACGTTaGTGGCCGTGGCGGCCCTGG +
Preference number: 4 (lower is better)
Translates to: VRDSCCGWSILFGPMGITLRMLR*WPWRPW
Trigger: CCAGGGCCGCCACGGCCACCAACGTAGCATCCTTAG...CGTGATGCCCATTGGACCAAAAAGGATAGACCACCCACAGCAGCTATCCCTGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CCA 90 bp TCCAATGGGCATCACGAGTTTCGGAGAGGACAGGGCCAGGCTTCCTTGGGCCCTCTTCCTTGGCAATGGTaGAGATCTCCGCTACTGAGC +
Preference number: 4 (lower is better)
Translates to: SNGHHEFRRGQGQASLGPLPWQW*RSPLLS
Trigger: GCTCAGTAGCGGAGATCTCCACCATTGCCAAGGAAG...AGGGCCCAAGGAAGCCTGGCCCTGTCCTCTCCGAAACTCGTGATGCCCATTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CCA 90 bp TGTGTGTGTGTGTGTGTGTCTTGCTTGCTTGCACCAGGCAGCAGGCACATTACACCAAGCCCTCGTGAGTaGGTGGAGGTGGTGGAGGGG +
Preference number: 4 (lower is better)
Translates to: CVCVCVSCLLAPGSRHITPSPRE*VEVVEG
Trigger: CCCCTCCACCACCTCCACCCACTCACGAGGGCTTGG...TGTAATGTGCCTGCTGCCTGGTGCAAGCAAGCAAGACACACACACACACACACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CCA 90 bp GTCCAATGGGCATCACGAGTTTCGGAGAGGACAGGGCCAGGCTTCCTTGGGCCCAGGTGTACTCGGGGCTaGATGAATAGCTCAGGTTGT +
Preference number: 4 (lower is better)
Translates to: VQWASRVSERTGPGFLGPRCTRG*MNSSGC
Trigger: ACAACCTGAGCTATTCATCCAGCCCCGAGTACACCT...GGGCCCAAGGAAGCCTGGCCCTGTCCTCTCCGAAACTCGTGATGCCCATTGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR TCA 90 bp TCTATCCTTTTTGGTCCAATGGGCATCACGAGTTTCGGAGAGGACAGGGCCAGGTCCGTCGGCTCAGTCTaGGACGCTCCCAGATGCTTG +
Preference number: 4 (lower is better)
Translates to: SILFGPMGITSFGEDRARSVGSV*DAPRCL
Trigger: CAAGCATCTGGGAGCGTCTCAGACTGAGCCGACGGA...CCTGGCCCTGTCCTCTCCGAAACTCGTGATGCCCATTGGACCAAAAAGGATAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR GCA 90 bp TCTATCCTTTTTGGTCCAATGGGCATCACGAGTTTCGGAGAGGACAGGGCCAGGAACGGGCTCGGCAGCTaGACCATGATGGTGGCCGAA +
Preference number: 4 (lower is better)
Translates to: SILFGPMGITSFGEDRARNGLGS*TMMVAE
Trigger: TTCGGCCACCATCATGGTGCAGCTGCCGAGCCCGTT...CCTGGCCCTGTCCTCTCCGAAACTCGTGATGCCCATTGGACCAAAAAGGATAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CCA 90 bp TCATATTTAGGGGGTGCCATGAAGCTGGCTAGACTTGGTCACATGCCCCACGCTCACTGCACCCGGTCATaGGTCTGTGTGGCGTTGGTG +
Preference number: 4 (lower is better)
Translates to: SYLGGAMKLARLGHMPHAHCTRS*VCVALV
Trigger: CACCAACGCCACACAGACCCATGACCGGGTGCAGTG...AGCGTGGGGCATGTGACCAAGTCTAGCCAGCTTCATGGCACCCCCTAAATATGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CCA 90 bp TCCAATGGGCATCACGAGTTTCGGAGAGGACAGGGCCAGGCTTCCTTGGGCCCTGCAGGTCCTCGTCTTTaGCAAACTGAACCTTCTTGC +
Preference number: 4 (lower is better)
Translates to: SNGHHEFRRGQGQASLGPAGPRL*QTEPSC
Trigger: GCAAGAAGGTTCAGTTTGCCAAAGACGAGGACCTGC...AGGGCCCAAGGAAGCCTGGCCCTGTCCTCTCCGAAACTCGTGATGCCCATTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR TCA 90 bp TCTATCCTTTTTGGTCCAATGGGCATCACGAGTTTCGGAGAGGACAGGGCCAGGAGGTGGACTCGGACTTaGGGGCGTCGATGCAGTTGT +
Preference number: 4 (lower is better)
Translates to: SILFGPMGITSFGEDRARRWTRT*GRRCSC
Trigger: ACAACTGCATCGACGCCCTCAAGTCCGAGTCCACCT...CCTGGCCCTGTCCTCTCCGAAACTCGTGATGCCCATTGGACCAAAAAGGATAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR TCA 90 bp GTAAGACACAGTTTTCCGAAGTCCCATGTGTGCATGTGTGTGCATGTGCATGTGCCACCCAAGCCCTCGTaGGTGGGTGGAGGTGGTGGA +
Preference number: 4 (lower is better)
Translates to: VRHSFPKSHVCMCVHVHVPPKPS*VGGGGG
Trigger: TCCACCACCTCCACCCACTCACGAGGGCTTGGGTGG...CACATGCACATGCACACACATGCACACATGGGACTTCGGAAAACTGTGTCTTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CCA 90 bp TGGTCCCCAGGCACAGTCTTCACCTCCCCACTAGAGTCTCACAGGCTCCAGATGATGGTGGCCGAATTTTaGGTCAGCTGCTTGACCTTC +
Preference number: 4 (lower is better)
Translates to: WSPGTVFTSPLESHRLQMMVAEF*VSCLTF
Trigger: GAAGGTCAAGCAGCTGACCCAAAATTCGGCCACCAT...CATCTGGAGCCTGTGAGACTCTAGTGGGGAGGTGAAGACTGTGCCTGGGGACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CCA 90 bp TCATATTTAGGGGGTGCCATGAAGCTGGCTAGACTTGGTCACATGCCCCACGCTGTCACTGGTGGCGGCTaGCAGGTAGGGTATTCGAGT +
Preference number: 4 (lower is better)
Translates to: SYLGGAMKLARLGHMPHAVTGGG*QVGYSS
Trigger: ACTCGAATACCCTACCTGCCAGCCGCCACCAGTGAC...AGCGTGGGGCATGTGACCAAGTCTAGCCAGCTTCATGGCACCCCCTAAATATGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CCA 90 bp TGTGTGTGTGTGTGTGTGTCTTGCTTGCTTGCACCAGGCAGCAGGCACATTACATGTAGTTCCCCTTGGTaGCCTTGGGGGTCTCGCTGC +
Preference number: 4 (lower is better)
Translates to: CVCVCVSCLLAPGSRHITCSSPW*PWGSRC
Trigger: GCAGCGAGACCCCCAAGGCCACCAAGGGGAACTACA...TGTAATGTGCCTGCTGCCTGGTGCAAGCAAGCAAGACACACACACACACACACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CCA 90 bp TCTATCCTTTTTGGTCCAATGGGCATCACGAGTTTCGGAGAGGACAGGGCCAGGACGCTCCCAGATGCTTaGGGATGCCCTGCAGGTGTA +
Preference number: 4 (lower is better)
Translates to: SILFGPMGITSFGEDRARTLPDA*GCPAGV
Trigger: TACACCTGCAGGGCATCCCCAAGCATCTGGGAGCGT...CCTGGCCCTGTCCTCTCCGAAACTCGTGATGCCCATTGGACCAAAAAGGATAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR GCA 90 bp GGCAGCAGGCACATTACAGTTTACATGGAAGTTAGTATATCTACTGTCTCGGCCGAGCTTGGTCAGGCCTaGGAAGGTGCCGCTGCCCAG +
Preference number: 4 (lower is better)
Translates to: GSRHITVYMEVSISTVSAELGQA*EGAAAQ
Trigger: CTGGGCAGCGGCACCTTCGCAGGCCTGACCAAGCTC...GGCCGAGACAGTAGATATACTAACTTCCATGTAAACTGTAATGTGCCTGCTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR GCA 90 bp GGCAGCAGGCACATTACAGTTTACATGGAAGTTAGTATATCTACTGTCTCGGCCGACAGCAGCACCAGCTaGGGCTCAGCCGCAGACACG +
Preference number: 4 (lower is better)
Translates to: GSRHITVYMEVSISTVSADSSTS*GSAADT
Trigger: CGTGTCTGCGGCTGAGCCGCAGCTGGTGCTGCTGTC...GGCCGAGACAGTAGATATACTAACTTCCATGTAAACTGTAATGTGCCTGCTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR GCA 90 bp GGCAGCAGGCACATTACAGTTTACATGGAAGTTAGTATATCTACTGTCTCGGCCCCTCAGCCCGGAAGGTaGGAGGGCTGCGTGCAGAAC +
