RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for EIF4ENIF1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020454

Ensembl transcript IDs: ENSMUST00000020734.11, ENSMUST00000110048.8, ENSMUST00000110049.8, ENSMUST00000120721.9, ENSMUST00000125637.8, ENSMUST00000135223.2, ENSMUST00000179770.8

Found 364 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCGCTCCGCCCCGAGGCTaGGTAGAGAGAGGCATGCCA +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALAPPRG*VERGMP
Trigger: TGGCATGCCTCTCTCTACCCAGCCTCGGGGCGGAGC...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCAGCTGGGAGTGCATGTaGGGCATGCCCGACCGGCTG +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALSWECM*GMPDRL
Trigger: CAGCCGGTCGGGCATGCCCCACATGCACTCCCAGCT...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCGGGGAGCTGCTCCTTTaGCTGGTACGATGCTCCAGC +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALGELLL*LVRCSS
Trigger: GCTGGAGCATCGTACCAGCCAAAGGAGCAGCTCCCC...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCGCTCCTGGGCCAGAATaGCTTCCACCTCGTCCTCTT +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALAPGPE*LPPRPL
Trigger: AAGAGGACGAGGTGGAAGTCATTCTGGCCCAGGAGC...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCCTGGCTCATCTGGGCTaGGACAGGACTCATGGGCTT +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALLAHLG*DRTHGL
Trigger: AAGCCCATGAGTCCTGTCTCAGCCCAGATGAGCCAG...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCGTGTGGATCCAAGGCTaGTGGATCTGCTCCCTGACC +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALVWIQG*WICSLT
Trigger: GGTCAGGGAGCAGATCCAGCAGCCTTGGATCCACAC...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCGAGCGCTGTAGCTGCTaGTGCATCACCGCCAAATGC +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALERCSC*CITAKC
Trigger: GCATTTGGCGGTGATGCAGCAGCAGCTACAGCGCTC...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCTCAGCAGAGGGCTCCTaGGCCAGAATGACTTCCACC +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALSAEGS*ARMTST
Trigger: GGTGGAAGTCATTCTGGCCCAGGAGCCCTCTGCTGA...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCGTACGATGCTCCAGCTaGGAGTGCATGTGGGGCATG +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALVRCSS*ECMWGM
Trigger: CATGCCCCACATGCACTCCCAGCTGGAGCATCGTAC...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCCTGAGCCAAACCATTTaGCAAGGCCCACAGGGGAGC +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALLSQTI*QGPQGS
Trigger: GCTCCCCTGTGGGCCTTGCCAAATGGTTTGGCTCAG...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCGAGAAAGCATGCTTGTaGTGGAGGCAGCAGGAGCTG +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALEKACL*WRQQEL
Trigger: CAGCTCCTGCTGCCTCCATCACAAGCATGCTTTCTC...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCCATCTTCCGGATCACTaGGGTAGGGGTGAAGGAAGG +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALHLPDH*GRGEGR
Trigger: CCTTCCTTCACCCCTACCTCAGTGATCCGGAAGATG...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCAAAGGGTACAAGGGTTaGCCCAGGAGTGGGCCAGAT +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALKGYKG*PRSGPD
Trigger: ATCTGGCCCACTCCTGGGTCAACCCTTGTACCCTTT...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCAGGCTGGTAGAAGGGTaGTGTCTGGACTGCAAGGTC +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALRLVEG*CLDCKV
Trigger: GACCTTGCAGTCCAGACAGCACCCTTCTACCAGCCT...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCCTGAACGCTGATAGCTaGTGCCTGGGAACTAGAGCC +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALLNADS*CLGTRA
Trigger: GGCTCTAGTTCCCAGGCAGCAGCTATCAGCGTTCAG...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCCTTTGGCTGGTACGATaGTCCAGCTGGGAGTGCATG +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALLWLVR*SSWECM
Trigger: CATGCACTCCCAGCTGGAGCATCGTACCAGCCAAAG...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCATGGAGGGCAGAGGCTaGTGTAGCACATCTGAGCCA +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALMEGRG*CSTSEP
