RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ELAC2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020549

Ensembl transcript IDs: ENSMUST00000071891.12, ENSMUST00000101049.9, ENSMUST00000108697.8, ENSMUST00000132308.2

Found 321 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CCATACTGCCTCCTGGCTAGTTGTGTGCGCTGGCTCCCACCAAGGTaGCAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCC +
Preference number: 1 (lower is better)
Translates to: PYCLLASCVRWLPPR*QMWLPHRAENSLQS
Trigger: GGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGCACACAACTAGCCAGGAGGCAGTATGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101049.9
3UTR TCA 90 bp TTGGAGCCTGGGACATATACACCCAATGTCACTTGTAACATGGCTTaGCTCTGGCATGCAGAGAAAACCCCTGTGCTAGTGAGTAAGGGG +
Preference number: 1 (lower is better)
Translates to: LEPGTYTPNVTCNMA*LWHAEKTPVLVSKG
Trigger: CCCCTTACTCACTAGCACAGGGGTTTTCTCTGCATGCCAGAGTCAAGCCATGTTACAAGTGACATTGGGTGTATATGTCCCAGGCTCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101049.9
3UTR-3UTR TCA 90 bp GATTTATTAACCCTGAGCTTGGCACATGGTCTTGTTTCGGTGAAGGCTGCGGGGTGCCTCATGAGGAAGTaGGCAGAGCGCCGCCAGGCC +
Preference number: 2 (lower is better)
Translates to: DLLTLSLAHGLVSVKAAGCLMRK*AERRQA
Trigger: GGCCTGGCGGCGCTCTGCTCACTTCCTCATGAGGCA...CCCCGCAGCCTTCACCGAAACAAGACCATGTGCCAAGCTCAGGGTTAATAAATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
3UTR TCA 72 bp GGCTGCGGGGCAGTCACAACATCCTGTGCTGCCTCATaGGGAAGTGAGCAGAGCGCCGCCAGGCCAGGGAAG +
Preference number: 3 (lower is better)
Translates to: GCGAVTTSCAAS*GSEQSAARPGK
Trigger: CTTCCCTGGCCTGGCGGCGCTCTGCTCACTTCCTCATGAGGCAGCACAGGATGTTGTGACTGCCCCGCAGCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
3UTR GCA 72 bp GCCATGACCATGGAGTACTGCAGGCTGACTCCATACTaGCTCCTGGCTAGTTGTGTGCGCTGGCTCCCACCA +
Preference number: 3 (lower is better)
Translates to: AMTMEYCRLTPY*LLASCVRWLPP
Trigger: TGGTGGGAGCCAGCGCACACAACTAGCCAGGAGGCAGTATGGAGTCAGCCTGCAGTACTCCATGGTCATGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101049.9
3UTR TCA 72 bp GGGACATATACACCCAATGTCACTTGTAACATGGCTTaGCTCTGGCATGCAGAGAAAACCCCTGTGCTAGTG +
Preference number: 3 (lower is better)
Translates to: GTYTPNVTCNMA*LWHAEKTPVLV
Trigger: CACTAGCACAGGGGTTTTCTCTGCATGCCAGAGTCAAGCCATGTTACAAGTGACATTGGGTGTATATGTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101049.9
3UTR GCA 72 bp TTGAGCTTTATTGAGTCTGAGTCCTTGCAAATACTATaGTTGGAGCCTGGGACATATACACCCAATGTCACT +
Preference number: 3 (lower is better)
Translates to: LSFIESESLQIL*LEPGTYTPNVT
Trigger: AGTGACATTGGGTGTATATGTCCCAGGCTCCAAGCATAGTATTTGCAAGGACTCAGACTCAATAAAGCTCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101049.9
CDS-3UTR GCA 90 bp GAAGTGAGCAGAGCGCCGCCAGGCCAGGGAAGGCAGGCCAAGTCCTCGCCAGGGCCCGCCGCCACCACCTaGAGGTACACGGTGTTCGGG +
Preference number: 4 (lower is better)
Translates to: EVSRAPPGQGRQAKSSPGPAATT*RYTVFG
Trigger: CCCGAACACCGTGTACCTGCAGGTGGTGGCGGCGGG...CCCTGGCGAGGACTTGGCCTGCCTTCCCTGGCCTGGCGGCGCTCTGCTCACTTC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR GCA 90 bp AGTGAGCAGAGCGCCGCCAGGCCAGGGAAGGCAGGCCAAGTCCTCGCCAGGGAAGTCCTCTGGGCTGTCTaGCTGCTGGGTCAGGAGGGC +
Preference number: 4 (lower is better)
Translates to: SEQSAARPGKAGQVLAREVLWAV*LLGQEG
Trigger: GCCCTCCTGACCCAGCAGGCAGACAGCCCAGAGGAC...TTCCCTGGCGAGGACTTGGCCTGCCTTCCCTGGCCTGGCGGCGCTCTGCTCACT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR CCA 90 bp GAGCGCCGCCAGGCCAGGGAAGGCAGGCCAAGTCCTCGCCAGGGAAGGCAGGCCGTGGGGGAATCAGCTTaGGCACTGTCGGGAAGTCTC +
Preference number: 4 (lower is better)
Translates to: ERRQAREGRPSPRQGRQAVGESA*ALSGSL
Trigger: GAGACTTCCCGACAGTGCCCAAGCTGATTCCCCCAC...GGCCTGCCTTCCCTGGCGAGGACTTGGCCTGCCTTCCCTGGCCTGGCGGCGCTC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR TCA 90 bp GGAAGTGAGCAGAGCGCCGCCAGGCCAGGGAAGGCAGGCCAAGTCCTCGCCAGGTCCTGGCAGTGGTTGTaGTACTGCTGCAGCCAGGCC +
Preference number: 4 (lower is better)
Translates to: GSEQSAARPGKAGQVLARSWQWL*YCCSQA
Trigger: GGCCTGGCTGCAGCAGTATCACAACCACTGCCAGGA...CCTGGCGAGGACTTGGCCTGCCTTCCCTGGCCTGGCGGCGCTCTGCTCACTTCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR GCA 90 bp GAGGAAGTGAGCAGAGCGCCGCCAGGCCAGGGAAGGCAGGCCAAGTCCTCGCCAGGGGTCCCTGCCCCATaGTTTCCTGTTGGCACCTGC +
Preference number: 4 (lower is better)
Translates to: EEVSRAPPGQGRQAKSSPGVPAP*FPVGTC
Trigger: GCAGGTGCCAACAGGAAAGCATGGGGCAGGGACCCC...TGGCGAGGACTTGGCCTGCCTTCCCTGGCCTGGCGGCGCTCTGCTCACTTCCTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR GCA 90 bp GCGCCGCCAGGCCAGGGAAGGCAGGCCAAGTCCTCGCCAGGGAAGGCAGGCCAAAGCAGCAATGATGGGTaGAATGGCGGCCGTCCCAAC +
Preference number: 4 (lower is better)
Translates to: APPGQGRQAKSSPGKAGQSSNDG*NGGRPN
Trigger: GTTGGGACGGCCGCCATTGCACCCATCATTGCTGCT...TTGGCCTGCCTTCCCTGGCGAGGACTTGGCCTGCCTTCCCTGGCCTGGCGGCGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR GCA 90 bp GAGCGCCGCCAGGCCAGGGAAGGCAGGCCAAGTCCTCGCCAGGGAAGGCAGGCCAGCCAAAAGCATGCTTaGAGTGCCGTACCAGGCAGG +
Preference number: 4 (lower is better)
Translates to: ERRQAREGRPSPRQGRQASQKHA*SAVPGR
Trigger: CCTGCCTGGTACGGCACTGCAAGCATGCTTTTGGCT...GGCCTGCCTTCCCTGGCGAGGACTTGGCCTGCCTTCCCTGGCCTGGCGGCGCTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR GCA 90 bp CTGTGTTCGCCTCCAGGAGTCGGAGGCCCCTGGCAGATGGGAGCTCCCAGCCATGTCCTCTGGGCTGTCTaGCTGCTGGGTCAGGAGGGC +
Preference number: 4 (lower is better)
Translates to: LCSPPGVGGPWQMGAPSHVLWAV*LLGQEG
Trigger: GCCCTCCTGACCCAGCAGGCAGACAGCCCAGAGGAC...ATGGCTGGGAGCTCCCATCTGCCAGGGGCCTCCGACTCCTGGAGGCGAACACAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101049.9
CDS-3UTR CCA 90 bp TCGACTGTGTTCGCCTCCAGGAGTCGGAGGCCCCTGGCAGATGGGAGCTCCCAGAGCAAGCCCGTGTGGTaGTCGGCGTGCAGGTGGGAC +
Preference number: 4 (lower is better)
Translates to: STVFASRSRRPLADGSSQSKPVW*SACRWD
Trigger: GTCCCACCTGCACGCCGACCACCACACGGGCTTGCT...CTGGGAGCTCCCATCTGCCAGGGGCCTCCGACTCCTGGAGGCGAACACAGTCGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101049.9
CDS-3UTR GCA 90 bp AGAGCGCCGCCAGGCCAGGGAAGGCAGGCCAAGTCCTCGCCAGGGAAGGCAGGCGGGGCTGGGTTTTCCTaGACGTTCTTCCGATACTCC +
Preference number: 4 (lower is better)
Translates to: RAPPGQGRQAKSSPGKAGGAGFS*TFFRYS
Trigger: GGAGTATCGGAAGAACGTGCAGGAAAACCCAGCCCC...GCCTGCCTTCCCTGGCGAGGACTTGGCCTGCCTTCCCTGGCCTGGCGGCGCTCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR GCA 90 bp GGAAGTGAGCAGAGCGCCGCCAGGCCAGGGAAGGCAGGCCAAGTCCTCGCCAGGGTGTGGTGGTCGGCGTaGAGGTGGGACACAAACACA +
Preference number: 4 (lower is better)
Translates to: GSEQSAARPGKAGQVLARVWWSA*RWDTNT
Trigger: TGTGTTTGTGTCCCACCTGCACGCCGACCACCACAC...CCTGGCGAGGACTTGGCCTGCCTTCCCTGGCCTGGCGGCGCTCTGCTCACTTCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR GCA 90 bp AGAGCGCCGCCAGGCCAGGGAAGGCAGGCCAAGTCCTCGCCAGGGAAGGCAGGCGCACAGCCAAAAGCATaGTTGCAGTGCCGTACCAGG +
Preference number: 4 (lower is better)
Translates to: RAPPGQGRQAKSSPGKAGAQPKA*LQCRTR
Trigger: CCTGGTACGGCACTGCAAGCATGCTTTTGGCTGTGC...GCCTGCCTTCCCTGGCGAGGACTTGGCCTGCCTTCCCTGGCCTGGCGGCGCTCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR CCA 90 bp GAAGTGAGCAGAGCGCCGCCAGGCCAGGGAAGGCAGGCCAAGTCCTCGCCAGGGGATTCTGGGGCTATGTaGACCACCAGCGCCACAGGT +
Preference number: 4 (lower is better)
Translates to: EVSRAPPGQGRQAKSSPGDSGAM*TTSATG
Trigger: ACCTGTGGCGCTGGTGGTCCACATAGCCCCAGAATC...CCCTGGCGAGGACTTGGCCTGCCTTCCCTGGCCTGGCGGCGCTCTGCTCACTTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR CCA 90 bp CCGCCAGGCCAGGGAAGGCAGGCCAAGTCCTCGCCAGGGAAGGCAGGCCAAGTCGGGAAGATGTCAGGGTaGATGAGGCTGAGCTGGGTC +
Preference number: 4 (lower is better)
Translates to: PPGQGRQAKSSPGKAGQVGKMSG*MRLSWV
Trigger: GACCCAGCTCAGCCTCATCCACCCTGACATCTTCCC...GACTTGGCCTGCCTTCCCTGGCGAGGACTTGGCCTGCCTTCCCTGGCCTGGCGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR TCA 90 bp AGCAGAGCGCCGCCAGGCCAGGGAAGGCAGGCCAAGTCCTCGCCAGGGAAGGCACTCTTGGGGCGGAGCTaGTACTTGAGGAGGCATTCA +
Preference number: 4 (lower is better)
Translates to: SRAPPGQGRQAKSSPGKALLGRS*YLRRHS
Trigger: TGAATGCCTCCTCAAGTATCAGCTCCGCCCCAAGAG...TGCCTTCCCTGGCGAGGACTTGGCCTGCCTTCCCTGGCCTGGCGGCGCTCTGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR TCA 90 bp CCTCCAGGAGTCGGAGGCCCCTGGCAGATGGGAGCTCCCAGCCATGACCATGGATCCTGGCAGTGGTTGTaGTACTGCTGCAGCCAGGCC +
Preference number: 4 (lower is better)
Translates to: PPGVGGPWQMGAPSHDHGSWQWL*YCCSQA
Trigger: GGCCTGGCTGCAGCAGTATCACAACCACTGCCAGGA...TCCATGGTCATGGCTGGGAGCTCCCATCTGCCAGGGGCCTCCGACTCCTGGAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101049.9
CDS-3UTR GCA 90 bp TCGACTGTGTTCGCCTCCAGGAGTCGGAGGCCCCTGGCAGATGGGAGCTCCCAGCACCAGCGCCACAGGTaGATCAGCCTCTGCCTGGTA +
Preference number: 4 (lower is better)
Translates to: STVFASRSRRPLADGSSQHQRHR*ISLCLV
Trigger: TACCAGGCAGAGGCTGATGCACCTGTGGCGCTGGTG...CTGGGAGCTCCCATCTGCCAGGGGCCTCCGACTCCTGGAGGCGAACACAGTCGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101049.9
CDS-3UTR GCA 90 bp AGCAGAGCGCCGCCAGGCCAGGGAAGGCAGGCCAAGTCCTCGCCAGGGAAGGCACCACGCTCTCCTTCTTaGTCTGTGGGCTGTGTGGTT +
Preference number: 4 (lower is better)
Translates to: SRAPPGQGRQAKSSPGKAPRSPS*SVGCVV
Trigger: AACCACACAGCCCACAGAGCAAGAAGGAGAGCGTGG...TGCCTTCCCTGGCGAGGACTTGGCCTGCCTTCCCTGGCCTGGCGGCGCTCTGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR CCA 90 bp CCGCCAGGCCAGGGAAGGCAGGCCAAGTCCTCGCCAGGGAAGGCAGGCCAAGTCCCCATGCTTTCCTGTTaGCACCTGCACTGCTGTCCT +
Preference number: 4 (lower is better)
Translates to: PPGQGRQAKSSPGKAGQVPMLSC*HLHCCP
Trigger: AGGACAGCAGTGCAGGTGCCAACAGGAAAGCATGGG...GACTTGGCCTGCCTTCCCTGGCGAGGACTTGGCCTGCCTTCCCTGGCCTGGCGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR CCA 90 bp GAGCGCCGCCAGGCCAGGGAAGGCAGGCCAAGTCCTCGCCAGGGAAGGCAGGCCATTTCGGATCTTCATTaGGATGGCAGACCCCGTACC +
Preference number: 4 (lower is better)
Translates to: ERRQAREGRPSPRQGRQAISDLH*DGRPRT
Trigger: GGTACGGGGTCTGCCATCCCAATGAAGATCCGAAAT...GGCCTGCCTTCCCTGGCGAGGACTTGGCCTGCCTTCCCTGGCCTGGCGGCGCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR CCA 90 bp TCGACTGTGTTCGCCTCCAGGAGTCGGAGGCCCCTGGCAGATGGGAGCTCCCAGTGGGCCCGCTTCTGTTaGGGTTCTCTGTCCTCTGGG +
Preference number: 4 (lower is better)
Translates to: STVFASRSRRPLADGSSQWARFC*GSLSSG
Trigger: CCCAGAGGACAGAGAACCCCAACAGAAGCGGGCCCA...CTGGGAGCTCCCATCTGCCAGGGGCCTCCGACTCCTGGAGGCGAACACAGTCGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101049.9
CDS-3UTR CCA 90 bp GGAAGTGAGCAGAGCGCCGCCAGGCCAGGGAAGGCAGGCCAAGTCCTCGCCAGGTGTGGTTCATCTGTGTaGGCCCGCTTCTGTTGGGGT +
Preference number: 4 (lower is better)
Translates to: GSEQSAARPGKAGQVLARCGSSV*ARFCWG
Trigger: ACCCCAACAGAAGCGGGCCCACACAGATGAACCACA...CCTGGCGAGGACTTGGCCTGCCTTCCCTGGCCTGGCGGCGCTCTGCTCACTTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR TCA 90 bp GGAAGTGAGCAGAGCGCCGCCAGGCCAGGGAAGGCAGGCCAAGTCCTCGCCAGGACCTCTGCCCCTTTCTaGAGGCATTTGGCAGGAATC +
Preference number: 4 (lower is better)
Translates to: GSEQSAARPGKAGQVLARTSAPF*RHLAGI
Trigger: GATTCCTGCCAAATGCCTTCAGAAAGGGGCAGAGGT...CCTGGCGAGGACTTGGCCTGCCTTCCCTGGCCTGGCGGCGCTCTGCTCACTTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR GCA 90 bp AGAGCGCCGCCAGGCCAGGGAAGGCAGGCCAAGTCCTCGCCAGGGAAGGCAGGCAACCTCTCCATCCACTaGTGGTATCTGCTGTCGATG +
Preference number: 4 (lower is better)
Translates to: RAPPGQGRQAKSSPGKAGNLSIH*WYLLSM
Trigger: CATCGACAGCAGATACCAGCAGTGGATGGAGAGGTT...GCCTGCCTTCCCTGGCGAGGACTTGGCCTGCCTTCCCTGGCCTGGCGGCGCTCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR CCA 90 bp AGTGAGCAGAGCGCCGCCAGGCCAGGGAAGGCAGGCCAAGTCCTCGCCAGGGAATCTGGGGCTCTGGGATaGCTGTTGCTTTCCACACCT +
Preference number: 4 (lower is better)
Translates to: SEQSAARPGKAGQVLARESGALG*LLLSTP
Trigger: AGGTGTGGAAAGCAACAGCCATCCCAGAGCCCCAGA...TTCCCTGGCGAGGACTTGGCCTGCCTTCCCTGGCCTGGCGGCGCTCTGCTCACT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR CCA 90 bp CCGCCAGGCCAGGGAAGGCAGGCCAAGTCCTCGCCAGGGAAGGCAGGCCAAGTCTGTTGGGAGATGTTCTaGGGCTCTGGGATGGCTGTT +
Preference number: 4 (lower is better)
Translates to: PPGQGRQAKSSPGKAGQVCWEMF*GSGMAV
Trigger: AACAGCCATCCCAGAGCCCCAGAACATCTCCCAACA...GACTTGGCCTGCCTTCCCTGGCGAGGACTTGGCCTGCCTTCCCTGGCCTGGCGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR CCA 90 bp CCTCCAGGAGTCGGAGGCCCCTGGCAGATGGGAGCTCCCAGCCATGACCATGGAGGGAAGATGTCAGGGTaGATGAGGCTGAGCTGGGTC +
Preference number: 4 (lower is better)
Translates to: PPGVGGPWQMGAPSHDHGGKMSG*MRLSWV
Trigger: GACCCAGCTCAGCCTCATCCACCCTGACATCTTCCC...TCCATGGTCATGGCTGGGAGCTCCCATCTGCCAGGGGCCTCCGACTCCTGGAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101049.9
CDS-3UTR CCA 90 bp GCGCCGCCAGGCCAGGGAAGGCAGGCCAAGTCCTCGCCAGGGAAGGCAGGCCAACTCCTTCTTGCTCTGTaGGCTGTGTGGTTCATCTGT +
Preference number: 4 (lower is better)
Translates to: APPGQGRQAKSSPGKAGQLLLAL*AVWFIC
Trigger: ACAGATGAACCACACAGCCCACAGAGCAAGAAGGAG...TTGGCCTGCCTTCCCTGGCGAGGACTTGGCCTGCCTTCCCTGGCCTGGCGGCGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR GCA 90 bp CCTCCAGGAGTCGGAGGCCCCTGGCAGATGGGAGCTCCCAGCCATGACCATGGATTTCCTGTTGGCACCTaGACTGCTGTCCTCTGGAGG +
Preference number: 4 (lower is better)
Translates to: PPGVGGPWQMGAPSHDHGFPVGT*TAVLWR
Trigger: CCTCCAGAGGACAGCAGTGCAGGTGCCAACAGGAAA...TCCATGGTCATGGCTGGGAGCTCCCATCTGCCAGGGGCCTCCGACTCCTGGAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101049.9
CDS-3UTR GCA 90 bp GCTGCGGGGCAGTCACAACATCCTGTGCTGCCTCATGAGGAAGTGAGCAGAGCGTCTGGGCTGTCTGCCTaGTGGGTCAGGAGGGCTGCT +
Preference number: 4 (lower is better)
Translates to: AAGQSQHPVLPHEEVSRASGLSA*WVRRAA
Trigger: AGCAGCCCTCCTGACCCAGCAGGCAGACAGCCCAGA...CGCTCTGCTCACTTCCTCATGAGGCAGCACAGGATGTTGTGACTGCCCCGCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR CCA 90 bp GGAAGTGAGCAGAGCGCCGCCAGGCCAGGGAAGGCAGGCCAAGTCCTCGCCAGGTTTCTCTGCTGGGGCTaGGTTTTCCTGCACGTTCTT +