Preference number: 4 (lower is better)
Translates to: GSRHITVYMEVSISTVSAPQPGR*EGCVQN
Trigger: GTTCTGCACGCAGCCCTCGCACCTTCCGGGCTGAGG...GGCCGAGACAGTAGATATACTAACTTCCATGTAAACTGTAATGTGCCTGCTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CCA 90 bp ACATATGTTGGATTTAGTGTTAAGTCTCAGTCAGGGATAGCTGCTGTGGGTGGTAGCCAGCAGTCACCTTaGGCCAGCCCACCCGCGTGC +
Preference number: 4 (lower is better)
Translates to: TYVGFSVKSQSGIAAVGGSQQSP*ASPPAC
Trigger: GCACGCGGGTGGGCTGGCCCAAGGTGACTGCTGGCT...ACCACCCACAGCAGCTATCCCTGACTGAGACTTAACACTAAATCCAACATATGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CCA 90 bp GTAAGACACAGTTTTCCGAAGTCCCATGTGTGCATGTGTGTGCATGTGCATGTGACTGCTCCACGTCACTaGTGGCGGCTGGCAGGTAGG +
Preference number: 4 (lower is better)
Translates to: VRHSFPKSHVCMCVHVHVTAPRH*WRLAGR
Trigger: CCTACCTGCCAGCCGCCACCAGTGACGTGGAGCAGT...CACATGCACATGCACACACATGCACACATGGGACTTCGGAAAACTGTGTCTTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CCA 90 bp GGCAGCAGGCACATTACAGTTTACATGGAAGTTAGTATATCTACTGTCTCGGCCGCAGCCTCCACACTGTaGTGCCGCTGCAGGCCACCA +
Preference number: 4 (lower is better)
Translates to: GSRHITVYMEVSISTVSAAASTL*CRCRPP
Trigger: TGGTGGCCTGCAGCGGCACCACAGTGTGGAGGCTGC...GGCCGAGACAGTAGATATACTAACTTCCATGTAAACTGTAATGTGCCTGCTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CCA 90 bp TCATATTTAGGGGGTGCCATGAAGCTGGCTAGACTTGGTCACATGCCCCACGCTCAGGTTGTGGTACTGTaGGGACAGCTGCGAGTAGAC +
Preference number: 4 (lower is better)
Translates to: SYLGGAMKLARLGHMPHAQVVVL*GQLRVD
Trigger: GTCTACTCGCAGCTGTCCCCACAGTACCACAACCTG...AGCGTGGGGCATGTGACCAAGTCTAGCCAGCTTCATGGCACCCCCTAAATATGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
3UTR CAA 72 bp CCCTGTGGGCCAGGTGCTGTATGCAGCGGCCCCTGGTaGTGCACATATGTTGGATTTAGTGTTAAGTCTCAG +
Preference number: 4 (lower is better)
Translates to: PCGPGAVCSGPW*CTYVGFSVKSQ
Trigger: CTGAGACTTAACACTAAATCCAACATATGTGCACAACCAGGGGCCGCTGCATACAGCACCTGGCCCACAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR GCA 90 bp ACATATGTTGGATTTAGTGTTAAGTCTCAGTCAGGGATAGCTGCTGTGGGTGGTGCCTCCACACTGTGGTaGCGCTGCAGGCCACCATGG +
Preference number: 4 (lower is better)
Translates to: TYVGFSVKSQSGIAAVGGASTLW*RCRPPW
Trigger: CCATGGTGGCCTGCAGCGGCACCACAGTGTGGAGGC...ACCACCCACAGCAGCTATCCCTGACTGAGACTTAACACTAAATCCAACATATGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR GCA 90 bp ACATATGTTGGATTTAGTGTTAAGTCTCAGTCAGGGATAGCTGCTGTGGGTGGTCTGGGGCCTTATGTGTaGCGGTGGCCTCAGCCCGGA +
Preference number: 4 (lower is better)
Translates to: TYVGFSVKSQSGIAAVGGLGPYV*RWPQPG
Trigger: TCCGGGCTGAGGCCACCGGCACACATAAGGCCCCAG...ACCACCCACAGCAGCTATCCCTGACTGAGACTTAACACTAAATCCAACATATGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CCA 90 bp GGCAGCAGGCACATTACAGTTTACATGGAAGTTAGTATATCTACTGTCTCGGCCGCTCCACGTCACTGGTaGCGGCTGGCAGGTAGGGTA +
Preference number: 4 (lower is better)
Translates to: GSRHITVYMEVSISTVSAAPRHW*RLAGRV
Trigger: TACCCTACCTGCCAGCCGCCACCAGTGACGTGGAGC...GGCCGAGACAGTAGATATACTAACTTCCATGTAAACTGTAATGTGCCTGCTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CCA 90 bp CTTGCACCAGGCAGCAGGCACATTACAGTTTACATGGAAGTTAGTATATCTACTGCCCTCGTGAGTGGGTaGAGGTGGTGGAGGGGCAGG +
Preference number: 4 (lower is better)
Translates to: LAPGSRHITVYMEVSISTALVSG*RWWRGR
Trigger: CCTGCCCCTCCACCACCTCCACCCACTCACGAGGGC...AGTAGATATACTAACTTCCATGTAAACTGTAATGTGCCTGCTGCCTGGTGCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR GCA 90 bp GTCAGGGATAGCTGCTGTGGGTGGTCTATCCTTTTTGGTCCAATGGGCATCACGTGCCCAGCTGCTGGATaGGATTCATGGAGAGATCTA +
Preference number: 4 (lower is better)
Translates to: VRDSCCGWSILFGPMGITCPAAG*DSWRDL
Trigger: TAGATCTCTCCATGAATCGCATCCAGCAGCTGGGCA...CGTGATGCCCATTGGACCAAAAAGGATAGACCACCCACAGCAGCTATCCCTGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR GCA 90 bp ACATATGTTGGATTTAGTGTTAAGTCTCAGTCAGGGATAGCTGCTGTGGGTGGTCTCAGGGAGGCGTACTaGACGCTGCGGATACGGTTC +
Preference number: 4 (lower is better)
Translates to: TYVGFSVKSQSGIAAVGGLREAY*TLRIRF
Trigger: GAACCGTATCCGCAGCGTGCAGTACGCCTCCCTGAG...ACCACCCACAGCAGCTATCCCTGACTGAGACTTAACACTAAATCCAACATATGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CCA 90 bp ACATATGTTGGATTTAGTGTTAAGTCTCAGTCAGGGATAGCTGCTGTGGGTGGTGGAAGCTGTGCTTGCTaGCCAGAGGCTCGGACAGCA +
Preference number: 4 (lower is better)
Translates to: TYVGFSVKSQSGIAAVGGGSCAC*PEARTA
Trigger: TGCTGTCCGAGCCTCTGGCCAGCAAGCACAGCTTCC...ACCACCCACAGCAGCTATCCCTGACTGAGACTTAACACTAAATCCAACATATGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CCA 90 bp GTAAGACACAGTTTTCCGAAGTCCCATGTGTGCATGTGTGTGCATGTGCATGTGTGTACTTGGTCTCGGTaGCTGGGGCCTTATGTGTGC +
Preference number: 4 (lower is better)
Translates to: VRHSFPKSHVCMCVHVHVCTWSR*LGPYVC
Trigger: GCACACATAAGGCCCCAGCCACCGAGACCAAGTACA...CACATGCACATGCACACACATGCACACATGGGACTTCGGAAAACTGTGTCTTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CCA 90 bp ACATATGTTGGATTTAGTGTTAAGTCTCAGTCAGGGATAGCTGCTGTGGGTGGTTCAGAGGCTCCAGGATaGATGCCTTGCGGCCACCCA +
Preference number: 4 (lower is better)
Translates to: TYVGFSVKSQSGIAAVGGSEAPG*MPCGHP
Trigger: TGGGTGGCCGCAAGGCATCCATCCTGGAGCCTCTGA...ACCACCCACAGCAGCTATCCCTGACTGAGACTTAACACTAAATCCAACATATGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
3UTR CAA 72 bp TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTaGCTTGCTTGCACCAGGCAGCAGGCACATTACAGT +
Preference number: 4 (lower is better)
Translates to: CVCVCVCVCVCV*LACTRQQAHYS
Trigger: ACTGTAATGTGCCTGCTGCCTGGTGCAAGCAAGCAAGACACACACACACACACACACACACACACACACACA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR GCA 90 bp GGCAGCAGGCACATTACAGTTTACATGGAAGTTAGTATATCTACTGTCTCGGCCCTTGTCGCCTCCGCTTaGGCAGGCAGTAATAGACAG +