Trigger: TGGCTCAGATGTGCTACAGCAGCCTCTGCCCTCCAT...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCAGGTGTTCCTGGGACTaGGGATGCCAAGGTAGGTGT +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALRCSWD*GCQGRC
Trigger: ACACCTACCTTGGCATCCCCAGTCCCAGGAACACCT...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCGGGACAAGGGGAACTTaGTGGGTAGGGCGGAGAAAA +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALGTRGT*WVGRRK
Trigger: TTTTCTCCGCCCTACCCACCAAGTTCCCCTTGTCCC...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCAGAAACAGGCTGGCCTaGAATCTCAGCAGGGGCCAA +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALRNRLA*NLSRGQ
Trigger: TTGGCCCCTGCTGAGATTCCAGGCCAGCCTGTTTCT...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCGAGAAAAGGTGTTCCTaGGACTGGGGATGCCAAGGT +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALEKRCS*DWGCQG
Trigger: ACCTTGGCATCCCCAGTCCCAGGAACACCTTTTCTC...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCACAAGGGGAACTTGGTaGGTAGGGCGGAGAAAAGGT +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALTRGTW*VGRRKG
Trigger: ACCTTTTCTCCGCCCTACCCACCAAGTTCCCCTTGT...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCACTGGTGGGTCCAGCTaGAAACCATTCTGGTTCTTC +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALTGGSS*KPFWFF
Trigger: GAAGAACCAGAATGGTTTTCAGCTGGACCCACCAGT...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCTCTATGGTTTCAGACTaGCTGGTGGGTCCAGCTGAA +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALSMVSD*LVGPAE
Trigger: TTCAGCTGGACCCACCAGTCAGTCTGAAACCATAGA...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCTCTGCTGAGGCTGCTTaGGTTCGAAATACCTGTGAC +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALSAEAA*VRNTCD
Trigger: GTCACAGGTATTTCGAACTCAAGCAGCCTCAGCAGA...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCCGAACAATAGGAACATaGGGGACAAGGGGAACTTGG +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALRTIGT*GTRGTW
Trigger: CCAAGTTCCCCTTGTCCCTCATGTTCCTATTGTTCG...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCAGGCATGATGGCCTCTaGTTGGAGTATGGACGTTCT +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALRHDGL*LEYGRS
Trigger: AGAACGTCCATACTCCAAGCAGAGGCCATCATGCCT...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCGTGGATCTGCTATTCTaGGCACCAGAGAAGGTCGAT +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALVDLLF*APEKVD
Trigger: ATCGACCTTCTCTGGTGCGCAGAATAGCAGATCCAC...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCCATTGCACTCCACTATaGCTTCCTTCACAGAGGCAG +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALHCTPL*LPSQRQ
Trigger: CTGCCTCTGTGAAGGAAGGCATAGTGGAGTGCAATG...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCAATTCTCCTGGGGACTaGTCAGGTAGGATGACATCC +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALNSPGD*SGRMTS
Trigger: GGATGTCATCCTACCTGAGCAGTCCCCAGGAGAATT...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCTGGTTTCAGACTGACTaGTGGGTCCAGCTGAAAACC +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALWFQTD*WVQLKT
Trigger: GGTTTTCAGCTGGACCCACCAGTCAGTCTGAAACCA...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCAGCCAGTCAGCTCTATaGTTTCAGACTGACTGGTGG +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALSQSAL*FQTDWW
Trigger: CCACCAGTCAGTCTGAAACCATAGAGCTGACTGGCT...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCGGAAGCACACCAGCTTaGAGCAAACTTGGAAGATGC +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALGSTPA*SKLGRC
Trigger: GCATCTTCCAAGTTTGCTCCAAGCTGGTGTGCTTCC...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCCGACTGACTTTGGGCTaGGTAGGCAAAGTTCCACTT +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALRLTLG*VGKVPL
Trigger: AAGTGGAACTTTGCCTACCCAGCCCAAAGTCAGTCG...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCGCAGGTCCTTATCACTaGGACGGTGATCCTTTTCAA +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALAGPYH*DGDPFQ
Trigger: TTGAAAAGGATCACCGTCTCAGTGATAAGGACCTGC...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCTCCAAAGCAGCTTGCTaGAATTCTAGCTGGCTCATC +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALSKAAC*NSSWLI
