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Pregenerated sensors for EIF5B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026083

Ensembl transcript IDs: ENSMUST00000027252.8

Found 215 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GAAGGGTGGGTGAGTGCAGGCACGCTGGACTGTGGGGCGGGGAACTaGCCACTGTCAAACCAGTGTAAGTTGCTTGGTTTCTCATGGAAA +
Preference number: 1 (lower is better)
Translates to: EGWVSAGTLDCGAGN*PLSNQCKLLGFSWK
Trigger: TTTCCATGAGAAACCAAGCAACTTACACTGGTTTGACAGTGGTCAGTTCCCCGCCCCACAGTCCAGCGTGCCTGCACTCACCCACCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR CCA 90 bp GCTAAGTCTGAAGGACAACCATGCGTGCTGGAGCTTTCTCTTCAGTaGTGCCTCTTCCTCACCTTCAGGTTGATGCAGCAGTCGGTGGAG +
Preference number: 1 (lower is better)
Translates to: AKSEGQPCVLELSLQ*CLFLTFRLMQQSVE
Trigger: CTCCACCGACTGCTGCATCAACCTGAAGGTGAGGAAGAGGCACCACTGAAGAGAAAGCTCCAGCACGCATGGTTGTCCTTCAGACTTAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR GCA 90 bp AAGTCTGAAGGACAACCATGCGTGCTGGAGCTTTCTCTTCAGTGGTaGCTCTTCCTCACCTTCAGGTTGATGCAGCAGTCGGTGGAGTCT +
Preference number: 1 (lower is better)
Translates to: KSEGQPCVLELSLQW*LFLTFRLMQQSVES
Trigger: AGACTCCACCGACTGCTGCATCAACCTGAAGGTGAGGAAGAGGCACCACTGAAGAGAAAGCTCCAGCACGCATGGTTGTCCTTCAGACTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR TCA 90 bp TGCTGGAGCTTTCTCTTCAGTGGTGCCTCTTCCTCACCTTCAGGTTaGTGCAGCAGTCGGTGGAGTCTGTATGGAACATGGCGTTTGACT +
Preference number: 1 (lower is better)
Translates to: CWSFLFSGASSSPSG*CSSRWSLYGTWRLT
Trigger: AGTCAAACGCCATGTTCCATACAGACTCCACCGACTGCTGCATCAACCTGAAGGTGAGGAAGAGGCACCACTGAAGAGAAAGCTCCAGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR TCA 90 bp GGAACAAGAGGAAGAACCTCATTGGTTCTCCCAGAAAGAGTCCTTTaGAAAATAAGCTGCTTAGCAGTCCTGCAAAAACTCTGCCAGGGG +
Preference number: 1 (lower is better)
Translates to: GTRGRTSLVLPERVL*KISCLAVLQKLCQG
Trigger: CCCCTGGCAGAGTTTTTGCAGGACTGCTAAGCAGCTTATTTTTCAAAGGACTCTTTCTGGGAGAACCAATGAGGTTCTTCCTCTTGTTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR TCA 90 bp AGCAAGATTAGTGTAATTGCCCTTCCAGCATTCTCACAAGTACGTTaGTGTCAGGGACCTTCAGTCATGCTTTTCTCACCTGTCCTCTCC +
Preference number: 1 (lower is better)
Translates to: SKISVIALPAFSQVR*CQGPSVMLFSPVLS
Trigger: GGAGAGGACAGGTGAGAAAAGCATGACTGAAGGTCCCTGACATCAACGTACTTGTGAGAATGCTGGAAGGGCAATTACACTAATCTTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR CCA 90 bp CTCTTCCTCACCTTCAGGTTGATGCAGCAGTCGGTGGAGTCTGTATaGAACATGGCGTTTGACTTTATTCTTGACAATGTTCAGGTGGTT +
Preference number: 1 (lower is better)
Translates to: LFLTFRLMQQSVESV*NMAFDFILDNVQVV
Trigger: AACCACCTGAACATTGTCAAGAATAAAGTCAAACGCCATGTTCCATACAGACTCCACCGACTGCTGCATCAACCTGAAGGTGAGGAAGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR CCA 90 bp GCTGGAGCTGTGGAATTCAGTGATGTGAAGACCTTGCTCAAAGAGTaGATCACTACTATCTCAGGTTTGTGTGGTAGCTCTGTGATTCGA +
Preference number: 1 (lower is better)
Translates to: AGAVEFSDVKTLLKE*ITTISGLCGSSVIR
Trigger: TCGAATCACAGAGCTACCACACAAACCTGAGATAGTAGTGATCCACTCTTTGAGCAAGGTCTTCACATCACTGAATTCCACAGCTCCAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR GCA 90 bp TCCCTAGATCCGATGGAAGAAGACATCCTGCAGGTTGTGAGATACTaGACTGACCTCATAGAGGAGAAAGACTTGGAAAAATTGGATCTG +
Preference number: 1 (lower is better)
Translates to: SLDPMEEDILQVVRY*TDLIEEKDLEKLDL
Trigger: CAGATCCAATTTTTCCAAGTCTTTCTCCTCTATGAGGTCAGTGCAGTATCTCACAACCTGCAGGATGTCTTCTTCCATCGGATCTAGGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR CCA 90 bp TTAAACCAAGTTTATTTTCTTAACACTTGGTTTTACTGTCTGGGCTaGCCTTTAAACTCAGTGGCTGAGATTAAAGGCGTGAGCCACTGT +
Preference number: 1 (lower is better)
Translates to: LNQVYFLNTWFYCLG*PLNSVAEIKGVSHC
Trigger: ACAGTGGCTCACGCCTTTAATCTCAGCCACTGAGTTTAAAGGCCAGCCCAGACAGTAAAACCAAGTGTTAAGAAAATAAACTTGGTTTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR TCA 90 bp GTTGGAAGGACAAAGAGTCAATGGTATTATTACCTGATTGCATTTTaGGACTCTCATACCTCCTCTTTTAGTGCCAAAGAATCCTTTACT +
Preference number: 1 (lower is better)
Translates to: VGRTKSQWYYYLIAF*DSHTSSFSAKESFT
Trigger: AGTAAAGGATTCTTTGGCACTAAAAGAGGAGGTATGAGAGTCTCAAAATGCAATCAGGTAATAATACCATTGACTCTTTGTCCTTCCAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR GCA 90 bp ACCAGAGGGAAGAGATGTGGGAGGCAGGTGTTGGTCCCTAAAGATTCTGGAAGAGGGCCTGGGGCTCTCTaGGCTGTGCCAGCAGTGCTT +
Preference number: 2 (lower is better)
Translates to: TRGKRCGRQVLVPKDSGRGPGAL*AVPAVL
Trigger: AAGCACTGCTGGCACAGCGCAGAGAGCCCCAGGCCC...TCTTCCAGAATCTTTAGGGACCAACACCTGCCTCCCACATCTCTTCCCTCTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR GCA 90 bp ACCAGAGGGAAGAGATGTGGGAGGCAGGTGTTGGTCCCTAAAGATTCTGGAAGAGGAAGGGTGGGTGAGTaGAGGCACGCTGGACTGTGG +
Preference number: 2 (lower is better)
Translates to: TRGKRCGRQVLVPKDSGRGRVGE*RHAGLW
Trigger: CCACAGTCCAGCGTGCCTGCACTCACCCACCCTTCC...TCTTCCAGAATCTTTAGGGACCAACACCTGCCTCCCACATCTCTTCCCTCTGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR TCA 90 bp TGCGTGCTGGAGCTTTCTCTTCAGTGGTGCCTCTTCCTCACCTTCAGGTTGATGTGTGGGGCGGGGAACTaGCCACTGTCAAACCAGTGT +
Preference number: 2 (lower is better)
Translates to: CVLELSLQWCLFLTFRLMCGAGN*PLSNQC
Trigger: ACACTGGTTTGACAGTGGTCAGTTCCCCGCCCCACA...CATCAACCTGAAGGTGAGGAAGAGGCACCACTGAAGAGAAAGCTCCAGCACGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR CCA 90 bp CCTGAGGAGCTTGCACTTCTGCAGACAGTGGTTGGCACCTCAGCACCAGAGGGAAATTGTAGCCAGCCATaGCTGCACACAGAGCAGAAG +
Preference number: 2 (lower is better)
Translates to: PEELALLQTVVGTSAPEGNCSQP*LHTEQK
Trigger: CTTCTGCTCTGTGTGCAGCCATGGCTGGCTACAATT...TCCCTCTGGTGCTGAGGTGCCAACCACTGTCTGCAGAAGTGCAAGCTCCTCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR TCA 90 bp ACCTGTCCTCTCCTCTATCTAATTCCTGAGGAGCTTGCACTTCTGCAGACAGTGTCCTCACCTTCAGGTTaGTGCAGCAGTCGGTGGAGT +
Preference number: 2 (lower is better)
Translates to: TCPLLYLIPEELALLQTVSSPSG*CSSRWS
Trigger: ACTCCACCGACTGCTGCATCAACCTGAAGGTGAGGA...CACTGTCTGCAGAAGTGCAAGCTCCTCAGGAATTAGATAGAGGAGAGGACAGGT
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR CCA 90 bp ACCATGCGTGCTGGAGCTTTCTCTTCAGTGGTGCCTCTTCCTCACCTTCAGGTTATTCTACTTAAAGGCTaGACCTCCAAGCCAGCCTGC +
Preference number: 2 (lower is better)
Translates to: TMRAGAFSSVVPLPHLQVILLKG*TSKPAC
Trigger: GCAGGCTGGCTTGGAGGTCCAGCCTTTAAGTAGAAT...AACCTGAAGGTGAGGAAGAGGCACCACTGAAGAGAAAGCTCCAGCACGCATGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR TCA 90 bp CCTGAGGAGCTTGCACTTCTGCAGACAGTGGTTGGCACCTCAGCACCAGAGGGAAGCTTCAAAAGGAGCTaGAAGCAGCATATGATCAAA +
Preference number: 2 (lower is better)
Translates to: PEELALLQTVVGTSAPEGSFKRS*KQHMIK
Trigger: TTTGATCATATGCTGCTTTCAGCTCCTTTTGAAGCT...TCCCTCTGGTGCTGAGGTGCCAACCACTGTCTGCAGAAGTGCAAGCTCCTCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR GCA 90 bp GGTGTTGCCACATCCTGTTGGAACAGTTTTATTACAGATCCCAGAGCCTCAAGAACAAGCTGTAAGGCGTaGTGGGTCCTCACCTGGGGT +
Preference number: 2 (lower is better)
Translates to: GVATSCWNSFITDPRASRTSCKA*WVLTWG
Trigger: ACCCCAGGTGAGGACCCAGCACGCCTTACAGCTTGT...TCTTGAGGCTCTGGGATCTGTAATAAAACTGTTCCAACAGGATGTGGCAACACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR GCA 90 bp ACCTGTCCTCTCCTCTATCTAATTCCTGAGGAGCTTGCACTTCTGCAGACAGTGGTCCTGCAAAAACTCTaGCAGGGGCATATGGAAGCC +
Preference number: 2 (lower is better)
Translates to: TCPLLYLIPEELALLQTVVLQKL*QGHMEA
Trigger: GGCTTCCATATGCCCCTGGCAGAGTTTTTGCAGGAC...CACTGTCTGCAGAAGTGCAAGCTCCTCAGGAATTAGATAGAGGAGAGGACAGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR TCA 90 bp AGCAGCTGTTTTAGACCAGCAGCACCCAACCTAGCTGGAGCTGTGGAATTCAGTTGCCAGCAGTGCTTGTaGGGTATTTGCAAAGTGCAT +
Preference number: 2 (lower is better)
Translates to: SSCFRPAAPNLAGAVEFSCQQCL*GICKVH
Trigger: ATGCACTTTGCAAATACCTCACAAGCACTGCTGGCA...ACTGAATTCCACAGCTCCAGCTAGGTTGGGTGCTGCTGGTCTAAAACAGCTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR TCA 90 bp ACCTGTCCTCTCCTCTATCTAATTCCTGAGGAGCTTGCACTTCTGCAGACAGTGACATCCTGCAGGTTGTaGGATACTGCACTGACCTCA +
Preference number: 2 (lower is better)
Translates to: TCPLLYLIPEELALLQTVTSCRL*DTALTS
Trigger: TGAGGTCAGTGCAGTATCTCACAACCTGCAGGATGT...CACTGTCTGCAGAAGTGCAAGCTCCTCAGGAATTAGATAGAGGAGAGGACAGGT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR GCA 90 bp CCTGAGGAGCTTGCACTTCTGCAGACAGTGGTTGGCACCTCAGCACCAGAGGGACAAACCAGTGTAAGTTaGTTGGTTTCTCATGGAAAA +
Preference number: 2 (lower is better)
Translates to: PEELALLQTVVGTSAPEGQTSVS*LVSHGK
Trigger: TTTTCCATGAGAAACCAAGCAACTTACACTGGTTTG...TCCCTCTGGTGCTGAGGTGCCAACCACTGTCTGCAGAAGTGCAAGCTCCTCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR CCA 90 bp ACTCATCAGCAGCCAACCAGTACATCTGGTAAGAGGAGAGAACTGTCATGTCCCTCTGCCAGGGGCATATaGAAGCCCCCAGAAGTTAAT +
Preference number: 2 (lower is better)
Translates to: THQQPTSTSGKRRELSCPSARGI*KPPEVN
Trigger: ATTAACTTCTGGGGGCTTCCATATGCCCCTGGCAGA...GGGACATGACAGTTCTCTCCTCTTACCAGATGTACTGGTTGGCTGCTGATGAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR CAA 90 bp GCACCCAACCTAGCTGGAGCTGTGGAATTCAGTGATGTGAAGACCTaGCTCAAAGAGTGGATCACTACTATCTCAGGTTTGTGTGGTAGC +
Preference number: 2 (lower is better)
Translates to: APNLAGAVEFSDVKT*LKEWITTISGLCGS
Trigger: GCTACCACACAAACCTGAGATAGTAGTGATCCACTCTTTGAGCAAGGTCTTCACATCACTGAATTCCACAGCTCCAGCTAGGTTGGGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR TCA 90 bp ACCATGCGTGCTGGAGCTTTCTCTTCAGTGGTGCCTCTTCCTCACCTTCAGGTTGATGTCCAAAAGCTGTaGAATTGCTCAACAGTCCAA +