Preference number: 4 (lower is better)
Translates to: GSEQSAARPGKAGQVLARFLCWG*VFLHVL
Trigger: AAGAACGTGCAGGAAAACCCAGCCCCAGCAGAGAAA...CCTGGCGAGGACTTGGCCTGCCTTCCCTGGCCTGGCGGCGCTCTGCTCACTTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR CCA 90 bp AGTGAGCAGAGCGCCGCCAGGCCAGGGAAGGCAGGCCAAGTCCTCGCCAGGGAAGCTTCTTTTCTCTGCTaGGGCTGGGTTTTCCTGCAC +
Preference number: 4 (lower is better)
Translates to: SEQSAARPGKAGQVLAREASFLC*GWVFLH
Trigger: GTGCAGGAAAACCCAGCCCCAGCAGAGAAAAGAAGC...TTCCCTGGCGAGGACTTGGCCTGCCTTCCCTGGCCTGGCGGCGCTCTGCTCACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR TCA 90 bp GTTGTGTGCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGTCCTGGCAGTGGTTGTaGTACTGCTGCAGCCAGGCC +
Preference number: 4 (lower is better)
Translates to: VVCAGSHQGDRCGFHTGQSWQWL*YCCSQA
Trigger: GGCCTGGCTGCAGCAGTATCACAACCACTGCCAGGA...CTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGCACACAAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR TCA 90 bp GCGCCGCCAGGCCAGGGAAGGCAGGCCAAGTCCTCGCCAGGGAAGGCAGGCCAACGTACCAGGCAGGTCTaGAATTCTTCTAAGTCACAT +
Preference number: 4 (lower is better)
Translates to: APPGQGRQAKSSPGKAGQRTRQV*NSSKSH
Trigger: ATGTGACTTAGAAGAATTTCAGACCTGCCTGGTACG...TTGGCCTGCCTTCCCTGGCGAGGACTTGGCCTGCCTTCCCTGGCCTGGCGGCGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR TCA 90 bp CCTCATGAGGAAGTGAGCAGAGCGCCGCCAGGCCAGGGAAGGCAGGCCAAGTCCATCTTGGCGTACCGCTaGCTGAAGTGGTTCAGCATG +
Preference number: 4 (lower is better)
Translates to: PHEEVSRAPPGQGRQAKSILAYR*LKWFSM
Trigger: CATGCTGAACCACTTCAGTCAGCGGTACGCCAAGAT...GGACTTGGCCTGCCTTCCCTGGCCTGGCGGCGCTCTGCTCACTTCCTCATGAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR GCA 90 bp CAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGACCCGCCGCCACCACCTaGAGGTACACGGTGTTCGGG +
Preference number: 4 (lower is better)
Translates to: QGDRCGFHTGQRTAYSPGPAATT*RYTVFG
Trigger: CCCGAACACCGTGTACCTGCAGGTGGTGGCGGCGGG...TCCTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR GCA 90 bp TGTGCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAAGGGGTCCCTGCCCCATaGTTTCCTGTTGGCACCTGC +
Preference number: 4 (lower is better)
Translates to: CALAPTKVTDVASTQGREGVPAP*FPVGTC
Trigger: GCAGGTGCCAACAGGAAAGCATGGGGCAGGGACCCC...TTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGCACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR GCA 90 bp GCTGCGGGGCAGTCACAACATCCTGTGCTGCCTCATGAGGAAGTGAGCAGAGCGCACCAGCGCCACAGGTaGATCAGCCTCTGCCTGGTA +
Preference number: 4 (lower is better)
Translates to: AAGQSQHPVLPHEEVSRAHQRHR*ISLCLV
Trigger: TACCAGGCAGAGGCTGATGCACCTGTGGCGCTGGTG...CGCTCTGCTCACTTCCTCATGAGGCAGCACAGGATGTTGTGACTGCCCCGCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR GCA 90 bp GGAAGTGAGCAGAGCGCCGCCAGGCCAGGGAAGGCAGGCCAAGTCCTCGCCAGGACAACTGCCCAAAAGTaGCTTCTCCACAATCCAGGA +
Preference number: 4 (lower is better)
Translates to: GSEQSAARPGKAGQVLARTTAQK*LLHNPG
Trigger: TCCTGGATTGTGGAGAAGGCACTTTTGGGCAGTTGT...CCTGGCGAGGACTTGGCCTGCCTTCCCTGGCCTGGCGGCGCTCTGCTCACTTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR GCA 90 bp AGCAGAGCGCCGCCAGGCCAGGGAAGGCAGGCCAAGTCCTCGCCAGGGAAGGCAGTGTGTCTTCTCTACTaGTTCCTCTTCCAAGCCATC +
Preference number: 4 (lower is better)
Translates to: SRAPPGQGRQAKSSPGKAVCLLY*FLFQAI
Trigger: GATGGCTTGGAAGAGGAAGCAGTAGAGAAGACACAC...TGCCTTCCCTGGCGAGGACTTGGCCTGCCTTCCCTGGCCTGGCGGCGCTCTGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR GCA 90 bp GGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACTCTGGGCTGTCTGCCTaGTGGGTCAGGAGGGCTGCT +
Preference number: 4 (lower is better)
Translates to: GSHQGDRCGFHTGQRTAYSGLSA*WVRRAA
Trigger: AGCAGCCCTCCTGACCCAGCAGGCAGACAGCCCAGA...GTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp GAGGAAGTGAGCAGAGCGCCGCCAGGCCAGGGAAGGCAGGCCAAGTCCTCGCCAGCATCAGCCTCTGCCTaGTACCTTTTAAAGGTGTCG +
Preference number: 4 (lower is better)
Translates to: EEVSRAPPGQGRQAKSSPASASA*YLLKVS
Trigger: CGACACCTTTAAAAGGTACCAGGCAGAGGCTGATGC...TGGCGAGGACTTGGCCTGCCTTCCCTGGCCTGGCGGCGCTCTGCTCACTTCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR CCA 90 bp GTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGATGGCAGCAAGCCCGTGTGGTaGTCGGCGTGCAGGTGGGAC +
Preference number: 4 (lower is better)
Translates to: VTDVASTQGREQPTVQDGSKPVW*SACRWD
Trigger: GTCCCACCTGCACGCCGACCACCACACGGGCTTGCT...GCCATCCTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp GAAGTGAGCAGAGCGCCGCCAGGCCAGGGAAGGCAGGCCAAGTCCTCGCCAGGGAAGCAGACCTTCATGTaGTCAAAGGCGATGCCAACT +
Preference number: 4 (lower is better)
Translates to: EVSRAPPGQGRQAKSSPGKQTFM*SKAMPT
Trigger: AGTTGGCATCGCCTTTGACCACATGAAGGTCTGCTT...CCCTGGCGAGGACTTGGCCTGCCTTCCCTGGCCTGGCGGCGCTCTGCTCACTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR CCA 90 bp GTGTGCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAGGGTTCTCTGTCCTCTaGGCTGTCTGCCTGCTGGGT +
Preference number: 4 (lower is better)
Translates to: VCAGSHQGDRCGFHTGQRGFSVL*AVCLLG
Trigger: ACCCAGCAGGCAGACAGCCCAGAGGACAGAGAACCC...TCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGCACAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp GTGTGCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGATGGGCCCGCTTCTGTTaGGGTTCTCTGTCCTCTGGG +
Preference number: 4 (lower is better)
Translates to: VCAGSHQGDRCGFHTGQRWARFC*GSLSSG
Trigger: CCCAGAGGACAGAGAACCCCAACAGAAGCGGGCCCA...TCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGCACAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp GCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGGCTCTGTGGGCTGTGTaGTTCATCTGTGTGGGCCCG +
Preference number: 4 (lower is better)
Translates to: ALAPTKVTDVASTQGREQALWAV*FICVGP
Trigger: CGGGCCCACACAGATGAACCACACAGCCCACAGAGC...CTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR TCA 90 bp GTGTGCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAGGCGGAGCTGATACTTaGGGAGGCATTCACCCCGAA +
Preference number: 4 (lower is better)
Translates to: VCAGSHQGDRCGFHTGQRGGADT*GGIHPE
Trigger: TTCGGGGTGAATGCCTCCTCAAGTATCAGCTCCGCC...TCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGCACAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR GCA 90 bp AAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGATCCCGCCGCCACCACCTaGAGGTACACGGTGTTCGGG +
Preference number: 4 (lower is better)
Translates to: KVTDVASTQGREQPTVQDPAATT*RYTVFG
Trigger: CCCGAACACCGTGTACCTGCAGGTGGTGGCGGCGGG...ATCCTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR GCA 90 bp GCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGGGGTCCCTGCCCCATaGTTTCCTGTTGGCACCTGC +
Preference number: 4 (lower is better)
Translates to: APTKVTDVASTQGREQPTGVPAP*FPVGTC
Trigger: GCAGGTGCCAACAGGAAAGCATGGGGCAGGGACCCC...TGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR GCA 90 bp GAGGAAGTGAGCAGAGCGCCGCCAGGCCAGGGAAGGCAGGCCAAGTCCTCGCCAAGAGATGCCAACGCATaGTCTCTCTGCAGCAAGATA +
Preference number: 4 (lower is better)
Translates to: EEVSRAPPGQGRQAKSSPRDANA*SLCSKI
Trigger: TATCTTGCTGCAGAGAGAGCATGCGTTGGCATCTCT...TGGCGAGGACTTGGCCTGCCTTCCCTGGCCTGGCGGCGCTCTGCTCACTTCCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR GCA 90 bp TCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTGTCCTCTGGGCTGTCTaGCTGCTGGGTCAGGAGGGC +
Preference number: 4 (lower is better)
Translates to: SHQGDRCGFHTGQRTAYSVLWAV*LLGQEG
Trigger: GCCCTCCTGACCCAGCAGGCAGACAGCCCAGAGGAC...ACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp CCGCCAGGCCAGGGAAGGCAGGCCAAGTCCTCGCCAGGGAAGGCAGGCCAAGTCCAGACAGAACACATTTaGGAAGCCCGGTTTCCTTTA +
Preference number: 4 (lower is better)
Translates to: PPGQGRQAKSSPGKAGQVQTEHI*EARFPL
Trigger: TAAAGGAAACCGGGCTTCCCAAATGTGTTCTGTCTG...GACTTGGCCTGCCTTCCCTGGCGAGGACTTGGCCTGCCTTCCCTGGCCTGGCGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR CCA 90 bp GGCCCCTGGCAGATGGGAGCTCCCAGCCATGACCATGGAGTACTGCAGGCTGACACCACAAGCAAGGGCTaGAAGGGTTTCCCCAGAGAT +
Preference number: 4 (lower is better)
Translates to: GPWQMGAPSHDHGVLQADTTSKG*KGFPRD
Trigger: ATCTCTGGGGAAACCCTTCCAGCCCTTGCTTGTGGT...GTCAGCCTGCAGTACTCCATGGTCATGGCTGGGAGCTCCCATCTGCCAGGGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101049.9
CDS-3UTR CCA 90 bp GTTGTGTGCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGGAGCCTCACAGGGCATaGTATCCCCCGAGTAGACGA +
Preference number: 4 (lower is better)
Translates to: VVCAGSHQGDRCGFHTGQEPHRA*YPPSRR
Trigger: TCGTCTACTCGGGGGATACCATGCCCTGTGAGGCTC...CTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGCACACAAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR TCA 90 bp TGTGCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAAGAACTGTTGGCACGCTaGGGGTGGACCCTTCCTTAC +
Preference number: 4 (lower is better)
Translates to: CALAPTKVTDVASTQGREELLAR*GWTLPY
Trigger: GTAAGGAAGGGTCCACCCTCAGCGTGCCAACAGTTC...TTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGCACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108697.8
CDS-3UTR GCA 90 bp GCCCCTGGCAGATGGGAGCTCCCAGCCATGACCATGGAGTACTGCAGGCTGACTCTCTGGGATGGCTGTTaGTTTCCACACCTCCGTTCA +
Preference number: 4 (lower is better)
Translates to: APGRWELPAMTMEYCRLTLWDGC*FPHLRS
Trigger: TGAACGGAGGTGTGGAAAGCAACAGCCATCCCAGAG...AGTCAGCCTGCAGTACTCCATGGTCATGGCTGGGAGCTCCCATCTGCCAGGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101049.9
CDS-3UTR GCA 90 bp AGTGAGCAGAGCGCCGCCAGGCCAGGGAAGGCAGGCCAAGTCCTCGCCAGGGAAAAGGCCCAGCTCCTTTaGTTTAAGCACCAAGAAGTT +
Preference number: 4 (lower is better)
Translates to: SEQSAARPGKAGQVLAREKAQLL*FKHQEV
Trigger: AACTTCTTGGTGCTTAAAGCAAAGGAGCTGGGCCTT...TTCCCTGGCGAGGACTTGGCCTGCCTTCCCTGGCCTGGCGGCGCTCTGCTCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR GCA 90 bp TGCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAAGCAGCAATGATGGGTaGAATGGCGGCCGTCCCAAC +
Preference number: 4 (lower is better)
Translates to: CAGSHQGDRCGFHTGQRTSSNDG*NGGRPN
Trigger: GTTGGGACGGCCGCCATTGCACCCATCATTGCTGCT...TGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR GCA 90 bp TCGACTGTGTTCGCCTCCAGGAGTCGGAGGCCCCTGGCAGATGGGAGCTCCCAGAGAGATGCCAACGCATaGTCTCTCTGCAGCAAGATA +
Preference number: 4 (lower is better)
Translates to: STVFASRSRRPLADGSSQRDANA*SLCSKI
Trigger: TATCTTGCTGCAGAGAGAGCATGCGTTGGCATCTCT...CTGGGAGCTCCCATCTGCCAGGGGCCTCCGACTCCTGGAGGCGAACACAGTCGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101049.9
CDS-3UTR GCA 90 bp GCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCGCACAGCCAAAAGCATaGTTGCAGTGCCGTACCAGG +
Preference number: 4 (lower is better)
Translates to: AGSHQGDRCGFHTGQRTAAQPKA*LQCRTR
Trigger: CCTGGTACGGCACTGCAAGCATGCTTTTGGCTGTGC...GGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR GCA 90 bp CAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGATCTGGGCTGTCTGCCTaGTGGGTCAGGAGGGCTGCT +
Preference number: 4 (lower is better)
Translates to: QGDRCGFHTGQRTAYSPGSGLSA*WVRRAA
Trigger: AGCAGCCCTCCTGACCCAGCAGGCAGACAGCCCAGA...TCCTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp AGTGAGCAGAGCGCCGCCAGGCCAGGGAAGGCAGGCCAAGTCCTCGCCAGGGAATTTCTCCAGCTGTGGTaGTCCAGACAGAACACATTT +
Preference number: 4 (lower is better)
Translates to: SEQSAARPGKAGQVLAREFLQLW*SRQNTF
Trigger: AAATGTGTTCTGTCTGGACCACCACAGCTGGAGAAA...TTCCCTGGCGAGGACTTGGCCTGCCTTCCCTGGCCTGGCGGCGCTCTGCTCACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR CCA 90 bp AGTGAGCAGAGCGCCGCCAGGCCAGGGAAGGCAGGCCAAGTCCTCGCCAGGGAAATATTTCTCCAGCTGTaGTGGTCCAGACAGAACACA +
Preference number: 4 (lower is better)
Translates to: SEQSAARPGKAGQVLAREIFLQL*WSRQNT
Trigger: TGTGTTCTGTCTGGACCACCACAGCTGGAGAAATAT...TTCCCTGGCGAGGACTTGGCCTGCCTTCCCTGGCCTGGCGGCGCTCTGCTCACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR CCA 90 bp GCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCCATGCTTTCCTGTTaGCACCTGCACTGCTGTCCT +
Preference number: 4 (lower is better)
Translates to: ALAPTKVTDVASTQGREQPMLSC*HLHCCP
Trigger: AGGACAGCAGTGCAGGTGCCAACAGGAAAGCATGGG...CTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp GGCCCCTGGCAGATGGGAGCTCCCAGCCATGACCATGGAGTACTGCAGGCTGACGCATCAGCCTCTGCCTaGTACCTTTTAAAGGTGTCG +
Preference number: 4 (lower is better)
Translates to: GPWQMGAPSHDHGVLQADASASA*YLLKVS
Trigger: CGACACCTTTAAAAGGTACCAGGCAGAGGCTGATGC...GTCAGCCTGCAGTACTCCATGGTCATGGCTGGGAGCTCCCATCTGCCAGGGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101049.9
CDS-3UTR CCA 90 bp TGTGCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAAGATTCTGGGGCTATGTaGACCACCAGCGCCACAGGT +
Preference number: 4 (lower is better)
Translates to: CALAPTKVTDVASTQGREDSGAM*TTSATG
Trigger: ACCTGTGGCGCTGGTGGTCCACATAGCCCCAGAATC...TTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGCACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp GGCCCCTGGCAGATGGGAGCTCCCAGCCATGACCATGGAGTACTGCAGGCTGACTTTCTCTGCTGGGGCTaGGTTTTCCTGCACGTTCTT +
Preference number: 4 (lower is better)
Translates to: GPWQMGAPSHDHGVLQADFLCWG*VFLHVL
Trigger: AAGAACGTGCAGGAAAACCCAGCCCCAGCAGAGAAA...GTCAGCCTGCAGTACTCCATGGTCATGGCTGGGAGCTCCCATCTGCCAGGGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000101049.9
CDS-3UTR CCA 90 bp GCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACATGGTCGGCGTGCAGGTaGGACACAAACACAGCCGTG +
Preference number: 4 (lower is better)
Translates to: APTKVTDVASTQGREQPTWSACR*DTNTAV
Trigger: CACGGCTGTGTTTGTGTCCCACCTGCACGCCGACCA...TGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp GCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTGTGGTTCATCTGTGTaGGCCCGCTTCTGTTGGGGT +
Preference number: 4 (lower is better)
Translates to: AGSHQGDRCGFHTGQRTACGSSV*ARFCWG