Trigger: GATGAGCCAGCTAGAATTGCAGCAAGCTGCTTTGGA...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCGAGGAATTTCCACCATaGATGGGTGCTGGTGACTTT +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALEEFPP*MGAGDF
Trigger: AAAGTCACCAGCACCCATGCATGGTGGAAATTCCTC...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCAGCAAACTTGGAAGATaGTGTGGATGTACCCCTTGG +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALSKLGR*CGCTPW
Trigger: CCAAGGGGTACATCCACAGCATCTTCCAAGTTTGCT...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCGGTTCTGTCCACTTGTaGTTTGCTAAAACCAGGCTG +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALGSVHL*FAKTRL
Trigger: CAGCCTGGTTTTAGCAAACCACAAGTGGACAGAACC...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCGCAGGTTCTCTTCGCTaGTCTTCTGAGTATCCTCTT +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALAGSLR*SSEYPL
Trigger: AAGAGGATACTCAGAAGACCAGCGAAGAGAACCTGC...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCACTTGGAAGATGCTGTaGATGTACCCCTTGGGCTAT +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALTWKML*MYPLGY
Trigger: ATAGCCCAAGGGGTACATCCACAGCATCTTCCAAGT...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCTGCCATGAAGGGAGTTaGATTCTTCATTTGCTGGTC +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALCHEGS*ILHLLV
Trigger: GACCAGCAAATGAAGAATTCAACTCCCTTCATGGCA...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCTCTTCGCTGGTCTTCTaGGTATCCTCTTTACCATCA +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALSSLVF*VSSLPS
Trigger: TGATGGTAAAGAGGATACTCAGAAGACCAGCGAAGA...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCTTTGACATTCGCTGTTaGCTGTTTCTGAGCCCATCT +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALFDIRC*LFLSPS
Trigger: AGATGGGCTCAGAAACAGGCAACAGCGAATGTCAAA...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCTTTCAGACTGACTGGTaGGTCCAGCTGAAAACCATT +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALFQTDW*VQLKTI
Trigger: AATGGTTTTCAGCTGGACCCACCAGTCAGTCTGAAA...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCAATTTCCACCATGCATaGGTGCTGGTGACTTTGACA +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALNFHHA*VLVTLT
Trigger: TGTCAAAGTCACCAGCACCCATGCATGGTGGAAATT...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGCAGACTTTCCACTGGTaGGCTCCGCCCCGAGGCTGG +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRQTFHW*APPRGW
Trigger: CCAGCCTCGGGGCGGAGCTCACCAGTGGAAAGTCTG...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCTTCTTCCTCAGTGTATaGATCGTTTCTTCTACGCTC +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALFFLSV*IVSSTL
Trigger: GAGCGTAGAAGAAACGATTCATACACTGAGGAAGAA...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCTATCTCCATCTTTCTTaGGCTGTCTATTGCTACTCG +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALYLHLS*AVYCYS
Trigger: CGAGTAGCAATAGACAGCTCAAGAAAGATGGAGATA...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCGTTGAATTCTTCATTTaGTGGTCCACTTTCAAGCCC +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALVEFFI*WSTFKP
Trigger: GGGCTTGAAAGTGGACCAGCAAATGAAGAATTCAAC...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCCCTTGGTTTTCTCTCTaGTTTCATACATCTTCCGGA +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALPWFSL*FHTSSG
Trigger: TCCGGAAGATGTATGAAAGCAGAGAGAAAACCAAGG...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGCTCCGCCCCGAGGCTaGGTAGAGAGAGGCATGCCA +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRAPPRG*VERGMP
Trigger: TGGCATGCCTCTCTCTACCCAGCCTCGGGGCGGAGC...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCCATCGAAGCCAAGCATaGCACCTTATCAAGGTTAAA +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALHRSQA*HLIKVK
Trigger: TTTAACCTTGATAAGGTGCCATGCTTGGCTTCGATG...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCGTGCCATTTCCTCCTTaGTTTTCTCTCTGCTTTCAT +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALVPFPP*FSLCFH
Trigger: ATGAAAGCAGAGAGAAAACCAAGGAGGAAATGGCAC...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCTATTGGGTATGGGATTaGATGACAGCAGGTTCTCTT +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALYWVWD*MTAGSL