Preference number: 4 (lower is better)
Translates to: GSRHITVYMEVSISTVSALVASA*AGSNRQ
Trigger: CTGTCTATTACTGCCTGCGCAAGCGGAGGCGACAAG...GGCCGAGACAGTAGATATACTAACTTCCATGTAAACTGTAATGTGCCTGCTGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR GCA 90 bp CTTGCACCAGGCAGCAGGCACATTACAGTTTACATGGAAGTTAGTATATCTACTCCAGATGCTTGGGGATaGCCTGCAGGTGTACTCGGG +
Preference number: 4 (lower is better)
Translates to: LAPGSRHITVYMEVSISTPDAWG*PAGVLG
Trigger: CCCGAGTACACCTGCAGGGCATCCCCAAGCATCTGG...AGTAGATATACTAACTTCCATGTAAACTGTAATGTGCCTGCTGCCTGGTGCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
3UTR CAA 72 bp TGTGTGTGTGTGTGTGTGTGTGTGTGTCTTGCTTGCTaGCACCAGGCAGCAGGCACATTACAGTTTACATGG +
Preference number: 4 (lower is better)
Translates to: CVCVCVCVCLAC*HQAAGTLQFTW
Trigger: CCATGTAAACTGTAATGTGCCTGCTGCCTGGTGCAAGCAAGCAAGACACACACACACACACACACACACACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
3UTR CAA 72 bp TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTGCTaGCTTGCACCAGGCAGCAGGCACATTACAGTTTAC +
Preference number: 4 (lower is better)
Translates to: CVCVCVCVCVSC*LAPGSRHITVY
Trigger: GTAAACTGTAATGTGCCTGCTGCCTGGTGCAAGCAAGCAAGACACACACACACACACACACACACACACACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR TCA 90 bp GGCAGCAGGCACATTACAGTTTACATGGAAGTTAGTATATCTACTGTCTCGGCCGTACTCGGGGCTGGATaGATAGCTCAGGTTGTGGTA +
Preference number: 4 (lower is better)
Translates to: GSRHITVYMEVSISTVSAVLGAG*IAQVVV
Trigger: TACCACAACCTGAGCTATTCATCCAGCCCCGAGTAC...GGCCGAGACAGTAGATATACTAACTTCCATGTAAACTGTAATGTGCCTGCTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR GCA 90 bp GTAAGACACAGTTTTCCGAAGTCCCATGTGTGCATGTGTGTGCATGTGCATGTGAGCAGTAGAAAGGGTTaGTGTAGATCTCACACACCG +
Preference number: 4 (lower is better)
Translates to: VRHSFPKSHVCMCVHVHVSSRKG*CRSHTP
Trigger: CGGTGTGTGAGATCTACAGCAACCCTTTCTACTGCT...CACATGCACATGCACACACATGCACACATGGGACTTCGGAAAACTGTGTCTTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CCA 90 bp TGTGTGTGTGTGTGTGTGTCTTGCTTGCTTGCACCAGGCAGCAGGCACATTACACAGTTGTTAATGATCTaGTTGACTCTGTCCACTTCC +
Preference number: 4 (lower is better)
Translates to: CVCVCVSCLLAPGSRHITQLLMI*LTLSTS
Trigger: GGAAGTGGACAGAGTCAACCAGATCATTAACAACTG...TGTAATGTGCCTGCTGCCTGGTGCAAGCAAGCAAGACACACACACACACACACA
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS GCA 90 bp CAGCCCGGAAGGTGCGAGGGCTGCGTGCAGAACCGCTGGATGAAGTaGTGGCCCTCGGGGGCCCGGGCGCAGCCTCCACACTGTGGTGCC +
Preference number: 5 (lower is better)
Translates to: QPGRCEGCVQNRWMK*WPSGARAQPPHCGA
Trigger: GGCACCACAGTGTGGAGGCTGCGCCCGGGCCCCCGAGGGCCAGCACTTCATCCAGCGGTTCTGCACGCAGCCCTCGCACCTTCCGGGCTG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS TCA 90 bp AGGTGGTGGAGGGGCAGGTGGCTCGGCAGGGTGAGAGCCGGGGTATaGGTGCCGATGCTCGCCGTACTGGCGACTCTTGTCGGCCTCCGC +
Preference number: 5 (lower is better)
Translates to: RWWRGRWLGRVRAGV*VPMLAVLATLVGLR
Trigger: GCGGAGGCCGACAAGAGTCGCCAGTACGGCGAGCATCGGCACTCATACCCCGGCTCTCACCCTGCCGAGCCACCTGCCCCTCCACCACCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS GCA 90 bp GACGAGGTCTCGGGGTCGTGGCCGGGTCAGAGGCTCCAGGATGGATaGCTTGCGGCCACCCAAGCCCTCGTGAGTGGGTGGAGGTGGTGG +
Preference number: 5 (lower is better)
Translates to: DEVSGSWPGQRLQDG*LAATQALVSGWRWW
Trigger: CCACCACCTCCACCCACTCACGAGGGCTTGGGTGGCCGCAAGGCATCCATCCTGGAGCCTCTGACCCGGCCACGACCCCGAGACCTCGTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS TCA 90 bp CTCGGACAGCAGCACCAGCTGCGGCTCAGCCGCAGACACGGCCCCTaGTTTGGCGCCCTGGAAGGAGGTGGACTCGGACTTGAGGGCGTC +
Preference number: 5 (lower is better)
Translates to: LGQQHQLRLSRRHGP*FGALEGGGLGLEGV
Trigger: GACGCCCTCAAGTCCGAGTCCACCTCCTTCCAGGGCGCCAAATCAGGGGCCGTGTCTGCGGCTGAGCCGCAGCTGGTGCTGCTGTCCGAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CCA 90 bp TCAGCCAGCAGTCACCTTGGGCCAGCCCACCCGCGTGCAGTAACGTaGCGGCTGCCACAAGTACCCACGCTGTACCCCACCCGTGCCCAG +
Preference number: 5 (lower is better)
Translates to: SASSHLGPAHPRAVT*RLPQVPTLYPTRAQ
Trigger: CTGGGCACGGGTGGGGTACAGCGTGGGTACTTGTGGCAGCCGCCACGTTACTGCACGCGGGTGGGCTGGCCCAAGGTGACTGCTGGCTGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CCA 90 bp AGTAGACGAGGTCTCGGGGTCGTGGCCGGGTCAGAGGCTCCAGGATaGATGCCTTGCGGCCACCCAAGCCCTCGTGAGTGGGTGGAGGTG +
Preference number: 5 (lower is better)
Translates to: SRRGLGVVAGSEAPG*MPCGHPSPREWVEV
Trigger: CACCTCCACCCACTCACGAGGGCTTGGGTGGCCGCAAGGCATCCATCCTGGAGCCTCTGACCCGGCCACGACCCCGAGACCTCGTCTACT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CAA 90 bp TTCGGAGAGGACAGGGCCAGGCTTCCTTGGGCCCTGCCAAAGGGTGGAGGGAGGTTCCCCTTGGTGGCCTaGGGGGTCTCGCTGCTCTCC +
Preference number: 5 (lower is better)
Translates to: FGEDRARLPWALPKGGGRFPLVA*GVSLLS
Trigger: GGAGAGCAGCGAGACCCCCAAGGCCACCAAGGGGAA...CCTCCCTCCACCCTTTGGCAGGGCCCAAGGAAGCCTGGCCCTGTCCTCTCCGAA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CAA 90 bp GTCCAATGGGCATCACGAGTTTCGGAGAGGACAGGGCCAGGCTTCCTTGGGCCCCCGTACTGGCGACTCTaGTCGGCCTCCGCCCGCAGC +
Preference number: 5 (lower is better)
Translates to: VQWASRVSERTGPGFLGPPYWRL*SASARS
Trigger: GCTGCGGGCGGAGGCCGACAAGAGTCGCCAGTACGG...GGGCCCAAGGAAGCCTGGCCCTGTCCTCTCCGAAACTCGTGATGCCCATTGGAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS GCA 90 bp GCTACGTTGGTGGCCGTGGCGGCCCTGGCCCAGGAGGAAGTAGCCTaGGTAGACAGGAGGAGACTCACACTGCACCCGGTCATGGGTCTG +
Preference number: 5 (lower is better)
Translates to: ATLVAVAALAQEEVA*VDRRRLTLHPVMGL
Trigger: CAGACCCATGACCGGGTGCAGTGTGAGTCTCCTCCTGTCTACGCAGGCTACTTCCTCCTGGGCCAGGGCCGCCACGGCCACCAACGTAGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CCA 90 bp GTGGTACTGTGGGGACAGCTGCGAGTAGACGAGGTCTCGGGGTCGTaGCCGGGTCAGAGGCTCCAGGATGGATGCCTTGCGGCCACCCAA +
Preference number: 5 (lower is better)