Trigger: ACCCCAACAGAAGCGGGCCCACACAGATGAACCACA...GGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp CCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCGCTCTGTGGGCTGTGTaGTTCATCTGTGTGGGCCCG +
Preference number: 4 (lower is better)
Translates to: PTKVTDVASTQGREQPTVALWAV*FICVGP
Trigger: CGGGCCCACACAGATGAACCACACAGCCCACAGAGC...GACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR GCA 90 bp GCTGCGGGGCAGTCACAACATCCTGTGCTGCCTCATGAGGAAGTGAGCAGAGCGCTCTGGGATGGCTGTTaGTTTCCACACCTCCGTTCA +
Preference number: 4 (lower is better)
Translates to: AAGQSQHPVLPHEEVSRALWDGC*FPHLRS
Trigger: TGAACGGAGGTGTGGAAAGCAACAGCCATCCCAGAG...CGCTCTGCTCACTTCCTCATGAGGCAGCACAGGATGTTGTGACTGCCCCGCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR GCA 90 bp GATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGATGGCTTAGACCACCAGCGCCACAGGTaGATCAGCCTCTGCCTGGTA +
Preference number: 4 (lower is better)
Translates to: DVASTQGREQPTVQDGLDHQRHR*ISLCLV
Trigger: TACCAGGCAGAGGCTGATGCACCTGTGGCGCTGGTG...GTCTAAGCCATCCTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR GCA 90 bp TTGTGTGCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGATCTGAATCTTGTGGCTaGGCAGGTTGTGGACCGAGG +
Preference number: 4 (lower is better)
Translates to: LCALAPTKVTDVASTQGRSESCG*AGCGPR
Trigger: CCTCGGTCCACAACCTGCGCAGCCACAAGATTCAGA...TCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGCACACAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR GCA 90 bp TGTGCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAAGGGGCTGGGTTTTCCTaGACGTTCTTCCGATACTCC +
Preference number: 4 (lower is better)
Translates to: CALAPTKVTDVASTQGREGAGFS*TFFRYS
Trigger: GGAGTATCGGAAGAACGTGCAGGAAAACCCAGCCCC...TTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR GCA 90 bp GGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACGGGGCTGGGTTTTCCTaGACGTTCTTCCGATACTCC +
Preference number: 4 (lower is better)
Translates to: GSHQGDRCGFHTGQRTAYGAGFS*TFFRYS
Trigger: GGAGTATCGGAAGAACGTGCAGGAAAACCCAGCCCC...GTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR GCA 90 bp GGCCCCTGGCAGATGGGAGCTCCCAGCCATGACCATGGAGTACTGCAGGCTGACACAACTGCCCAAAAGTaGCTTCTCCACAATCCAGGA +
Preference number: 4 (lower is better)
Translates to: GPWQMGAPSHDHGVLQADTTAQK*LLHNPG
Trigger: TCCTGGATTGTGGAGAAGGCACTTTTGGGCAGTTGT...GTCAGCCTGCAGTACTCCATGGTCATGGCTGGGAGCTCCCATCTGCCAGGGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101049.9
CDS-3UTR GCA 90 bp CTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTAGCCAAAAGCATGCTTaGAGTGCCGTACCAGGCAGG +
Preference number: 4 (lower is better)
Translates to: LAPTKVTDVASTQGREQPSQKHA*SAVPGR
Trigger: CCTGCCTGGTACGGCACTGCAAGCATGCTTTTGGCT...AGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR GCA 90 bp GTGTGCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAGCTCCCTCTTCTCCCTaGGTTCCACCATCTCTTCAA +
Preference number: 4 (lower is better)
Translates to: VCAGSHQGDRCGFHTGQRAPSSP*VPPSLQ
Trigger: TTGAAGAGATGGTGGAACGCAGGGAGAAGAGGGAGC...TCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGCACAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp GCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCCTCATCCTTGTATTCTaGTGCAGAGTGAGGCCGCAC +
Preference number: 4 (lower is better)
Translates to: AGSHQGDRCGFHTGQRTALILVF*CRVRPH
Trigger: GTGCGGCCTCACTCTGCACCAGAATACAAGGATGAG...GGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp GTTGTGTGCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGTGTTGGGAGATGTTCTaGGGCTCTGGGATGGCTGTT +
Preference number: 4 (lower is better)
Translates to: VVCAGSHQGDRCGFHTGQCWEMF*GSGMAV
Trigger: AACAGCCATCCCAGAGCCCCAGAACATCTCCCAACA...CTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGCACACAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp GCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTGTTGGGAGATGTTCTaGGGCTCTGGGATGGCTGTT +
Preference number: 4 (lower is better)
Translates to: AGSHQGDRCGFHTGQRTACWEMF*GSGMAV
Trigger: AACAGCCATCCCAGAGCCCCAGAACATCTCCCAACA...GGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp GTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGATGGCGGGAAGATGTCAGGGTaGATGAGGCTGAGCTGGGTC +
Preference number: 4 (lower is better)
Translates to: VTDVASTQGREQPTVQDGGKMSG*MRLSWV
Trigger: GACCCAGCTCAGCCTCATCCACCCTGACATCTTCCC...GCCATCCTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp TGTGCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAATCCTCCACACTCTCCTaGAAACTGGGGAGCTCCAAG +
Preference number: 4 (lower is better)
Translates to: CALAPTKVTDVASTQGRESSTLS*KLGSSK
Trigger: CTTGGAGCTCCCCAGTTTCCAGGAGAGTGTGGAGGA...TTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp AAGGCTGCGGGGCAGTCACAACATCCTGTGCTGCCTCATGAGGAAGTGAGCAGAGCATCTTTCCCCATCTaGACCAGAGCCTCACAGGGC +
Preference number: 4 (lower is better)
Translates to: KAAGQSQHPVLPHEEVSRASFPI*TRASQG
Trigger: GCCCTGTGAGGCTCTGGTCCAGATGGGGAAAGATGC...TCTGCTCACTTCCTCATGAGGCAGCACAGGATGTTGTGACTGCCCCGCAGCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR CCA 90 bp GCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGCATCTTTCCCCATCTaGACCAGAGCCTCACAGGGC +
Preference number: 4 (lower is better)
Translates to: APTKVTDVASTQGREQPTASFPI*TRASQG
Trigger: GCCCTGTGAGGCTCTGGTCCAGATGGGGAAAGATGC...TGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp GTTGTGTGCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGCCCACATTAATAGCCTaGGAGGTGGTGCTGTGTGTC +
Preference number: 4 (lower is better)
Translates to: VVCAGSHQGDRCGFHTGQPTLIA*EVVLCV
Trigger: GACACACAGCACCACCTCCCAGGCTATTAATGTGGG...CTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGCACACAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp GTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGATGGCGTGGGGGAATCAGCTTaGGCACTGTCGGGAAGTCTC +
Preference number: 4 (lower is better)
Translates to: VTDVASTQGREQPTVQDGVGESA*ALSGSL
Trigger: GAGACTTCCCGACAGTGCCCAAGCTGATTCCCCCAC...GCCATCCTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp CACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGGTTCTCTGTCCTCTaGGCTGTCTGCCTGCTGGGT +
Preference number: 4 (lower is better)
Translates to: HQGDRCGFHTGQRTAYSPGFSVL*AVCLLG
Trigger: ACCCAGCAGGCAGACAGCCCAGAGGACAGAGAACCC...TGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR TCA 90 bp ACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGGCGGAGCTGATACTTaGGGAGGCATTCACCCCGAA +
Preference number: 4 (lower is better)
Translates to: TKVTDVASTQGREQPTVQGGADT*GGIHPE
Trigger: TTCGGGGTGAATGCCTCCTCAAGTATCAGCTCCGCC...CTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR TCA 90 bp GGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGATGGCTCTTGGGGCGGAGCTaGTACTTGAGGAGGCATTCA +
Preference number: 4 (lower is better)
Translates to: GDRCGFHTGQRTAYSPGWLLGRS*YLRRHS
Trigger: TGAATGCCTCCTCAAGTATCAGCTCCGCCCCAAGAG...CCATCCTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR GCA 90 bp GCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACATTTCCTGTTGGCACCTaGACTGCTGTCCTCTGGAGG +
Preference number: 4 (lower is better)
Translates to: APTKVTDVASTQGREQPTFPVGT*TAVLWR
Trigger: CCTCCAGAGGACAGCAGTGCAGGTGCCAACAGGAAA...TGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR GCA 90 bp CACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAAGCAGCAATGATGGGTaGAATGGCGGCCGTCCCAAC +
Preference number: 4 (lower is better)
Translates to: HQGDRCGFHTGQRTAYSPSSNDG*NGGRPN
Trigger: GTTGGGACGGCCGCCATTGCACCCATCATTGCTGCT...TGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR GCA 90 bp GTTGTGTGCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAACCTCTCCATCCACTaGTGGTATCTGCTGTCGATG +
Preference number: 4 (lower is better)
Translates to: VVCAGSHQGDRCGFHTGQNLSIH*WYLLSM
Trigger: CATCGACAGCAGATACCAGCAGTGGATGGAGAGGTT...CTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGCACACAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR GCA 90 bp AAGGCTGCGGGGCAGTCACAACATCCTGTGCTGCCTCATGAGGAAGTGAGCAGATCTGAATCTTGTGGCTaGGCAGGTTGTGGACCGAGG +
Preference number: 4 (lower is better)
Translates to: KAAGQSQHPVLPHEEVSRSESCG*AGCGPR
Trigger: CCTCGGTCCACAACCTGCGCAGCCACAAGATTCAGA...TCTGCTCACTTCCTCATGAGGCAGCACAGGATGTTGTGACTGCCCCGCAGCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR GCA 90 bp GATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGATGGCTTAGACGTGTGGTGGTCGGCGTaGAGGTGGGACACAAACACA +
Preference number: 4 (lower is better)
Translates to: DVASTQGREQPTVQDGLDVWWSA*RWDTNT
Trigger: TGTGTTTGTGTCCCACCTGCACGCCGACCACCACAC...GTCTAAGCCATCCTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR GCA 90 bp TCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTGTGTGGTGGTCGGCGTaGAGGTGGGACACAAACACA +
Preference number: 4 (lower is better)
Translates to: SHQGDRCGFHTGQRTAYSVWWSA*RWDTNT
Trigger: TGTGTTTGTGTCCCACCTGCACGCCGACCACCACAC...ACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp GTGAAGGCTGCGGGGCAGTCACAACATCCTGTGCTGCCTCATGAGGAAGTGAGCCTCATCCTTGTATTCTaGTGCAGAGTGAGGCCGCAC +
Preference number: 4 (lower is better)
Translates to: VKAAGQSQHPVLPHEEVSLILVF*CRVRPH
Trigger: GTGCGGCCTCACTCTGCACCAGAATACAAGGATGAG...GCTCACTTCCTCATGAGGCAGCACAGGATGTTGTGACTGCCCCGCAGCCTTCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR CCA 90 bp GACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGATGGCTTGATTCTGGGGCTATGTaGACCACCAGCGCCACAGGT +
Preference number: 4 (lower is better)
Translates to: DRCGFHTGQRTAYSPGWLDSGAM*TTSATG
Trigger: ACCTGTGGCGCTGGTGGTCCACATAGCCCCAGAATC...AAGCCATCCTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp TTGTGTGCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGCTTCTTTTCTCTGCTaGGGCTGGGTTTTCCTGCAC +
Preference number: 4 (lower is better)
Translates to: LCALAPTKVTDVASTQGRASFLC*GWVFLH
Trigger: GTGCAGGAAAACCCAGCCCCAGCAGAGAAAAGAAGC...TCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGCACACAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp GTTGTGTGCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGATTTCGGATCTTCATTaGGATGGCAGACCCCGTACC +
Preference number: 4 (lower is better)
Translates to: VVCAGSHQGDRCGFHTGQISDLH*DGRPRT
Trigger: GGTACGGGGTCTGCCATCCCAATGAAGATCCGAAAT...CTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGCACACAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp AGATTTATTAACCCTGAGCTTGGCACATGGTCTTGTTTCGGTGAAGGCTGCGGGAGCAAGCCCGTGTGGTaGTCGGCGTGCAGGTGGGAC +
Preference number: 4 (lower is better)
Translates to: RFINPELGTWSCFGEGCGSKPVW*SACRWD
Trigger: GTCCCACCTGCACGCCGACCACCACACGGGCTTGCT...CCCGCAGCCTTCACCGAAACAAGACCATGTGCCAAGCTCAGGGTTAATAAATCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR CCA 90 bp TCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTGAGCCTCACAGGGCATaGTATCCCCCGAGTAGACGA +
Preference number: 4 (lower is better)
Translates to: SHQGDRCGFHTGQRTAYSEPHRA*YPPSRR
Trigger: TCGTCTACTCGGGGGATACCATGCCCTGTGAGGCTC...ACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp GTGAAGGCTGCGGGGCAGTCACAACATCCTGTGCTGCCTCATGAGGAAGTGAGCCCCACATTAATAGCCTaGGAGGTGGTGCTGTGTGTC +
Preference number: 4 (lower is better)
Translates to: VKAAGQSQHPVLPHEEVSPTLIA*EVVLCV
Trigger: GACACACAGCACCACCTCCCAGGCTATTAATGTGGG...GCTCACTTCCTCATGAGGCAGCACAGGATGTTGTGACTGCCCCGCAGCCTTCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR CCA 90 bp TGTGCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACCCACATTAATAGCCTaGGAGGTGGTGCTGTGTGTC +
Preference number: 4 (lower is better)
Translates to: CALAPTKVTDVASTQGREPTLIA*EVVLCV
Trigger: GACACACAGCACCACCTCCCAGGCTATTAATGTGGG...TTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGCACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp ACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGTGGGGGAATCAGCTTaGGCACTGTCGGGAAGTCTC +
Preference number: 4 (lower is better)
Translates to: TKVTDVASTQGREQPTVQVGESA*ALSGSL
Trigger: GAGACTTCCCGACAGTGCCCAAGCTGATTCCCCCAC...CTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp TTATTAACCCTGAGCTTGGCACATGGTCTTGTTTCGGTGAAGGCTGCGGGGCAGGGGTTCTCTGTCCTCTaGGCTGTCTGCCTGCTGGGT +
Preference number: 4 (lower is better)
Translates to: LLTLSLAHGLVSVKAAGQGFSVL*AVCLLG
Trigger: ACCCAGCAGGCAGACAGCCCAGAGGACAGAGAACCC...CTGCCCCGCAGCCTTCACCGAAACAAGACCATGTGCCAAGCTCAGGGTTAATAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR TCA 90 bp TTGTGTGCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGACACAGATGGGCAGGATaGATCCTTCATCAGGACACT +
Preference number: 4 (lower is better)
Translates to: LCALAPTKVTDVASTQGRHRWAG*ILHQDT
Trigger: AGTGTCCTGATGAAGGATTCATCCTGCCCATCTGTG...TCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGCACACAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR TCA 90 bp TTATTAACCCTGAGCTTGGCACATGGTCTTGTTTCGGTGAAGGCTGCGGGGCAGGGCGGAGCTGATACTTaGGGAGGCATTCACCCCGAA +
Preference number: 4 (lower is better)
Translates to: LLTLSLAHGLVSVKAAGQGGADT*GGIHPE
Trigger: TTCGGGGTGAATGCCTCCTCAAGTATCAGCTCCGCC...CTGCCCCGCAGCCTTCACCGAAACAAGACCATGTGCCAAGCTCAGGGTTAATAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR TCA 90 bp GTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGATGGCACCTCTGCCCCTTTCTaGAGGCATTTGGCAGGAATC +
Preference number: 4 (lower is better)
Translates to: VTDVASTQGREQPTVQDGTSAPF*RHLAGI
Trigger: GATTCCTGCCAAATGCCTTCAGAAAGGGGCAGAGGT...GCCATCCTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR TCA 90 bp GCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGACTTTCCAGCCAGATaGATGTACCAGTGCACAGCC +
Preference number: 4 (lower is better)
Translates to: APTKVTDVASTQGREQPTDFPAR*MYQCTA