Trigger: AAGAGAACCTGCTGTCATCCAATCCCATACCCAATA...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGAGCTGGGAGTGCATGTaGGGCATGCCCGACCGGCTG +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRSWECM*GMPDRL
Trigger: CAGCCGGTCGGGCATGCCCCACATGCACTCCCAGCT...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCCTTTTTCTGCCTTTGTaGTCCTCCTCTAGAATCTTA +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALLFLPL*SSSRIL
Trigger: TAAGATTCTAGAGGAGGATCACAAAGGCAGAAAAAG...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCAGGTGTTTTCCTTCCTaGTGTTTTAGGTCGATAATC +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALRCFPS*CFRSII
Trigger: GATTATCGACCTAAAACAGCAGGAAGGAAAACACCT...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCAGCTCCGCCCCGAGGCTaGGTAGAGAGAGGCATGCCA +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPAPPRG*VERGMP
Trigger: TGGCATGCCTCTCTCTACCCAGCCTCGGGGCGGAGC...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCAAGCTGGGAGTGCATGTaGGGCATGCCCGACCGGCTG +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPSWECM*GMPDRL
Trigger: CAGCCGGTCGGGCATGCCCCACATGCACTCCCAGCT...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGGCCCACAGGGGAGCTaGTCCTTTGGCTGGTACGAT +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRGPQGS*SFGWYD
Trigger: ATCGTACCAGCCAAAGGAGCAGCTCCCCTGTGGGCC...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCACTTTATTTTCAGCATaGTCTTCCGATGGTATAGGA +
Preference number: 4 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALTLFSA*SSDGIG
Trigger: TCCTATACCATCGGAAGACCATGCTGAAAATAAAGT...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGGGGAGCTGCTCCTTTaGCTGGTACGATGCTCCAGC +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRGELLL*LVRCSS
Trigger: GCTGGAGCATCGTACCAGCCAAAGGAGCAGCTCCCC...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
52% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGCTCCTGGGCCAGAATaGCTTCCACCTCGTCCTCTT +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRAPGPE*LPPRPL
Trigger: AAGAGGACGAGGTGGAAGTCATTCTGGCCCAGGAGC...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGCTGGCTCATCTGGGCTaGGACAGGACTCATGGGCTT +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRLAHLG*DRTHGL
Trigger: AAGCCCATGAGTCCTGTCTCAGCCCAGATGAGCCAG...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGAGCGCTGTAGCTGCTaGTGCATCACCGCCAAATGC +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRERCSC*CITAKC
Trigger: GCATTTGGCGGTGATGCAGCAGCAGCTACAGCGCTC...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCAGGCCCACAGGGGAGCTaGTCCTTTGGCTGGTACGAT +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPGPQGS*SFGWYD
Trigger: ATCGTACCAGCCAAAGGAGCAGCTCCCCTGTGGGCC...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCATGGATCCAAGGCTGCTaGATCTGCTCCCTGACCGGC +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPWIQGC*ICSLTG
Trigger: GCCGGTCAGGGAGCAGATCCAGCAGCCTTGGATCCA...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTACGATGCTCCAGCTaGGAGTGCATGTGGGGCATG +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRVRCSS*ECMWGM
Trigger: CATGCCCCACATGCACTCCCAGCTGGAGCATCGTAC...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGCAGACTTTCCACTGGTaGGCTCCGCCCCGAGGCTGG +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMQTFHW*APPRGW
Trigger: CCAGCCTCGGGGCGGAGCTCACCAGTGGAAAGTCTG...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCAGCTCCTGGGCCAGAATaGCTTCCACCTCGTCCTCTT +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPAPGPE*LPPRPL
Trigger: AAGAGGACGAGGTGGAAGTCATTCTGGCCCAGGAGC...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCACTGGCTCATCTGGGCTaGGACAGGACTCATGGGCTT +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPLAHLG*DRTHGL
Trigger: AAGCCCATGAGTCCTGTCTCAGCCCAGATGAGCCAG...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGAGAAAGCATGCTTGTaGTGGAGGCAGCAGGAGCTG +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTREKACL*WRQQEL
Trigger: CAGCTCCTGCTGCCTCCATCACAAGCATGCTTTCTC...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGCATCTTCCGGATCACTaGGGTAGGGGTGAAGGAAGG +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRHLPDH*GRGEGR