Translates to: VVLWGQLRVDEVSGS*PGQRLQDGCLAATQ
Trigger: TTGGGTGGCCGCAAGGCATCCATCCTGGAGCCTCTGACCCGGCCACGACCCCGAGACCTCGTCTACTCGCAGCTGTCCCCACAGTACCAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CAA 90 bp TTCGGAGAGGACAGGGCCAGGCTTCCTTGGGCCCTGCCAAAGGGTGGAGGGAGGGACGCTCCCAGATGCTaGGGGATGCCCTGCAGGTGT +
Preference number: 5 (lower is better)
Translates to: FGEDRARLPWALPKGGGRDAPRC*GMPCRC
Trigger: ACACCTGCAGGGCATCCCCAAGCATCTGGGAGCGTC...CCTCCCTCCACCCTTTGGCAGGGCCCAAGGAAGCCTGGCCCTGTCCTCTCCGAA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS GCA 90 bp TCACCCTCAATCAGCCAGCAGTCACCTTGGGCCAGCCCACCCGCGTaGAGTAACGTGGCGGCTGCCACAAGTACCCACGCTGTACCCCAC +
Preference number: 5 (lower is better)
Translates to: SPSISQQSPWASPPA*SNVAAATSTHAVPH
Trigger: GTGGGGTACAGCGTGGGTACTTGTGGCAGCCGCCACGTTACTGCACGCGGGTGGGCTGGCCCAAGGTGACTGCTGGCTGATTGAGGGTGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CCA 90 bp GATGAAGTGCTGGCCCTCGGGGGCCCGGGCGCAGCCTCCACACTGTaGTGCCGCTGCAGGCCACCATGGCCAAAGGCATCTTTGTATACA +
Preference number: 5 (lower is better)
Translates to: DEVLALGGPGAASTL*CRCRPPWPKASLYT
Trigger: TGTATACAAAGATGCCTTTGGCCATGGTGGCCTGCAGCGGCACCACAGTGTGGAGGCTGCGCCCGGGCCCCCGAGGGCCAGCACTTCATC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CCA 90 bp ACCAGCTGCGGCTCAGCCGCAGACACGGCCCCTGATTTGGCGCCCTaGAAGGAGGTGGACTCGGACTTGAGGGCGTCGATGCAGTTGTTA +
Preference number: 5 (lower is better)
Translates to: TSCGSAADTAPDLAP*KEVDSDLRASMQLL
Trigger: TAACAACTGCATCGACGCCCTCAAGTCCGAGTCCACCTCCTTCCAGGGCGCCAAATCAGGGGCCGTGTCTGCGGCTGAGCCGCAGCTGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CCA 90 bp GCTGCTCTCCACCAGCTTATACTGCTCCACGTCACTGGTGGCGGCTaGCAGGTAGGGTATTCGAGTCACAGCCTCAGGGCCAAGCAGCGG +
Preference number: 5 (lower is better)
Translates to: AALHQLILLHVTGGG*QVGYSSHSLRAKQR
Trigger: CCGCTGCTTGGCCCTGAGGCTGTGACTCGAATACCCTACCTGCCAGCCGCCACCAGTGACGTGGAGCAGTATAAGCTGGTGGAGAGCAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CCA 90 bp TGGGGGTCTCGCTGCTCTCCACCAGCTTATACTGCTCCACGTCACTaGTGGCGGCTGGCAGGTAGGGTATTCGAGTCACAGCCTCAGGGC +
Preference number: 5 (lower is better)
Translates to: WGSRCSPPAYTAPRH*WRLAGRVFESQPQG
Trigger: GCCCTGAGGCTGTGACTCGAATACCCTACCTGCCAGCCGCCACCAGTGACGTGGAGCAGTATAAGCTGGTGGAGAGCAGCGAGACCCCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CAA 90 bp TCCAATGGGCATCACGAGTTTCGGAGAGGACAGGGCCAGGCTTCCTTGGGCCCTTGCAGCACCTGGAGGTaGAACTGGCCGGAGAAGGCC +
Preference number: 5 (lower is better)
Translates to: SNGHHEFRRGQGQASLGPCSTWR*NWPEKA
Trigger: GGCCTTCTCCGGCCAGTTCAACCTCCAGGTGCTGCA...AGGGCCCAAGGAAGCCTGGCCCTGTCCTCTCCGAAACTCGTGATGCCCATTGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CCA 90 bp AACCACACGAAGCCTTTGTCACCCTCAATCAGCCAGCAGTCACCTTaGGCCAGCCCACCCGCGTGCAGTAACGTGGCGGCTGCCACAAGT +
Preference number: 5 (lower is better)
Translates to: NHTKPLSPSISQQSP*ASPPACSNVAAATS
Trigger: ACTTGTGGCAGCCGCCACGTTACTGCACGCGGGTGGGCTGGCCCAAGGTGACTGCTGGCTGATTGAGGGTGACAAAGGCTTCGTGTGGTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CCA 90 bp GGGTCTCGCTGCTCTCCACCAGCTTATACTGCTCCACGTCACTGGTaGCGGCTGGCAGGTAGGGTATTCGAGTCACAGCCTCAGGGCCAA +
Preference number: 5 (lower is better)
Translates to: GSRCSPPAYTAPRHW*RLAGRVFESQPQGQ
Trigger: TTGGCCCTGAGGCTGTGACTCGAATACCCTACCTGCCAGCCGCCACCAGTGACGTGGAGCAGTATAAGCTGGTGGAGAGCAGCGAGACCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CAA 90 bp TCCAATGGGCATCACGAGTTTCGGAGAGGACAGGGCCAGGCTTCCTTGGGCCCTGAGGTGGACTCGGACTaGAGGGCGTCGATGCAGTTG +
Preference number: 5 (lower is better)
Translates to: SNGHHEFRRGQGQASLGPEVDSD*RASMQL
Trigger: CAACTGCATCGACGCCCTCAAGTCCGAGTCCACCTC...AGGGCCCAAGGAAGCCTGGCCCTGTCCTCTCCGAAACTCGTGATGCCCATTGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS TCA 90 bp TTTTGGGTCAGCTGCTTGACCTTCATGGAGGGACGGGCCTCTGTCTaGGGGACCAGCGTAGTCAGGATCACCAGCGGCGTGGTGCCATCT +
Preference number: 5 (lower is better)
Translates to: FWVSCLTFMEGRASV*GTSVVRITSGVVPS
Trigger: AGATGGCACCACGCCGCTGGTGATCCTGACTACGCTGGTCCCTCAGACAGAGGCCCGTCCCTCCATGAAGGTCAAGCAGCTGACCCAAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS GCA 90 bp TGCGCACTTCAATGTAGTTCCCCTTGGTGGCCTTGGGGGTCTCGCTaGTCTCCACCAGCTTATACTGCTCCACGTCACTGGTGGCGGCTG +
Preference number: 5 (lower is better)
Translates to: CALQCSSPWWPWGSR*SPPAYTAPRHWWRL
Trigger: CAGCCGCCACCAGTGACGTGGAGCAGTATAAGCTGGTGGAGAGCAGCGAGACCCCCAAGGCCACCAAGGGGAACTACATTGAAGTGCGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS GCA 90 bp GAAAGGGTTGCTGTAGATCTCACACACCGAGAGCTTGGTCAGGCCTaGGAAGGTGCCGCTGCCCAGCTGCTGGATGCGATTCATGGAGAG +
Preference number: 5 (lower is better)
Translates to: ERVAVDLTHRELGQA*EGAAAQLLDAIHGE
Trigger: CTCTCCATGAATCGCATCCAGCAGCTGGGCAGCGGCACCTTCGCAGGCCTGACCAAGCTCTCGGTGTGTGAGATCTACAGCAACCCTTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CCA 90 bp AGGAGCAGTAGAAAGGGTTGCTGTAGATCTCACACACCGAGAGCTTaGTCAGGCCTGCGAAGGTGCCGCTGCCCAGCTGCTGGATGCGAT +
Preference number: 5 (lower is better)
Translates to: RSSRKGCCRSHTPRA*SGLRRCRCPAAGCD
Trigger: ATCGCATCCAGCAGCTGGGCAGCGGCACCTTCGCAGGCCTGACCAAGCTCTCGGTGTGTGAGATCTACAGCAACCCTTTCTACTGCTCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CAA 90 bp TCCAATGGGCATCACGAGTTTCGGAGAGGACAGGGCCAGGCTTCCTTGGGCCCTTCCACGATGGTGTTGTaGATCTGTTGGGGGATGGCC +
Preference number: 5 (lower is better)
Translates to: SNGHHEFRRGQGQASLGPSTMVL*ICWGMA
Trigger: GGCCATCCCCCAACAGATCAACAACACCATCGTGGA...AGGGCCCAAGGAAGCCTGGCCCTGTCCTCTCCGAAACTCGTGATGCCCATTGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CAA 90 bp GGCATCACGAGTTTCGGAGAGGACAGGGCCAGGCTTCCTTGGGCCCTGCCAAAGTCTATGTTGACGATGTaGGGACACTCCCAGAAGGCG +
Preference number: 5 (lower is better)