Trigger: GGCTGTGCACTGGTACATTCATCTGGCTGGAAAGTC...TGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR TCA 90 bp CCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCATCTTGGCGTACCGCTaGCTGAAGTGGTTCAGCATG +
Preference number: 4 (lower is better)
Translates to: PTKVTDVASTQGREQPTVILAYR*LKWFSM
Trigger: CATGCTGAACCACTTCAGTCAGCGGTACGCCAAGAT...GACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR GCA 90 bp CACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCATCTGAATCTTGTGGCTaGGCAGGTTGTGGACCGAGG +
Preference number: 4 (lower is better)
Translates to: HQGDRCGFHTGQRTAYSPSESCG*AGCGPR
Trigger: CCTCGGTCCACAACCTGCGCAGCCACAAGATTCAGA...TGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR GCA 90 bp GTGTGCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAAGAGATGCCAACGCATaGTCTCTCTGCAGCAAGATA +
Preference number: 4 (lower is better)
Translates to: VCAGSHQGDRCGFHTGQRRDANA*SLCSKI
Trigger: TATCTTGCTGCAGAGAGAGCATGCGTTGGCATCTCT...TCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGCACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR GCA 90 bp CACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGCACAGCCAAAAGCATaGTTGCAGTGCCGTACCAGG +
Preference number: 4 (lower is better)
Translates to: HQGDRCGFHTGQRTAYSPAQPKA*LQCRTR
Trigger: CCTGGTACGGCACTGCAAGCATGCTTTTGGCTGTGC...TGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR GCA 90 bp TTGTGTGCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGACTCTTCAATGTCACCTaGAAACAGGGCCTTCAGTGG +
Preference number: 4 (lower is better)
Translates to: LCALAPTKVTDVASTQGRLFNVT*KQGLQW
Trigger: CCACTGAAGGCCCTGTTTGCAGGTGACATTGAAGAG...TCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGCACACAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR GCA 90 bp GTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGATGGCGCTCCCTCTTCTCCCTaGGTTCCACCATCTCTTCAA +
Preference number: 4 (lower is better)
Translates to: VTDVASTQGREQPTVQDGAPSSP*VPPSLQ
Trigger: TTGAAGAGATGGTGGAACGCAGGGAGAAGAGGGAGC...GCCATCCTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp GCCCCTGGCAGATGGGAGCTCCCAGCCATGACCATGGAGTACTGCAGGCTGACTATATTTCTCCAGCTGTaGTGGTCCAGACAGAACACA +
Preference number: 4 (lower is better)
Translates to: APGRWELPAMTMEYCRLTIFLQL*WSRQNT
Trigger: TGTGTTCTGTCTGGACCACCACAGCTGGAGAAATAT...AGTCAGCCTGCAGTACTCCATGGTCATGGCTGGGAGCTCCCATCTGCCAGGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101049.9
CDS-3UTR CCA 90 bp ACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGTCTGGGGCTCTGGGATaGCTGTTGCTTTCCACACCT +
Preference number: 4 (lower is better)
Translates to: TKVTDVASTQGREQPTVQSGALG*LLLSTP
Trigger: AGGTGTGGAAAGCAACAGCCATCCCAGAGCCCCAGA...CTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp TGCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAATTTCGGATCTTCATTaGGATGGCAGACCCCGTACC +
Preference number: 4 (lower is better)
Translates to: CAGSHQGDRCGFHTGQRTISDLH*DGRPRT
Trigger: GGTACGGGGTCTGCCATCCCAATGAAGATCCGAAAT...TGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp TTATTAACCCTGAGCTTGGCACATGGTCTTGTTTCGGTGAAGGCTGCGGGGCAGGAGCCTCACAGGGCATaGTATCCCCCGAGTAGACGA +
Preference number: 4 (lower is better)
Translates to: LLTLSLAHGLVSVKAAGQEPHRA*YPPSRR
Trigger: TCGTCTACTCGGGGGATACCATGCCCTGTGAGGCTC...CTGCCCCGCAGCCTTCACCGAAACAAGACCATGTGCCAAGCTCAGGGTTAATAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR CCA 90 bp AAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGATGCATCTTTCCCCATCTaGACCAGAGCCTCACAGGGC +
Preference number: 4 (lower is better)
Translates to: KVTDVASTQGREQPTVQDASFPI*TRASQG
Trigger: GCCCTGTGAGGCTCTGGTCCAGATGGGGAAAGATGC...ATCCTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp GCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGAAGCAGACCTTCATGTaGTCAAAGGCGATGCCAACT +
Preference number: 4 (lower is better)
Translates to: ALAPTKVTDVASTQGREQKQTFM*SKAMPT
Trigger: AGTTGGCATCGCCTTTGACCACATGAAGGTCTGCTT...CTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp TCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTTGTGGTTCATCTGTGTaGGCCCGCTTCTGTTGGGGT +
Preference number: 4 (lower is better)
Translates to: SHQGDRCGFHTGQRTAYSCGSSV*ARFCWG
Trigger: ACCCCAACAGAAGCGGGCCCACACAGATGAACCACA...ACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR TCA 90 bp AAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGATCTCTTGGGGCGGAGCTaGTACTTGAGGAGGCATTCA +
Preference number: 4 (lower is better)
Translates to: KVTDVASTQGREQPTVQDLLGRS*YLRRHS
Trigger: TGAATGCCTCCTCAAGTATCAGCTCCGCCCCAAGAG...ATCCTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR TCA 90 bp GTTGTGTGCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGCCAAGGCCTCAGCTATaGATTCATCAGTATTGCAGT +
Preference number: 4 (lower is better)
Translates to: VVCAGSHQGDRCGFHTGQPRPQL*IHQYCS
Trigger: ACTGCAATACTGATGAATTCATAGCTGAGGCCTTGG...CTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGCACACAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR TCA 90 bp ACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGACTTTCCAGCCAGATaGATGTACCAGTGCACAGCC +
Preference number: 4 (lower is better)
Translates to: TKVTDVASTQGREQPTVQDFPAR*MYQCTA
Trigger: GGCTGTGCACTGGTACATTCATCTGGCTGGAAAGTC...CTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR GCA 90 bp GTGTGCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAAAGGCCCAGCTCCTTTaGTTTAAGCACCAAGAAGTT +
Preference number: 4 (lower is better)
Translates to: VCAGSHQGDRCGFHTGQRKAQLL*FKHQEV
Trigger: AACTTCTTGGTGCTTAAAGCAAAGGAGCTGGGCCTT...TCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGCACAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR GCA 90 bp GCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGAGTATTGGAGACCTCTaGCCCTTTCTGAAGGCATTT +
Preference number: 4 (lower is better)
Translates to: ALAPTKVTDVASTQGREQSIGDL*PFLKAF
Trigger: AAATGCCTTCAGAAAGGGGCAGAGGTCTCCAATACT...CTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR GCA 90 bp AAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGATAGCCAAAAGCATGCTTaGAGTGCCGTACCAGGCAGG +
Preference number: 4 (lower is better)
Translates to: KVTDVASTQGREQPTVQDSQKHA*SAVPGR
Trigger: CCTGCCTGGTACGGCACTGCAAGCATGCTTTTGGCT...ATCCTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp GCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCCAGACAGAACACATTTaGGAAGCCCGGTTTCCTTTA +
Preference number: 4 (lower is better)
Translates to: AGSHQGDRCGFHTGQRTAQTEHI*EARFPL
Trigger: TAAAGGAAACCGGGCTTCCCAAATGTGTTCTGTCTG...GGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp AAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGATCCCATGCTTTCCTGTTaGCACCTGCACTGCTGTCCT +
Preference number: 4 (lower is better)
Translates to: KVTDVASTQGREQPTVQDPMLSC*HLHCCP
Trigger: AGGACAGCAGTGCAGGTGCCAACAGGAAAGCATGGG...ATCCTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp CTTGTTTCGGTGAAGGCTGCGGGGCAGTCACAACATCCTGTGCTGCCTCATGAGCTCTCCATCCACTGCTaGTATCTGCTGTCGATGAGT +
Preference number: 4 (lower is better)
Translates to: LVSVKAAGQSQHPVLPHELSIHC*YLLSMS
Trigger: ACTCATCGACAGCAGATACCAGCAGTGGATGGAGAG...CTCATGAGGCAGCACAGGATGTTGTGACTGCCCCGCAGCCTTCACCGAAACAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR CCA 90 bp AGATTTATTAACCCTGAGCTTGGCACATGGTCTTGTTTCGGTGAAGGCTGCGGGTGGTCGGCGTGCAGGTaGGACACAAACACAGCCGTG +
Preference number: 4 (lower is better)
Translates to: RFINPELGTWSCFGEGCGWSACR*DTNTAV
Trigger: CACGGCTGTGTTTGTGTCCCACCTGCACGCCGACCA...CCCGCAGCCTTCACCGAAACAAGACCATGTGCCAAGCTCAGGGTTAATAAATCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR CCA 90 bp GACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGATGGCTTACCACAAGCAAGGGCTaGAAGGGTTTCCCCAGAGAT +
Preference number: 4 (lower is better)
Translates to: DRCGFHTGQRTAYSPGWLTTSKG*KGFPRD
Trigger: ATCTCTGGGGAAACCCTTCCAGCCCTTGCTTGTGGT...AAGCCATCCTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR TCA 90 bp TTGTGTGCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGACCAAGGCCTCAGCTATaGATTCATCAGTATTGCAGT +
Preference number: 4 (lower is better)
Translates to: LCALAPTKVTDVASTQGRPRPQL*IHQYCS
Trigger: ACTGCAATACTGATGAATTCATAGCTGAGGCCTTGG...TCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGCACACAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR TCA 90 bp TTATTAACCCTGAGCTTGGCACATGGTCTTGTTTCGGTGAAGGCTGCGGGGCAGGACTTTCCAGCCAGATaGATGTACCAGTGCACAGCC +
Preference number: 4 (lower is better)
Translates to: LLTLSLAHGLVSVKAAGQDFPAR*MYQCTA
Trigger: GGCTGTGCACTGGTACATTCATCTGGCTGGAAAGTC...CTGCCCCGCAGCCTTCACCGAAACAAGACCATGTGCCAAGCTCAGGGTTAATAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR GCA 90 bp GCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGTCCTCAAGTGAAGCTTaGAGACAAAAGCTACCACTA +
Preference number: 4 (lower is better)
Translates to: ALAPTKVTDVASTQGREQSSSEA*RQKLPL
Trigger: TAGTGGTAGCTTTTGTCTGCAAGCTTCACTTGAGGA...CTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR GCA 90 bp TGTGCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAAAAGGCCCAGCTCCTTTaGTTTAAGCACCAAGAAGTT +
Preference number: 4 (lower is better)
Translates to: CALAPTKVTDVASTQGREKAQLL*FKHQEV
Trigger: AACTTCTTGGTGCTTAAAGCAAAGGAGCTGGGCCTT...TTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR GCA 90 bp TCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTAACCTCTCCATCCACTaGTGGTATCTGCTGTCGATG +
Preference number: 4 (lower is better)
Translates to: SHQGDRCGFHTGQRTAYSNLSIH*WYLLSM
Trigger: CATCGACAGCAGATACCAGCAGTGGATGGAGAGGTT...ACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR GCA 90 bp CCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCACAACTGCCCAAAAGTaGCTTCTCCACAATCCAGGA +
Preference number: 4 (lower is better)
Translates to: PTKVTDVASTQGREQPTVTTAQK*LLHNPG
Trigger: TCCTGGATTGTGGAGAAGGCACTTTTGGGCAGTTGT...GACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR GCA 90 bp CAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGACTCTTCAATGTCACCTaGAAACAGGGCCTTCAGTGG +
Preference number: 4 (lower is better)
Translates to: QGDRCGFHTGQRTAYSPGLFNVT*KQGLQW
Trigger: CCACTGAAGGCCCTGTTTGCAGGTGACATTGAAGAG...TCCTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp CAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGATCCTGCATAAGTCGTTaGACGCCTTCTCCGCAGTTA +
Preference number: 4 (lower is better)
Translates to: QGDRCGFHTGQRTAYSPGSCISR*TPSPQL
Trigger: TAACTGCGGAGAAGGCGTCCAACGACTTATGCAGGA...TCCTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp TTGTGTGCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGATTTCTCCAGCTGTGGTaGTCCAGACAGAACACATTT +
Preference number: 4 (lower is better)
Translates to: LCALAPTKVTDVASTQGRFLQLW*SRQNTF
Trigger: AAATGTGTTCTGTCTGGACCACCACAGCTGGAGAAA...TCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGCACACAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp CTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTATATTTCTCCAGCTGTaGTGGTCCAGACAGAACACA +
Preference number: 4 (lower is better)
Translates to: LAPTKVTDVASTQGREQPIFLQL*WSRQNT
Trigger: TGTGTTCTGTCTGGACCACCACAGCTGGAGAAATAT...AGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp ACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGATGGCTTACTCATCCTTGTATTCTaGTGCAGAGTGAGGCCGCAC +
Preference number: 4 (lower is better)
Translates to: TDVASTQGREQPTVQDGLLILVF*CRVRPH
Trigger: GTGCGGCCTCACTCTGCACCAGAATACAAGGATGAG...TAAGCCATCCTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp ACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGCATCAGCCTCTGCCTaGTACCTTTTAAAGGTGTCG +
Preference number: 4 (lower is better)
Translates to: TKVTDVASTQGREQPTVQASASA*YLLKVS
Trigger: CGACACCTTTAAAAGGTACCAGGCAGAGGCTGATGC...CTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp GATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGATGGCTTAGACCTCTCCATCCACTGCTaGTATCTGCTGTCGATGAGT +
Preference number: 4 (lower is better)
Translates to: DVASTQGREQPTVQDGLDLSIHC*YLLSMS
Trigger: ACTCATCGACAGCAGATACCAGCAGTGGATGGAGAG...GTCTAAGCCATCCTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp TCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCTCTCCATCCACTGCTaGTATCTGCTGTCGATGAGT +
Preference number: 4 (lower is better)
Translates to: SHQGDRCGFHTGQRTAYSLSIHC*YLLSMS
Trigger: ACTCATCGACAGCAGATACCAGCAGTGGATGGAGAG...ACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp TTTATTAACCCTGAGCTTGGCACATGGTCTTGTTTCGGTGAAGGCTGCGGGGCATCCTCCACACTCTCCTaGAAACTGGGGAGCTCCAAG +
Preference number: 4 (lower is better)
Translates to: FINPELGTWSCFGEGCGASSTLS*KLGSSK
Trigger: CTTGGAGCTCCCCAGTTTCCAGGAGAGTGTGGAGGA...TGCCCCGCAGCCTTCACCGAAACAAGACCATGTGCCAAGCTCAGGGTTAATAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR CCA 90 bp AAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGATGCTTCTTTTCTCTGCTaGGGCTGGGTTTTCCTGCAC +
Preference number: 4 (lower is better)
Translates to: KVTDVASTQGREQPTVQDASFLC*GWVFLH
Trigger: GTGCAGGAAAACCCAGCCCCAGCAGAGAAAAGAAGC...ATCCTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp GATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGATGGCTTAGACGACCTTCTTGCTCTGTaGGCTGTGTGGTTCATCTGT +
Preference number: 4 (lower is better)
Translates to: DVASTQGREQPTVQDGLDDLLAL*AVWFIC
Trigger: ACAGATGAACCACACAGCCCACAGAGCAAGAAGGTC...GTCTAAGCCATCCTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp CAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGAGACCTTCTTGCTCTGTaGGCTGTGTGGTTCATCTGT +
Preference number: 4 (lower is better)
Translates to: QGDRCGFHTGQRTAYSPGDLLAL*AVWFIC