Preference number: 2 (lower is better)
Translates to: TMRAGAFSSVVPLPHLQVDVQKL*NCSTVQ
Trigger: TTGGACTGTTGAGCAATTTCACAGCTTTTGGACATC...AACCTGAAGGTGAGGAAGAGGCACCACTGAAGAGAAAGCTCCAGCACGCATGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR GCA 90 bp CATTCTCGTTCACTTCCTCAACAGGAAGAAGTCTCGGCTTCTACCCCTGGTGCAGGTTTCTTCAAAGGATaGTATTGGGTCCTCAGGAGT +
Preference number: 2 (lower is better)
Translates to: HSRSLPQQEEVSASTPGAGFFKG*YWVLRS
Trigger: ACTCCTGAGGACCCAATAGCATCCTTTGAAGAAACC...TGCACCAGGGGTAGAAGCCGAGACTTCTTCCTGTTGAGGAAGTGAACGAGAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR CCA 90 bp ACCTGTCCTCTCCTCTATCTAATTCCTGAGGAGCTTGCACTTCTGCAGACAGTGGAGGAAGAACCTCATTaGTTCTCCCAGAAAGAGTCC +
Preference number: 2 (lower is better)
Translates to: TCPLLYLIPEELALLQTVEEEPH*FSQKES
Trigger: GGACTCTTTCTGGGAGAACCAATGAGGTTCTTCCTC...CACTGTCTGCAGAAGTGCAAGCTCCTCAGGAATTAGATAGAGGAGAGGACAGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR TCA 90 bp CTAGATCCGATGGAAGAAGACATCCTGCAGGTTGTGAGATACTGCACTGACCTCGTGTGGATGAATCACTaGGGTCTAATCATGCAGAAG +
Preference number: 2 (lower is better)
Translates to: LDPMEEDILQVVRYCTDLVWMNH*GLIMQK
Trigger: CTTCTGCATGATTAGACCTCAGTGATTCATCCACAC...GAGGTCAGTGCAGTATCTCACAACCTGCAGGATGTCTTCTTCCATCGGATCTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR TCA 90 bp ACCTGTCCTCTCCTCTATCTAATTCCTGAGGAGCTTGCACTTCTGCAGACAGTGTGTGAGATACTGCACTaGCCTCATAGAGGAGAAAGA +
Preference number: 2 (lower is better)
Translates to: TCPLLYLIPEELALLQTVCEILH*PHRGER
Trigger: TCTTTCTCCTCTATGAGGTCAGTGCAGTATCTCACA...CACTGTCTGCAGAAGTGCAAGCTCCTCAGGAATTAGATAGAGGAGAGGACAGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR TCA 90 bp ACCAGAGGGAAGAGATGTGGGAGGCAGGTGTTGGTCCCTAAAGATTCTGGAAGATGGAATTCAGTGATGTaGAGACCTTGCTCAAAGAGT +
Preference number: 2 (lower is better)
Translates to: TRGKRCGRQVLVPKDSGRWNSVM*RPCSKS
Trigger: ACTCTTTGAGCAAGGTCTTCACATCACTGAATTCCA...TCTTCCAGAATCTTTAGGGACCAACACCTGCCTCCCACATCTCTTCCCTCTGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR TCA 90 bp ACCAGAGGGAAGAGATGTGGGAGGCAGGTGTTGGTCCCTAAAGATTCTGGAAGATACCTGATTGCATTTTaGGACTCTCATACCTCCTCT +
Preference number: 2 (lower is better)
Translates to: TRGKRCGRQVLVPKDSGRYLIAF*DSHTSS
Trigger: AGAGGAGGTATGAGAGTCTCAAAATGCAATCAGGTA...TCTTCCAGAATCTTTAGGGACCAACACCTGCCTCCCACATCTCTTCCCTCTGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR CAA 90 bp GATGTGAAGACCTTGCTCAAAGAGTGGATCACTACTATCTCAGGTTaGTGTGGTAGCTCTGTGATTCGAGAACAGGACCTGAGCACAATG +
Preference number: 2 (lower is better)
Translates to: DVKTLLKEWITTISG*CGSSVIREQDLSTM
Trigger: CATTGTGCTCAGGTCCTGTTCTCGAATCACAGAGCTACCACACAAACCTGAGATAGTAGTGATCCACTCTTTGAGCAAGGTCTTCACATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR TCA 90 bp ACCTGTCCTCTCCTCTATCTAATTCCTGAGGAGCTTGCACTTCTGCAGACAGTGGAAGACACTCTTTGTTaGCTTTACTGGTTCACACAG +
Preference number: 2 (lower is better)
Translates to: TCPLLYLIPEELALLQTVEDTLC*LYWFTQ
Trigger: CTGTGTGAACCAGTAAAGTCAACAAAGAGTGTCTTC...CACTGTCTGCAGAAGTGCAAGCTCCTCAGGAATTAGATAGAGGAGAGGACAGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR CCA 90 bp TATGTCCAATACACAAGTGACCATGAAATGTTTCTGAGTGCCCTAATAGGCCTTGTCTTAAAGGAAGGGTaGGTGAGTGCAGGCACGCTG +
Preference number: 2 (lower is better)
Translates to: YVQYTSDHEMFLSALIGLVLKEG*VSAGTL
Trigger: CAGCGTGCCTGCACTCACCCACCCTTCCTTTAAGAC...AAGGCCTATTAGGGCACTCAGAAACATTTCATGGTCACTTGTGTATTGGACATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR CAA 90 bp AGGAACAAGAGGAAGAACCTCATTGGTTCTCCCAGAAAGAGTCCTTaGAAAAATAAGCTGCTTAGCAGTCCTGCAAAAACTCTGCCAGGG +
Preference number: 2 (lower is better)
Translates to: RNKRKNLIGSPRKSP*KNKLLSSPAKTLPG
Trigger: CCCTGGCAGAGTTTTTGCAGGACTGCTAAGCAGCTTATTTTTCAAAGGACTCTTTCTGGGAGAACCAATGAGGTTCTTCCTCTTGTTCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR CCA 90 bp GGTGTTGCCACATCCTGTTGGAACAGTTTTATTACAGATCCCAGAGCCTCAAGATTTTACTGTCTGGGCTaGCCTTTAAACTCAGTGGCT +
Preference number: 2 (lower is better)
Translates to: GVATSCWNSFITDPRASRFYCLG*PLNSVA
Trigger: AGCCACTGAGTTTAAAGGCCAGCCCAGACAGTAAAA...TCTTGAGGCTCTGGGATCTGTAATAAAACTGTTCCAACAGGATGTGGCAACACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR CCA 90 bp CATTCTCGTTCACTTCCTCAACAGGAAGAAGTCTCGGCTTCTACCCCTGGTGCATATTTTCTTAACACTTaGTTTTACTGTCTGGGCTGG +
Preference number: 2 (lower is better)
Translates to: HSRSLPQQEEVSASTPGAYFLNT*FYCLGW
Trigger: CCAGCCCAGACAGTAAAACCAAGTGTTAAGAAAATA...TGCACCAGGGGTAGAAGCCGAGACTTCTTCCTGTTGAGGAAGTGAACGAGAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR GCA 90 bp TATGTCCAATACACAAGTGACCATGAAATGTTTCTGAGTGCCCTAATAGGCCTTCTTTCTCTTCAGTGGTaGCTCTTCCTCACCTTCAGG +
Preference number: 2 (lower is better)
Translates to: YVQYTSDHEMFLSALIGLLSLQW*LFLTFR
Trigger: CCTGAAGGTGAGGAAGAGGCACCACTGAAGAGAAAG...AAGGCCTATTAGGGCACTCAGAAACATTTCATGGTCACTTGTGTATTGGACATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR CCA 90 bp GCTCTCCTGACTAGTACAAGCAGTAATTGTAGCCAGCCATGGCTGCACACAGAGAAATCTGTAGAAGCTTaGTTAATCAAATACTGCAGG +
Preference number: 2 (lower is better)
Translates to: ALLTSTSSNCSQPWLHTEKSVEA*LIKYCR
Trigger: CCTGCAGTATTTGATTAACCAAGCTTCTACAGATTT...CTCTGTGTGCAGCCATGGCTGGCTACAATTACTGCTTGTACTAGTCAGGAGAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR CCA 90 bp ACCTGTCCTCTCCTCTATCTAATTCCTGAGGAGCTTGCACTTCTGCAGACAGTGTTGACAATGTTCAGGTaGTTTTACAGCAGACTTATG +
Preference number: 2 (lower is better)
Translates to: TCPLLYLIPEELALLQTVLTMFR*FYSRLM
Trigger: CATAAGTCTGCTGTAAAACCACCTGAACATTGTCAA...CACTGTCTGCAGAAGTGCAAGCTCCTCAGGAATTAGATAGAGGAGAGGACAGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR TCA 90 bp GGTGTTGCCACATCCTGTTGGAACAGTTTTATTACAGATCCCAGAGCCTCAAGACCTGTTAAAGTGATTTaGAAACAGTCTAGCTGTCCT +
Preference number: 2 (lower is better)
Translates to: GVATSCWNSFITDPRASRPVKVI*KQSSCP
Trigger: AGGACAGCTAGACTGTTTTCAAATCACTTTAACAGG...TCTTGAGGCTCTGGGATCTGTAATAAAACTGTTCCAACAGGATGTGGCAACACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR CAA 90 bp GCTGTAAGTCACTGCTGGTTGGTACTTGTGCTGGTCTTAGTATTTTaGGATACAAGTCAAGCTACTTGTCCTTTGAGACTGCTGTTTGAA +
Preference number: 2 (lower is better)
Translates to: AVSHCWLVLVLVLVF*DTSQATCPLRLLFE
Trigger: TTCAAACAGCAGTCTCAAAGGACAAGTAGCTTGACTTGTATCCAAAAATACTAAGACCAGCACAAGTACCAACCAGCAGTGACTTACAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR CCA 90 bp GGTGTTGCCACATCCTGTTGGAACAGTTTTATTACAGATCCCAGAGCCTCAAGAAGTCTGTATGGAACATaGCGTTTGACTTTATTCTTG +
Preference number: 2 (lower is better)
Translates to: GVATSCWNSFITDPRASRSLYGT*RLTLFL
Trigger: CAAGAATAAAGTCAAACGCCATGTTCCATACAGACT...TCTTGAGGCTCTGGGATCTGTAATAAAACTGTTCCAACAGGATGTGGCAACACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR CCA 90 bp CTAGCTGGAGCTGTGGAATTCAGTGATGTGAAGACCTTGCTCAAAGAGTGGATCTCAATTGAGGGCATATaGATAGAACAGGTTTTTAAG +
Preference number: 2 (lower is better)
Translates to: LAGAVEFSDVKTLLKEWISIEGI*IEQVFK
Trigger: CTTAAAAACCTGTTCTATCCATATGCCCTCAATTGA...GATCCACTCTTTGAGCAAGGTCTTCACATCACTGAATTCCACAGCTCCAGCTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR CAA 90 bp GTGCTGGTCTTAGTATTTTTGGATACAAGTCAAGCTACTTGTCCTTaGAGACTGCTGTTTGAAAGAATGTGGGTTCAAAACATGAAATCT +
Preference number: 2 (lower is better)
Translates to: VLVLVFLDTSQATCP*RLLFERMWVQNMKS
Trigger: AGATTTCATGTTTTGAACCCACATTCTTTCAAACAGCAGTCTCAAAGGACAAGTAGCTTGACTTGTATCCAAAAATACTAAGACCAGCAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR TCA 72 bp GTGAGTGCAGGCACGCTGGACTGTGGGGCGGGGAACTaGCCACTGTCAAACCAGTGTAAGTTGCTTGGTTTC +
Preference number: 3 (lower is better)
Translates to: VSAGTLDCGAGN*PLSNQCKLLGF
Trigger: GAAACCAAGCAACTTACACTGGTTTGACAGTGGTCAGTTCCCCGCCCCACAGTCCAGCGTGCCTGCACTCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR GCA 72 bp CTTCTACCCCTGGTGCACAGGACCTATCTAGTTTACTaGCAGGCCAGAGCAGCTGTTTTAGACCAGCAGCAC +
Preference number: 3 (lower is better)
Translates to: LLPLVHRTYLVY*QARAAVLDQQH
Trigger: GTGCTGCTGGTCTAAAACAGCTGCTCTGGCCTGGCAGTAAACTAGATAGGTCCTGTGCACCAGGGGTAGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR CCA 72 bp GAAGGACAACCATGCGTGCTGGAGCTTTCTCTTCAGTaGTGCCTCTTCCTCACCTTCAGGTTGATGCAGCAG +
Preference number: 3 (lower is better)
Translates to: EGQPCVLELSLQ*CLFLTFRLMQQ
Trigger: CTGCTGCATCAACCTGAAGGTGAGGAAGAGGCACCACTGAAGAGAAAGCTCCAGCACGCATGGTTGTCCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR CAA 90 bp ACCAGAGGGAAGAGATGTGGGAGGCAGGTGTTGGTCCCTAAAGATTCTGGAAGATTCCTCACCTTCAGGTaGATGCAGCAGTCGGTGGAG +
Preference number: 3 (lower is better)
Translates to: TRGKRCGRQVLVPKDSGRFLTFR*MQQSVE
Trigger: CTCCACCGACTGCTGCATCAACCTGAAGGTGAGGAA...TCTTCCAGAATCTTTAGGGACCAACACCTGCCTCCCACATCTCTTCCCTCTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR CAA 90 bp CCTGAGGAGCTTGCACTTCTGCAGACAGTGGTTGGCACCTCAGCACCAGAGGGATCAAACCAGTGTAAGTaGCTTGGTTTCTCATGGAAA +
Preference number: 3 (lower is better)
Translates to: PEELALLQTVVGTSAPEGSNQCK*LGFSWK
Trigger: TTTCCATGAGAAACCAAGCAACTTACACTGGTTTGA...TCCCTCTGGTGCTGAGGTGCCAACCACTGTCTGCAGAAGTGCAAGCTCCTCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR CAA 90 bp CCTGAGGAGCTTGCACTTCTGCAGACAGTGGTTGGCACCTCAGCACCAGAGGGAAGGGTGATGACATCATaGTGTTATAACTGTTCATCC +
Preference number: 3 (lower is better)
Translates to: PEELALLQTVVGTSAPEGRVMTS*CYNCSS