Translates to: GITSFGEDRARLPWALPKSMLTM*GHSQKA
Trigger: CGCCTTCTGGGAGTGTCCCAACATCGTCAACATAGA...CTTTGGCAGGGCCCAAGGAAGCCTGGCCCTGTCCTCTCCGAAACTCGTGATGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS TCA 90 bp TGCCGCTGCCCAGCTGCTGGATGCGATTCATGGAGAGATCTATGTTaGCGATGTTGGGACACTCCCAGAAGGCGCTGGCCATCACCACCT +
Preference number: 5 (lower is better)
Translates to: CRCPAAGCDSWRDLC*RCWDTPRRRWPSPP
Trigger: AGGTGGTGATGGCCAGCGCCTTCTGGGAGTGTCCCAACATCGTCAACATAGATCTCTCCATGAATCGCATCCAGCAGCTGGGCAGCGGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS GCA 90 bp CACACCGAGAGCTTGGTCAGGCCTGCGAAGGTGCCGCTGCCCAGCTaGTGGATGCGATTCATGGAGAGATCTATGTTGACGATGTTGGGA +
Preference number: 5 (lower is better)
Translates to: HTESLVRPAKVPLPS*WMRFMERSMLTMLG
Trigger: TCCCAACATCGTCAACATAGATCTCTCCATGAATCGCATCCAGCAGCTGGGCAGCGGCACCTTCGCAGGCCTGACCAAGCTCTCGGTGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS GCA 90 bp GGCTGGGTCAGCTTGGACACGGTGAACGATTTGCTGTTATTGTACTaGTCCAGCGTGTACATGCGGTTGAACGGGCTCGGCAGCTGCACC +
Preference number: 5 (lower is better)
Translates to: GWVSLDTVNDLLLLY*SSVYMRLNGLGSCT
Trigger: GGTGCAGCTGCCGAGCCCGTTCAACCGCATGTACACGCTGGAGCAGTACAATAACAGCAAATCGTTCACCGTGTCCAAGCTGACCCAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CCA 90 bp ACCGAGAGCTTGGTCAGGCCTGCGAAGGTGCCGCTGCCCAGCTGCTaGATGCGATTCATGGAGAGATCTATGTTGACGATGTTGGGACAC +
Preference number: 5 (lower is better)
Translates to: TESLVRPAKVPLPSC*MRFMERSMLTMLGH
Trigger: GTGTCCCAACATCGTCAACATAGATCTCTCCATGAATCGCATCCAGCAGCTGGGCAGCGGCACCTTCGCAGGCCTGACCAAGCTCTCGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CAA 90 bp TCCAATGGGCATCACGAGTTTCGGAGAGGACAGGGCCAGGCTTCCTTGGGCCCTAACCACACGAAGCCTTaGTCACCCTCAATCAGCCAG +
Preference number: 5 (lower is better)
Translates to: SNGHHEFRRGQGQASLGPNHTKP*SPSISQ
Trigger: CTGGCTGATTGAGGGTGACAAAGGCTTCGTGTGGTT...AGGGCCCAAGGAAGCCTGGCCCTGTCCTCTCCGAAACTCGTGATGCCCATTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS GCA 90 bp TGCTGTAGATCTCACACACCGAGAGCTTGGTCAGGCCTGCGAAGGTaGCGCTGCCCAGCTGCTGGATGCGATTCATGGAGAGATCTATGT +
Preference number: 5 (lower is better)
Translates to: CCRSHTPRAWSGLRR*RCPAAGCDSWRDLC
Trigger: ACATAGATCTCTCCATGAATCGCATCCAGCAGCTGGGCAGCGGCACCTTCGCAGGCCTGACCAAGCTCTCGGTGTGTGAGATCTACAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS GCA 90 bp TTGTACTGCTCCAGCGTGTACATGCGGTTGAACGGGCTCGGCAGCTaGACCATGATGGTGGCCGAATTTTGGGTCAGCTGCTTGACCTTC +
Preference number: 5 (lower is better)
Translates to: LYCSSVYMRLNGLGS*TMMVAEFWVSCLTF
Trigger: GAAGGTCAAGCAGCTGACCCAAAATTCGGCCACCATCATGGTGCAGCTGCCGAGCCCGTTCAACCGCATGTACACGCTGGAGCAGTACAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CAA 90 bp TCTATCCTTTTTGGTCCAATGGGCATCACGAGTTTCGGAGAGGACAGGGCCAGGTCACACACCGAGAGCTaGGTCAGGCCTGCGAAGGTG +
Preference number: 5 (lower is better)
Translates to: SILFGPMGITSFGEDRARSHTES*VRPAKV
Trigger: CACCTTCGCAGGCCTGACCAAGCTCTCGGTGTGTGA...CCTGGCCCTGTCCTCTCCGAAACTCGTGATGCCCATTGGACCAAAAAGGATAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CAA 90 bp ACATATGTTGGATTTAGTGTTAAGTCTCAGTCAGGGATAGCTGCTGTGGGTGGTGGTGGGCTGGGCGGCTaGGGCAGGCAGATGGTAAGG +
Preference number: 5 (lower is better)
Translates to: TYVGFSVKSQSGIAAVGGGGLGG*GRQMVR
Trigger: CCTTACCATCTGCCTGCCCAAGCCGCCCAGCCCACC...ACCACCCACAGCAGCTATCCCTGACTGAGACTTAACACTAAATCCAACATATGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CAA 90 bp GGCAGCAGGCACATTACAGTTTACATGGAAGTTAGTATATCTACTGTCTCGGCCGACACGGCCCCTGATTaGGCGCCCTGGAAGGAGGTG +
Preference number: 5 (lower is better)
Translates to: GSRHITVYMEVSISTVSADTAPD*APWKEV
Trigger: CACCTCCTTCCAGGGCGCCAAATCAGGGGCCGTGTC...GGCCGAGACAGTAGATATACTAACTTCCATGTAAACTGTAATGTGCCTGCTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CAA 90 bp GTAAGACACAGTTTTCCGAAGTCCCATGTGTGCATGTGTGTGCATGTGCATGTGGACAGGAAGCTGTGCTaGCTGGCCAGAGGCTCGGAC +
Preference number: 5 (lower is better)
Translates to: VRHSFPKSHVCMCVHVHVDRKLC*LARGSD
Trigger: GTCCGAGCCTCTGGCCAGCAAGCACAGCTTCCTGTC...CACATGCACATGCACACACATGCACACATGGGACTTCGGAAAACTGTGTCTTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CAA 90 bp TGTGTGTGTGTGTGTGTGTCTTGCTTGCTTGCACCAGGCAGCAGGCACATTACAAGGTCCACGATGGTGTaGTTGATCTGTTGGGGGATG +
Preference number: 5 (lower is better)
Translates to: CVCVCVSCLLAPGSRHITRSTMV*LICWGM
Trigger: CATCCCCCAACAGATCAACAACACCATCGTGGACCT...TGTAATGTGCCTGCTGCCTGGTGCAAGCAAGCAAGACACACACACACACACACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CAA 90 bp GGCAGCAGGCACATTACAGTTTACATGGAAGTTAGTATATCTACTGTCTCGGCCTACAGGTACTCGAGCTaGCTCAGGCCCCGCAGCATG +
Preference number: 5 (lower is better)
Translates to: GSRHITVYMEVSISTVSAYRYSS*LRPRSM
Trigger: CATGCTGCGGGGCCTGAGCAAGCTCGAGTACCTGTA...GGCCGAGACAGTAGATATACTAACTTCCATGTAAACTGTAATGTGCCTGCTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CAA 90 bp ACATATGTTGGATTTAGTGTTAAGTCTCAGTCAGGGATAGCTGCTGTGGGTGGTTGGGTCTGTGTGGCGTaGGTGAAGGCAGCCAGCCAG +
Preference number: 5 (lower is better)
Translates to: TYVGFSVKSQSGIAAVGGWVCVA*VKAASQ
Trigger: CTGGCTGGCTGCCTTCACCAACGCCACACAGACCCA...ACCACCCACAGCAGCTATCCCTGACTGAGACTTAACACTAAATCCAACATATGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CAA 90 bp GTCAGGGATAGCTGCTGTGGGTGGTCTATCCTTTTTGGTCCAATGGGCATCACGATGGAGAGATCTATGTaGACGATGTTGGGACACTCC +
Preference number: 5 (lower is better)
Translates to: VRDSCCGWSILFGPMGITMERSM*TMLGHS
Trigger: GGAGTGTCCCAACATCGTCAACATAGATCTCTCCAT...CGTGATGCCCATTGGACCAAAAAGGATAGACCACCCACAGCAGCTATCCCTGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CAA 90 bp GTAAGACACAGTTTTCCGAAGTCCCATGTGTGCATGTGTGTGCATGTGCATGTGTTTTGGGTCAGCTGCTaGACCTTCATGGAGGGACGG +
Preference number: 5 (lower is better)