Trigger: ACAGATGAACCACACAGCCCACAGAGCAAGAAGGTC...TCCTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR TCA 90 bp TGCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACATTTCCTTTCCTCAAGTaGAGCTTGCAGACAAAAGCT +
Preference number: 4 (lower is better)
Translates to: CAGSHQGDRCGFHTGQRTFPFLK*SLQTKA
Trigger: AGCTTTTGTCTGCAAGCTTCACTTGAGGAAAGGAAA...TGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR TCA 90 bp CCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCGTACCAGGCAGGTCTaGAATTCTTCTAAGTCACAT +
Preference number: 4 (lower is better)
Translates to: PTKVTDVASTQGREQPTVRTRQV*NSSKSH
Trigger: ATGTGACTTAGAAGAATTTCAGACCTGCCTGGTACG...GACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR GCA 90 bp GTGAAGGCTGCGGGGCAGTCACAACATCCTGTGCTGCCTCATGAGGAAGTGAGCTCCTCAAGTGAAGCTTaGAGACAAAAGCTACCACTA +
Preference number: 4 (lower is better)
Translates to: VKAAGQSQHPVLPHEEVSSSSEA*RQKLPL
Trigger: TAGTGGTAGCTTTTGTCTGCAAGCTTCACTTGAGGA...GCTCACTTCCTCATGAGGCAGCACAGGATGTTGTGACTGCCCCGCAGCCTTCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR GCA 90 bp TGTGCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAATCCTCAAGTGAAGCTTaGAGACAAAAGCTACCACTA +
Preference number: 4 (lower is better)
Translates to: CALAPTKVTDVASTQGRESSSEA*RQKLPL
Trigger: TAGTGGTAGCTTTTGTCTGCAAGCTTCACTTGAGGA...TTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR GCA 90 bp GGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGATGGAGTATTGGAGACCTCTaGCCCTTTCTGAAGGCATTT +
Preference number: 4 (lower is better)
Translates to: GDRCGFHTGQRTAYSPGWSIGDL*PFLKAF
Trigger: AAATGCCTTCAGAAAGGGGCAGAGGTCTCCAATACT...CCATCCTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR GCA 90 bp GATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGATGGCTTAGACGTGTGTCTTCTCTACTaGTTCCTCTTCCAAGCCATC +
Preference number: 4 (lower is better)
Translates to: DVASTQGREQPTVQDGLDVCLLY*FLFQAI
Trigger: GATGGCTTGGAAGAGGAAGCAGTAGAGAAGACACAC...GTCTAAGCCATCCTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR GCA 90 bp GATTTATTAACCCTGAGCTTGGCACATGGTCTTGTTTCGGTGAAGGCTGCGGGGGCTCCCTCTTCTCCCTaGGTTCCACCATCTCTTCAA +
Preference number: 4 (lower is better)
Translates to: DLLTLSLAHGLVSVKAAGAPSSP*VPPSLQ
Trigger: TTGAAGAGATGGTGGAACGCAGGGAGAAGAGGGAGC...CCCCGCAGCCTTCACCGAAACAAGACCATGTGCCAAGCTCAGGGTTAATAAATC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR CCA 90 bp ACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGATGGCTTATCCTGCATAAGTCGTTaGACGCCTTCTCCGCAGTTA +
Preference number: 4 (lower is better)
Translates to: TDVASTQGREQPTVQDGLSCISR*TPSPQL
Trigger: TAACTGCGGAGAAGGCGTCCAACGACTTATGCAGGA...TAAGCCATCCTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp AAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGATTTTCTCTGCTGGGGCTaGGTTTTCCTGCACGTTCTT +
Preference number: 4 (lower is better)
Translates to: KVTDVASTQGREQPTVQDFLCWG*VFLHVL
Trigger: AAGAACGTGCAGGAAAACCCAGCCCCAGCAGAGAAA...ATCCTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp GTAAGGGGCAGACACCTCAATTTCCATAACTTCTTTAAAGACCGGCTTGCTGTCTGGTCGGCGTGCAGGTaGGACACAAACACAGCCGTG +
Preference number: 4 (lower is better)
Translates to: VRGRHLNFHNFFKDRLAVWSACR*DTNTAV
Trigger: CACGGCTGTGTTTGTGTCCCACCTGCACGCCGACCA...GACAGCAAGCCGGTCTTTAAAGAAGTTATGGAAATTGAGGTGTCTGCCCCTTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101049.9
CDS-3UTR CCA 90 bp AAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGATCATGTATCAGGAGGGTaGCATCTTTCCCCATCTGGA +
Preference number: 4 (lower is better)
Translates to: KVTDVASTQGREQPTVQDHVSGG*HLSPSG
Trigger: TCCAGATGGGGAAAGATGCCACCCTCCTGATACATG...ATCCTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp GATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGATGGCTTAGACAAGCAGACCTTCATGTaGTCAAAGGCGATGCCAACT +
Preference number: 4 (lower is better)
Translates to: DVASTQGREQPTVQDGLDKQTFM*SKAMPT
Trigger: AGTTGGCATCGCCTTTGACCACATGAAGGTCTGCTT...GTCTAAGCCATCCTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR TCA 90 bp TTTATTAACCCTGAGCTTGGCACATGGTCTTGTTTCGGTGAAGGCTGCGGGGCACACAGATGGGCAGGATaGATCCTTCATCAGGACACT +
Preference number: 4 (lower is better)
Translates to: FINPELGTWSCFGEGCGAHRWAG*ILHQDT
Trigger: AGTGTCCTGATGAAGGATTCATCCTGCCCATCTGTG...TGCCCCGCAGCCTTCACCGAAACAAGACCATGTGCCAAGCTCAGGGTTAATAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR TCA 90 bp CACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCACGTACCAGGCAGGTCTaGAATTCTTCTAAGTCACAT +
Preference number: 4 (lower is better)
Translates to: HQGDRCGFHTGQRTAYSPRTRQV*NSSKSH
Trigger: ATGTGACTTAGAAGAATTTCAGACCTGCCTGGTACG...TGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR GCA 90 bp ACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGATGGCTTAGTGTGTCTTCTCTACTaGTTCCTCTTCCAAGCCATC +
Preference number: 4 (lower is better)
Translates to: TDVASTQGREQPTVQDGLVCLLY*FLFQAI
Trigger: GATGGCTTGGAAGAGGAAGCAGTAGAGAAGACACAC...TAAGCCATCCTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR GCA 90 bp TTTATTAACCCTGAGCTTGGCACATGGTCTTGTTTCGGTGAAGGCTGCGGGGCACTCTTCAATGTCACCTaGAAACAGGGCCTTCAGTGG +
Preference number: 4 (lower is better)
Translates to: FINPELGTWSCFGEGCGALFNVT*KQGLQW
Trigger: CCACTGAAGGCCCTGTTTGCAGGTGACATTGAAGAG...TGCCCCGCAGCCTTCACCGAAACAAGACCATGTGCCAAGCTCAGGGTTAATAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR CCA 90 bp GACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGATGGCTTTTTCTCCAGCTGTGGTaGTCCAGACAGAACACATTT +
Preference number: 4 (lower is better)
Translates to: DRCGFHTGQRTAYSPGWLFLQLW*SRQNTF
Trigger: AAATGTGTTCTGTCTGGACCACCACAGCTGGAGAAA...AAGCCATCCTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CCA 90 bp AGATTTATTAACCCTGAGCTTGGCACATGGTCTTGTTTCGGTGAAGGCTGCGGGACCACAAGCAAGGGCTaGAAGGGTTTCCCCAGAGAT +
Preference number: 4 (lower is better)
Translates to: RFINPELGTWSCFGEGCGTTSKG*KGFPRD
Trigger: ATCTCTGGGGAAACCCTTCCAGCCCTTGCTTGTGGT...CCCGCAGCCTTCACCGAAACAAGACCATGTGCCAAGCTCAGGGTTAATAAATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR CCA 90 bp AGATTTATTAACCCTGAGCTTGGCACATGGTCTTGTTTCGGTGAAGGCTGCGGGTCCTGCATAAGTCGTTaGACGCCTTCTCCGCAGTTA +
Preference number: 4 (lower is better)
Translates to: RFINPELGTWSCFGEGCGSCISR*TPSPQL
Trigger: TAACTGCGGAGAAGGCGTCCAACGACTTATGCAGGA...CCCGCAGCCTTCACCGAAACAAGACCATGTGCCAAGCTCAGGGTTAATAAATCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR CCA 90 bp AGATTTATTAACCCTGAGCTTGGCACATGGTCTTGTTTCGGTGAAGGCTGCGGGCATGTATCAGGAGGGTaGCATCTTTCCCCATCTGGA +
Preference number: 4 (lower is better)
Translates to: RFINPELGTWSCFGEGCGHVSGG*HLSPSG
Trigger: TCCAGATGGGGAAAGATGCCACCCTCCTGATACATG...CCCGCAGCCTTCACCGAAACAAGACCATGTGCCAAGCTCAGGGTTAATAAATCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
3UTR CAA 72 bp GACACCTCAATTTCCATAACTTCTTTAAAGACCGGCTaGCTGTCTTCGACTGTGTTCGCCTCCAGGAGTCGG +
Preference number: 4 (lower is better)
Translates to: DTSISITSLKTG*LSSTVFASRSR
Trigger: CCGACTCCTGGAGGCGAACACAGTCGAAGACAGCAAGCCGGTCTTTAAAGAAGTTATGGAAATTGAGGTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101049.9
CDS-3UTR TCA 90 bp GTAAGGGGCAGACACCTCAATTTCCATAACTTCTTTAAAGACCGGCTTGCTGTCATCTTGGCGTACCGCTaGCTGAAGTGGTTCAGCATG +
Preference number: 4 (lower is better)
Translates to: VRGRHLNFHNFFKDRLAVILAYR*LKWFSM
Trigger: CATGCTGAACCACTTCAGTCAGCGGTACGCCAAGAT...GACAGCAAGCCGGTCTTTAAAGAAGTTATGGAAATTGAGGTGTCTGCCCCTTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101049.9
CDS-3UTR CCA 90 bp CTCAATTTCCATAACTTCTTTAAAGACCGGCTTGCTGTCTTCGACTGTGTTCGCTCCTCCACACTCTCCTaGAAACTGGGGAGCTCCAAG +
Preference number: 4 (lower is better)
Translates to: LNFHNFFKDRLAVFDCVRSSTLS*KLGSSK
Trigger: CTTGGAGCTCCCCAGTTTCCAGGAGAGTGTGGAGGA...GCGAACACAGTCGAAGACAGCAAGCCGGTCTTTAAAGAAGTTATGGAAATTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101049.9
CDS-3UTR TCA 90 bp CTCAATTTCCATAACTTCTTTAAAGACCGGCTTGCTGTCTTCGACTGTGTTCGCACCTCTGCCCCTTTCTaGAGGCATTTGGCAGGAATC +
Preference number: 4 (lower is better)
Translates to: LNFHNFFKDRLAVFDCVRTSAPF*RHLAGI
Trigger: GATTCCTGCCAAATGCCTTCAGAAAGGGGCAGAGGT...GCGAACACAGTCGAAGACAGCAAGCCGGTCTTTAAAGAAGTTATGGAAATTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101049.9
CDS-3UTR CCA 90 bp GTAAGGGGCAGACACCTCAATTTCCATAACTTCTTTAAAGACCGGCTTGCTGTCCATGTATCAGGAGGGTaGCATCTTTCCCCATCTGGA +
Preference number: 4 (lower is better)
Translates to: VRGRHLNFHNFFKDRLAVHVSGG*HLSPSG
Trigger: TCCAGATGGGGAAAGATGCCACCCTCCTGATACATG...GACAGCAAGCCGGTCTTTAAAGAAGTTATGGAAATTGAGGTGTCTGCCCCTTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101049.9
CDS-3UTR TCA 90 bp AGATTTATTAACCCTGAGCTTGGCACATGGTCTTGTTTCGGTGAAGGCTGCGGGTTTCCTTTCCTCAAGTaGAGCTTGCAGACAAAAGCT +
Preference number: 4 (lower is better)
Translates to: RFINPELGTWSCFGEGCGFPFLK*SLQTKA
Trigger: AGCTTTTGTCTGCAAGCTTCACTTGAGGAAAGGAAA...CCCGCAGCCTTCACCGAAACAAGACCATGTGCCAAGCTCAGGGTTAATAAATCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR CCA 90 bp GTTATTAAAATAGATTTATTAACCCTGAGCTTGGCACATGGTCTTGTTTCGGTGTGGGCCCGCTTCTGTTaGGGTTCTCTGTCCTCTGGG +
Preference number: 4 (lower is better)
Translates to: VIKIDLLTLSLAHGLVSVWARFC*GSLSSG
Trigger: CCCAGAGGACAGAGAACCCCAACAGAAGCGGGCCCA...CACCGAAACAAGACCATGTGCCAAGCTCAGGGTTAATAAATCTATTTTAATAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR CCA 90 bp GTTATTAAAATAGATTTATTAACCCTGAGCTTGGCACATGGTCTTGTTTCGGTGGCTCTGTGGGCTGTGTaGTTCATCTGTGTGGGCCCG +
Preference number: 4 (lower is better)
Translates to: VIKIDLLTLSLAHGLVSVALWAV*FICVGP
Trigger: CGGGCCCACACAGATGAACCACACAGCCCACAGAGC...CACCGAAACAAGACCATGTGCCAAGCTCAGGGTTAATAAATCTATTTTAATAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR GCA 90 bp GTTATTAAAATAGATTTATTAACCCTGAGCTTGGCACATGGTCTTGTTTCGGTGTTTCCTGTTGGCACCTaGACTGCTGTCCTCTGGAGG +
Preference number: 4 (lower is better)
Translates to: VIKIDLLTLSLAHGLVSVFPVGT*TAVLWR
Trigger: CCTCCAGAGGACAGCAGTGCAGGTGCCAACAGGAAA...CACCGAAACAAGACCATGTGCCAAGCTCAGGGTTAATAAATCTATTTTAATAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR TCA 90 bp CTCAATTTCCATAACTTCTTTAAAGACCGGCTTGCTGTCTTCGACTGTGTTCGCTTTCCTTTCCTCAAGTaGAGCTTGCAGACAAAAGCT +
Preference number: 4 (lower is better)
Translates to: LNFHNFFKDRLAVFDCVRFPFLK*SLQTKA
Trigger: AGCTTTTGTCTGCAAGCTTCACTTGAGGAAAGGAAA...GCGAACACAGTCGAAGACAGCAAGCCGGTCTTTAAAGAAGTTATGGAAATTGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101049.9
3UTR CAA 72 bp AGCTTTATTGAGTCTGAGTCCTTGCAAATACTATGCTaGGAGCCTGGGACATATACACCCAATGTCACTTGT +
Preference number: 4 (lower is better)
Translates to: SFIESESLQILC*EPGTYTPNVTC
Trigger: ACAAGTGACATTGGGTGTATATGTCCCAGGCTCCAAGCATAGTATTTGCAAGGACTCAGACTCAATAAAGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101049.9
CDS-3UTR TCA 90 bp GTTATTAAAATAGATTTATTAACCCTGAGCTTGGCACATGGTCTTGTTTCGGTGCCAAGGCCTCAGCTATaGATTCATCAGTATTGCAGT +
Preference number: 4 (lower is better)
Translates to: VIKIDLLTLSLAHGLVSVPRPQL*IHQYCS
Trigger: ACTGCAATACTGATGAATTCATAGCTGAGGCCTTGG...CACCGAAACAAGACCATGTGCCAAGCTCAGGGTTAATAAATCTATTTTAATAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR GCA 90 bp GTTATTAAAATAGATTTATTAACCCTGAGCTTGGCACATGGTCTTGTTTCGGTGAGTATTGGAGACCTCTaGCCCTTTCTGAAGGCATTT +
Preference number: 4 (lower is better)
Translates to: VIKIDLLTLSLAHGLVSVSIGDL*PFLKAF
Trigger: AAATGCCTTCAGAAAGGGGCAGAGGTCTCCAATACT...CACCGAAACAAGACCATGTGCCAAGCTCAGGGTTAATAAATCTATTTTAATAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS CCA 90 bp CCCGGGACCCGGGCCGCGCTTCTCCCGCGTACGCAGGTGTCGCAGTaGGTCTTTGGATGGCCGCGGCCGACGAGCCGAACCCTGCGACAT +
Preference number: 5 (lower is better)
Translates to: PGTRAALLPRTQVSQ*VFGWPRPTSRTLRH
Trigger: ATGTCGCAGGGTTCGGCTCGTCGGCCGCGGCCATCCAAAGACCCACTGCGACACCTGCGTACGCGGGAGAAGCGCGGCCCGGGTCCCGGG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CCA 90 bp GCCGCGCTTCTCCCGCGTACGCAGGTGTCGCAGTGGGTCTTTGGATaGCCGCGGCCGACGAGCCGAACCCTGCGACATGGTGCGCAGGCC +
Preference number: 5 (lower is better)
Translates to: AALLPRTQVSQWVFG*PRPTSRTLRHGAQA
Trigger: GGCCTGCGCACCATGTCGCAGGGTTCGGCTCGTCGGCCGCGGCCATCCAAAGACCCACTGCGACACCTGCGTACGCGGGAGAAGCGCGGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CCA 90 bp CCGGGCCGCGCTTCTCCCGCGTACGCAGGTGTCGCAGTGGGTCTTTaGATGGCCGCGGCCGACGAGCCGAACCCTGCGACATGGTGCGCA +
Preference number: 5 (lower is better)
Translates to: PGRASPAYAGVAVGL*MAAADEPNPATWCA
Trigger: TGCGCACCATGTCGCAGGGTTCGGCTCGTCGGCCGCGGCCATCCAAAGACCCACTGCGACACCTGCGTACGCGGGAGAAGCGCGGCCCGG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CCA 90 bp GTGGGTCTTTGGATGGCCGCGGCCGACGAGCCGAACCCTGCGACATaGTGCGCAGGCCAAGGGGACGCAACAGTGAGCGGAGCGCCCACA +
Preference number: 5 (lower is better)
Translates to: VGLWMAAADEPNPAT*CAGQGDATVSGAPT
Trigger: TGTGGGCGCTCCGCTCACTGTTGCGTCCCCTTGGCCTGCGCACCATGTCGCAGGGTTCGGCTCGTCGGCCGCGGCCATCCAAAGACCCAC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CAA 90 bp GAAGTGAGCAGAGCGCCGCCAGGCCAGGGAAGGCAGGCCAAGTCCTCGCCAGGGGCCACGCTCTCCTTCTaGCTCTGTGGGCTGTGTGGT +
Preference number: 5 (lower is better)
Translates to: EVSRAPPGQGRQAKSSPGATLSF*LCGLCG
Trigger: ACCACACAGCCCACAGAGCAAGAAGGAGAGCGTGGC...CCCTGGCGAGGACTTGGCCTGCCTTCCCTGGCCTGGCGGCGCTCTGCTCACTTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR CAA 90 bp CCGCCAGGCCAGGGAAGGCAGGCCAAGTCCTCGCCAGGGAAGGCAGGCCAAGTCTTGGGACTGAGCCTGTaGGGAGATGTTCTGGGGCTC +
Preference number: 5 (lower is better)
Translates to: PPGQGRQAKSSPGKAGQVLGLSL*GDVLGL
Trigger: GAGCCCCAGAACATCTCCCAACAGGCTCAGTCCCAA...GACTTGGCCTGCCTTCCCTGGCGAGGACTTGGCCTGCCTTCCCTGGCCTGGCGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR CAA 90 bp GAAGTGAGCAGAGCGCCGCCAGGCCAGGGAAGGCAGGCCAAGTCCTCGCCAGGGTTCCTGCATAAGTCGTaGGACGCCTTCTCCGCAGTT +
Preference number: 5 (lower is better)