Trigger: GGATGAACAGTTATAACACAATGATGTCATCACCCT...TCCCTCTGGTGCTGAGGTGCCAACCACTGTCTGCAGAAGTGCAAGCTCCTCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR TCA 72 bp AGAAGCAAACAATGGAATGTATGCAGAGCGCCCCTCTaGGGGCAAGCGTTAGCAGGTGCTGATGAGCTAGAA +
Preference number: 3 (lower is better)
Translates to: RSKQWNVCRAPL*GQALAGADELE
Trigger: TTCTAGCTCATCAGCACCTGCTAACGCTTGCCCTCAGAGGGGCGCTCTGCATACATTCCATTGTTTGCTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR TCA 72 bp TTTCTCTTCAGTGGTGCCTCTTCCTCACCTTCAGGTTaGTGCAGCAGTCGGTGGAGTCTGTATGGAACATGG +
Preference number: 3 (lower is better)
Translates to: FLFSGASSSPSG*CSSRWSLYGTW
Trigger: CCATGTTCCATACAGACTCCACCGACTGCTGCATCAACCTGAAGGTGAGGAAGAGGCACCACTGAAGAGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR TCA 72 bp AGCAGCACCCAACCTAGCTGGAGCTGTGGAATTCAGTaGTGTGAAGACCTTGCTCAAAGAGTGGATCACTAC +
Preference number: 3 (lower is better)
Translates to: SSTQPSWSCGIQ*CEDLAQRVDHY
Trigger: GTAGTGATCCACTCTTTGAGCAAGGTCTTCACATCACTGAATTCCACAGCTCCAGCTAGGTTGGGTGCTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR GCA 72 bp CCAAGAATGAAGCTAAGTCTGAAGGACAACCATGCGTaGTGGAGCTTTCTCTTCAGTGGTGCCTCTTCCTCA +
Preference number: 3 (lower is better)
Translates to: PRMKLSLKDNHA*WSFLFSGASSS
Trigger: TGAGGAAGAGGCACCACTGAAGAGAAAGCTCCAGCACGCATGGTTGTCCTTCAGACTTAGCTTCATTCTTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR CCA 72 bp CTCCTGACTAGTACAAGCAGTAATTGTAGCCAGCCATaGCTGCACACAGAGCAGAAGGAAAAAGCGAAGTCC +
Preference number: 3 (lower is better)
Translates to: LLTSTSSNCSQP*LHTEQKEKAKS
Trigger: GGACTTCGCTTTTTCCTTCTGCTCTGTGTGCAGCCATGGCTGGCTACAATTACTGCTTGTACTAGTCAGGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR CCA 72 bp AGAATGAAGCTAAGTCTGAAGGACAACCATGCGTGCTaGAGCTTTCTCTTCAGTGGTGCCTCTTCCTCACCT +
Preference number: 3 (lower is better)
Translates to: RMKLSLKDNHAC*SFLFSGASSSP
Trigger: AGGTGAGGAAGAGGCACCACTGAAGAGAAAGCTCCAGCACGCATGGTTGTCCTTCAGACTTAGCTTCATTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR CAA 90 bp TGCGTGCTGGAGCTTTCTCTTCAGTGGTGCCTCTTCCTCACCTTCAGGTTGATGACCAGTGTAAGTTGCTaGGTTTCTCATGGAAAACAT +
Preference number: 3 (lower is better)
Translates to: CVLELSLQWCLFLTFRLMTSVSC*VSHGKH
Trigger: ATGTTTTCCATGAGAAACCAAGCAACTTACACTGGT...CATCAACCTGAAGGTGAGGAAGAGGCACCACTGAAGAGAAAGCTCCAGCACGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR CAA 90 bp ACCTGTCCTCTCCTCTATCTAATTCCTGAGGAGCTTGCACTTCTGCAGACAGTGCCAAAAGCTGTGAAATaGCTCAACAGTCCAATGCCA +
Preference number: 3 (lower is better)
Translates to: TCPLLYLIPEELALLQTVPKAVK*LNSPMP
Trigger: TGGCATTGGACTGTTGAGCAATTTCACAGCTTTTGG...CACTGTCTGCAGAAGTGCAAGCTCCTCAGGAATTAGATAGAGGAGAGGACAGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR CAA 90 bp AGCAGCTGTTTTAGACCAGCAGCACCCAACCTAGCTGGAGCTGTGGAATTCAGTACTACTATCTCAGGTTaGTGTGGTAGCTCTGTGATT +
Preference number: 3 (lower is better)
Translates to: SSCFRPAAPNLAGAVEFSTTISG*CGSSVI
Trigger: AATCACAGAGCTACCACACAAACCTGAGATAGTAGT...ACTGAATTCCACAGCTCCAGCTAGGTTGGGTGCTGCTGGTCTAAAACAGCTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR TCA 72 bp CCTCCAAGCCAGCCTGCTACAGATGTCCAAAAGCTGTaGAATTGCTCAACAGTCCAATGCCAGCATTTTACT +
Preference number: 3 (lower is better)
Translates to: PPSQPATDVQKL*NCSTVQCQHFT
Trigger: AGTAAAATGCTGGCATTGGACTGTTGAGCAATTTCACAGCTTTTGGACATCTGTAGCAGGCTGGCTTGGAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR CAA 90 bp AGCAGCTGTTTTAGACCAGCAGCACCCAACCTAGCTGGAGCTGTGGAATTCAGTCGTTTGACTTTATTCTaGACAATGTTCAGGTGGTTT +
Preference number: 3 (lower is better)
Translates to: SSCFRPAAPNLAGAVEFSRLTLF*TMFRWF
Trigger: AAACCACCTGAACATTGTCAAGAATAAAGTCAAACG...ACTGAATTCCACAGCTCCAGCTAGGTTGGGTGCTGCTGGTCTAAAACAGCTGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR CAA 90 bp GGTGTTGCCACATCCTGTTGGAACAGTTTTATTACAGATCCCAGAGCCTCAAGAAGTGATGTGAAGACCTaGCTCAAAGAGTGGATCACT +
Preference number: 3 (lower is better)
Translates to: GVATSCWNSFITDPRASRSDVKT*LKEWIT
Trigger: AGTGATCCACTCTTTGAGCAAGGTCTTCACATCACT...TCTTGAGGCTCTGGGATCTGTAATAAAACTGTTCCAACAGGATGTGGCAACACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR TCA 72 bp TCCTCTTTATTGGCAGTTTGTTCCAATGAGCTCTCCTaGCTAGTACAAGCAGTAATTGTAGCCAGCCATGGC +
Preference number: 3 (lower is better)
Translates to: SSLLAVCSNELS*LVQAVIVASHG
Trigger: GCCATGGCTGGCTACAATTACTGCTTGTACTAGTCAGGAGAGCTCATTGGAACAAACTGCCAATAAAGAGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR TCA 72 bp ACACTCTTTGTTGACTTTACTGGTTCACACAGATCATaGGACCTCCTGAATAGGGGAAGATGCCCAGAAGTG +
Preference number: 3 (lower is better)
Translates to: TLFVDFTGSHRS*DLLNRGRCPEV
Trigger: CACTTCTGGGCATCTTCCCCTATTCAGGAGGTCTCATGATCTGTGTGAACCAGTAAAGTCAACAAAGAGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR TCA 72 bp AGTGTAATTGCCCTTCCAGCATTCTCACAAGTACGTTaGTGTCAGGGACCTTCAGTCATGCTTTTCTCACCT +
Preference number: 3 (lower is better)
Translates to: SVIALPAFSQVR*CQGPSVMLFSP
Trigger: AGGTGAGAAAAGCATGACTGAAGGTCCCTGACATCAACGTACTTGTGAGAATGCTGGAAGGGCAATTACACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR GCA 72 bp CCGATGGAAGAAGACATCCTGCAGGTTGTGAGATACTaGACTGACCTCATAGAGGAGAAAGACTTGGAAAAA +
Preference number: 3 (lower is better)
Translates to: PMEEDILQVVRY*TDLIEEKDLEK
Trigger: TTTTTCCAAGTCTTTCTCCTCTATGAGGTCAGTGCAGTATCTCACAACCTGCAGGATGTCTTCTTCCATCGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR CAA 90 bp ACCTGTCCTCTCCTCTATCTAATTCCTGAGGAGCTTGCACTTCTGCAGACAGTGATAGAGGAGAAAGACTaGGAAAAATTGGATCTGGTT +
Preference number: 3 (lower is better)
Translates to: TCPLLYLIPEELALLQTVIEEKD*EKLDLV
Trigger: AACCAGATCCAATTTTTCCAAGTCTTTCTCCTCTAT...CACTGTCTGCAGAAGTGCAAGCTCCTCAGGAATTAGATAGAGGAGAGGACAGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR TCA 72 bp CTGCAGTGTCTCCTCTTTATTGGCAGTTTGTTCCAATaGGCTCTCCTGACTAGTACAAGCAGTAATTGTAGC +
Preference number: 3 (lower is better)
Translates to: LQCLLFIGSLFQ*ALLTSTSSNCS
Trigger: GCTACAATTACTGCTTGTACTAGTCAGGAGAGCTCATTGGAACAAACTGCCAATAAAGAGGAGACACTGCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR TCA 72 bp GGAAGAAGACATCCTGCAGGTTGTGAGATACTGCACTaGCCTCATAGAGGAGAAAGACTTGGAAAAATTGGA +
Preference number: 3 (lower is better)
Translates to: GRRHPAGCEILH*PHRGERLGKIG
Trigger: TCCAATTTTTCCAAGTCTTTCTCCTCTATGAGGTCAGTGCAGTATCTCACAACCTGCAGGATGTCTTCTTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR GCA 72 bp TTTATTCTACTTAAAGGCTGGACCTCCAAGCCAGCCTaGTACAGATGTCCAAAAGCTGTGAAATTGCTCAAC +
Preference number: 3 (lower is better)
Translates to: FILLKGWTSKPA*YRCPKAVKLLN
Trigger: GTTGAGCAATTTCACAGCTTTTGGACATCTGTAGCAGGCTGGCTTGGAGGTCCAGCCTTTAAGTAGAATAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR CCA 72 bp ACCTTCAGGTTGATGCAGCAGTCGGTGGAGTCTGTATaGAACATGGCGTTTGACTTTATTCTTGACAATGTT +
Preference number: 3 (lower is better)
Translates to: TFRLMQQSVESV*NMAFDFILDNV
Trigger: AACATTGTCAAGAATAAAGTCAAACGCCATGTTCCATACAGACTCCACCGACTGCTGCATCAACCTGAAGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR CCA 72 bp GTGGAATTCAGTGATGTGAAGACCTTGCTCAAAGAGTaGATCACTACTATCTCAGGTTTGTGTGGTAGCTCT +
Preference number: 3 (lower is better)
Translates to: VEFSDVKTLLKE*ITTISGLCGSS
Trigger: AGAGCTACCACACAAACCTGAGATAGTAGTGATCCACTCTTTGAGCAAGGTCTTCACATCACTGAATTCCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR TCA 72 bp TGTTGGTCCCTAAAGATTCTGGAAGACACTCTTTGTTaGCTTTACTGGTTCACACAGATCATGAGACCTCCT +
Preference number: 3 (lower is better)
Translates to: CWSLKILEDTLC*LYWFTQIMRPP
Trigger: AGGAGGTCTCATGATCTGTGTGAACCAGTAAAGTCAACAAAGAGTGTCTTCCAGAATCTTTAGGGACCAACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR CCA 72 bp GTTTATTTTCTTAACACTTGGTTTTACTGTCTGGGCTaGCCTTTAAACTCAGTGGCTGAGATTAAAGGCGTG +
Preference number: 3 (lower is better)
Translates to: VYFLNTWFYCLG*PLNSVAEIKGV
Trigger: CACGCCTTTAATCTCAGCCACTGAGTTTAAAGGCCAGCCCAGACAGTAAAACCAAGTGTTAAGAAAATAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR CAA 90 bp TTTGGTATTTTACAGATTGACCAGTCTGTTTTAGAAGCGCTCCCACTTGATCTCTATGGAACATGGCGTTaGACTTTATTCTTGACAATG +
Preference number: 3 (lower is better)
Translates to: FGILQIDQSVLEALPLDLYGTWR*TLFLTM
Trigger: CATTGTCAAGAATAAAGTCAAACGCCATGTTCCATA...GAGATCAAGTGGGAGCGCTTCTAAAACAGACTGGTCAATCTGTAAAATACCAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR-3UTR CAA 90 bp GTATTTTTGGATACAAGTCAAGCTACTTGTCCTTTGAGACTGCTGTTTGAAAGATTACCTGATTGCATTTaGAGACTCTCATACCTCCTC +
Preference number: 3 (lower is better)
Translates to: VFLDTSQATCPLRLLFERLPDCI*RLSYLL
Trigger: GAGGAGGTATGAGAGTCTCAAAATGCAATCAGGTAA...TCTTTCAAACAGCAGTCTCAAAGGACAAGTAGCTTGACTTGTATCCAAAAATAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR TCA 72 bp ACAAAGAGTCAATGGTATTATTACCTGATTGCATTTTaGGACTCTCATACCTCCTCTTTTAGTGCCAAAGAA +
Preference number: 3 (lower is better)
Translates to: TKSQWYYYLIAF*DSHTSSFSAKE
Trigger: TTCTTTGGCACTAAAAGAGGAGGTATGAGAGTCTCAAAATGCAATCAGGTAATAATACCATTGACTCTTTGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR TCA 72 bp TACAAGTCAAGCTACTTGTCCTTTGAGACTGCTGTTTaGAAGAATGTGGGTTCAAAACATGAAATCTCAAAA +
Preference number: 3 (lower is better)
Translates to: YKSSYLSFETAV*KNVGSKHEISK
Trigger: TTTTGAGATTTCATGTTTTGAACCCACATTCTTTCAAACAGCAGTCTCAAAGGACAAGTAGCTTGACTTGTA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR TCA 90 bp GGTGAGTGCAGGCACGCTGGACTGTGGGGCGGGGAACTGACCACTGTCAAACCATGTCAGGAGTCCCTCTaGGTGTCAACACCTCCTCCT +