Trigger: CCTTCCTTCACCCCTACCTCAGTGATCCGGAAGATG...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCAGTGTGGATCCAAGGCTaGTGGATCTGCTCCCTGACC +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPVWIQG*WICSLT
Trigger: GGTCAGGGAGCAGATCCAGCAGCCTTGGATCCACAC...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGAGGCTGGTAGAAGGGTaGTGTCTGGACTGCAAGGTC +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRRLVEG*CLDCKV
Trigger: GACCTTGCAGTCCAGACAGCACCCTTCTACCAGCCT...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCAGAGCGCTGTAGCTGCTaGTGCATCACCGCCAAATGC +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPERCSC*CITAKC
Trigger: GCATTTGGCGGTGATGCAGCAGCAGCTACAGCGCTC...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGACTGAGCGCTGTAGCTaGTGCTGCATCACCGCCAAA +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRTERCS*CCITAK
Trigger: TTTGGCGGTGATGCAGCAGCAGCTACAGCGCTCAGT...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGATGGAGGGCAGAGGCTaGTGTAGCACATCTGAGCCA +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRMEGRG*CSTSEP
Trigger: TGGCTCAGATGTGCTACAGCAGCCTCTGCCCTCCAT...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGGCTCCGCCCCGAGGCTaGGTAGAGAGAGGCATGCCA +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMAPPRG*VERGMP
Trigger: TGGCATGCCTCTCTCTACCCAGCCTCGGGGCGGAGC...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCATCAGCAGAGGGCTCCTaGGCCAGAATGACTTCCACC +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPSAEGS*ARMTST
Trigger: GGTGGAAGTCATTCTGGCCCAGGAGCCCTCTGCTGA...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGCTGAGACAGGACTCATaGGCTTGCGCATGCCTTGGA +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRLRQDS*ACACLG
Trigger: TCCAAGGCATGCGCAAGCCCATGAGTCCTGTCTCAG...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGAGGTGTTCCTGGGACTaGGGATGCCAAGGTAGGTGT +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRRCSWD*GCQGRC
Trigger: ACACCTACCTTGGCATCCCCAGTCCCAGGAACACCT...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGGGACAAGGGGAACTTaGTGGGTAGGGCGGAGAAAA +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRGTRGT*WVGRRK
Trigger: TTTTCTCCGCCCTACCCACCAAGTTCCCCTTGTCCC...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGCTGGGAGTGCATGTaGGGCATGCCCGACCGGCTG +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMSWECM*GMPDRL
Trigger: CAGCCGGTCGGGCATGCCCCACATGCACTCCCAGCT...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCACTGAGCCAAACCATTTaGCAAGGCCCACAGGGGAGC +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPLSQTI*QGPQGS
Trigger: GCTCCCCTGTGGGCCTTGCCAAATGGTTTGGCTCAG...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGAGAAACAGGCTGGCCTaGAATCTCAGCAGGGGCCAA +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRRNRLA*NLSRGQ
Trigger: TTGGCCCCTGCTGAGATTCCAGGCCAGCCTGTTTCT...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCAAAAGGGTACAAGGGTTaGCCCAGGAGTGGGCCAGAT +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPKGYKG*PRSGPD
Trigger: ATCTGGCCCACTCCTGGGTCAACCCTTGTACCCTTT...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGCAGGACTCATGGGCTTaGGCATGCCTTGGAATGGAT +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRQDSWA*ACLGMD
Trigger: ATCCATTCCAAGGCATGCGCAAGCCCATGAGTCCTG...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCAAGGCTGGTAGAAGGGTaGTGTCTGGACTGCAAGGTC +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPRLVEG*CLDCKV
Trigger: GACCTTGCAGTCCAGACAGCACCCTTCTACCAGCCT...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGTCCTGGGACTGGGGATaGCAAGGTAGGTGTTTTCCT +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRSWDWG*QGRCFP
Trigger: AGGAAAACACCTACCTTGGCATCCCCAGTCCCAGGA...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCAACTGAGCGCTGTAGCTaGTGCTGCATCACCGCCAAA +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPTERCS*CCITAK