Translates to: EVSRAPPGQGRQAKSSPGFLHKS*DAFSAV
Trigger: AACTGCGGAGAAGGCGTCCAACGACTTATGCAGGAA...CCCTGGCGAGGACTTGGCCTGCCTTCCCTGGCCTGGCGGCGCTCTGCTCACTTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS CCA 90 bp TGCAGCCAGGCCCTGAGCTGGGTAGGAGCCACCACAAGCAAGGGCTaGAAGGGTTTCCCCAGAGATGCCAACGCATGCTCTCTCTGCAGC +
Preference number: 5 (lower is better)
Translates to: CSQALSWVGATTSKG*KGFPRDANACSLCS
Trigger: GCTGCAGAGAGAGCATGCGTTGGCATCTCTGGGGAAACCCTTCCAGCCCTTGCTTGTGGTGGCTCCTACCCAGCTCAGGGCCTGGCTGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS GCA 90 bp GGGTCAGGAGGGCTGCTCGCACCAGCCGTAGCTCCCTCTTCTCCCTaGGTTCCACCATCTCTTCAATGTCACCTGCAAACAGGGCCTTCA +
Preference number: 5 (lower is better)
Translates to: GSGGLLAPAVAPSSP*VPPSLQCHLQTGPS
Trigger: TGAAGGCCCTGTTTGCAGGTGACATTGAAGAGATGGTGGAACGCAGGGAGAAGAGGGAGCTACGGCTGGTGCGAGCAGCCCTCCTGACCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CAA 90 bp GTTGTGTGCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGTTGGGACTGAGCCTGTaGGGAGATGTTCTGGGGCTC +
Preference number: 5 (lower is better)
Translates to: VVCAGSHQGDRCGFHTGQLGLSL*GDVLGL
Trigger: GAGCCCCAGAACATCTCCCAACAGGCTCAGTCCCAA...CTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGCACACAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CAA 90 bp TGCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACACCCCATGCTTTCCTGTaGGCACCTGCACTGCTGTCC +
Preference number: 5 (lower is better)
Translates to: CAGSHQGDRCGFHTGQRTPHAFL*APALLS
Trigger: GGACAGCAGTGCAGGTGCCAACAGGAAAGCATGGGG...TGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS TCA 90 bp CAGTCGAGTGTGGTATCCCTCTGCCACTCTCTCTTGGGGCGGAGCTaGTACTTGAGGAGGCATTCACCCCGAACTGTTGGCACGCTGAGG +
Preference number: 5 (lower is better)
Translates to: QSSVVSLCHSLLGRS*YLRRHSPRTVGTLR
Trigger: CCTCAGCGTGCCAACAGTTCGGGGTGAATGCCTCCTCAAGTATCAGCTCCGCCCCAAGAGAGAGTGGCAGAGGGATACCACACTCGACTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS TCA 90 bp AGCCCGTGTGGTGGTCGGCGTGCAGGTGGGACACAAACACAGCCGTaGGGCTGCATAAGACTCGGTCTATTTGCTGTCCGTAATGACGGC +
Preference number: 5 (lower is better)
Translates to: SPCGGRRAGGTQTQP*GCIRLGLFAVRNDG
Trigger: GCCGTCATTACGGACAGCAAATAGACCGAGTCTTATGCAGCCTCACGGCTGTGTTTGTGTCCCACCTGCACGCCGACCACCACACGGGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CAA 90 bp TCGACTGTGTTCGCCTCCAGGAGTCGGAGGCCCCTGGCAGATGGGAGCTCCCAGCGAGCGACTTTCAGTTaGTGTTCCTGCATAAGTCGT +
Preference number: 5 (lower is better)
Translates to: STVFASRSRRPLADGSSQRATFS*CSCISR
Trigger: ACGACTTATGCAGGAACACAAACTGAAAGTCGCTCG...CTGGGAGCTCCCATCTGCCAGGGGCCTCCGACTCCTGGAGGCGAACACAGTCGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101049.9
CDS-3UTR CAA 90 bp GCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGTCCAGGAGCACTGACTaGTCAGGGCTTAGGTTGACG +
Preference number: 5 (lower is better)
Translates to: ALAPTKVTDVASTQGREQSRSTD*SGLRLT
Trigger: CGTCAACCTAAGCCCTGACAAGTCAGTGCTCCTGGA...CTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CAA 90 bp TGCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAAGTGGGGGAATCAGCTaGGGCACTGTCGGGAAGTCT +
Preference number: 5 (lower is better)
Translates to: CAGSHQGDRCGFHTGQRTSGGIS*GTVGKS
Trigger: AGACTTCCCGACAGTGCCCAAGCTGATTCCCCCACT...TGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS TCA 90 bp GTAAGCTGGGGGAAGATGTCAGGGTGGATGAGGCTGAGCTGGGTCTaGATCTTGTGGCTGCGCAGGTTGTGGACCGAGGGGCAATTCTCA +
Preference number: 5 (lower is better)
Translates to: VSWGKMSGWMRLSWV*ILWLRRLWTEGQFS
Trigger: TGAGAATTGCCCCTCGGTCCACAACCTGCGCAGCCACAAGATTCAGACCCAGCTCAGCCTCATCCACCCTGACATCTTCCCCCAGCTTAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
ENSMUST00000132308.2
CDS TCA 90 bp GCAGGAATCATACTGACGTGGTGCAGAATCTCCTGGCAGTGGTTGTaGTACTGCTGCAGCCAGGCCCTGAGCTGGGTAGGAGCCACCACA +
Preference number: 5 (lower is better)
Translates to: AGIILTWCRISWQWL*YCCSQALSWVGATT
Trigger: TGTGGTGGCTCCTACCCAGCTCAGGGCCTGGCTGCAGCAGTATCACAACCACTGCCAGGAGATTCTGCACCACGTCAGTATGATTCCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CCA 90 bp CCTCTCCATCCACTGCTGGTATCTGCTGTCGATGAGTACAGATTCTaGGGCTATGTGGACCACCAGCGCCACAGGTGCATCAGCCTCTGC +
Preference number: 5 (lower is better)
Translates to: PLHPLLVSAVDEYRF*GYVDHQRHRCISLC
Trigger: GCAGAGGCTGATGCACCTGTGGCGCTGGTGGTCCACATAGCCCCAGAATCTGTACTCATCGACAGCAGATACCAGCAGTGGATGGAGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
ENSMUST00000132308.2
CDS-3UTR CAA 90 bp GTGTGCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGATTCCTGCATAAGTCGTaGGACGCCTTCTCCGCAGTT +
Preference number: 5 (lower is better)
Translates to: VCAGSHQGDRCGFHTGQRFLHKS*DAFSAV
Trigger: AACTGCGGAGAAGGCGTCCAACGACTTATGCAGGAA...TCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGCACAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CAA 90 bp ACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGCCCCATGCTTTCCTGTaGGCACCTGCACTGCTGTCC +
Preference number: 5 (lower is better)
Translates to: TKVTDVASTQGREQPTVQPHAFL*APALLS
Trigger: GGACAGCAGTGCAGGTGCCAACAGGAAAGCATGGGG...CTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CAA 90 bp GTGAAGGCTGCGGGGCAGTCACAACATCCTGTGCTGCCTCATGAGGAAGTGAGCTCCAGGAGCACTGACTaGTCAGGGCTTAGGTTGACG +
Preference number: 5 (lower is better)
Translates to: VKAAGQSQHPVLPHEEVSSRSTD*SGLRLT
Trigger: CGTCAACCTAAGCCCTGACAAGTCAGTGCTCCTGGA...GCTCACTTCCTCATGAGGCAGCACAGGATGTTGTGACTGCCCCGCAGCCTTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR CAA 90 bp GTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGATGGCAGTGGGGGAATCAGCTaGGGCACTGTCGGGAAGTCT +
Preference number: 5 (lower is better)
Translates to: VTDVASTQGREQPTVQDGSGGIS*GTVGKS
Trigger: AGACTTCCCGACAGTGCCCAAGCTGATTCCCCCACT...GCCATCCTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS GCA 90 bp ACCACAAGCAAGGGCTGGAAGGGTTTCCCCAGAGATGCCAACGCATaGTCTCTCTGCAGCAAGATATTCAGCAAGCCCGTGTGGTGGTCG +
Preference number: 5 (lower is better)
Translates to: TTSKGWKGFPRDANA*SLCSKIFSKPVWWS
Trigger: CGACCACCACACGGGCTTGCTGAATATCTTGCTGCAGAGAGAGCATGCGTTGGCATCTCTGGGGAAACCCTTCCAGCCCTTGCTTGTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS GCA 90 bp GGTAGGAGCCACCACAAGCAAGGGCTGGAAGGGTTTCCCCAGAGATaGCAACGCATGCTCTCTCTGCAGCAAGATATTCAGCAAGCCCGT +
Preference number: 5 (lower is better)
Translates to: GRSHHKQGLEGFPQR*QRMLSLQQDIQQAR
Trigger: ACGGGCTTGCTGAATATCTTGCTGCAGAGAGAGCATGCGTTGGCATCTCTGGGGAAACCCTTCCAGCCCTTGCTTGTGGTGGCTCCTACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CCA 90 bp CTGTTTGGGACTGAGCCTGTTGGGAGATGTTCTGGGGCTCTGGGATaGCTGTTGCTTTCCACACCTCCGTTCACTGTGGATAGGGACCTG +
Preference number: 5 (lower is better)
Translates to: LFGTEPVGRCSGALG*LLLSTPPFTVDRDL
Trigger: CAGGTCCCTATCCACAGTGAACGGAGGTGTGGAAAGCAACAGCCATCCCAGAGCCCCAGAACATCTCCCAACAGGCTCAGTCCCAAACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CCA 90 bp CTTGGGGCGGAGCTGATACTTGAGGAGGCATTCACCCCGAACTGTTaGCACGCTGAGGGTGGACCCTTCCTCCTTACTATAGAAGCTGGT +
Preference number: 5 (lower is better)
Translates to: LGAELILEEAFTPNC*HAEGGPFLLTIEAG
Trigger: ACCAGCTTCTATAGTAAGGAGGAAGGGTCCACCCTCAGCGTGCCAACAGTTCGGGGTGAATGCCTCCTCAAGTATCAGCTCCGCCCCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
CDS CCA 90 bp GGAGGGTGGCATCTTTCCCCATCTGGACCAGAGCCTCACAGGGCATaGTATCCCCCGAGTAGACGACTTTCCAGCCAGATGAATGTACCA +
Preference number: 5 (lower is better)
Translates to: GGWHLSPSGPEPHRA*YPPSRRLSSQMNVP
Trigger: TGGTACATTCATCTGGCTGGAAAGTCGTCTACTCGGGGGATACCATGCCCTGTGAGGCTCTGGTCCAGATGGGGAAAGATGCCACCCTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CAA 90 bp TGTGCGCTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAATTCCTGCATAAGTCGTaGGACGCCTTCTCCGCAGTT +
Preference number: 5 (lower is better)
Translates to: CALAPTKVTDVASTQGREFLHKS*DAFSAV
Trigger: AACTGCGGAGAAGGCGTCCAACGACTTATGCAGGAA...TTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAGCGCACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CAA 90 bp ACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGTTGGGACTGAGCCTGTaGGGAGATGTTCTGGGGCTC +
Preference number: 5 (lower is better)
Translates to: TKVTDVASTQGREQPTVQLGLSL*GDVLGL
Trigger: GAGCCCCAGAACATCTCCCAACAGGCTCAGTCCCAA...CTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CAA 90 bp TTATTAACCCTGAGCTTGGCACATGGTCTTGTTTCGGTGAAGGCTGCGGGGCAGCCCCATGCTTTCCTGTaGGCACCTGCACTGCTGTCC +
Preference number: 5 (lower is better)
Translates to: LLTLSLAHGLVSVKAAGQPHAFL*APALLS
Trigger: GGACAGCAGTGCAGGTGCCAACAGGAAAGCATGGGG...CTGCCCCGCAGCCTTCACCGAAACAAGACCATGTGCCAAGCTCAGGGTTAATAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR CAA 90 bp CTGGCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTCATTTCGGATCTTCATaGGGATGGCAGACCCCGTAC +
Preference number: 5 (lower is better)
Translates to: LAPTKVTDVASTQGREQPHFGSS*GWQTPY
Trigger: GTACGGGGTCTGCCATCCCAATGAAGATCCGAAATG...AGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS GCA 90 bp CATGCTTTCCTGTTGGCACCTGCACTGCTGTCCTCTGGAGGGCACTaGCCATTTTCAGCTGATCCAGAGTCCGATGACTGTTTGGGACTG +
Preference number: 5 (lower is better)
Translates to: HAFLLAPALLSSGGH*PFSADPESDDCLGL
Trigger: CAGTCCCAAACAGTCATCGGACTCTGGATCAGCTGAAAATGGGCAGTGCCCTCCAGAGGACAGCAGTGCAGGTGCCAACAGGAAAGCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS GCA 90 bp TTCTGGGGCTATGTGGACCACCAGCGCCACAGGTGCATCAGCCTCTaGCTGGTACCTTTTAAAGGTGTCGTTCTCACAGATGGGCAGGAT +
Preference number: 5 (lower is better)
Translates to: FWGYVDHQRHRCISL*LVPFKGVVLTDGQD
Trigger: ATCCTGCCCATCTGTGAGAACGACACCTTTAAAAGGTACCAGGCAGAGGCTGATGCACCTGTGGCGCTGGTGGTCCACATAGCCCCAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
ENSMUST00000132308.2
CDS CCA 90 bp GATGACTGTTTGGGACTGAGCCTGTTGGGAGATGTTCTGGGGCTCTaGGATGGCTGTTGCTTTCCACACCTCCGTTCACTGTGGATAGGG +
Preference number: 5 (lower is better)
Translates to: DDCLGLSLLGDVLGL*DGCCFPHLRSLWIG
Trigger: CCCTATCCACAGTGAACGGAGGTGTGGAAAGCAACAGCCATCCCAGAGCCCCAGAACATCTCCCAACAGGCTCAGTCCCAAACAGTCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CCA 90 bp GGGGCTATGTGGACCACCAGCGCCACAGGTGCATCAGCCTCTGCCTaGTACCTTTTAAAGGTGTCGTTCTCACAGATGGGCAGGATGAAT +
Preference number: 5 (lower is better)
Translates to: GAMWTTSATGASASA*YLLKVSFSQMGRMN
Trigger: ATTCATCCTGCCCATCTGTGAGAACGACACCTTTAAAAGGTACCAGGCAGAGGCTGATGCACCTGTGGCGCTGGTGGTCCACATAGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
ENSMUST00000132308.2
CDS CCA 90 bp TGCAGCAAGATATTCAGCAAGCCCGTGTGGTGGTCGGCGTGCAGGTaGGACACAAACACAGCCGTGAGGCTGCATAAGACTCGGTCTATT +
Preference number: 5 (lower is better)
Translates to: CSKIFSKPVWWSACR*DTNTAVRLHKTRSI
Trigger: AATAGACCGAGTCTTATGCAGCCTCACGGCTGTGTTTGTGTCCCACCTGCACGCCGACCACCACACGGGCTTGCTGAATATCTTGCTGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CCA 90 bp GCGTTCCACCATCTCTTCAATGTCACCTGCAAACAGGGCCTTCAGTaGGGGAATCAGCTTGGGCACTGTCGGGAAGTCTCCAAAGCAGAC +
Preference number: 5 (lower is better)
Translates to: AFHHLFNVTCKQGLQ*GNQLGHCREVSKAD
Trigger: GTCTGCTTTGGAGACTTCCCGACAGTGCCCAAGCTGATTCCCCCACTGAAGGCCCTGTTTGCAGGTGACATTGAAGAGATGGTGGAACGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CCA 90 bp CTTGGGGCGGAGCTGATACTTGAGGAGGCATTCACCCCGAACTGTTaGCACGCTGAGGGTGGACCCTTCCTTACTATAGAAGCTGGTAAG +
Preference number: 5 (lower is better)
Translates to: LGAELILEEAFTPNC*HAEGGPFLTIEAGK
Trigger: CTTACCAGCTTCTATAGTAAGGAAGGGTCCACCCTCAGCGTGCCAACAGTTCGGGGTGAATGCCTCCTCAAGTATCAGCTCCGCCCCAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108697.8
CDS-3UTR CAA 90 bp ACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGTCCAGGAGCACTGACTaGTCAGGGCTTAGGTTGACG +
Preference number: 5 (lower is better)
Translates to: TKVTDVASTQGREQPTVQSRSTD*SGLRLT
Trigger: CGTCAACCTAAGCCCTGACAAGTCAGTGCTCCTGGA...CTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS TCA 90 bp CTCACAGGGCATGGTATCCCCCGAGTAGACGACTTTCCAGCCAGATaGATGTACCAGTGCACAGCCAAAAGCATGCTTGCAGTGCCGTAC +
Preference number: 5 (lower is better)
Translates to: LTGHGIPRVDDFPAR*MYQCTAKSMLAVPY
Trigger: GTACGGCACTGCAAGCATGCTTTTGGCTGTGCACTGGTACATTCATCTGGCTGGAAAGTCGTCTACTCGGGGGATACCATGCCCTGTGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS GCA 90 bp TTCGTAAGTGATACTCTTCCCGTCCTTGACAGCAGCAATGATGGGTaGAATGGCGGCCGTCCCAACAGGAAGGCCCAGCTCCTTTGCTTT +
Preference number: 5 (lower is better)
Translates to: FVSDTLPVLDSSNDG*NGGRPNRKAQLLCF
Trigger: AAAGCAAAGGAGCTGGGCCTTCCTGTTGGGACGGCCGCCATTGCACCCATCATTGCTGCTGTCAAGGACGGGAAGAGTATCACTTACGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
ENSMUST00000132308.2
CDS CCA 90 bp AGAATCAGGTGCTGTGTGTCAGGCCCGAACCTCTCCATCCACTGCTaGTATCTGCTGTCGATGAGTACAGATTCTGGGGCTATGTGGACC +
Preference number: 5 (lower is better)
Translates to: RIRCCVSGPNLSIHC*YLLSMSTDSGAMWT
Trigger: GGTCCACATAGCCCCAGAATCTGTACTCATCGACAGCAGATACCAGCAGTGGATGGAGAGGTTCGGGCCTGACACACAGCACCTGATTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
ENSMUST00000132308.2
CDS-3UTR CAA 90 bp GCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACACCAGACAGAACACATTaGGGAAGCCCGGTTTCCTTT +
Preference number: 5 (lower is better)
Translates to: APTKVTDVASTQGREQPTPDRTH*GSPVSF
Trigger: AAAGGAAACCGGGCTTCCCAAATGTGTTCTGTCTGG...TGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CAA 90 bp CTTGTTTCGGTGAAGGCTGCGGGGCAGTCACAACATCCTGTGCTGCCTCATGAGATACTCTTCCCGTCCTaGACAGCAGCAATGATGGGT +
Preference number: 5 (lower is better)
Translates to: LVSVKAAGQSQHPVLPHEILFPS*TAAMMG
Trigger: ACCCATCATTGCTGCTGTCAAGGACGGGAAGAGTAT...CTCATGAGGCAGCACAGGATGTTGTGACTGCCCCGCAGCCTTCACCGAAACAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR CAA 90 bp GCTCCCACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAATACTCTTCCCGTCCTaGACAGCAGCAATGATGGGT +
Preference number: 5 (lower is better)