Translates to: VRHSFPKSHVCMCVHVHVFWVSC*TFMEGR
Trigger: CCGTCCCTCCATGAAGGTCAAGCAGCTGACCCAAAA...CACATGCACATGCACACACATGCACACATGGGACTTCGGAAAACTGTGTCTTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CAA 90 bp GGCAGCAGGCACATTACAGTTTACATGGAAGTTAGTATATCTACTGTCTCGGCCGGTGTTGTTGATCTGTaGGGGGATGGCCTCATAGGG +
Preference number: 5 (lower is better)
Translates to: GSRHITVYMEVSISTVSAGVVDL*GDGLIG
Trigger: CCCTATGAGGCCATCCCCCAACAGATCAACAACACC...GGCCGAGACAGTAGATATACTAACTTCCATGTAAACTGTAATGTGCCTGCTGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CAA 90 bp ACATATGTTGGATTTAGTGTTAAGTCTCAGTCAGGGATAGCTGCTGTGGGTGGTACCACCTCGATGAGGTaGGCCTGTAGGTACAGGTAC +
Preference number: 5 (lower is better)
Translates to: TYVGFSVKSQSGIAAVGGTTSMR*ACRYRY
Trigger: GTACCTGTACCTACAGGCCAACCTCATCGAGGTGGT...ACCACCCACAGCAGCTATCCCTGACTGAGACTTAACACTAAATCCAACATATGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS-3UTR CAA 90 bp GGCAGCAGGCACATTACAGTTTACATGGAAGTTAGTATATCTACTGTCTCGGCCGATGGTGGCCGAATTTaGGGTCAGCTGCTTGACCTT +
Preference number: 5 (lower is better)
Translates to: GSRHITVYMEVSISTVSADGGRI*GQLLDL
Trigger: AAGGTCAAGCAGCTGACCCAAAATTCGGCCACCATC...GGCCGAGACAGTAGATATACTAACTTCCATGTAAACTGTAATGTGCCTGCTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS TCA 72 bp CCGGAAGGTGCGAGGGCTGCGTGCAGAACCGCTGGATaGAGTGCTGGCCCTCGGGGGCCCGGGCGCAGCCTC +
Preference number: 6 (lower is better)
Translates to: PEGARAACRTAG*SAGPRGPGRSL
Trigger: GAGGCTGCGCCCGGGCCCCCGAGGGCCAGCACTTCATCCAGCGGTTCTGCACGCAGCCCTCGCACCTTCCGG
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS GCA 72 bp AGGTGCGAGGGCTGCGTGCAGAACCGCTGGATGAAGTaGTGGCCCTCGGGGGCCCGGGCGCAGCCTCCACAC +
Preference number: 6 (lower is better)
Translates to: RCEGCVQNRWMK*WPSGARAQPPH
Trigger: GTGTGGAGGCTGCGCCCGGGCCCCCGAGGGCCAGCACTTCATCCAGCGGTTCTGCACGCAGCCCTCGCACCT
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CCA 72 bp CTGGCCCTCGGGGGCCCGGGCGCAGCCTCCACACTGTaGTGCCGCTGCAGGCCACCATGGCCAAAGGCATCT +
Preference number: 6 (lower is better)
Translates to: LALGGPGAASTL*CRCRPPWPKAS
Trigger: AGATGCCTTTGGCCATGGTGGCCTGCAGCGGCACCACAGTGTGGAGGCTGCGCCCGGGCCCCCGAGGGCCAG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS GCA 72 bp GCCCTCGGGGGCCCGGGCGCAGCCTCCACACTGTGGTaGCGCTGCAGGCCACCATGGCCAAAGGCATCTTTG +
Preference number: 6 (lower is better)
Translates to: ALGGPGAASTLW*RCRPPWPKASL
Trigger: CAAAGATGCCTTTGGCCATGGTGGCCTGCAGCGGCACCACAGTGTGGAGGCTGCGCCCGGGCCCCCGAGGGC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CCA 72 bp TGCGAGGGCTGCGTGCAGAACCGCTGGATGAAGTGCTaGCCCTCGGGGGCCCGGGCGCAGCCTCCACACTGT +
Preference number: 6 (lower is better)
Translates to: CEGCVQNRWMKC*PSGARAQPPHC
Trigger: ACAGTGTGGAGGCTGCGCCCGGGCCCCCGAGGGCCAGCACTTCATCCAGCGGTTCTGCACGCAGCCCTCGCA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS GCA 72 bp GTGTGCCGGTGGCCTCAGCCCGGAAGGTGCGAGGGCTaGGTGCAGAACCGCTGGATGAAGTGCTGGCCCTCG +
Preference number: 6 (lower is better)
Translates to: VCRWPQPGRCEG*VQNRWMKCWPS
Trigger: CGAGGGCCAGCACTTCATCCAGCGGTTCTGCACGCAGCCCTCGCACCTTCCGGGCTGAGGCCACCGGCACAC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS GCA 72 bp TCGGGGTCGTGGCCGGGTCAGAGGCTCCAGGATGGATaGCTTGCGGCCACCCAAGCCCTCGTGAGTGGGTGG +
Preference number: 6 (lower is better)
Translates to: SGSWPGQRLQDG*LAATQALVSGW
Trigger: CCACCCACTCACGAGGGCTTGGGTGGCCGCAAGGCATCCATCCTGGAGCCTCTGACCCGGCCACGACCCCGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CCA 72 bp GGTCTCGGGGTCGTGGCCGGGTCAGAGGCTCCAGGATaGATGCCTTGCGGCCACCCAAGCCCTCGTGAGTGG +
Preference number: 6 (lower is better)
Translates to: GLGVVAGSEAPG*MPCGHPSPREW
Trigger: CCACTCACGAGGGCTTGGGTGGCCGCAAGGCATCCATCCTGGAGCCTCTGACCCGGCCACGACCCCGAGACC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CAA 72 bp GGGTATGAGTGCCGATGCTCGCCGTACTGGCGACTCTaGTCGGCCTCCGCCCGCAGCACAGTGGCCGCGGGT +
Preference number: 6 (lower is better)
Translates to: GYECRCSPYWRL*SASARSTVAAG
Trigger: ACCCGCGGCCACTGTGCTGCGGGCGGAGGCCGACAAGAGTCGCCAGTACGGCGAGCATCGGCACTCATACCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CCA 72 bp ACTTGGTCTCGGTGGCTGGGGCCTTATGTGTGCCGGTaGCCTCAGCCCGGAAGGTGCGAGGGCTGCGTGCAG +
Preference number: 6 (lower is better)
Translates to: TWSRWLGPYVCR*PQPGRCEGCVQ
Trigger: CTGCACGCAGCCCTCGCACCTTCCGGGCTGAGGCCACCGGCACACATAAGGCCCCAGCCACCGAGACCAAGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CAA 90 bp GACAGCAGCACCAGCTGCGGCTCAGCCGCAGACACGGCCCCTGATTaGGCGCCCTGGAAGGAGGTGGACTCGGACTTGAGGGCGTCGATG +
Preference number: 6 (lower is better)
Translates to: DSSTSCGSAADTAPD*APWKEVDSDLRASM
Trigger: CATCGACGCCCTCAAGTCCGAGTCCACCTCCTTCCAGGGCGCCAAATCAGGGGCCGTGTCTGCGGCTGAGCCGCAGCTGGTGCTGCTGTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS TCA 72 bp AGGGGCAGGTGGCTCGGCAGGGTGAGAGCCGGGGTATaGGTGCCGATGCTCGCCGTACTGGCGACTCTTGTC +
Preference number: 6 (lower is better)
Translates to: RGRWLGRVRAGV*VPMLAVLATLV
Trigger: GACAAGAGTCGCCAGTACGGCGAGCATCGGCACTCATACCCCGGCTCTCACCCTGCCGAGCCACCTGCCCCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS GCA 72 bp TCTGGGGTTCACCTGGCCGGCTCAGCTCACAGCCTCTaGGCTCCTGCGGCTCCCCCGTGCGCACTTCAATGT +
Preference number: 6 (lower is better)
Translates to: SGVHLAGSAHSL*APAAPPCALQC
Trigger: ACATTGAAGTGCGCACGGGGGAGCCGCAGGAGCGCAGAGGCTGTGAGCTGAGCCGGCCAGGTGAACCCCAGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS GCA 72 bp GGGCCTTATGTGTGCCGGTGGCCTCAGCCCGGAAGGTaGGAGGGCTGCGTGCAGAACCGCTGGATGAAGTGC +
Preference number: 6 (lower is better)
Translates to: GPYVCRWPQPGR*EGCVQNRWMKC
Trigger: GCACTTCATCCAGCGGTTCTGCACGCAGCCCTCGCACCTTCCGGGCTGAGGCCACCGGCACACATAAGGCCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CCA 72 bp AGTCACCTTGGGCCAGCCCACCCGCGTGCAGTAACGTaGCGGCTGCCACAAGTACCCACGCTGTACCCCACC +