Trigger: TTTGGCGGTGATGCAGCAGCAGCTACAGCGCTCAGT...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCACTAGAGCCTGGAGGATaGAGAACTGAGCGCTGTAGC +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPLEPGG*RTERCS
Trigger: GCTACAGCGCTCAGTTCTGCATCCTCCAGGCTCTAG...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCACTGAACGCTGATAGCTaGTGCCTGGGAACTAGAGCC +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPLNADS*CLGTRA
Trigger: GGCTCTAGTTCCCAGGCAGCAGCTATCAGCGTTCAG...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCACTTTGGCTGGTACGATaGTCCAGCTGGGAGTGCATG +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPLWLVR*SSWECM
Trigger: CATGCACTCCCAGCTGGAGCATCGTACCAGCCAAAG...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCACTGAGACAGGACTCATaGGCTTGCGCATGCCTTGGA +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPLRQDS*ACACLG
Trigger: TCCAAGGCATGCGCAAGCCCATGAGTCCTGTCTCAG...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCAAGGTGTTCCTGGGACTaGGGATGCCAAGGTAGGTGT +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPRCSWD*GCQGRC
Trigger: ACACCTACCTTGGCATCCCCAGTCCCAGGAACACCT...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGAGAAAAGGTGTTCCTaGGACTGGGGATGCCAAGGT +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTREKRCS*DWGCQG
Trigger: ACCTTGGCATCCCCAGTCCCAGGAACACCTTTTCTC...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGACAAGGGGAACTTGGTaGGTAGGGCGGAGAAAAGGT +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRTRGTW*VGRRKG
Trigger: ACCTTTTCTCCGCCCTACCCACCAAGTTCCCCTTGT...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCAAGAAACAGGCTGGCCTaGAATCTCAGCAGGGGCCAA +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPRNRLA*NLSRGQ
Trigger: TTGGCCCCTGCTGAGATTCCAGGCCAGCCTGTTTCT...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGACTGGTGGGTCCAGCTaGAAACCATTCTGGTTCTTC +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRTGGSS*KPFWFF
Trigger: GAAGAACCAGAATGGTTTTCAGCTGGACCCACCAGT...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGTCTATGGTTTCAGACTaGCTGGTGGGTCCAGCTGAA +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRSMVSD*LVGPAE
Trigger: TTCAGCTGGACCCACCAGTCAGTCTGAAACCATAGA...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGACTGCTCAGGTAGGATaGCATCCCTTGGAACTTCCT +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRTAQVG*HPLELP
Trigger: AGGAAGTTCCAAGGGATGTCATCCTACCTGAGCAGT...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGTCTGCTGAGGCTGCTTaGGTTCGAAATACCTGTGAC +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRSAEAA*VRNTCD
Trigger: GTCACAGGTATTTCGAACTCAAGCAGCCTCAGCAGA...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGCGAACAATAGGAACATaGGGGACAAGGGGAACTTGG +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRRTIGT*GTRGTW
Trigger: CCAAGTTCCCCTTGTCCCTCATGTTCCTATTGTTCG...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGAGGCATGATGGCCTCTaGTTGGAGTATGGACGTTCT +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRRHDGL*LEYGRS
Trigger: AGAACGTCCATACTCCAAGCAGAGGCCATCATGCCT...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGAATTCTCCTGGGGACTaGTCAGGTAGGATGACATCC +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRNSPGD*SGRMTS
Trigger: GGATGTCATCCTACCTGAGCAGTCCCCAGGAGAATT...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGTCATGGGCTTGCGCATaGCTTGGAATGGATCTCCAA +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRSWACA*LGMDLQ
Trigger: TTGGAGATCCATTCCAAGGCATGCGCAAGCCCATGA...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCACAGGACTCATGGGCTTaGGCATGCCTTGGAATGGAT +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPQDSWA*ACLGMD
Trigger: ATCCATTCCAAGGCATGCGCAAGCCCATGAGTCCTG...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCATCCTGGGACTGGGGATaGCAAGGTAGGTGTTTTCCT +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPSWDWG*QGRCFP
Trigger: AGGAAAACACCTACCTTGGCATCCCCAGTCCCAGGA...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGGGCCCACAGGGGAGCTaGTCCTTTGGCTGGTACGAT +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMGPQGS*SFGWYD