Translates to: APTKVTDVASTQGREQPTILFPS*TAAMMG
Trigger: ACCCATCATTGCTGCTGTCAAGGACGGGAAGAGTAT...TGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGTGGGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CAA 90 bp GACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGATGGCTTCATTTCGGATCTTCATaGGGATGGCAGACCCCGTAC +
Preference number: 5 (lower is better)
Translates to: DRCGFHTGQRTAYSPGWLHFGSS*GWQTPY
Trigger: GTACGGGGTCTGCCATCCCAATGAAGATCCGAAATG...AAGCCATCCTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CAA 90 bp TTTATTAACCCTGAGCTTGGCACATGGTCTTGTTTCGGTGAAGGCTGCGGGGCAAGTGGGGGAATCAGCTaGGGCACTGTCGGGAAGTCT +
Preference number: 5 (lower is better)
Translates to: FINPELGTWSCFGEGCGASGGIS*GTVGKS
Trigger: AGACTTCCCGACAGTGCCCAAGCTGATTCCCCCACT...TGCCCCGCAGCCTTCACCGAAACAAGACCATGTGCCAAGCTCAGGGTTAATAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS GCA 90 bp GATGGGTGCAATGGCGGCCGTCCCAACAGGAAGGCCCAGCTCCTTTaGTTTAAGCACCAAGAAGTTTCCTTTCCTCAAGTGAAGCTTGCA +
Preference number: 5 (lower is better)
Translates to: DGCNGGRPNRKAQLL*FKHQEVSFPQVKLA
Trigger: TGCAAGCTTCACTTGAGGAAAGGAAACTTCTTGGTGCTTAAAGCAAAGGAGCTGGGCCTTCCTGTTGGGACGGCCGCCATTGCACCCATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
ENSMUST00000132308.2
CDS GCA 90 bp GATGAGTACAGATTCTGGGGCTATGTGGACCACCAGCGCCACAGGTaGATCAGCCTCTGCCTGGTACCTTTTAAAGGTGTCGTTCTCACA +
Preference number: 5 (lower is better)
Translates to: DEYRFWGYVDHQRHR*ISLCLVPFKGVVLT
Trigger: TGTGAGAACGACACCTTTAAAAGGTACCAGGCAGAGGCTGATGCACCTGTGGCGCTGGTGGTCCACATAGCCCCAGAATCTGTACTCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
ENSMUST00000132308.2
CDS-3UTR CAA 90 bp ACCAAGGTGACAGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGATACTCTTCCCGTCCTaGACAGCAGCAATGATGGGT +
Preference number: 5 (lower is better)
Translates to: TKVTDVASTQGREQPTVQILFPS*TAAMMG
Trigger: ACCCATCATTGCTGCTGTCAAGGACGGGAAGAGTAT...CTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCTGTCACCTTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS GCA 90 bp CTCGGTCTATTTGCTGTCCGTAATGACGGCACAACTGCCCAAAAGTaGCTTCTCCACAATCCAGGAGCACTGACTTGTCAGGGCTTAGGT +
Preference number: 5 (lower is better)
Translates to: LGLFAVRNDGTTAQK*LLHNPGALTCQGLG
Trigger: ACCTAAGCCCTGACAAGTCAGTGCTCCTGGATTGTGGAGAAGGCACTTTTGGGCAGTTGTGCCGTCATTACGGACAGCAAATAGACCGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CAA 90 bp AGATGTGGCTTCCACACAGGGCAGAGAACAGCCTACAGTCCAGGATGGCTTAGACCAGACAGAACACATTaGGGAAGCCCGGTTTCCTTT +
Preference number: 5 (lower is better)
Translates to: RCGFHTGQRTAYSPGWLRPDRTH*GSPVSF
Trigger: AAAGGAAACCGGGCTTCCCAAATGTGTTCTGTCTGG...TCTAAGCCATCCTGGACTGTAGGCTGTTCTCTGCCCTGTGTGGAAGCCACATCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CAA 90 bp TTTATTAACCCTGAGCTTGGCACATGGTCTTGTTTCGGTGAAGGCTGCGGGGCACATTTCGGATCTTCATaGGGATGGCAGACCCCGTAC +
Preference number: 5 (lower is better)
Translates to: FINPELGTWSCFGEGCGAHFGSS*GWQTPY
Trigger: GTACGGGGTCTGCCATCCCAATGAAGATCCGAAATG...TGCCCCGCAGCCTTCACCGAAACAAGACCATGTGCCAAGCTCAGGGTTAATAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS TCA 90 bp CCCAGCTCCTTTGCTTTAAGCACCAAGAAGTTTCCTTTCCTCAAGTaGAGCTTGCAGACAAAAGCTACCACTAAGGAGGGGTCCCTGCCC +
Preference number: 5 (lower is better)
Translates to: PSSFALSTKKFPFLK*SLQTKATTKEGSLP
Trigger: GGGCAGGGACCCCTCCTTAGTGGTAGCTTTTGTCTGCAAGCTTCACTTGAGGAAAGGAAACTTCTTGGTGCTTAAAGCAAAGGAGCTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
ENSMUST00000132308.2
CDS GCA 90 bp GATAGGGACCTGGTAAACAGTCATGGTCTCATCCTTGTATTCTGGTaGAGAGTGAGGCCGCACGGCCAGTTCTATTCCTTTCAATGGACC +
Preference number: 5 (lower is better)
Translates to: DRDLVNSHGLILVFW*RVRPHGQFYSFQWT
Trigger: GGTCCATTGAAAGGAATAGAACTGGCCGTGCGGCCTCACTCTGCACCAGAATACAAGGATGAGACCATGACTGTTTACCAGGTCCCTATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CCA 90 bp GTGGATAGGGACCTGGTAAACAGTCATGGTCTCATCCTTGTATTCTaGTGCAGAGTGAGGCCGCACGGCCAGTTCTATTCCTTTCAATGG +
Preference number: 5 (lower is better)
Translates to: VDRDLVNSHGLILVF*CRVRPHGQFYSFQW
Trigger: CCATTGAAAGGAATAGAACTGGCCGTGCGGCCTCACTCTGCACCAGAATACAAGGATGAGACCATGACTGTTTACCAGGTCCCTATCCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS-3UTR CAA 90 bp GATTTATTAACCCTGAGCTTGGCACATGGTCTTGTTTCGGTGAAGGCTGCGGGGCCAGACAGAACACATTaGGGAAGCCCGGTTTCCTTT +
Preference number: 5 (lower is better)
Translates to: DLLTLSLAHGLVSVKAAGPDRTH*GSPVSF
Trigger: AAAGGAAACCGGGCTTCCCAAATGTGTTCTGTCTGG...CCCCGCAGCCTTCACCGAAACAAGACCATGTGCCAAGCTCAGGGTTAATAAATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS-3UTR CAA 90 bp GATTTATTAACCCTGAGCTTGGCACATGGTCTTGTTTCGGTGAAGGCTGCGGGGCGAGCGACTTTCAGTTaGTGTTCCTGCATAAGTCGT +
Preference number: 5 (lower is better)
Translates to: DLLTLSLAHGLVSVKAAGRATFS*CSCISR
Trigger: ACGACTTATGCAGGAACACAAACTGAAAGTCGCTCG...CCCCGCAGCCTTCACCGAAACAAGACCATGTGCCAAGCTCAGGGTTAATAAATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS GCA 90 bp CTTTCCAGCCAGATGAATGTACCAGTGCACAGCCAAAAGCATGCTTaGAGTGCCGTACCAGGCAGGTCTGAAATTCTTCTAAGTCACATG +
Preference number: 5 (lower is better)
Translates to: LSSQMNVPVHSQKHA*SAVPGRSEILLSHM
Trigger: CATGTGACTTAGAAGAATTTCAGACCTGCCTGGTACGGCACTGCAAGCATGCTTTTGGCTGTGCACTGGTACATTCATCTGGCTGGAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS TCA 90 bp CTTATCAGCCTTTCCAATGTAGTATTGGAGACCTCTGCCCCTTTCTaGAGGCATTTGGCAGGAATCATACTGACGTGGTGCAGAATCTCC +
Preference number: 5 (lower is better)
Translates to: LISLSNVVLETSAPF*RHLAGIILTWCRIS
Trigger: GGAGATTCTGCACCACGTCAGTATGATTCCTGCCAAATGCCTTCAGAAAGGGGCAGAGGTCTCCAATACTACATTGGAAAGGCTGATAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS TCA 90 bp AGTGCACAGCCAAAAGCATGCTTGCAGTGCCGTACCAGGCAGGTCTaGAATTCTTCTAAGTCACATGTTTCCAACAGCAAGCTTATCAGC +
Preference number: 5 (lower is better)
Translates to: SAQPKACLQCRTRQV*NSSKSHVSNSKLIS
Trigger: GCTGATAAGCTTGCTGTTGGAAACATGTGACTTAGAAGAATTTCAGACCTGCCTGGTACGGCACTGCAAGCATGCTTTTGGCTGTGCACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS GCA 90 bp GTCAGAAAGATGTTGTCCAAGCGAGCGACTTTCAGTTTGTGTTCCTaGATAAGTCGTTGGACGCCTTCTCCGCAGTTAAAAAGGTACCTG +
Preference number: 5 (lower is better)
Translates to: VRKMLSKRATFSLCS*ISRWTPSPQLKRYL
Trigger: CAGGTACCTTTTTAACTGCGGAGAAGGCGTCCAACGACTTATGCAGGAACACAAACTGAAAGTCGCTCGCTTGGACAACATCTTTCTGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CCA 90 bp TTGTCCAAGCGAGCGACTTTCAGTTTGTGTTCCTGCATAAGTCGTTaGACGCCTTCTCCGCAGTTAAAAAGGTACCTGTTGTATTCCGAG +
Preference number: 5 (lower is better)
Translates to: LSKRATFSLCSCISR*TPSPQLKRYLLYSE
Trigger: CTCGGAATACAACAGGTACCTTTTTAACTGCGGAGAAGGCGTCCAACGACTTATGCAGGAACACAAACTGAAAGTCGCTCGCTTGGACAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CCA 90 bp TCCTTCATCAGGACACTCTACCACAATGAATACAAGACCAGGATCTaGGGGTGTACAAAGCTCTTCAGCAGCAATCTCTCTTCCTTCGTA +
Preference number: 5 (lower is better)
Translates to: SFIRTLYHNEYKTRI*GCTKLFSSNLSSFV
Trigger: TACGAAGGAAGAGAGATTGCTGCTGAAGAGCTTTGTACACCCCCAGATCCTGGTCTTGTATTCATTGTGGTAGAGTGTCCTGATGAAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
ENSMUST00000132308.2
CDS CCA 90 bp CTTCTAGATATTTCTCCAGCTGTGGTGGTCCAGACAGAACACATTTaGGAAGCCCGGTTTCCTTTAAAGTTAAAATCATTCCACACAACC +
Preference number: 5 (lower is better)
Translates to: LLDISPAVVVQTEHI*EARFPLKLKSFHTT
Trigger: GGTTGTGTGGAATGATTTTAACTTTAAAGGAAACCGGGCTTCCCAAATGTGTTCTGTCTGGACCACCACAGCTGGAGAAATATCTAGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CAA 90 bp CCCGGGCCGCGCTTCTCCCGCGTACGCAGGTGTCGCAGTGGGTCTTaGGATGGCCGCGGCCGACGAGCCGAACCCTGCGACATGGTGCGC +
Preference number: 6 (lower is better)
Translates to: PGPRFSRVRRCRSGS*DGRGRRAEPCDMVR
Trigger: GCGCACCATGTCGCAGGGTTCGGCTCGTCGGCCGCGGCCATCCAAAGACCCACTGCGACACCTGCGTACGCGGGAGAAGCGCGGCCCGGG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CCA 72 bp CGGGCCGCGCTTCTCCCGCGTACGCAGGTGTCGCAGTaGGTCTTTGGATGGCCGCGGCCGACGAGCCGAACC +
Preference number: 6 (lower is better)
Translates to: RAALLPRTQVSQ*VFGWPRPTSRT
Trigger: GGTTCGGCTCGTCGGCCGCGGCCATCCAAAGACCCACTGCGACACCTGCGTACGCGGGAGAAGCGCGGCCCG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CCA 72 bp CTCCCGCGTACGCAGGTGTCGCAGTGGGTCTTTGGATaGCCGCGGCCGACGAGCCGAACCCTGCGACATGGT +
Preference number: 6 (lower is better)
Translates to: LPRTQVSQWVFG*PRPTSRTLRHG
Trigger: ACCATGTCGCAGGGTTCGGCTCGTCGGCCGCGGCCATCCAAAGACCCACTGCGACACCTGCGTACGCGGGAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS GCA 72 bp TTCTGTTGGGGTTCTCTGTCCTCTGGGCTGTCTGCCTaGTGGGTCAGGAGGGCTGCTCGCACCAGCCGTAGC +
Preference number: 6 (lower is better)
Translates to: FCWGSLSSGLSA*WVRRAARTSRS
Trigger: GCTACGGCTGGTGCGAGCAGCCCTCCTGACCCAGCAGGCAGACAGCCCAGAGGACAGAGAACCCCAACAGAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS TCA 72 bp GGGAAGATGTCAGGGTGGATGAGGCTGAGCTGGGTCTaGATCTTGTGGCTGCGCAGGTTGTGGACCGAGGGG +
Preference number: 6 (lower is better)
Translates to: GKMSGWMRLSWV*ILWLRRLWTEG
Trigger: CCCCTCGGTCCACAACCTGCGCAGCCACAAGATTCAGACCCAGCTCAGCCTCATCCACCCTGACATCTTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
ENSMUST00000132308.2
CDS CCA 72 bp GCCCTGAGCTGGGTAGGAGCCACCACAAGCAAGGGCTaGAAGGGTTTCCCCAGAGATGCCAACGCATGCTCT +
Preference number: 6 (lower is better)
Translates to: ALSWVGATTSKG*KGFPRDANACS
Trigger: AGAGCATGCGTTGGCATCTCTGGGGAAACCCTTCCAGCCCTTGCTTGTGGTGGCTCCTACCCAGCTCAGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS GCA 72 bp GATACTCTTCCCGTCCTTGACAGCAGCAATGATGGGTaGAATGGCGGCCGTCCCAACAGGAAGGCCCAGCTC +
Preference number: 6 (lower is better)
Translates to: DTLPVLDSSNDG*NGGRPNRKAQL
Trigger: GAGCTGGGCCTTCCTGTTGGGACGGCCGCCATTGCACCCATCATTGCTGCTGTCAAGGACGGGAAGAGTATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
ENSMUST00000132308.2
CDS CAA 90 bp GGAGGGCACTGCCCATTTTCAGCTGATCCAGAGTCCGATGACTGTTaGGGACTGAGCCTGTTGGGAGATGTTCTGGGGCTCTGGGATGGC +
Preference number: 6 (lower is better)
Translates to: GGHCPFSADPESDDC*GLSLLGDVLGLWDG
Trigger: GCCATCCCAGAGCCCCAGAACATCTCCCAACAGGCTCAGTCCCAAACAGTCATCGGACTCTGGATCAGCTGAAAATGGGCAGTGCCCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS TCA 72 bp GTGGTATCCCTCTGCCACTCTCTCTTGGGGCGGAGCTaGTACTTGAGGAGGCATTCACCCCGAACTGTTGGC +
Preference number: 6 (lower is better)
Translates to: VVSLCHSLLGRS*YLRRHSPRTVG
Trigger: GCCAACAGTTCGGGGTGAATGCCTCCTCAAGTATCAGCTCCGCCCCAAGAGAGAGTGGCAGAGGGATACCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS TCA 72 bp GGTGGTCGGCGTGCAGGTGGGACACAAACACAGCCGTaGGGCTGCATAAGACTCGGTCTATTTGCTGTCCGT +
Preference number: 6 (lower is better)
Translates to: GGRRAGGTQTQP*GCIRLGLFAVR
Trigger: ACGGACAGCAAATAGACCGAGTCTTATGCAGCCTCACGGCTGTGTTTGTGTCCCACCTGCACGCCGACCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS GCA 72 bp AGCAAGATATTCAGCAAGCCCGTGTGGTGGTCGGCGTaGAGGTGGGACACAAACACAGCCGTGAGGCTGCAT +
Preference number: 6 (lower is better)
Translates to: SKIFSKPVWWSA*RWDTNTAVRLH
Trigger: ATGCAGCCTCACGGCTGTGTTTGTGTCCCACCTGCACGCCGACCACCACACGGGCTTGCTGAATATCTTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS GCA 72 bp GGGCTGCTCGCACCAGCCGTAGCTCCCTCTTCTCCCTaGGTTCCACCATCTCTTCAATGTCACCTGCAAACA +
Preference number: 6 (lower is better)
Translates to: GLLAPAVAPSSP*VPPSLQCHLQT
Trigger: TGTTTGCAGGTGACATTGAAGAGATGGTGGAACGCAGGGAGAAGAGGGAGCTACGGCTGGTGCGAGCAGCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS GCA 72 bp CTCGCGCTCCTAAAGTGTTTGCCACGCTCTCCTTCTTaGTCTGTGGGCTGTGTGGTTCATCTGTGTGGGCCC +
Preference number: 6 (lower is better)
Translates to: LALLKCLPRSPS*SVGCVVHLCGP
Trigger: GGGCCCACACAGATGAACCACACAGCCCACAGAGCAAGAAGGAGAGCGTGGCAAACACTTTAGGAGCGCGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS TCA 72 bp ATACTGACGTGGTGCAGAATCTCCTGGCAGTGGTTGTaGTACTGCTGCAGCCAGGCCCTGAGCTGGGTAGGA +
Preference number: 6 (lower is better)
Translates to: ILTWCRISWQWL*YCCSQALSWVG
Trigger: TCCTACCCAGCTCAGGGCCTGGCTGCAGCAGTATCACAACCACTGCCAGGAGATTCTGCACCACGTCAGTAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS GCA 72 bp CTGTTGGGAGATGTTCTGGGGCTCTGGGATGGCTGTTaGTTTCCACACCTCCGTTCACTGTGGATAGGGACC +
Preference number: 6 (lower is better)
Translates to: LLGDVLGLWDGC*FPHLRSLWIGT
Trigger: GGTCCCTATCCACAGTGAACGGAGGTGTGGAAAGCAACAGCCATCCCAGAGCCCCAGAACATCTCCCAACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS GCA 72 bp CTGTTGGCACCTGCACTGCTGTCCTCTGGAGGGCACTaGCCATTTTCAGCTGATCCAGAGTCCGATGACTGT +
Preference number: 6 (lower is better)
Translates to: LLAPALLSSGGH*PFSADPESDDC
Trigger: ACAGTCATCGGACTCTGGATCAGCTGAAAATGGGCAGTGCCCTCCAGAGGACAGCAGTGCAGGTGCCAACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CCA 72 bp TTGGGACTGAGCCTGTTGGGAGATGTTCTGGGGCTCTaGGATGGCTGTTGCTTTCCACACCTCCGTTCACTG +
Preference number: 6 (lower is better)
Translates to: LGLSLLGDVLGL*DGCCFPHLRSL
Trigger: CAGTGAACGGAGGTGTGGAAAGCAACAGCCATCCCAGAGCCCCAGAACATCTCCCAACAGGCTCAGTCCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CCA 72 bp CCACTGCTGGTATCTGCTGTCGATGAGTACAGATTCTaGGGCTATGTGGACCACCAGCGCCACAGGTGCATC +
Preference number: 6 (lower is better)
Translates to: PLLVSAVDEYRF*GYVDHQRHRCI
Trigger: GATGCACCTGTGGCGCTGGTGGTCCACATAGCCCCAGAATCTGTACTCATCGACAGCAGATACCAGCAGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
ENSMUST00000132308.2
CDS CCA 72 bp ATATTCAGCAAGCCCGTGTGGTGGTCGGCGTGCAGGTaGGACACAAACACAGCCGTGAGGCTGCATAAGACT +
Preference number: 6 (lower is better)
Translates to: IFSKPVWWSACR*DTNTAVRLHKT
Trigger: AGTCTTATGCAGCCTCACGGCTGTGTTTGTGTCCCACCTGCACGCCGACCACCACACGGGCTTGCTGAATAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CCA 72 bp CATCTTTCCCCATCTGGACCAGAGCCTCACAGGGCATaGTATCCCCCGAGTAGACGACTTTCCAGCCAGATG +
Preference number: 6 (lower is better)
Translates to: HLSPSGPEPHRA*YPPSRRLSSQM