Preference number: 4 (lower is better)
Translates to: GECRHAGLWGGELTTVKPCQESL*VSTPPP
Trigger: AGGAGGAGGTGTTGACACTCAGAGGGACTCCTGACA...TGGTTTGACAGTGGTCAGTTCCCCGCCCCACAGTCCAGCGTGCCTGCACTCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR TCA 90 bp GGTGAGTGCAGGCACGCTGGACTGTGGGGCGGGGAACTGACCACTGTCAAACCAGGCCTCGAATCTGAGTaGCAATGGGCCCTTCTACTC +
Preference number: 4 (lower is better)
Translates to: GECRHAGLWGGELTTVKPGLESE*QWALLL
Trigger: GAGTAGAAGGGCCCATTGTCACTCAGATTCGAGGCC...TGGTTTGACAGTGGTCAGTTCCCCGCCCCACAGTCCAGCGTGCCTGCACTCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CCA 90 bp GGTGAGTGCAGGCACGCTGGACTGTGGGGCGGGGAACTGACCACTGTCAAACCAGTCTTCCTCTTCCTCTaGCTCAACAGAAGGTGGCGT +
Preference number: 4 (lower is better)
Translates to: GECRHAGLWGGELTTVKPVFLFL*LNRRWR
Trigger: ACGCCACCTTCTGTTGAGCCAGAGGAAGAGGAAGAC...TGGTTTGACAGTGGTCAGTTCCCCGCCCCACAGTCCAGCGTGCCTGCACTCACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR TCA 90 bp TGCGTGCTGGAGCTTTCTCTTCAGTGGTGCCTCTTCCTCACCTTCAGGTTGATGAGGAGGCCTCGAATCTaGGTGACAATGGGCCCTTCT +
Preference number: 4 (lower is better)
Translates to: CVLELSLQWCLFLTFRLMRRPRI*VTMGPS
Trigger: AGAAGGGCCCATTGTCACTCAGATTCGAGGCCTCCT...CATCAACCTGAAGGTGAGGAAGAGGCACCACTGAAGAGAAAGCTCCAGCACGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR GCA 90 bp CCTGAGGAGCTTGCACTTCTGCAGACAGTGGTTGGCACCTCAGCACCAGAGGGAAACCTCCATGACTTGTaGTCTCAGCTCTTCACAGTG +
Preference number: 4 (lower is better)
Translates to: PEELALLQTVVGTSAPEGNLHDL*SQLFTV
Trigger: CACTGTGAAGAGCTGAGAGCACAAGTCATGGAGGTT...TCCCTCTGGTGCTGAGGTGCCAACCACTGTCTGCAGAAGTGCAAGCTCCTCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CCA 90 bp CTAGATCCGATGGAAGAAGACATCCTGCAGGTTGTGAGATACTGCACTGACCTCGGGTCACTTCGGCTCTaGCTCTGGCTTCTCTCTGGG +
Preference number: 4 (lower is better)
Translates to: LDPMEEDILQVVRYCTDLGSLRL*LWLLSG
Trigger: CCCAGAGAGAAGCCAGAGCCAGAGCCGAAGTGACCC...GAGGTCAGTGCAGTATCTCACAACCTGCAGGATGTCTTCTTCCATCGGATCTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CCA 90 bp GGTGAGTGCAGGCACGCTGGACTGTGGGGCGGGGAACTGACCACTGTCAAACCAAATAATCAGCATCCCTaGGATTCGGACATTCTCTCT +
Preference number: 4 (lower is better)
Translates to: GECRHAGLWGGELTTVKPNNQHP*DSDILS
Trigger: AGAGAGAATGTCCGAATCCCAGGGATGCTGATTATT...TGGTTTGACAGTGGTCAGTTCCCCGCCCCACAGTCCAGCGTGCCTGCACTCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR TCA 90 bp ACCATGCGTGCTGGAGCTTTCTCTTCAGTGGTGCCTCTTCCTCACCTTCAGGTTTTTCCCTTTGACTTCTaGGGCTCCTGCTCCTTGGCA +
Preference number: 4 (lower is better)
Translates to: TMRAGAFSSVVPLPHLQVFPFDF*GSCSLA
Trigger: TGCCAAGGAGCAGGAGCCTCAGAAGTCAAAGGGAAA...AACCTGAAGGTGAGGAAGAGGCACCACTGAAGAGAAAGCTCCAGCACGCATGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR TCA 90 bp AGCAGCTGTTTTAGACCAGCAGCACCCAACCTAGCTGGAGCTGTGGAATTCAGTTCCTCAGGTCTCTTCTaGGGCTCCCTCTGTTTACTC +
Preference number: 4 (lower is better)
Translates to: SSCFRPAAPNLAGAVEFSSSGLF*GSLCLL
Trigger: GAGTAAACAGAGGGAGCCTCAGAAGAGACCTGAGGA...ACTGAATTCCACAGCTCCAGCTAGGTTGGGTGCTGCTGGTCTAAAACAGCTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR GCA 90 bp AGCAGCTGTTTTAGACCAGCAGCACCCAACCTAGCTGGAGCTGTGGAATTCAGTGCGCTCTTTCTTTTCTaGCTTCTTCTGGGCCACCGT +
Preference number: 4 (lower is better)
Translates to: SSCFRPAAPNLAGAVEFSALFLF*LLLGHR
Trigger: ACGGTGGCCCAGAAGAAGGCAGAAAAGAAAGAGCGC...ACTGAATTCCACAGCTCCAGCTAGGTTGGGTGCTGCTGGTCTAAAACAGCTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CCA 90 bp TGCGTGCTGGAGCTTTCTCTTCAGTGGTGCCTCTTCCTCACCTTCAGGTTGATGTGGCTCAACAGAAGGTaGCGTCTCTTCCTTTTCTGG +
Preference number: 4 (lower is better)
Translates to: CVLELSLQWCLFLTFRLMWLNRR*RLFLFW
Trigger: CCAGAAAAGGAAGAGACGCCACCTTCTGTTGAGCCA...CATCAACCTGAAGGTGAGGAAGAGGCACCACTGAAGAGAAAGCTCCAGCACGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR GCA 90 bp ACCTGTCCTCTCCTCTATCTAATTCCTGAGGAGCTTGCACTTCTGCAGACAGTGGTCGTCTTCCAGAGCTaGAGCAGTGTCTCCTTTCTC +
Preference number: 4 (lower is better)
Translates to: TCPLLYLIPEELALLQTVVVFQS*SSVSFL
Trigger: GAGAAAGGAGACACTGCTGCAGCTCTGGAAGACGAC...CACTGTCTGCAGAAGTGCAAGCTCCTCAGGAATTAGATAGAGGAGAGGACAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR GCA 90 bp TGCGTGCTGGAGCTTTCTCTTCAGTGGTGCCTCTTCCTCACCTTCAGGTTGATGCTGTGTAATACCACCTaGTTCGCCATCTTGCACATG +
Preference number: 4 (lower is better)
Translates to: CVLELSLQWCLFLTFRLMLCNTT*FAILHM
Trigger: CATGTGCAAGATGGCGAAGCAGGTGGTATTACACAG...CATCAACCTGAAGGTGAGGAAGAGGCACCACTGAAGAGAAAGCTCCAGCACGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR GCA 90 bp ACCTGTCCTCTCCTCTATCTAATTCCTGAGGAGCTTGCACTTCTGCAGACAGTGGAACCAGTCTTTGAGTaGATCGATGGACTGCCGGCT +
Preference number: 4 (lower is better)
Translates to: TCPLLYLIPEELALLQTVEPVFE*IDGLPA
Trigger: AGCCGGCAGTCCATCGATGCACTCAAAGACTGGTTC...CACTGTCTGCAGAAGTGCAAGCTCCTCAGGAATTAGATAGAGGAGAGGACAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CCA 90 bp ACTCATCAGCAGCCAACCAGTACATCTGGTAAGAGGAGAGAACTGTCATGTCCCCGTCTCTTCCTTTTCTaGTCCTCCTTGGTCCACAGC +
Preference number: 4 (lower is better)
Translates to: THQQPTSTSGKRRELSCPRLFLF*SSLVHS
Trigger: GCTGTGGACCAAGGAGGACCAGAAAAGGAAGAGACG...GGGACATGACAGTTCTCTCCTCTTACCAGATGTACTGGTTGGCTGCTGATGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CCA 90 bp ACCAGAGGGAAGAGATGTGGGAGGCAGGTGTTGGTCCCTAAAGATTCTGGAAGATGTGGTGCCCATTCCTaGGAGAGCTTTAACCTCCAT +
Preference number: 4 (lower is better)
Translates to: TRGKRCGRQVLVPKDSGRCGAHS*ESFNLH
Trigger: ATGGAGGTTAAAGCTCTCCCAGGAATGGGCACCACA...TCTTCCAGAATCTTTAGGGACCAACACCTGCCTCCCACATCTCTTCCCTCTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR GCA 90 bp TGCGTGCTGGAGCTTTCTCTTCAGTGGTGCCTCTTCCTCACCTTCAGGTTGATGCCAAGGACACGAAAGTaGGGGGATCTTTATTCTCAT +
Preference number: 4 (lower is better)
Translates to: CVLELSLQWCLFLTFRLMPRTRK*GDLYSH
Trigger: ATGAGAATAAAGATCCCCGCACTTTCGTGTCCTTGG...CATCAACCTGAAGGTGAGGAAGAGGCACCACTGAAGAGAAAGCTCCAGCACGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR GCA 90 bp CTAGATCCGATGGAAGAAGACATCCTGCAGGTTGTGAGATACTGCACTGACCTCGCCATCACCAGTATGTaGAGAGGTAGGTACCAAGGA +
Preference number: 4 (lower is better)
Translates to: LDPMEEDILQVVRYCTDLAITSM*RGRYQG
Trigger: TCCTTGGTACCTACCTCTGCACATACTGGTGATGGC...GAGGTCAGTGCAGTATCTCACAACCTGCAGGATGTCTTCTTCCATCGGATCTAG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR GCA 90 bp ACCATGCGTGCTGGAGCTTTCTCTTCAGTGGTGCCTCTTCCTCACCTTCAGGTTATCAGCCATCTCTTGTaGGTCCCGTTCAATTCTTAC +
Preference number: 4 (lower is better)
Translates to: TMRAGAFSSVVPLPHLQVISHLL*VPFNSY
Trigger: GTAAGAATTGAACGGGACGCACAAGAGATGGCTGAT...AACCTGAAGGTGAGGAAGAGGCACCACTGAAGAGAAAGCTCCAGCACGCATGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR TCA 90 bp ACCTGTCCTCTCCTCTATCTAATTCCTGAGGAGCTTGCACTTCTGCAGACAGTGTGTTTCTCAGGTTACTaGAAGACTCGTGTCCAGGAG +
Preference number: 4 (lower is better)
Translates to: TCPLLYLIPEELALLQTVCFSGY*KTRVQE
Trigger: CTCCTGGACACGAGTCTTTCAGTAACCTGAGAAACA...CACTGTCTGCAGAAGTGCAAGCTCCTCAGGAATTAGATAGAGGAGAGGACAGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR GCA 90 bp GCTCTCCTGACTAGTACAAGCAGTAATTGTAGCCAGCCATGGCTGCACACAGAGTACTCTGCTCCTTCTTaGCCTTCTCTAGCTCTTCTT +
Preference number: 4 (lower is better)
Translates to: ALLTSTSSNCSQPWLHTEYSAPS*PSLALL
Trigger: AAGAAGAGCTAGAGAAGGGCAAGAAGGAGCAGAGTA...CTCTGTGTGCAGCCATGGCTGGCTACAATTACTGCTTGTACTAGTCAGGAGAGC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR GCA 90 bp ACCTGTCCTCTCCTCTATCTAATTCCTGAGGAGCTTGCACTTCTGCAGACAGTGTCCCTCTGTTTACTCTaGTCCTTCTTGCCCTTCTCT +
Preference number: 4 (lower is better)
Translates to: TCPLLYLIPEELALLQTVSLCLL*SFLPFS
Trigger: AGAGAAGGGCAAGAAGGAGCAGAGTAAACAGAGGGA...CACTGTCTGCAGAAGTGCAAGCTCCTCAGGAATTAGATAGAGGAGAGGACAGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR GCA 90 bp ACCTGTCCTCTCCTCTATCTAATTCCTGAGGAGCTTGCACTTCTGCAGACAGTGCAGCTCTTCACAGTGTaGAAGCCTCTTGCTCAACAT +
Preference number: 4 (lower is better)
Translates to: TCPLLYLIPEELALLQTVQLFTV*KPLAQH
Trigger: ATGTTGAGCAAGAGGCTTGCACACTGTGAAGAGCTG...CACTGTCTGCAGAAGTGCAAGCTCCTCAGGAATTAGATAGAGGAGAGGACAGGT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR TCA 90 bp GGTGTTGCCACATCCTGTTGGAACAGTTTTATTACAGATCCCAGAGCCTCAAGACCACAAGAAGGTAGATaGGACTTCCCATGCCATCAC +
Preference number: 4 (lower is better)
Translates to: GVATSCWNSFITDPRASRPQEGR*DFPCHH
Trigger: GTGATGGCATGGGAAGTCTCATCTACCTTCTTGTGG...TCTTGAGGCTCTGGGATCTGTAATAAAACTGTTCCAACAGGATGTGGCAACACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR TCA 90 bp TGCGTGCTGGAGCTTTCTCTTCAGTGGTGCCTCTTCCTCACCTTCAGGTTGATGTTGGATCTCGAGAATTaGAAATGTATTGAGGGAGGA +
Preference number: 4 (lower is better)
Translates to: CVLELSLQWCLFLTFRLMLDLEN*KCIEGG
Trigger: TCCTCCCTCAATACATTTTCAATTCTCGAGATCCAA...CATCAACCTGAAGGTGAGGAAGAGGCACCACTGAAGAGAAAGCTCCAGCACGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR GCA 90 bp TGCGTGCTGGAGCTTTCTCTTCAGTGGTGCCTCTTCCTCACCTTCAGGTTGATGGCAGCATTCAAACCCTaGTGTGCAAATTCTACAATA +
Preference number: 4 (lower is better)
Translates to: CVLELSLQWCLFLTFRLMAAFKP*CANSTI