Trigger: ATCGTACCAGCCAAAGGAGCAGCTCCCCTGTGGGCC...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGCTATGCCTGCTATTCTaGGCACCAGAGAAGGTCGAT +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRLCLLF*APEKVD
Trigger: ATCGACCTTCTCTGGTGCGCAGAATAGCAGGCATAG...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120721.9
CDS-3UTR CCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCAACAGCAGCTGTCACATaGCAGCCACCTCCAAAGCTT +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPTAAVT*QPPPKL
Trigger: AAGCTTTGGAGGTGGCTGCCATGTGACAGCTGCTGT...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGTGGTTTCAGACTGACTaGTGGGTCCAGCTGAAAACC +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRWFQTD*WVQLKT
Trigger: GGTTTTCAGCTGGACCCACCAGTCAGTCTGAAACCA...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGAGCCAGTCAGCTCTATaGTTTCAGACTGACTGGTGG +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRSQSAL*FQTDWW
Trigger: CCACCAGTCAGTCTGAAACCATAGAGCTGACTGGCT...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGTGGATCCAAGGCTGCTaGATCTGCTCCCTGACCGGC +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMWIQGC*ICSLTG
Trigger: GCCGGTCAGGGAGCAGATCCAGCAGCCTTGGATCCA...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGGCTTGCGCATGCCTTaGAATGGATCTCCAAGTAGT +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRGLRMP*NGSPSS
Trigger: ACTACTTGGAGATCCATTCCAAGGCATGCGCAAGCC...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGCAGGTCCTTATCACTaGGACGGTGATCCTTTTCAA +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRAGPYH*DGDPFQ
Trigger: TTGAAAAGGATCACCGTCTCAGTGATAAGGACCTGC...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGGCTCCTGGGCCAGAATaGCTTCCACCTCGTCCTCTT +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMAPGPE*LPPRPL
Trigger: AAGAGGACGAGGTGGAAGTCATTCTGGCCCAGGAGC...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCAACTGCTCAGGTAGGATaGCATCCCTTGGAACTTCCT +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPTAQVG*HPLELP
Trigger: AGGAAGTTCCAAGGGATGTCATCCTACCTGAGCAGT...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCATCTGCTGAGGCTGCTTaGGTTCGAAATACCTGTGAC +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPSAEAA*VRNTCD
Trigger: GTCACAGGTATTTCGAACTCAAGCAGCCTCAGCAGA...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGCTGGCTCATCTGGGCTaGGACAGGACTCATGGGCTT +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMLAHLG*DRTHGL
Trigger: AAGCCCATGAGTCCTGTCTCAGCCCAGATGAGCCAG...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCACGAACAATAGGAACATaGGGGACAAGGGGAACTTGG +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPRTIGT*GTRGTW
Trigger: CCAAGTTCCCCTTGTCCCTCATGTTCCTATTGTTCG...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCAAGGCATGATGGCCTCTaGTTGGAGTATGGACGTTCT +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPRHDGL*LEYGRS
Trigger: AGAACGTCCATACTCCAAGCAGAGGCCATCATGCCT...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCACATTGCACTCCACTATaGCTTCCTTCACAGAGGCAG +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPHCTPL*LPSQRQ
Trigger: CTGCCTCTGTGAAGGAAGGCATAGTGGAGTGCAATG...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGGTGTGGATCCAAGGCTaGTGGATCTGCTCCCTGACC +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMVWIQG*WICSLT
Trigger: GGTCAGGGAGCAGATCCAGCAGCCTTGGATCCACAC...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCATCATGGGCTTGCGCATaGCTTGGAATGGATCTCCAA +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPSWACA*LGMDLQ
Trigger: TTGGAGATCCATTCCAAGGCATGCGCAAGCCCATGA...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGTCCAAAGCAGCTTGCTaGAATTCTAGCTGGCTCATC +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRSKAAC*NSSWLI
Trigger: GATGAGCCAGCTAGAATTGCAGCAAGCTGCTTTGGA...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGAGCAAACTTGGAAGATaGTGTGGATGTACCCCTTGG +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRSKLGR*CGCTPW
Trigger: CCAAGGGGTACATCCACAGCATCTTCCAAGTTTGCT...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCATGGTTTCAGACTGACTaGTGGGTCCAGCTGAAAACC +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPWFQTD*WVQLKT