Trigger: CATCTGGCTGGAAAGTCGTCTACTCGGGGGATACCATGCCCTGTGAGGCTCTGGTCCAGATGGGGAAAGATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CCA 72 bp CACCTGCAAACAGGGCCTTCAGTGGGGGAATCAGCTTaGGCACTGTCGGGAAGTCTCCAAAGCAGACCTTCA +
Preference number: 6 (lower is better)
Translates to: HLQTGPSVGESA*ALSGSLQSRPS
Trigger: TGAAGGTCTGCTTTGGAGACTTCCCGACAGTGCCCAAGCTGATTCCCCCACTGAAGGCCCTGTTTGCAGGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CAA 72 bp CCTGTTGGGAGATGTTCTGGGGCTCTGGGATGGCTGTaGCTTTCCACACCTCCGTTCACTGTGGATAGGGAC +
Preference number: 6 (lower is better)
Translates to: PVGRCSGALGWL*LSTPPFTVDRD
Trigger: GTCCCTATCCACAGTGAACGGAGGTGTGGAAAGCAACAGCCATCCCAGAGCCCCAGAACATCTCCCAACAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CAA 72 bp TCACCTGCAAACAGGGCCTTCAGTGGGGGAATCAGCTaGGGCACTGTCGGGAAGTCTCCAAAGCAGACCTTC +
Preference number: 6 (lower is better)
Translates to: SPANRAFSGGIS*GTVGKSPKQTF
Trigger: GAAGGTCTGCTTTGGAGACTTCCCGACAGTGCCCAAGCTGATTCCCCCACTGAAGGCCCTGTTTGCAGGTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CAA 72 bp ACTCGCGCTCCTAAAGTGTTTGCCACGCTCTCCTTCTaGCTCTGTGGGCTGTGTGGTTCATCTGTGTGGGCC +
Preference number: 6 (lower is better)
Translates to: TRAPKVFATLSF*LCGLCGSSVWA
Trigger: GGCCCACACAGATGAACCACACAGCCCACAGAGCAAGAAGGAGAGCGTGGCAAACACTTTAGGAGCGCGAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071891.12
CDS GCA 72 bp AGATTCTGGGGCTATGTGGACCACCAGCGCCACAGGTaGATCAGCCTCTGCCTGGTACCTTTTAAAGGTGTC +
Preference number: 6 (lower is better)
Translates to: RFWGYVDHQRHR*ISLCLVPFKGV
Trigger: GACACCTTTAAAAGGTACCAGGCAGAGGCTGATGCACCTGTGGCGCTGGTGGTCCACATAGCCCCAGAATCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
ENSMUST00000132308.2
CDS GCA 72 bp AGGTGCTGTGTGTCAGGCCCGAACCTCTCCATCCACTaGTGGTATCTGCTGTCGATGAGTACAGATTCTGGG +
Preference number: 6 (lower is better)
Translates to: RCCVSGPNLSIH*WYLLSMSTDSG
Trigger: CCCAGAATCTGTACTCATCGACAGCAGATACCAGCAGTGGATGGAGAGGTTCGGGCCTGACACACAGCACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
ENSMUST00000132308.2
CDS GCA 72 bp TTGTGGACCGAGGGGCAATTCTCATTCAGAATCAGGTaGTGTGTGTCAGGCCCGAACCTCTCCATCCACTGC +
Preference number: 6 (lower is better)
Translates to: LWTEGQFSFRIR*CVSGPNLSIHC
Trigger: GCAGTGGATGGAGAGGTTCGGGCCTGACACACAGCACCTGATTCTGAATGAGAATTGCCCCTCGGTCCACAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
ENSMUST00000132308.2
CDS GCA 72 bp AAGGGTTTCCCCAGAGATGCCAACGCATGCTCTCTCTaGAGCAAGATATTCAGCAAGCCCGTGTGGTGGTCG +
Preference number: 6 (lower is better)
Translates to: KGFPRDANACSL*SKIFSKPVWWS
Trigger: CGACCACCACACGGGCTTGCTGAATATCTTGCTGCAGAGAGAGCATGCGTTGGCATCTCTGGGGAAACCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS GCA 72 bp AAGGGCTGGAAGGGTTTCCCCAGAGATGCCAACGCATaGTCTCTCTGCAGCAAGATATTCAGCAAGCCCGTG +
Preference number: 6 (lower is better)
Translates to: KGWKGFPRDANA*SLCSKIFSKPV
Trigger: CACGGGCTTGCTGAATATCTTGCTGCAGAGAGAGCATGCGTTGGCATCTCTGGGGAAACCCTTCCAGCCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CCA 72 bp ACTGAGCCTGTTGGGAGATGTTCTGGGGCTCTGGGATaGCTGTTGCTTTCCACACCTCCGTTCACTGTGGAT +
Preference number: 6 (lower is better)
Translates to: TEPVGRCSGALG*LLLSTPPFTVD
Trigger: ATCCACAGTGAACGGAGGTGTGGAAAGCAACAGCCATCCCAGAGCCCCAGAACATCTCCCAACAGGCTCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CCA 72 bp TGCTGTGTGTCAGGCCCGAACCTCTCCATCCACTGCTaGTATCTGCTGTCGATGAGTACAGATTCTGGGGCT +
Preference number: 6 (lower is better)
Translates to: CCVSGPNLSIHC*YLLSMSTDSGA
Trigger: AGCCCCAGAATCTGTACTCATCGACAGCAGATACCAGCAGTGGATGGAGAGGTTCGGGCCTGACACACAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
ENSMUST00000132308.2
CDS CCA 72 bp CATCTCTTCAATGTCACCTGCAAACAGGGCCTTCAGTaGGGGAATCAGCTTGGGCACTGTCGGGAAGTCTCC +
Preference number: 6 (lower is better)
Translates to: HLFNVTCKQGLQ*GNQLGHCREVS
Trigger: GGAGACTTCCCGACAGTGCCCAAGCTGATTCCCCCACTGAAGGCCCTGTTTGCAGGTGACATTGAAGAGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS GCA 72 bp CACCACAAGCAAGGGCTGGAAGGGTTTCCCCAGAGATaGCAACGCATGCTCTCTCTGCAGCAAGATATTCAG +
Preference number: 6 (lower is better)
Translates to: HHKQGLEGFPQR*QRMLSLQQDIQ
Trigger: CTGAATATCTTGCTGCAGAGAGAGCATGCGTTGGCATCTCTGGGGAAACCCTTCCAGCCCTTGCTTGTGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CCA 72 bp GAGCTGATACTTGAGGAGGCATTCACCCCGAACTGTTaGCACGCTGAGGGTGGACCCTTCCTCCTTACTATA +
Preference number: 6 (lower is better)
Translates to: ELILEEAFTPNC*HAEGGPFLLTI
Trigger: TATAGTAAGGAGGAAGGGTCCACCCTCAGCGTGCCAACAGTTCGGGGTGAATGCCTCCTCAAGTATCAGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000132308.2
CDS CAA 72 bp TGCCCATTTTCAGCTGATCCAGAGTCCGATGACTGTTaGGGACTGAGCCTGTTGGGAGATGTTCTGGGGCTC +
Preference number: 6 (lower is better)
Translates to: CPFSADPESDDC*GLSLLGDVLGL
Trigger: GAGCCCCAGAACATCTCCCAACAGGCTCAGTCCCAAACAGTCATCGGACTCTGGATCAGCTGAAAATGGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS GCA 72 bp AATGGCGGCCGTCCCAACAGGAAGGCCCAGCTCCTTTaGTTTAAGCACCAAGAAGTTTCCTTTCCTCAAGTG +
Preference number: 6 (lower is better)
Translates to: NGGRPNRKAQLL*FKHQEVSFPQV
Trigger: CACTTGAGGAAAGGAAACTTCTTGGTGCTTAAAGCAAAGGAGCTGGGCCTTCCTGTTGGGACGGCCGCCATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
ENSMUST00000132308.2
CDS CCA 72 bp GACCTGGTAAACAGTCATGGTCTCATCCTTGTATTCTaGTGCAGAGTGAGGCCGCACGGCCAGTTCTATTCC +
Preference number: 6 (lower is better)
Translates to: DLVNSHGLILVF*CRVRPHGQFYS
Trigger: GGAATAGAACTGGCCGTGCGGCCTCACTCTGCACCAGAATACAAGGATGAGACCATGACTGTTTACCAGGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CCA 72 bp GAGCTGATACTTGAGGAGGCATTCACCCCGAACTGTTaGCACGCTGAGGGTGGACCCTTCCTTACTATAGAA +
Preference number: 6 (lower is better)
Translates to: ELILEEAFTPNC*HAEGGPFLTIE
Trigger: TTCTATAGTAAGGAAGGGTCCACCCTCAGCGTGCCAACAGTTCGGGGTGAATGCCTCCTCAAGTATCAGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108697.8
CDS CAA 90 bp GTGCCTTCTCCACAATCCAGGAGCACTGACTTGTCAGGGCTTAGGTaGACGAGTGTGGAACTGACATTTCGGATCTTCATTGGGATGGCA +
Preference number: 6 (lower is better)
Translates to: VPSPQSRSTDLSGLR*TSVELTFRIFIGMA
Trigger: TGCCATCCCAATGAAGATCCGAAATGTCAGTTCCACACTCGTCAACCTAAGCCCTGACAAGTCAGTGCTCCTGGATTGTGGAGAAGGCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CAA 90 bp CACAACTGCCCAAAAGTGCCTTCTCCACAATCCAGGAGCACTGACTaGTCAGGGCTTAGGTTGACGAGTGTGGAACTGACATTTCGGATC +
Preference number: 6 (lower is better)
Translates to: HNCPKVPSPQSRSTD*SGLRLTSVELTFRI
Trigger: GATCCGAAATGTCAGTTCCACACTCGTCAACCTAAGCCCTGACAAGTCAGTGCTCCTGGATTGTGGAGAAGGCACTTTTGGGCAGTTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS TCA 72 bp TCTCCTGGAAACTGGGGAGCTCCAAGGCCTCAGCTATaGATTCATCAGTATTGCAGTCGAGTGTGGTATCCC +
Preference number: 6 (lower is better)
Translates to: SPGNWGAPRPQL*IHQYCSRVWYP
Trigger: GGGATACCACACTCGACTGCAATACTGATGAATTCATAGCTGAGGCCTTGGAGCTCCCCAGTTTCCAGGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS TCA 72 bp CTGCCCCTTTCTGAAGGCATTTGGCAGGAATCATACTaGCGTGGTGCAGAATCTCCTGGCAGTGGTTGTGAT +
Preference number: 6 (lower is better)
Translates to: LPLSEGIWQESY*RGAESPGSGCD
Trigger: ATCACAACCACTGCCAGGAGATTCTGCACCACGTCAGTATGATTCCTGCCAAATGCCTTCAGAAAGGGGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS TCA 72 bp CATGGTATCCCCCGAGTAGACGACTTTCCAGCCAGATaGATGTACCAGTGCACAGCCAAAAGCATGCTTGCA +
Preference number: 6 (lower is better)
Translates to: HGIPRVDDFPAR*MYQCTAKSMLA
Trigger: TGCAAGCATGCTTTTGGCTGTGCACTGGTACATTCATCTGGCTGGAAAGTCGTCTACTCGGGGGATACCATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS GCA 72 bp TTTGCTGTCCGTAATGACGGCACAACTGCCCAAAAGTaGCTTCTCCACAATCCAGGAGCACTGACTTGTCAG +
Preference number: 6 (lower is better)
Translates to: FAVRNDGTTAQK*LLHNPGALTCQ
Trigger: CTGACAAGTCAGTGCTCCTGGATTGTGGAGAAGGCACTTTTGGGCAGTTGTGCCGTCATTACGGACAGCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CAA 72 bp ACCTTCATGTGGTCAAAGGCGATGCCAACTTTCTCGTaGAAGTCAGGGCTGAAAAGGGGGATCTTGGCGTAC +
Preference number: 6 (lower is better)
Translates to: TFMWSKAMPTFS*KSGLKRGILAY
Trigger: GTACGCCAAGATCCCCCTTTTCAGCCCTGACTTCAACGAGAAAGTTGGCATCGCCTTTGACCACATGAAGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS TCA 72 bp ACAGTCATGGTCTCATCCTTGTATTCTGGTGCAGAGTaGGGCCGCACGGCCAGTTCTATTCCTTTCAATGGA +
Preference number: 6 (lower is better)
Translates to: TVMVSSLYSGAE*GRTASSIPFNG
Trigger: TCCATTGAAAGGAATAGAACTGGCCGTGCGGCCTCACTCTGCACCAGAATACAAGGATGAGACCATGACTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CCA 72 bp GTTGACGAGTGTGGAACTGACATTTCGGATCTTCATTaGGATGGCAGACCCCGTACCCAGGAAGACAATTTC +
Preference number: 6 (lower is better)
Translates to: VDECGTDISDLH*DGRPRTQEDNF
Trigger: GAAATTGTCTTCCTGGGTACGGGGTCTGCCATCCCAATGAAGATCCGAAATGTCAGTTCCACACTCGTCAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CAA 72 bp GTCAGAAAGATGTTGTCCAAGCGAGCGACTTTCAGTTaGTGTTCCTGCATAAGTCGTTGGACGCCTTCTCCG +
Preference number: 6 (lower is better)
Translates to: VRKMLSKRATFS*CSCISRWTPSP
Trigger: CGGAGAAGGCGTCCAACGACTTATGCAGGAACACAAACTGAAAGTCGCTCGCTTGGACAACATCTTTCTGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS TCA 72 bp CTTTCCAATGTAGTATTGGAGACCTCTGCCCCTTTCTaGAGGCATTTGGCAGGAATCATACTGACGTGGTGC +
Preference number: 6 (lower is better)
Translates to: LSNVVLETSAPF*RHLAGIILTWC
Trigger: GCACCACGTCAGTATGATTCCTGCCAAATGCCTTCAGAAAGGGGCAGAGGTCTCCAATACTACATTGGAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS GCA 72 bp CAGATGAATGTACCAGTGCACAGCCAAAAGCATGCTTaGAGTGCCGTACCAGGCAGGTCTGAAATTCTTCTA +
Preference number: 6 (lower is better)
Translates to: QMNVPVHSQKHA*SAVPGRSEILL
Trigger: TAGAAGAATTTCAGACCTGCCTGGTACGGCACTGCAAGCATGCTTTTGGCTGTGCACTGGTACATTCATCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CCA 72 bp CGAGCGACTTTCAGTTTGTGTTCCTGCATAAGTCGTTaGACGCCTTCTCCGCAGTTAAAAAGGTACCTGTTG +
Preference number: 6 (lower is better)
Translates to: RATFSLCSCISR*TPSPQLKRYLL
Trigger: CAACAGGTACCTTTTTAACTGCGGAGAAGGCGTCCAACGACTTATGCAGGAACACAAACTGAAAGTCGCTCG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CAA 72 bp GCGAGCGACTTTCAGTTTGTGTTCCTGCATAAGTCGTaGGACGCCTTCTCCGCAGTTAAAAAGGTACCTGTT +
Preference number: 6 (lower is better)
Translates to: ASDFQFVFLHKS*DAFSAVKKVPV
Trigger: AACAGGTACCTTTTTAACTGCGGAGAAGGCGTCCAACGACTTATGCAGGAACACAAACTGAAAGTCGCTCGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CAA 72 bp CCACAATCCAGGAGCACTGACTTGTCAGGGCTTAGGTaGACGAGTGTGGAACTGACATTTCGGATCTTCATT +
Preference number: 6 (lower is better)
Translates to: PQSRSTDLSGLR*TSVELTFRIFI
Trigger: AATGAAGATCCGAAATGTCAGTTCCACACTCGTCAACCTAAGCCCTGACAAGTCAGTGCTCCTGGATTGTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CAA 90 bp GTTGTCCAAGCGAGCGACTTTCAGTTTGTGTTCCTGCATAAGTCGTaGGACGCCTTCTCCGCAGTTAAAAAGGTACCTGTTGTATTCCGA +
Preference number: 6 (lower is better)
Translates to: VVQASDFQFVFLHKS*DAFSAVKKVPVVFR
Trigger: TCGGAATACAACAGGTACCTTTTTAACTGCGGAGAAGGCGTCCAACGACTTATGCAGGAACACAAACTGAAAGTCGCTCGCTTGGACAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CAA 90 bp TGCATCCGAGTCAGAAAGATGTTGTCCAAGCGAGCGACTTTCAGTTaGTGTTCCTGCATAAGTCGTTGGACGCCTTCTCCGCAGTTAAAA +
Preference number: 6 (lower is better)
Translates to: CIRVRKMLSKRATFS*CSCISRWTPSPQLK
Trigger: TTTTAACTGCGGAGAAGGCGTCCAACGACTTATGCAGGAACACAAACTGAAAGTCGCTCGCTTGGACAACATCTTTCTGACTCGGATGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS TCA 72 bp CCAAAAGCATGCTTGCAGTGCCGTACCAGGCAGGTCTaGAATTCTTCTAAGTCACATGTTTCCAACAGCAAG +
Preference number: 6 (lower is better)
Translates to: PKACLQCRTRQV*NSSKSHVSNSK
Trigger: CTTGCTGTTGGAAACATGTGACTTAGAAGAATTTCAGACCTGCCTGGTACGGCACTGCAAGCATGCTTTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS GCA 72 bp ATGTTGTCCAAGCGAGCGACTTTCAGTTTGTGTTCCTaGATAAGTCGTTGGACGCCTTCTCCGCAGTTAAAA +
Preference number: 6 (lower is better)
Translates to: MLSKRATFSLCS*ISRWTPSPQLK
Trigger: TTTTAACTGCGGAGAAGGCGTCCAACGACTTATGCAGGAACACAAACTGAAAGTCGCTCGCTTGGACAACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CCA 72 bp AGGACACTCTACCACAATGAATACAAGACCAGGATCTaGGGGTGTACAAAGCTCTTCAGCAGCAATCTCTCT +
Preference number: 6 (lower is better)
Translates to: RTLYHNEYKTRI*GCTKLFSSNLS
Trigger: AGAGAGATTGCTGCTGAAGAGCTTTGTACACCCCCAGATCCTGGTCTTGTATTCATTGTGGTAGAGTGTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
ENSMUST00000132308.2
CDS CAA 90 bp GGCCGCACGGCCAGTTCTATTCCTTTCAATGGACCAGAAAATATTTaGATTGCTTCTAGATATTTCTCCAGCTGTGGTGGTCCAGACAGA +
Preference number: 6 (lower is better)
Translates to: GRTASSIPFNGPENI*IASRYFSSCGGPDR
Trigger: TCTGTCTGGACCACCACAGCTGGAGAAATATCTAGAAGCAATCAAAATATTTTCTGGTCCATTGAAAGGAATAGAACTGGCCGTGCGGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CAA 90 bp GCTTCTAGATATTTCTCCAGCTGTGGTGGTCCAGACAGAACACATTaGGGAAGCCCGGTTTCCTTTAAAGTTAAAATCATTCCACACAAC +
Preference number: 6 (lower is better)
Translates to: ASRYFSSCGGPDRTH*GSPVSFKVKIIPHN
Trigger: GTTGTGTGGAATGATTTTAACTTTAAAGGAAACCGGGCTTCCCAAATGTGTTCTGTCTGGACCACCACAGCTGGAGAAATATCTAGAAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CCA 72 bp ATTTCTCCAGCTGTGGTGGTCCAGACAGAACACATTTaGGAAGCCCGGTTTCCTTTAAAGTTAAAATCATTC +
Preference number: 6 (lower is better)
Translates to: ISPAVVVQTEHI*EARFPLKLKSF
Trigger: GAATGATTTTAACTTTAAAGGAAACCGGGCTTCCCAAATGTGTTCTGTCTGGACCACCACAGCTGGAGAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8
CDS CAA 72 bp TATTTCTCCAGCTGTGGTGGTCCAGACAGAACACATTaGGGAAGCCCGGTTTCCTTTAAAGTTAAAATCATT +
Preference number: 6 (lower is better)
Translates to: YFSSCGGPDRTH*GSPVSFKVKII
Trigger: AATGATTTTAACTTTAAAGGAAACCGGGCTTCCCAAATGTGTTCTGTCTGGACCACCACAGCTGGAGAAATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071891.12
ENSMUST00000101049.9
ENSMUST00000108697.8