Trigger: TATTGTAGAATTTGCACAGCAGGGTTTGAATGCTGC...CATCAACCTGAAGGTGAGGAAGAGGCACCACTGAAGAGAAAGCTCCAGCACGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR GCA 90 bp TGCGTGCTGGAGCTTTCTCTTCAGTGGTGCCTCTTCCTCACCTTCAGGTTGATGAAAGGCCAAAATTACTaGATACTGGGGATCATGTTC +
Preference number: 4 (lower is better)
Translates to: CVLELSLQWCLFLTFRLMKGQNY*ILGIMF
Trigger: GAACATGATCCCCAGTATGCAGTAATTTTGGCCTTT...CATCAACCTGAAGGTGAGGAAGAGGCACCACTGAAGAGAAAGCTCCAGCACGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR GCA 90 bp ACCATGCGTGCTGGAGCTTTCTCTTCAGTGGTGCCTCTTCCTCACCTTCAGGTTGGAGGATTTTCATCTTaGAGGGAAATACTGCTATGT +
Preference number: 4 (lower is better)
Translates to: TMRAGAFSSVVPLPHLQVGGFSS*REILLC
Trigger: ACATAGCAGTATTTCCCTGCAAGATGAAAATCCTCC...AACCTGAAGGTGAGGAAGAGGCACCACTGAAGAGAAAGCTCCAGCACGCATGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CCA 90 bp AGCAGCTGTTTTAGACCAGCAGCACCCAACCTAGCTGGAGCTGTGGAATTCAGTTTTTCTGCCTTCTTCTaGGCCACCGTCTTAATTTTG +
Preference number: 4 (lower is better)
Translates to: SSCFRPAAPNLAGAVEFSFSAFF*ATVLIL
Trigger: CAAAATTAAGACGGTGGCCCAGAAGAAGGCAGAAAA...ACTGAATTCCACAGCTCCAGCTAGGTTGGGTGCTGCTGGTCTAAAACAGCTGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CCA 90 bp GCTCTCCTGACTAGTACAAGCAGTAATTGTAGCCAGCCATGGCTGCACACAGAGAATCAGTATCATCCTTaGTACTGTCTTCGCTCTTGT +
Preference number: 4 (lower is better)
Translates to: ALLTSTSSNCSQPWLHTENQYHP*YCLRSC
Trigger: ACAAGAGCGAAGACAGTACCAAGGATGATACTGATT...CTCTGTGTGCAGCCATGGCTGGCTACAATTACTGCTTGTACTAGTCAGGAGAGC
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CCA 90 bp ACCTGTCCTCTCCTCTATCTAATTCCTGAGGAGCTTGCACTTCTGCAGACAGTGGCCTCTTGCTCAACATaGTTTGAGTTAACTCCACAA +
Preference number: 4 (lower is better)
Translates to: TCPLLYLIPEELALLQTVASCST*FELTPQ
Trigger: TTGTGGAGTTAACTCAAACCATGTTGAGCAAGAGGC...CACTGTCTGCAGAAGTGCAAGCTCCTCAGGAATTAGATAGAGGAGAGGACAGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR TCA 90 bp ACTCATCAGCAGCCAACCAGTACATCTGGTAAGAGGAGAGAACTGTCATGTCCCTGCATATGGCACCTCTaGTGTTTTCAGAAATTCAAG +
Preference number: 4 (lower is better)
Translates to: THQQPTSTSGKRRELSCPCIWHL*CFQKFK
Trigger: CTTGAATTTCTGAAAACATCAGAGGTGCCATATGCA...GGGACATGACAGTTCTCTCCTCTTACCAGATGTACTGGTTGGCTGCTGATGAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR GCA 90 bp ACCTGTCCTCTCCTCTATCTAATTCCTGAGGAGCTTGCACTTCTGCAGACAGTGTACAATAATGGCCTTTaGACGCTCCTCAAATTCATC +
Preference number: 4 (lower is better)
Translates to: TCPLLYLIPEELALLQTVYNNGL*TLLKFI
Trigger: GATGAATTTGAGGAGCGTGCAAAGGCCATTATTGTA...CACTGTCTGCAGAAGTGCAAGCTCCTCAGGAATTAGATAGAGGAGAGGACAGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR GCA 90 bp GGTGTTGCCACATCCTGTTGGAACAGTTTTATTACAGATCCCAGAGCCTCAAGAAGAGCCCAGTGTAGATaGCTGGACATAAACTCCTTT +
Preference number: 4 (lower is better)
Translates to: GVATSCWNSFITDPRASRRAQCR*LDINSF
Trigger: AAAGGAGTTTATGTCCAGGCATCTACACTGGGCTCT...TCTTGAGGCTCTGGGATCTGTAATAAAACTGTTCCAACAGGATGTGGCAACACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CCA 90 bp AGCAGCTGTTTTAGACCAGCAGCACCCAACCTAGCTGGAGCTGTGGAATTCAGTCTTATCTTCATAAACTaGCCTTTTCTTTGGCAACGA +
Preference number: 4 (lower is better)
Translates to: SSCFRPAAPNLAGAVEFSLIFIN*PFLWQR
Trigger: TCGTTGCCAAAGAAAAGGCCAGTTTATGAAGATAAG...ACTGAATTCCACAGCTCCAGCTAGGTTGGGTGCTGCTGGTCTAAAACAGCTGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CCA 90 bp CATTCTCGTTCACTTCCTCAACAGGAAGAAGTCTCGGCTTCTACCCCTGGTGCATGTCAACAACTAAAATaGCAATGTCACAAAGAGAGC +
Preference number: 4 (lower is better)
Translates to: HSRSLPQQEEVSASTPGACQQLK*QCHKES
Trigger: GCTCTCTTTGTGACATTGCCATTTTAGTTGTTGACA...TGCACCAGGGGTAGAAGCCGAGACTTCTTCCTGTTGAGGAAGTGAACGAGAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CCA 90 bp CATTCTCGTTCACTTCCTCAACAGGAAGAAGTCTCGGCTTCTACCCCTGGTGCAACATCCACCTGCTTGTaGTTTATTTCAATGCTTGTT +
Preference number: 4 (lower is better)
Translates to: HSRSLPQQEEVSASTPGATSTCL*FISMLV
Trigger: AACAAGCATTGAAATAAACCACAAGCAGGTGGATGT...TGCACCAGGGGTAGAAGCCGAGACTTCTTCCTGTTGAGGAAGTGAACGAGAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR CAA 72 bp CTAGCTGGAGCTGTGGAATTCAGTGATGTGAAGACCTaGCTCAAAGAGTGGATCACTACTATCTCAGGTTTG +
Preference number: 4 (lower is better)
Translates to: LAGAVEFSDVKT*LKEWITTISGL
Trigger: CAAACCTGAGATAGTAGTGATCCACTCTTTGAGCAAGGTCTTCACATCACTGAATTCCACAGCTCCAGCTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR GCA 90 bp TTTGGTATTTTACAGATTGACCAGTCTGTTTTAGAAGCGCTCCCACTTGATCTCAGCTCCTTCTATTTCTaGAGCCAAGGCGCCCAAATC +
Preference number: 4 (lower is better)
Translates to: FGILQIDQSVLEALPLDLSSFYF*SQGAQI
Trigger: GATTTGGGCGCCTTGGCTGCAGAAATAGAAGGAGCT...GAGATCAAGTGGGAGCGCTTCTAAAACAGACTGGTCAATCTGTAAAATACCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CCA 90 bp CTAGATCCGATGGAAGAAGACATCCTGCAGGTTGTGAGATACTGCACTGACCTCTTAGCCAAAGCTTCCTaGATAGCTTTAACAGTAGAT +
Preference number: 4 (lower is better)
Translates to: LDPMEEDILQVVRYCTDLLAKAS*IALTVD
Trigger: ATCTACTGTTAAAGCTATCCAGGAAGCTTTGGCTAA...GAGGTCAGTGCAGTATCTCACAACCTGCAGGATGTCTTCTTCCATCGGATCTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR CAA 72 bp TGCAGCAGTCGGTGGAGTCTGTATGGAACATGGCGTTaGACTTTATTCTTGACAATGTTCAGGTGGTTTTAC +
Preference number: 4 (lower is better)
Translates to: CSSRWSLYGTWR*TLFLTMFRWFY
Trigger: GTAAAACCACCTGAACATTGTCAAGAATAAAGTCAAACGCCATGTTCCATACAGACTCCACCGACTGCTGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR CAA 72 bp GTGTTGGTCCCTAAAGATTCTGGAAGACACTCTTTGTaGACTTTACTGGTTCACACAGATCATGAGACCTCC +
Preference number: 4 (lower is better)
Translates to: VLVPKDSGRHSL*TLLVHTDHETS
Trigger: GGAGGTCTCATGATCTGTGTGAACCAGTAAAGTCAACAAAGAGTGTCTTCCAGAATCTTTAGGGACCAACAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR CAA 72 bp CAGGTGTTGGTCCCTAAAGATTCTGGAAGACACTCTTaGTTGACTTTACTGGTTCACACAGATCATGAGACC +
Preference number: 4 (lower is better)
Translates to: QVLVPKDSGRHS*LTLLVHTDHET
Trigger: GGTCTCATGATCTGTGTGAACCAGTAAAGTCAACAAAGAGTGTCTTCCAGAATCTTTAGGGACCAACACCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR TCA 90 bp TTGACTTTATTCTTGACAATGTTCAGGTGGTTTTACAGCAGACTTATGGAAGCAGTTCCTTGTTTCACTTaGCCAGCCTCCACAGTGACC +
Preference number: 4 (lower is better)
Translates to: LTLFLTMFRWFYSRLMEAVPCFT*PASTVT
Trigger: GGTCACTGTGGAGGCTGGTCAAGTGAAACAAGGAAC...TGCTTCCATAAGTCTGCTGTAAAACCACCTGAACATTGTCAAGAATAAAGTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR CAA 72 bp CACTGCTGGTTGGTACTTGTGCTGGTCTTAGTATTTTaGGATACAAGTCAAGCTACTTGTCCTTTGAGACTG +
Preference number: 4 (lower is better)
Translates to: HCWLVLVLVLVF*DTSQATCPLRL
Trigger: CAGTCTCAAAGGACAAGTAGCTTGACTTGTATCCAAAAATACTAAGACCAGCACAAGTACCAACCAGCAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR TCA 90 bp GGTGTTGCCACATCCTGTTGGAACAGTTTTATTACAGATCCCAGAGCCTCAAGAGGATCAATTCATCTTTaGGAACTGGGATTTCATCAT +
Preference number: 4 (lower is better)
Translates to: GVATSCWNSFITDPRASRGSIHL*ELGFHH
Trigger: ATGATGAAATCCCAGTTCTCAAAGATGAATTGATCC...TCTTGAGGCTCTGGGATCTGTAATAAAACTGTTCCAACAGGATGTGGCAACACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR CAA 72 bp GTTAGCACAGAAATTGGATTGCTCATATCCAGTGTCTaGGAAGGTTTTGTCCTAGCTTTGCTGTTTAAGGAC +
Preference number: 4 (lower is better)
Translates to: VSTEIGLLISSV*EGFVLALLFKD
Trigger: GTCCTTAAACAGCAAAGCTAGGACAAAACCTTCCAAGACACTGGATATGAGCAATCCAATTTCTGTGCTAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR TCA 90 bp TTTGGTATTTTACAGATTGACCAGTCTGTTTTAGAAGCGCTCCCACTTGATCTCATGTTCCAACATCACTaGAGCCTTCATAACGTCCTT +
Preference number: 4 (lower is better)
Translates to: FGILQIDQSVLEALPLDLMFQHH*SLHNVL
Trigger: AAGGACGTTATGAAGGCTTCAGTGATGTTGGAACAT...GAGATCAAGTGGGAGCGCTTCTAAAACAGACTGGTCAATCTGTAAAATACCAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CCA 90 bp GGTGTTGCCACATCCTGTTGGAACAGTTTTATTACAGATCCCAGAGCCTCAAGATTCATCTTTGAGAACTaGGATTTCATCATCCTTGTA +
Preference number: 4 (lower is better)
Translates to: GVATSCWNSFITDPRASRFIFEN*DFIILV
Trigger: TACAAGGATGATGAAATCCCAGTTCTCAAAGATGAA...TCTTGAGGCTCTGGGATCTGTAATAAAACTGTTCCAACAGGATGTGGCAACACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CCA 90 bp TTTGGTATTTTACAGATTGACCAGTCTGTTTTAGAAGCGCTCCCACTTGATCTCGTCCTTTTTATGGACTaGGCCAATGTTAATTCCTGC +
Preference number: 4 (lower is better)
Translates to: FGILQIDQSVLEALPLDLVLFMD*ANVNSC
Trigger: GCAGGAATTAACATTGGCCCAGTCCATAAAAAGGAC...GAGATCAAGTGGGAGCGCTTCTAAAACAGACTGGTCAATCTGTAAAATACCAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR GCA 90 bp TTTGGTATTTTACAGATTGACCAGTCTGTTTTAGAAGCGCTCCCACTTGATCTCTCTTTACTCTCTAGCTaGTGTGGTGTTTTCTTCTTC +
Preference number: 4 (lower is better)
Translates to: FGILQIDQSVLEALPLDLSLLSS*CGVFFF
Trigger: GAAGAAGAAAACACCACAGCAGCTAGAGAGTAAAGA...GAGATCAAGTGGGAGCGCTTCTAAAACAGACTGGTCAATCTGTAAAATACCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR GCA 90 bp GTATTTTTGGATACAAGTCAAGCTACTTGTCCTTTGAGACTGCTGTTTGAAAGATTTGTGGCACCAATCTaGTGTGTAATACCACCTGCT +
Preference number: 4 (lower is better)
Translates to: VFLDTSQATCPLRLLFERFVAPI*CVIPPA
Trigger: AGCAGGTGGTATTACACAGCAGATTGGTGCCACAAA...TCTTTCAAACAGCAGTCTCAAAGGACAAGTAGCTTGACTTGTATCCAAAAATAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CCA 90 bp TTGACTTTATTCTTGACAATGTTCAGGTGGTTTTACAGCAGACTTATGGAAGCAAGAATCTTTACTCCCTaGGCCGCTTCCACTTCTTTA +
Preference number: 4 (lower is better)
Translates to: LTLFLTMFRWFYSRLMEARIFTP*AASTSL