Preference number: 6 (lower is better)
Translates to: SHLGPAHPRAVT*RLPQVPTLYPT
Trigger: GGTGGGGTACAGCGTGGGTACTTGTGGCAGCCGCCACGTTACTGCACGCGGGTGGGCTGGCCCAAGGTGACT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CCA 72 bp GGCTCAGCCGCAGACACGGCCCCTGATTTGGCGCCCTaGAAGGAGGTGGACTCGGACTTGAGGGCGTCGATG +
Preference number: 6 (lower is better)
Translates to: GSAADTAPDLAP*KEVDSDLRASM
Trigger: CATCGACGCCCTCAAGTCCGAGTCCACCTCCTTCCAGGGCGCCAAATCAGGGGCCGTGTCTGCGGCTGAGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CCA 72 bp TGGGGACAGCTGCGAGTAGACGAGGTCTCGGGGTCGTaGCCGGGTCAGAGGCTCCAGGATGGATGCCTTGCG +
Preference number: 6 (lower is better)
Translates to: WGQLRVDEVSGS*PGQRLQDGCLA
Trigger: CGCAAGGCATCCATCCTGGAGCCTCTGACCCGGCCACGACCCCGAGACCTCGTCTACTCGCAGCTGTCCCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CAA 72 bp ACCAGCTGCGGCTCAGCCGCAGACACGGCCCCTGATTaGGCGCCCTGGAAGGAGGTGGACTCGGACTTGAGG +
Preference number: 6 (lower is better)
Translates to: TSCGSAADTAPD*APWKEVDSDLR
Trigger: CCTCAAGTCCGAGTCCACCTCCTTCCAGGGCGCCAAATCAGGGGCCGTGTCTGCGGCTGAGCCGCAGCTGGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS GCA 72 bp ATCAGCCAGCAGTCACCTTGGGCCAGCCCACCCGCGTaGAGTAACGTGGCGGCTGCCACAAGTACCCACGCT +
Preference number: 6 (lower is better)
Translates to: ISQQSPWASPPA*SNVAAATSTHA
Trigger: AGCGTGGGTACTTGTGGCAGCCGCCACGTTACTGCACGCGGGTGGGCTGGCCCAAGGTGACTGCTGGCTGAT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS GCA 72 bp CAATGTACTTGGTCTCGGTGGCTGGGGCCTTATGTGTaGCGGTGGCCTCAGCCCGGAAGGTGCGAGGGCTGC +
Preference number: 6 (lower is better)
Translates to: QCTWSRWLGPYV*RWPQPGRCEGC
Trigger: GCAGCCCTCGCACCTTCCGGGCTGAGGCCACCGGCACACATAAGGCCCCAGCCACCGAGACCAAGTACATTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CCA 72 bp ATTCGAGTCACAGCCTCAGGGCCAAGCAGCGGACCCTaGGTCAGGGGAGCCAGGCCAGGCGCCTCAATCTCA +
Preference number: 6 (lower is better)
Translates to: IRVTASGPSSGP*VRGARPGASIS
Trigger: TGAGATTGAGGCGCCTGGCCTGGCTCCCCTGACCCAGGGTCCGCTGCTTGGCCCTGAGGCTGTGACTCGAAT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS GCA 72 bp TCAGCTCACAGCCTCTGCGCTCCTGCGGCTCCCCCGTaGGCACTTCAATGTAGTTCCCCTTGGTGGCCTTGG +
Preference number: 6 (lower is better)
Translates to: SAHSLCAPAAPP*ALQCSSPWWPW
Trigger: CCAAGGCCACCAAGGGGAACTACATTGAAGTGCGCACGGGGGAGCCGCAGGAGCGCAGAGGCTGTGAGCTGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CAA 90 bp GGAGCCCTCTGTGCACACAGACTGAAGCTTGCTAAGGATGCTACGTaGGTGGCCGTGGCGGCCCTGGCCCAGGAGGAAGTAGCCTGCGTA +
Preference number: 6 (lower is better)
Translates to: GALCAHRLKLAKDAT*VAVAALAQEEVACV
Trigger: TACGCAGGCTACTTCCTCCTGGGCCAGGGCCGCCACGGCCACCAACGTAGCATCCTTAGCAAGCTTCAGTCTGTGTGCACAGAGGGCTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS TCA 72 bp AGCTGCTTGACCTTCATGGAGGGACGGGCCTCTGTCTaGGGGACCAGCGTAGTCAGGATCACCAGCGGCGTG +
Preference number: 6 (lower is better)
Translates to: SCLTFMEGRASV*GTSVVRITSGV
Trigger: CACGCCGCTGGTGATCCTGACTACGCTGGTCCCTCAGACAGAGGCCCGTCCCTCCATGAAGGTCAAGCAGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CCA 72 bp AAGCCTTTGTCACCCTCAATCAGCCAGCAGTCACCTTaGGCCAGCCCACCCGCGTGCAGTAACGTGGCGGCT +
Preference number: 6 (lower is better)
Translates to: KPLSPSISQQSP*ASPPACSNVAA
Trigger: AGCCGCCACGTTACTGCACGCGGGTGGGCTGGCCCAAGGTGACTGCTGGCTGATTGAGGGTGACAAAGGCTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CAA 72 bp CGGGCTCGGCAGCTGCACCATGATGGTGGCCGAATTTaGGGTCAGCTGCTTGACCTTCATGGAGGGACGGGC +
Preference number: 6 (lower is better)
Translates to: RARQLHHDGGRI*GQLLDLHGGTG
Trigger: GCCCGTCCCTCCATGAAGGTCAAGCAGCTGACCCAAAATTCGGCCACCATCATGGTGCAGCTGCCGAGCCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CAA 90 bp GCGGTTGAACGGGCTCGGCAGCTGCACCATGATGGTGGCCGAATTTaGGGTCAGCTGCTTGACCTTCATGGAGGGACGGGCCTCTGTCTG +
Preference number: 6 (lower is better)
Translates to: AVERARQLHHDGGRI*GQLLDLHGGTGLCL
Trigger: CAGACAGAGGCCCGTCCCTCCATGAAGGTCAAGCAGCTGACCCAAAATTCGGCCACCATCATGGTGCAGCTGCCGAGCCCGTTCAACCGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS TCA 72 bp ACTCCGCATCATCCTTGTGTCTCCGTCGGCTCAGTCTaGGACGCTCCCAGATGCTTGGGGATGCCCTGCAGG +
Preference number: 6 (lower is better)
Translates to: TPHHPCVSVGSV*DAPRCLGMPCR
Trigger: CCTGCAGGGCATCCCCAAGCATCTGGGAGCGTCTCAGACTGAGCCGACGGAGACACAAGGATGATGCGGAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CCA 72 bp CACCAGCTTATACTGCTCCACGTCACTGGTGGCGGCTaGCAGGTAGGGTATTCGAGTCACAGCCTCAGGGCC +
Preference number: 6 (lower is better)
Translates to: HQLILLHVTGGG*QVGYSSHSLRA
Trigger: GGCCCTGAGGCTGTGACTCGAATACCCTACCTGCCAGCCGCCACCAGTGACGTGGAGCAGTATAAGCTGGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS GCA 72 bp TATGTGAGGTTTCCGAAGCGGCTCAGGGAGGCGTACTaGACGCTGCGGATACGGTTCTCGTTAAGCCGCAGG +
Preference number: 6 (lower is better)
Translates to: YVRFPKRLREAY*TLRIRFSLSRR
Trigger: CCTGCGGCTTAACGAGAACCGTATCCGCAGCGTGCAGTACGCCTCCCTGAGCCGCTTCGGAAACCTCACATA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS GCA 72 bp ACACCGAGAGCTTGGTCAGGCCTGCGAAGGTGCCGCTaGCCAGCTGCTGGATGCGATTCATGGAGAGATCTA +
Preference number: 6 (lower is better)
Translates to: TPRAWSGLRRCR*PAAGCDSWRDL
Trigger: TAGATCTCTCCATGAATCGCATCCAGCAGCTGGGCAGCGGCACCTTCGCAGGCCTGACCAAGCTCTCGGTGT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS GCA 72 bp TCCAGCGTGTACATGCGGTTGAACGGGCTCGGCAGCTaGACCATGATGGTGGCCGAATTTTGGGTCAGCTGC +
Preference number: 6 (lower is better)
Translates to: SSVYMRLNGLGS*TMMVAEFWVSC
Trigger: GCAGCTGACCCAAAATTCGGCCACCATCATGGTGCAGCTGCCGAGCCCGTTCAACCGCATGTACACGCTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CCA 72 bp AGAAAGGGTTGCTGTAGATCTCACACACCGAGAGCTTaGTCAGGCCTGCGAAGGTGCCGCTGCCCAGCTGCT +