Trigger: TAAAGAAGTGGAAGCGGCCCAGGGAGTAAAGATTCT...TGCTTCCATAAGTCTGCTGTAAAACCACCTGAACATTGTCAAGAATAAAGTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR TCA 90 bp TTGACTTTATTCTTGACAATGTTCAGGTGGTTTTACAGCAGACTTATGGAAGCATTGCTCAACATGGTTTaGGTTAACTCCACAAGAAGG +
Preference number: 4 (lower is better)
Translates to: LTLFLTMFRWFYSRLMEALLNMV*VNSTRR
Trigger: CCTTCTTGTGGAGTTAACTCAAACCATGTTGAGCAA...TGCTTCCATAAGTCTGCTGTAAAACCACCTGAACATTGTCAAGAATAAAGTCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR GCA 90 bp TTTGGTATTTTACAGATTGACCAGTCTGTTTTAGAAGCGCTCCCACTTGATCTCATTCAAACCCTGCTGTaGAAATTCTACAATAATGGC +
Preference number: 4 (lower is better)
Translates to: FGILQIDQSVLEALPLDLIQTLL*KFYNNG
Trigger: GCCATTATTGTAGAATTTGCACAGCAGGGTTTGAAT...GAGATCAAGTGGGAGCGCTTCTAAAACAGACTGGTCAATCTGTAAAATACCAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR GCA 90 bp TTTGGTATTTTACAGATTGACCAGTCTGTTTTAGAAGCGCTCCCACTTGATCTCTTTGCAACATCCACCTaGTTGTGGTTTATTTCAATG +
Preference number: 4 (lower is better)
Translates to: FGILQIDQSVLEALPLDLFATST*LWFISM
Trigger: CATTGAAATAAACCACAAGCAGGTGGATGTTGCAAA...GAGATCAAGTGGGAGCGCTTCTAAAACAGACTGGTCAATCTGTAAAATACCAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CCA 90 bp TTTGGTATTTTACAGATTGACCAGTCTGTTTTAGAAGCGCTCCCACTTGATCTCAAAATTACTGCATACTaGGGATCATGTTCCAACATC +
Preference number: 4 (lower is better)
Translates to: FGILQIDQSVLEALPLDLKITAY*GSCSNI
Trigger: GATGTTGGAACATGATCCCCAGTATGCAGTAATTTT...GAGATCAAGTGGGAGCGCTTCTAAAACAGACTGGTCAATCTGTAAAATACCAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CCA 90 bp TTTGGTATTTTACAGATTGACCAGTCTGTTTTAGAAGCGCTCCCACTTGATCTCGACCCCTATTACTATTaGATCTCGAGAATTGAAAAT +
Preference number: 4 (lower is better)
Translates to: FGILQIDQSVLEALPLDLDPYYY*ISRIEN
Trigger: ATTTTCAATTCTCGAGATCCAATAGTAATAGGGGTC...GAGATCAAGTGGGAGCGCTTCTAAAACAGACTGGTCAATCTGTAAAATACCAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR GCA 90 bp TTGACTTTATTCTTGACAATGTTCAGGTGGTTTTACAGCAGACTTATGGAAGCAGTCAATCTTATTAAGTaGAACAATGAAGGGGCACTT +
Preference number: 4 (lower is better)
Translates to: LTLFLTMFRWFYSRLMEAVNLIK*NNEGAL
Trigger: AAGTGCCCCTTCATTGTTGCACTTAATAAGATTGAC...TGCTTCCATAAGTCTGCTGTAAAACCACCTGAACATTGTCAAGAATAAAGTCAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR GCA 90 bp GTATTTTTGGATACAAGTCAAGCTACTTGTCCTTTGAGACTGCTGTTTGAAAGACTTGCAGGGAAATACTaGTATGTGCTTAAATTCTTC +
Preference number: 4 (lower is better)
Translates to: VFLDTSQATCPLRLLFERLAGKY*YVLKFF
Trigger: GAAGAATTTAAGCACATAGCAGTATTTCCCTGCAAG...TCTTTCAAACAGCAGTCTCAAAGGACAAGTAGCTTGACTTGTATCCAAAAATAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CCA 90 bp GTATTTTTGGATACAAGTCAAGCTACTTGTCCTTTGAGACTGCTGTTTGAAAGAATAACGTCCTTTTTATaGACTGGGCCAATGTTAATT +
Preference number: 4 (lower is better)
Translates to: VFLDTSQATCPLRLLFERITSFL*TGPMLI
Trigger: AATTAACATTGGCCCAGTCCATAAAAAGGACGTTAT...TCTTTCAAACAGCAGTCTCAAAGGACAAGTAGCTTGACTTGTATCCAAAAATAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
3UTR CAA 72 bp TTAGTATTTTTGGATACAAGTCAAGCTACTTGTCCTTaGAGACTGCTGTTTGAAAGAATGTGGGTTCAAAAC +
Preference number: 4 (lower is better)
Translates to: LVFLDTSQATCP*RLLFERMWVQN
Trigger: GTTTTGAACCCACATTCTTTCAAACAGCAGTCTCAAAGGACAAGTAGCTTGACTTGTATCCAAAAATACTAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CAA 90 bp GGTGAGTGCAGGCACGCTGGACTGTGGGGCGGGGAACTGACCACTGTCAAACCACTCTCCTCCTCCTCTTaGAGCTTAGCCAAAGCTTCC +
Preference number: 5 (lower is better)
Translates to: GECRHAGLWGGELTTVKPLSSSS*SLAKAS
Trigger: GGAAGCTTTGGCTAAGCTCAAAGAGGAGGAGGAGAG...TGGTTTGACAGTGGTCAGTTCCCCGCCCCACAGTCCAGCGTGCCTGCACTCACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS CCA 90 bp TCTGTAGGCTTGACTGCAGCGGCGTCTCTGTCAGCTCTGATGCCTTaGGCTTCCAGAGACAACTCCTCCAGCTCTCTCAGAATGTCGTTC +
Preference number: 5 (lower is better)
Translates to: SVGLTAAASLSALMP*ASRDNSSSSLRMSF
Trigger: GAACGACATTCTGAGAGAGCTGGAGGAGTTGTCTCTGGAAGCCCAAGGCATCAGAGCTGACAGAGACGCCGCTGCAGTCAAGCCTACAGA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CAA 90 bp CATTCTCGTTCACTTCCTCAACAGGAAGAAGTCTCGGCTTCTACCCCTGGTGCAGTCAGCTCTGATGCCTaGGGCTTCCAGAGACAACTC +
Preference number: 5 (lower is better)
Translates to: HSRSLPQQEEVSASTPGAVSSDA*GFQRQL
Trigger: GAGTTGTCTCTGGAAGCCCAAGGCATCAGAGCTGAC...TGCACCAGGGGTAGAAGCCGAGACTTCTTCCTGTTGAGGAAGTGAACGAGAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CAA 90 bp GCTCTCCTGACTAGTACAAGCAGTAATTGTAGCCAGCCATGGCTGCACACAGAGCTTTTCTGGTCCTCCTaGGTCCACAGCTTCCACAGG +
Preference number: 5 (lower is better)
Translates to: ALLTSTSSNCSQPWLHTELFWSS*VHSFHR
Trigger: CCTGTGGAAGCTGTGGACCAAGGAGGACCAGAAAAG...CTCTGTGTGCAGCCATGGCTGGCTACAATTACTGCTTGTACTAGTCAGGAGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CAA 90 bp CATTCTCGTTCACTTCCTCAACAGGAAGAAGTCTCGGCTTCTACCCCTGGTGCAATCCTCCGTTTCGCTTaGTCGTACGCCCGCTCTTCT +
Preference number: 5 (lower is better)
Translates to: HSRSLPQQEEVSASTPGAILRFA*SYARSS
Trigger: AGAAGAGCGGGCGTACGACAAAGCGAAACGGAGGAT...TGCACCAGGGGTAGAAGCCGAGACTTCTTCCTGTTGAGGAAGTGAACGAGAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CAA 90 bp CCTGAGGAGCTTGCACTTCTGCAGACAGTGGTTGGCACCTCAGCACCAGAGGGAGGGATAGGTTCTATTTaGACACAGACCTCTTGTCCT +
Preference number: 5 (lower is better)
Translates to: PEELALLQTVVGTSAPEGGIGSI*TQTSCP
Trigger: AGGACAAGAGGTCTGTGTCAAAATAGAACCTATCCC...TCCCTCTGGTGCTGAGGTGCCAACCACTGTCTGCAGAAGTGCAAGCTCCTCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS GCA 90 bp CCTCAGGTCTCTTCTGAGGCTCCCTCTGTTTACTCTGCTCCTTCTTaGCCTTCTCTAGCTCTTCTTTCTCCTTCATCTTCCGCAACTTCG +
Preference number: 5 (lower is better)
Translates to: PQVSSEAPSVYSAPS*PSLALLSPSSSATS
Trigger: CGAAGTTGCGGAAGATGAAGGAGAAAGAAGAGCTAGAGAAGGGCAAGAAGGAGCAGAGTAAACAGAGGGAGCCTCAGAAGAGACCTGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CAA 90 bp ACTCATCAGCAGCCAACCAGTACATCTGGTAAGAGGAGAGAACTGTCATGTCCCTTGTTTTCTGTAGGCTaGACTGCAGCGGCGTCTCTG +
Preference number: 5 (lower is better)
Translates to: THQQPTSTSGKRRELSCPLFSVG*TAAASL
Trigger: CAGAGACGCCGCTGCAGTCAAGCCTACAGAAAACAA...GGGACATGACAGTTCTCTCCTCTTACCAGATGTACTGGTTGGCTGCTGATGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CAA 90 bp CTAGATCCGATGGAAGAAGACATCCTGCAGGTTGTGAGATACTGCACTGACCTCTTCAACACCCTGAGCTaGGAGGTGTCTAAGGGTCAC +
Preference number: 5 (lower is better)
Translates to: LDPMEEDILQVVRYCTDLFNTLS*EVSKGH
Trigger: GTGACCCTTAGACACCTCCAAGCTCAGGGTGTTGAA...GAGGTCAGTGCAGTATCTCACAACCTGCAGGATGTCTTCTTCCATCGGATCTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CAA 90 bp TGCGTGCTGGAGCTTTCTCTTCAGTGGTGCCTCTTCCTCACCTTCAGGTTGATGTTGGCAACGAGTCTTTaGATGGCACTTCAACACCCT +
Preference number: 5 (lower is better)
Translates to: CVLELSLQWCLFLTFRLMLATSL*MALQHP
Trigger: AGGGTGTTGAAGTGCCATCAAAAGACTCGTTGCCAA...CATCAACCTGAAGGTGAGGAAGAGGCACCACTGAAGAGAAAGCTCCAGCACGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CAA 90 bp ACCATGCGTGCTGGAGCTTTCTCTTCAGTGGTGCCTCTTCCTCACCTTCAGGTTCTTCAAGAGGAACATTaGTGGCACCAATCTGCTGTG +
Preference number: 5 (lower is better)
Translates to: TMRAGAFSSVVPLPHLQVLQEEH*WHQSAV
Trigger: CACAGCAGATTGGTGCCACAAATGTTCCTCTTGAAG...AACCTGAAGGTGAGGAAGAGGCACCACTGAAGAGAAAGCTCCAGCACGCATGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CAA 90 bp GCTCTCCTGACTAGTACAAGCAGTAATTGTAGCCAGCCATGGCTGCACACAGAGTCCTCTTCTTTTCGTTaGGCTTCAAGCTCCTCAAGC +
Preference number: 5 (lower is better)
Translates to: ALLTSTSSNCSQPWLHTESSSFR*ASSSSS
Trigger: GCTTGAGGAGCTTGAAGCCAAACGAAAAGAAGAGGA...CTCTGTGTGCAGCCATGGCTGGCTACAATTACTGCTTGTACTAGTCAGGAGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CAA 90 bp GCTCTCCTGACTAGTACAAGCAGTAATTGTAGCCAGCCATGGCTGCACACAGAGACTATCAGCCATCTCTaGTGCGTCCCGTTCAATTCT +
Preference number: 5 (lower is better)
Translates to: ALLTSTSSNCSQPWLHTETISHL*CVPFNS
Trigger: AGAATTGAACGGGACGCACAAGAGATGGCTGATAGT...CTCTGTGTGCAGCCATGGCTGGCTACAATTACTGCTTGTACTAGTCAGGAGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS GCA 90 bp CTCCACAAGAAGGTAGATGAGACTTCCCATGCCATCACCAGTATGTaGAGAGGTAGGTACCAAGGACACGAAAGTGCGGGGATCTTTATT +
Preference number: 5 (lower is better)
Translates to: LHKKVDETSHAITSM*RGRYQGHESAGIFI
Trigger: AATAAAGATCCCCGCACTTTCGTGTCCTTGGTACCTACCTCTGCACATACTGGTGATGGCATGGGAAGTCTCATCTACCTTCTTGTGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS GCA 90 bp CTGCCAGTCACTCTTCTGCATTTCGTCTCTGAACCAGTCTTTGAGTaGATCGATGGACTGCCGGCTGATCTTGCTGACAAGTATATCTGT +
Preference number: 5 (lower is better)
Translates to: LPVTLLHFVSEPVFE*IDGLPADLADKYIC
Trigger: ACAGATATACTTGTCAGCAAGATCAGCCGGCAGTCCATCGATGCACTCAAAGACTGGTTCAGAGACGAAATGCAGAAGAGTGACTGGCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS CCA 90 bp TCTGGCTCAACAGAAGGTGGCGTCTCTTCCTTTTCTGGTCCTCCTTaGTCCACAGCTTCCACAGGAGCACTTATTTCCAAAGTTTCAGAT +
Preference number: 5 (lower is better)
Translates to: SGSTEGGVSSFSGPP*STASTGALISKVSD
Trigger: ATCTGAAACTTTGGAAATAAGTGCTCCTGTGGAAGCTGTGGACCAAGGAGGACCAGAAAAGGAAGAGACGCCACCTTCTGTTGAGCCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CAA 90 bp CTAGATCCGATGGAAGAAGACATCCTGCAGGTTGTGAGATACTGCACTGACCTCTGTCTCCCAAACATTTaGGGAGATTCCCCAGGGATA +
Preference number: 5 (lower is better)
Translates to: LDPMEEDILQVVRYCTDLCLPNI*GDSPGI
Trigger: TATCCCTGGGGAATCTCCCAAAATGTTTGGGAGACA...GAGGTCAGTGCAGTATCTCACAACCTGCAGGATGTCTTCTTCCATCGGATCTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS TCA 90 bp ACACGTAATTCCTTCATAGGAGGAGGTAAAAGGAGGCCTCGAATCTaGGTGACAATGGGCCCTTCTACTCCAGGGACAATGATTGTATCC +
Preference number: 5 (lower is better)
Translates to: TRNSFIGGGKRRPRI*VTMGPSTPGTMIVS
Trigger: GGATACAATCATTGTCCCTGGAGTAGAAGGGCCCATTGTCACTCAGATTCGAGGCCTCCTTTTACCTCCTCCTATGAAGGAATTACGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CAA 90 bp ACCTGTCCTCTCCTCTATCTAATTCCTGAGGAGCTTGCACTTCTGCAGACAGTGAAACTGGCCTTTTCTTaGGCAACGAGTCTTTTGATG +
Preference number: 5 (lower is better)
Translates to: TCPLLYLIPEELALLQTVKLAFS*ATSLLM
Trigger: CATCAAAAGACTCGTTGCCAAAGAAAAGGCCAGTTT...CACTGTCTGCAGAAGTGCAAGCTCCTCAGGAATTAGATAGAGGAGAGGACAGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CAA 90 bp CTAGATCCGATGGAAGAAGACATCCTGCAGGTTGTGAGATACTGCACTGACCTCGCAACATCCACCTGCTaGTGGTTTATTTCAATGCTT +
Preference number: 5 (lower is better)
Translates to: LDPMEEDILQVVRYCTDLATSTC*WFISML
Trigger: AAGCATTGAAATAAACCACAAGCAGGTGGATGTTGC...GAGGTCAGTGCAGTATCTCACAACCTGCAGGATGTCTTCTTCCATCGGATCTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS TCA 90 bp CTTCTTATCTTCATAAACTGGCCTTTTCTTTGGCAACGAGTCTTTTaGTGGCACTTCAACACCCTGAGCTTGGAGGTGTCTAAGGGTCAC +
Preference number: 5 (lower is better)
Translates to: LLIFINWPFLWQRVF*WHFNTLSLEVSKGH
Trigger: GTGACCCTTAGACACCTCCAAGCTCAGGGTGTTGAAGTGCCATCAAAAGACTCGTTGCCAAAGAAAAGGCCAGTTTATGAAGATAAGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CAA 90 bp ACCAGAGGGAAGAGATGTGGGAGGCAGGTGTTGGTCCCTAAAGATTCTGGAAGATGGATCAATTCATCTTaGAGAACTGGGATTTCATCA +
Preference number: 5 (lower is better)
Translates to: TRGKRCGRQVLVPKDSGRWINSS*RTGISS
Trigger: TGATGAAATCCCAGTTCTCAAAGATGAATTGATCCA...TCTTCCAGAATCTTTAGGGACCAACACCTGCCTCCCACATCTCTTCCCTCTGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CAA 90 bp TTGACTTTATTCTTGACAATGTTCAGGTGGTTTTACAGCAGACTTATGGAAGCAACCTGCTTCGCCATCTaGCACATGTGTGTGACGGAG +
Preference number: 5 (lower is better)
Translates to: LTLFLTMFRWFYSRLMEATCFAI*HMCVTE
Trigger: CTCCGTCACACACATGTGCAAGATGGCGAAGCAGGT...TGCTTCCATAAGTCTGCTGTAAAACCACCTGAACATTGTCAAGAATAAAGTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CAA 90 bp TTTGGTATTTTACAGATTGACCAGTCTGTTTTAGAAGCGCTCCCACTTGATCTCTCTCTGAACCAGTCTTaGAGTGCATCGATGGACTGC +
Preference number: 5 (lower is better)
Translates to: FGILQIDQSVLEALPLDLSLNQS*SASMDC
Trigger: GCAGTCCATCGATGCACTCAAAGACTGGTTCAGAGA...GAGATCAAGTGGGAGCGCTTCTAAAACAGACTGGTCAATCTGTAAAATACCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS CCA 90 bp GGATCATGTTCCAACATCACTGAAGCCTTCATAACGTCCTTTTTATaGACTGGGCCAATGTTAATTCCTGCATATGGCACCTCTGATGTT +
Preference number: 5 (lower is better)
Translates to: GSCSNITEAFITSFL*TGPMLIPAYGTSDV
Trigger: AACATCAGAGGTGCCATATGCAGGAATTAACATTGGCCCAGTCCATAAAAAGGACGTTATGAAGGCTTCAGTGATGTTGGAACATGATCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CAA 90 bp TATGTCCAATACACAAGTGACCATGAAATGTTTCTGAGTGCCCTAATAGGCCTTTTTAACCTCCATGACTaGTGCTCTCAGCTCTTCACA +
Preference number: 5 (lower is better)
Translates to: YVQYTSDHEMFLSALIGLFNLHD*CSQLFT
Trigger: TGTGAAGAGCTGAGAGCACAAGTCATGGAGGTTAAA...AAGGCCTATTAGGGCACTCAGAAACATTTCATGGTCACTTGTGTATTGGACATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CAA 90 bp TTGACTTTATTCTTGACAATGTTCAGGTGGTTTTACAGCAGACTTATGGAAGCATTACTCTGCTCCTTCTaGCCCTTCTCTAGCTCTTCT +
Preference number: 5 (lower is better)
Translates to: LTLFLTMFRWFYSRLMEALLCSF*PFSSSS
Trigger: AGAAGAGCTAGAGAAGGGCAAGAAGGAGCAGAGTAA...TGCTTCCATAAGTCTGCTGTAAAACCACCTGAACATTGTCAAGAATAAAGTCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS GCA 90 bp AGCAGCATTCAAACCCTGCTGTGCAAATTCTACAATAATGGCCTTTaGACGCTCCTCAAATTCATCCTTTGTATTCTTCTTCTGCTTTTT +
Preference number: 5 (lower is better)
Translates to: SSIQTLLCKFYNNGL*TLLKFILCILLLLF
Trigger: AAAAAGCAGAAGAAGAATACAAAGGATGAATTTGAGGAGCGTGCAAAGGCCATTATTGTAGAATTTGCACAGCAGGGTTTGAATGCTGCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CAA 90 bp TTGACTTTATTCTTGACAATGTTCAGGTGGTTTTACAGCAGACTTATGGAAGCATTTTCTTCTTTCCCTTaGACTTCTGAGGCTCCTGCT +
Preference number: 5 (lower is better)
Translates to: LTLFLTMFRWFYSRLMEAFSSFP*TSEAPA
Trigger: AGCAGGAGCCTCAGAAGTCAAAGGGAAAGAAGAAAA...TGCTTCCATAAGTCTGCTGTAAAACCACCTGAACATTGTCAAGAATAAAGTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS TCA 90 bp TCTTCTTCCTCTTCTTCTTCCTCAGGGTTTTCTTCTACTTCTATGTaGATCATATTTCCTTCTTTTTCTCTCTCCTCATCACTGGCCATA +
Preference number: 5 (lower is better)
Translates to: SSSSSSSSGFSSTSM*IIFPSFSLSSSLAI
Trigger: TATGGCCAGTGATGAGGAGAGAGAAAAAGAAGGAAATATGATTCACATAGAAGTAGAAGAAAACCCTGAGGAAGAAGAAGAGGAAGAAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS CCA 90 bp GTTACTGAAAGACTCGTGTCCAGGAGTATCAATAATCAGCATCCCTaGGATTCGGACATTCTCTCTGTCAAAATTTTTAATCATCTTAGT +
Preference number: 5 (lower is better)
Translates to: VTERLVSRSINNQHP*DSDILSVKIFNHLS
Trigger: ACTAAGATGATTAAAAATTTTGACAGAGAGAATGTCCGAATCCCAGGGATGCTGATTATTGATACTCCTGGACACGAGTCTTTCAGTAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CAA 90 bp TATGTCCAATACACAAGTGACCATGAAATGTTTCTGAGTGCCCTAATAGGCCTTTTACTTCTTTTGCTATaGTCTTCATCCTCTTCTGAC +
Preference number: 5 (lower is better)
Translates to: YVQYTSDHEMFLSALIGLLLLLL*SSSSSD
Trigger: GTCAGAAGAGGATGAAGACAATAGCAAAAGAAGTAA...AAGGCCTATTAGGGCACTCAGAAACATTTCATGGTCACTTGTGTATTGGACATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CAA 90 bp TTTGGTATTTTACAGATTGACCAGTCTGTTTTAGAAGCGCTCCCACTTGATCTCCGTTCTTTACTTCTTTaGCTATTGTCTTCATCCTCT +
Preference number: 5 (lower is better)
Translates to: FGILQIDQSVLEALPLDLRSLLL*LLSSSS
Trigger: AGAGGATGAAGACAATAGCAAAAGAAGTAAAGAACG...GAGATCAAGTGGGAGCGCTTCTAAAACAGACTGGTCAATCTGTAAAATACCAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS-3UTR CAA 90 bp TTTGGTATTTTACAGATTGACCAGTCTGTTTTAGAAGCGCTCCCACTTGATCTCATGTCAACAAAATTTTaGCTTGGAACGCACATAGGT +
Preference number: 5 (lower is better)
Translates to: FGILQIDQSVLEALPLDLMSTKF*LGTHIG
Trigger: ACCTATGTGCGTTCCAAGCAAAAATTTTGTTGACAT...GAGATCAAGTGGGAGCGCTTCTAAAACAGACTGGTCAATCTGTAAAATACCAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS GCA 90 bp GATTTGAGAATGTTGATTGATTCAATTGTCTGGGGCTCTAAACCATaGATAATGTCAACAACTAAAATGGCAATGTCACAAAGAGAGCTT +
Preference number: 5 (lower is better)
Translates to: DLRMLIDSIVWGSKP*IMSTTKMAMSQREL
Trigger: AAGCTCTCTTTGTGACATTGCCATTTTAGTTGTTGACATTATGCATGGTTTAGAGCCCCAGACAATTGAATCAATCAACATTCTCAAATC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS GCA 72 bp CTCCAGCCTTCCCTGAGTCCTTCTCATCCGACAGCTTaGAGTCCTCCTCGTCCCCATCGCTGCCTTCACTGT +
Preference number: 6 (lower is better)
Translates to: LQPSLSPSHPTA*SPPRPHRCLHC
Trigger: ACAGTGAAGGCAGCGATGGGGACGAGGAGGACTGCAAGCTGTCGGATGAGAAGGACTCAGGGAAGGCTGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS CAA 72 bp TCTCCAGCCTTCCCTGAGTCCTTCTCATCCGACAGCTaGCAGTCCTCCTCGTCCCCATCGCTGCCTTCACTG +
Preference number: 6 (lower is better)
Translates to: SPAFPESFSSDS*QSSSSPSLPSL
Trigger: CAGTGAAGGCAGCGATGGGGACGAGGAGGACTGCAAGCTGTCGGATGAGAAGGACTCAGGGAAGGCTGGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS CAA 72 bp TCGTCGGAGTCGTACTCGGAGTCTGAGCTAGCGTCTTaGCTGGGCTTCGTGTCTCCAGCCTTCCCTGAGTCC +
Preference number: 6 (lower is better)
Translates to: SSESYSESELAS*LGFVSPAFPES
Trigger: GGACTCAGGGAAGGCTGGAGACACGAAGCCCAGCAAAGACGCTAGCTCAGACTCCGAGTACGACTCCGACGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS TCA 72 bp TCTCTTCCGAGGCAGCTCCTGTGTCAGGAGTCCCTCTaGGTGTCAACACCTCCTCCTCAGGTCTCTTCTGAG +
Preference number: 6 (lower is better)
Translates to: SLPRQLLCQESL*VSTPPPQVSSE
Trigger: CTCAGAAGAGACCTGAGGAGGAGGTGTTGACACTCAGAGGGACTCCTGACACAGGAGCTGCCTCGGAAGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS TCA 72 bp TTTAGTCCGATCGTCGTCGGAGTCGTACTCGGAGTCTaGGCTAGCGTCTTTGCTGGGCTTCGTGTCTCCAGC +
Preference number: 6 (lower is better)
Translates to: FSPIVVGVVLGV*ASVFAGLRVSS
Trigger: GCTGGAGACACGAAGCCCAGCAAAGACGCTAGCTCAGACTCCGAGTACGACTCCGACGACGATCGGACTAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS CCA 72 bp TTGACTGCAGCGGCGTCTCTGTCAGCTCTGATGCCTTaGGCTTCCAGAGACAACTCCTCCAGCTCTCTCAGA +
Preference number: 6 (lower is better)
Translates to: LTAAASLSALMP*ASRDNSSSSLR
Trigger: TCTGAGAGAGCTGGAGGAGTTGTCTCTGGAAGCCCAAGGCATCAGAGCTGACAGAGACGCCGCTGCAGTCAA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS CAA 90 bp TTCTGTAGGCTTGACTGCAGCGGCGTCTCTGTCAGCTCTGATGCCTaGGGCTTCCAGAGACAACTCCTCCAGCTCTCTCAGAATGTCGTT +
Preference number: 6 (lower is better)
Translates to: FCRLDCSGVSVSSDA*GFQRQLLQLSQNVV
Trigger: AACGACATTCTGAGAGAGCTGGAGGAGTTGTCTCTGGAAGCCCAAGGCATCAGAGCTGACAGAGACGCCGCTGCAGTCAAGCCTACAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS GCA 72 bp CTCCTGCTCCTTGGCAGCACCAGCTCCTTCTATTTCTaGAGCCAAGGCGCCCAAATCAGTATCATCCTTGGT +
Preference number: 6 (lower is better)
Translates to: LLLLGSTSSFYF*SQGAQISIILG
Trigger: ACCAAGGATGATACTGATTTGGGCGCCTTGGCTGCAGAAATAGAAGGAGCTGGTGCTGCCAAGGAGCAGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS GCA 72 bp GGCAGATTCTTCTTCATTGTTTTCTGTAGGCTTGACTaGAGCGGCGTCTCTGTCAGCTCTGATGCCTTGGGC +
Preference number: 6 (lower is better)
Translates to: GRFFFIVFCRLD*SGVSVSSDALG