Preference number: 6 (lower is better)
Translates to: RKGCCRSHTPRA*SGLRRCRCPAA
Trigger: AGCAGCTGGGCAGCGGCACCTTCGCAGGCCTGACCAAGCTCTCGGTGTGTGAGATCTACAGCAACCCTTTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CCA 72 bp CGCTGCTCTCCACCAGCTTATACTGCTCCACGTCACTaGTGGCGGCTGGCAGGTAGGGTATTCGAGTCACAG +
Preference number: 6 (lower is better)
Translates to: RCSPPAYTAPRH*WRLAGRVFESQ
Trigger: CTGTGACTCGAATACCCTACCTGCCAGCCGCCACCAGTGACGTGGAGCAGTATAAGCTGGTGGAGAGCAGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CCA 72 bp GCAGCCTCCACACTGTGGTGCCGCTGCAGGCCACCATaGCCAAAGGCATCTTTGTATACAGGGGACAGGAAG +
Preference number: 6 (lower is better)
Translates to: AASTLWCRCRPP*PKASLYTGDRK
Trigger: CTTCCTGTCCCCTGTATACAAAGATGCCTTTGGCCATGGTGGCCTGCAGCGGCACCACAGTGTGGAGGCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CAA 72 bp TGTGCACACAGACTGAAGCTTGCTAAGGATGCTACGTaGGTGGCCGTGGCGGCCCTGGCCCAGGAGGAAGTA +
Preference number: 6 (lower is better)
Translates to: CAHRLKLAKDAT*VAVAALAQEEV
Trigger: TACTTCCTCCTGGGCCAGGGCCGCCACGGCCACCAACGTAGCATCCTTAGCAAGCTTCAGTCTGTGTGCACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CAA 72 bp TGGTGCCGCTGCAGGCCACCATGGCCAAAGGCATCTTaGTATACAGGGGACAGGAAGCTGTGCTTGCTGGCC +
Preference number: 6 (lower is better)
Translates to: WCRCRPPWPKAS*YTGDRKLCLLA
Trigger: GGCCAGCAAGCACAGCTTCCTGTCCCCTGTATACAAAGATGCCTTTGGCCATGGTGGCCTGCAGCGGCACCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CAA 90 bp GTGCCGCTGCCCAGCTGCTGGATGCGATTCATGGAGAGATCTATGTaGACGATGTTGGGACACTCCCAGAAGGCGCTGGCCATCACCACC +
Preference number: 6 (lower is better)
Translates to: VPLPSCWMRFMERSM*TMLGHSQKALAITT
Trigger: GGTGGTGATGGCCAGCGCCTTCTGGGAGTGTCCCAACATCGTCAACATAGATCTCTCCATGAATCGCATCCAGCAGCTGGGCAGCGGCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS GCA 72 bp AGCTTGGTCAGGCCTGCGAAGGTGCCGCTGCCCAGCTaGTGGATGCGATTCATGGAGAGATCTATGTTGACG +
Preference number: 6 (lower is better)
Translates to: SLVRPAKVPLPS*WMRFMERSMLT
Trigger: CGTCAACATAGATCTCTCCATGAATCGCATCCAGCAGCTGGGCAGCGGCACCTTCGCAGGCCTGACCAAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CCA 72 bp CCGTGCGCACTTCAATGTAGTTCCCCTTGGTGGCCTTaGGGGTCTCGCTGCTCTCCACCAGCTTATACTGCT +
Preference number: 6 (lower is better)
Translates to: PCALQCSSPWWP*GSRCSPPAYTA
Trigger: AGCAGTATAAGCTGGTGGAGAGCAGCGAGACCCCCAAGGCCACCAAGGGGAACTACATTGAAGTGCGCACGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CCA 72 bp TTGGTCAGGCCTGCGAAGGTGCCGCTGCCCAGCTGCTaGATGCGATTCATGGAGAGATCTATGTTGACGATG +
Preference number: 6 (lower is better)
Translates to: LVRPAKVPLPSC*MRFMERSMLTM
Trigger: CATCGTCAACATAGATCTCTCCATGAATCGCATCCAGCAGCTGGGCAGCGGCACCTTCGCAGGCCTGACCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CAA 72 bp CCCAGCTGCTGGATGCGATTCATGGAGAGATCTATGTaGACGATGTTGGGACACTCCCAGAAGGCGCTGGCC +
Preference number: 6 (lower is better)
Translates to: PSCWMRFMERSM*TMLGHSQKALA
Trigger: GGCCAGCGCCTTCTGGGAGTGTCCCAACATCGTCAACATAGATCTCTCCATGAATCGCATCCAGCAGCTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CAA 72 bp TTGCTGTTATTGTACTGCTCCAGCGTGTACATGCGGTaGAACGGGCTCGGCAGCTGCACCATGATGGTGGCC +
Preference number: 6 (lower is better)
Translates to: LLLLYCSSVYMR*NGLGSCTMMVA
Trigger: GGCCACCATCATGGTGCAGCTGCCGAGCCCGTTCAACCGCATGTACACGCTGGAGCAGTACAATAACAGCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS TCA 72 bp CCAGCTGCTGGATGCGATTCATGGAGAGATCTATGTTaGCGATGTTGGGACACTCCCAGAAGGCGCTGGCCA +
Preference number: 6 (lower is better)
Translates to: PAAGCDSWRDLC*RCWDTPRRRWP
Trigger: TGGCCAGCGCCTTCTGGGAGTGTCCCAACATCGTCAACATAGATCTCTCCATGAATCGCATCCAGCAGCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS GCA 72 bp GGAAACCCAGCAGCTCACAGGAGCAGTAGAAAGGGTTaGTGTAGATCTCACACACCGAGAGCTTGGTCAGGC +
Preference number: 6 (lower is better)
Translates to: GNPAAHRSSRKG*CRSHTPRAWSG
Trigger: GCCTGACCAAGCTCTCGGTGTGTGAGATCTACAGCAACCCTTTCTACTGCTCCTGTGAGCTGCTGGGTTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS TCA 72 bp GGATCTCCTCCTGAGGCTGGGTCAGCTTGGACACGGTaGACGATTTGCTGTTATTGTACTGCTCCAGCGTGT +
Preference number: 6 (lower is better)
Translates to: GSPPEAGSAWTR*TICCYCTAPAC
Trigger: ACACGCTGGAGCAGTACAATAACAGCAAATCGTTCACCGTGTCCAAGCTGACCCAGCCTCAGGAGGAGATCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS GCA 72 bp AGCTTGGACACGGTGAACGATTTGCTGTTATTGTACTaGTCCAGCGTGTACATGCGGTTGAACGGGCTCGGC +
Preference number: 6 (lower is better)
Translates to: SLDTVNDLLLLY*SSVYMRLNGLG
Trigger: GCCGAGCCCGTTCAACCGCATGTACACGCTGGAGCAGTACAATAACAGCAAATCGTTCACCGTGTCCAAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CAA 72 bp TGGATGCGATTCATGGAGAGATCTATGTTGACGATGTaGGGACACTCCCAGAAGGCGCTGGCCATCACCACC +
Preference number: 6 (lower is better)
Translates to: WMRFMERSMLTM*GHSQKALAITT
Trigger: GGTGGTGATGGCCAGCGCCTTCTGGGAGTGTCCCAACATCGTCAACATAGATCTCTCCATGAATCGCATCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CAA 90 bp GTGAACGATTTGCTGTTATTGTACTGCTCCAGCGTGTACATGCGGTaGAACGGGCTCGGCAGCTGCACCATGATGGTGGCCGAATTTTGG +
Preference number: 6 (lower is better)
Translates to: VNDLLLLYCSSVYMR*NGLGSCTMMVAEFW
Trigger: CCAAAATTCGGCCACCATCATGGTGCAGCTGCCGAGCCCGTTCAACCGCATGTACACGCTGGAGCAGTACAATAACAGCAAATCGTTCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8
CDS CAA 72 bp TGGGTCAGCTTGGACACGGTGAACGATTTGCTGTTATaGTACTGCTCCAGCGTGTACATGCGGTTGAACGGG +
Preference number: 6 (lower is better)
Translates to: WVSLDTVNDLLL*YCSSVYMRLNG
Trigger: CCCGTTCAACCGCATGTACACGCTGGAGCAGTACAATAACAGCAAATCGTTCACCGTGTCCAAGCTGACCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050519.8