Trigger: GCCCAAGGCATCAGAGCTGACAGAGACGCCGCTGCAGTCAAGCCTACAGAAAACAATGAAGAAGAATCTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS GCA 72 bp AAGGTAGATGAGACTTCCCATGCCATCACCAGTATGTaGAGAGGTAGGTACCAAGGACACGAAAGTGCGGGG +
Preference number: 6 (lower is better)
Translates to: KVDETSHAITSM*RGRYQGHESAG
Trigger: CCCCGCACTTTCGTGTCCTTGGTACCTACCTCTGCACATACTGGTGATGGCATGGGAAGTCTCATCTACCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS GCA 72 bp GCCCATTCCTGGGAGAGCTTTAACCTCCATGACTTGTaGTCTCAGCTCTTCACAGTGTGCAAGCCTCTTGCT +
Preference number: 6 (lower is better)
Translates to: AHSWESFNLHDL*SQLFTVCKPLA
Trigger: AGCAAGAGGCTTGCACACTGTGAAGAGCTGAGAGCACAAGTCATGGAGGTTAAAGCTCTCCCAGGAATGGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS TCA 72 bp TTTGGCAACGAGTCTTTTGATGGCACTTCAACACCCTaGGCTTGGAGGTGTCTAAGGGTCACTTCGGCTCTG +
Preference number: 6 (lower is better)
Translates to: FGNESFDGTSTP*AWRCLRVTSAL
Trigger: CAGAGCCGAAGTGACCCTTAGACACCTCCAAGCTCAGGGTGTTGAAGTGCCATCAAAAGACTCGTTGCCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS CAA 72 bp TGTTCAAGTCGTCGTTTCTCAATCCTCCGTTTCGCTTaGTCGTACGCCCGCTCTTCTTTAGTCCGATCGTCG +
Preference number: 6 (lower is better)
Translates to: CSSRRFSILRFA*SYARSSLVRSS
Trigger: CGACGATCGGACTAAAGAAGAGCGGGCGTACGACAAAGCGAAACGGAGGATTGAGAAACGACGACTTGAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS CAA 90 bp CTCTGGCTCAACAGAAGGTGGCGTCTCTTCCTTTTCTGGTCCTCCTaGGTCCACAGCTTCCACAGGAGCACTTATTTCCAAAGTTTCAGA +
Preference number: 6 (lower is better)
Translates to: LWLNRRWRLFLFWSS*VHSFHRSTYFQSFR
Trigger: TCTGAAACTTTGGAAATAAGTGCTCCTGTGGAAGCTGTGGACCAAGGAGGACCAGAAAAGGAAGAGACGCCACCTTCTGTTGAGCCAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS GCA 72 bp ACTCTTCTGCATTTCGTCTCTGAACCAGTCTTTGAGTaGATCGATGGACTGCCGGCTGATCTTGCTGACAAG +
Preference number: 6 (lower is better)
Translates to: TLLHFVSEPVFE*IDGLPADLADK
Trigger: CTTGTCAGCAAGATCAGCCGGCAGTCCATCGATGCACTCAAAGACTGGTTCAGAGACGAAATGCAGAAGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS CCA 72 bp ACAGAAGGTGGCGTCTCTTCCTTTTCTGGTCCTCCTTaGTCCACAGCTTCCACAGGAGCACTTATTTCCAAA +
Preference number: 6 (lower is better)
Translates to: TEGGVSSFSGPP*STASTGALISK
Trigger: TTTGGAAATAAGTGCTCCTGTGGAAGCTGTGGACCAAGGAGGACCAGAAAAGGAAGAGACGCCACCTTCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS CAA 72 bp AACAGAAGGTGGCGTCTCTTCCTTTTCTGGTCCTCCTaGGTCCACAGCTTCCACAGGAGCACTTATTTCCAA +
Preference number: 6 (lower is better)
Translates to: NRRWRLFLFWSS*VHSFHRSTYFQ
Trigger: TTGGAAATAAGTGCTCCTGTGGAAGCTGTGGACCAAGGAGGACCAGAAAAGGAAGAGACGCCACCTTCTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS CAA 90 bp TCGCGCTCTTTCTTTTCTGCCTTCTTCTGGGCCACCGTCTTAATTTaGAAGGAAGAGTCATCGTCCTCATTCCCACTGTCTACGGTAGGA +
Preference number: 6 (lower is better)
Translates to: SRSFFSAFFWATVLI*KEESSSSFPLSTVG
Trigger: TCCTACCGTAGACAGTGGGAATGAGGACGATGACTCTTCCTTCAAAATTAAGACGGTGGCCCAGAAGAAGGCAGAAAAGAAAGAGCGCGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS GCA 72 bp AACATTTGTGGCACCAATCTGCTGTGTAATACCACCTaGTTCGCCATCTTGCACATGTGTGTGACGGAGCTT +
Preference number: 6 (lower is better)
Translates to: NICGTNLLCNTT*FAILHMCVTEL
Trigger: AAGCTCCGTCACACACATGTGCAAGATGGCGAAGCAGGTGGTATTACACAGCAGATTGGTGCCACAAATGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS GCA 72 bp TCGTCTCTGAACCAGTCTTTGAGTGCATCGATGGACTaGCGGCTGATCTTGCTGACAAGTATATCTGTAGCT +
Preference number: 6 (lower is better)
Translates to: SSLNQSLSASMD*RLILLTSISVA
Trigger: AGCTACAGATATACTTGTCAGCAAGATCAGCCGGCAGTCCATCGATGCACTCAAAGACTGGTTCAGAGACGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS TCA 72 bp TTCTTTTTCTCCTTTTTCTTCTTTCCCTTTGACTTCTaGGGCTCCTGCTCCTTGGCAGCACCAGCTCCTTCT +
Preference number: 6 (lower is better)
Translates to: FFFSFFFFPFDF*GSCSLAAPAPS
Trigger: AGAAGGAGCTGGTGCTGCCAAGGAGCAGGAGCCTCAGAAGTCAAAGGGAAAGAAGAAAAAGGAGAAAAAGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS GCA 72 bp CTTGTGCTCTCAGCTCTTCACAGTGTGCAAGCCTCTTaGTCAACATGGTTTGAGTTAACTCCACAAGAAGGT +
Preference number: 6 (lower is better)
Translates to: LVLSALHSVQAS*STWFELTPQEG
Trigger: ACCTTCTTGTGGAGTTAACTCAAACCATGTTGAGCAAGAGGCTTGCACACTGTGAAGAGCTGAGAGCACAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS CAA 72 bp CTTCATAAACTGGCCTTTTCTTTGGCAACGAGTCTTTaGATGGCACTTCAACACCCTGAGCTTGGAGGTGTC +
Preference number: 6 (lower is better)
Translates to: LHKLAFSLATSL*MALQHPELGGV
Trigger: GACACCTCCAAGCTCAGGGTGTTGAAGTGCCATCAAAAGACTCGTTGCCAAAGAAAAGGCCAGTTTATGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS CAA 72 bp TTTGCTTGGAACGCACATAGGTGTTCCTTGTTTCACTaGACCAGCCTCCACAGTGACCCCTATTACTATTGG +
Preference number: 6 (lower is better)
Translates to: FAWNAHRCSLFH*TSLHSDPYYYW
Trigger: CCAATAGTAATAGGGGTCACTGTGGAGGCTGGTCAAGTGAAACAAGGAACACCTATGTGCGTTCCAAGCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS CAA 90 bp TCTACTCCAGGGACAATGATTGTATCCCCTTCCTTCAAACGTCCATaGATCAATATGACATCTATTGTGGTGCCCATTCCTGGGAGAGCT +
Preference number: 6 (lower is better)
Translates to: STPGTMIVSPSFKRP*INMTSIVVPIPGRA
Trigger: AGCTCTCCCAGGAATGGGCACCACAATAGATGTCATATTGATCAATGGACGTTTGAAGGAAGGGGATACAATCATTGTCCCTGGAGTAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS TCA 72 bp TTCATAAACTGGCCTTTTCTTTGGCAACGAGTCTTTTaGTGGCACTTCAACACCCTGAGCTTGGAGGTGTCT +
Preference number: 6 (lower is better)
Translates to: FINWPFLWQRVF*WHFNTLSLEVS
Trigger: AGACACCTCCAAGCTCAGGGTGTTGAAGTGCCATCAAAAGACTCGTTGCCAAAGAAAAGGCCAGTTTATGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS TCA 72 bp TCAACATGGTTTGAGTTAACTCCACAAGAAGGTAGATaGGACTTCCCATGCCATCACCAGTATGTGCAGAGG +
Preference number: 6 (lower is better)
Translates to: STWFELTPQEGR*DFPCHHQYVQR
Trigger: CCTCTGCACATACTGGTGATGGCATGGGAAGTCTCATCTACCTTCTTGTGGAGTTAACTCAAACCATGTTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS CCA 72 bp CTCTCCTCCTCCTCTTTGAGCTTAGCCAAAGCTTCCTaGATAGCTTTAACAGTAGATTTACTAGGGCCTTTC +
Preference number: 6 (lower is better)
Translates to: LSSSSLSLAKAS*IALTVDLLGPF
Trigger: GAAAGGCCCTAGTAAATCTACTGTTAAAGCTATCCAGGAAGCTTTGGCTAAGCTCAAAGAGGAGGAGGAGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS TCA 72 bp AATTACTGCATACTGGGGATCATGTTCCAACATCACTaGAGCCTTCATAACGTCCTTTTTATGGACTGGGCC +
Preference number: 6 (lower is better)
Translates to: NYCILGIMFQHH*SLHNVLFMDWA
Trigger: GGCCCAGTCCATAAAAAGGACGTTATGAAGGCTTCAGTGATGTTGGAACATGATCCCCAGTATGCAGTAATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS GCA 72 bp TTAATAGCTTCAAGAGGAACATTTGTGGCACCAATCTaGTGTGTAATACCACCTGCTTCGCCATCTTGCACA +
Preference number: 6 (lower is better)
Translates to: LIASRGTFVAPI*CVIPPASPSCT
Trigger: TGTGCAAGATGGCGAAGCAGGTGGTATTACACAGCAGATTGGTGCCACAAATGTTCCTCTTGAAGCTATTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS CCA 72 bp ATTGATCAATATGACATCTATTGTGGTGCCCATTCCTaGGAGAGCTTTAACCTCCATGACTTGTGCTCTCAG +
Preference number: 6 (lower is better)
Translates to: IDQYDIYCGAHS*ESFNLHDLCSQ
Trigger: CTGAGAGCACAAGTCATGGAGGTTAAAGCTCTCCCAGGAATGGGCACCACAATAGATGTCATATTGATCAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS CCA 72 bp TCCAACATCACTGAAGCCTTCATAACGTCCTTTTTATaGACTGGGCCAATGTTAATTCCTGCATATGGCACC +
Preference number: 6 (lower is better)
Translates to: SNITEAFITSFL*TGPMLIPAYGT
Trigger: GGTGCCATATGCAGGAATTAACATTGGCCCAGTCCATAAAAAGGACGTTATGAAGGCTTCAGTGATGTTGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS CCA 72 bp CACTTGACCAGCCTCCACAGTGACCCCTATTACTATTaGATCTCGAGAATTGAAAATGTATTGAGGGAGGAT +
Preference number: 6 (lower is better)
Translates to: HLTSLHSDPYYY*ISRIENVLRED
Trigger: ATCCTCCCTCAATACATTTTCAATTCTCGAGATCCAATAGTAATAGGGGTCACTGTGGAGGCTGGTCAAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS CAA 72 bp GGGACAATGATTGTATCCCCTTCCTTCAAACGTCCATaGATCAATATGACATCTATTGTGGTGCCCATTCCT +
Preference number: 6 (lower is better)
Translates to: GTMIVSPSFKRP*INMTSIVVPIP
Trigger: AGGAATGGGCACCACAATAGATGTCATATTGATCAATGGACGTTTGAAGGAAGGGGATACAATCATTGTCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS GCA 72 bp ATGATTTCAAATACTTTCTTCAGCTCCACAATAAGCTaGCAGTCACTCTTCTGCATTTCGTCTCTGAACCAG +
Preference number: 6 (lower is better)
Translates to: MISNTFFSSTIS*QSLFCISSLNQ
Trigger: CTGGTTCAGAGACGAAATGCAGAAGAGTGACTGGCAGCTTATTGTGGAGCTGAAGAAAGTATTTGAAATCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS GCA 72 bp CAAACCCTGCTGTGCAAATTCTACAATAATGGCCTTTaGACGCTCCTCAAATTCATCCTTTGTATTCTTCTT +
Preference number: 6 (lower is better)
Translates to: QTLLCKFYNNGL*TLLKFILCILL
Trigger: AAGAAGAATACAAAGGATGAATTTGAGGAGCGTGCAAAGGCCATTATTGTAGAATTTGCACAGCAGGGTTTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS CCA 72 bp GCTTGTTACTATCCCAATGTCAACAAAATTTTTGCTTaGAACGCACATAGGTGTTCCTTGTTTCACTTGACC +
Preference number: 6 (lower is better)
Translates to: ACYYPNVNKIFA*NAHRCSLFHLT
Trigger: GGTCAAGTGAAACAAGGAACACCTATGTGCGTTCCAAGCAAAAATTTTGTTGACATTGGGATAGTAACAAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8
CDS CAA 72 bp CCCTATTACTATTGGATCTCGAGAATTGAAAATGTATaGAGGGAGGATTTTCATCTTGCAGGGAAATACTGC +
Preference number: 6 (lower is better)
Translates to: PYYYWISRIENV*REDFHLAGKYC
Trigger: GCAGTATTTCCCTGCAAGATGAAAATCCTCCCTCAATACATTTTCAATTCTCGAGATCCAATAGTAATAGGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027252.8