Trigger: GGTTTTCAGCTGGACCCACCAGTCAGTCTGAAACCA...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCAAGCCAGTCAGCTCTATaGTTTCAGACTGACTGGTGG +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPSQSAL*FQTDWW
Trigger: CCACCAGTCAGTCTGAAACCATAGAGCTGACTGGCT...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGTCAGCAGAGGGCTCCTaGGCCAGAATGACTTCCACC +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMSAEGS*ARMTST
Trigger: GGTGGAAGTCATTCTGGCCCAGGAGCCCTCTGCTGA...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCAGGCTTGCGCATGCCTTaGAATGGATCTCCAAGTAGT +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPGLRMP*NGSPSS
Trigger: ACTACTTGGAGATCCATTCCAAGGCATGCGCAAGCC...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCAGGAAGCACACCAGCTTaGAGCAAACTTGGAAGATGC +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPGSTPA*SKLGRC
Trigger: GCATCTTCCAAGTTTGCTCCAAGCTGGTGTGCTTCC...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGGTACGATGCTCCAGCTaGGAGTGCATGTGGGGCATG +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMVRCSS*ECMWGM
Trigger: CATGCCCCACATGCACTCCCAGCTGGAGCATCGTAC...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGCTGAGCCAAACCATTTaGCAAGGCCCACAGGGGAGC +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMLSQTI*QGPQGS
Trigger: GCTCCCCTGTGGGCCTTGCCAAATGGTTTGGCTCAG...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGTTCGTCTCTGTGGGCTaGGAACAACATCTAAGTCAT +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRFVSVG*EQHLSH
Trigger: ATGACTTAGATGTTGTTCTCAGCCCACAGAGACGAA...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCAGCAGGTCCTTATCACTaGGACGGTGATCCTTTTCAA +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPAGPYH*DGDPFQ
Trigger: TTGAAAAGGATCACCGTCTCAGTGATAAGGACCTGC...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGTGCCATGAAGGGAGTTaGATTCTTCATTTGCTGGTC +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRCHEGS*ILHLLV
Trigger: GACCAGCAAATGAAGAATTCAACTCCCTTCATGGCA...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGGAGAAAGCATGCTTGTaGTGGAGGCAGCAGGAGCTG +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMEKACL*WRQQEL
Trigger: CAGCTCCTGCTGCCTCCATCACAAGCATGCTTTCTC...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGCATCTTCCGGATCACTaGGGTAGGGGTGAAGGAAGG +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMHLPDH*GRGEGR
Trigger: CCTTCCTTCACCCCTACCTCAGTGATCCGGAAGATG...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGTCTTCGCTGGTCTTCTaGGTATCCTCTTTACCATCA +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRSSLVF*VSSLPS
Trigger: TGATGGTAAAGAGGATACTCAGAAGACCAGCGAAGA...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAAAGGGTACAAGGGTTaGCCCAGGAGTGGGCCAGAT +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMKGYKG*PRSGPD
Trigger: ATCTGGCCCACTCCTGGGTCAACCCTTGTACCCTTT...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCATCCAAAGCAGCTTGCTaGAATTCTAGCTGGCTCATC +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPSKAAC*NSSWLI
Trigger: GATGAGCCAGCTAGAATTGCAGCAAGCTGCTTTGGA...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGGCTGGTAGAAGGGTaGTGTCTGGACTGCAAGGTC +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMRLVEG*CLDCKV
Trigger: GACCTTGCAGTCCAGACAGCACCCTTCTACCAGCCT...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGTTTGACATTCGCTGTTaGCTGTTTCTGAGCCCATCT +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRFDIRC*LFLSPS
Trigger: AGATGGGCTCAGAAACAGGCAACAGCGAATGTCAAA...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCAGAGGAATTTCCACCATaGATGGGTGCTGGTGACTTT +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPEEFPP*MGAGDF
Trigger: AAAGTCACCAGCACCCATGCATGGTGGAAATTCCTC...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCAAGCAAACTTGGAAGATaGTGTGGATGTACCCCTTGG +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPSKLGR*CGCTPW
Trigger: CCAAGGGGTACATCCACAGCATCTTCCAAGTTTGCT...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGACTGAGCGCTGTAGCTaGTGCTGCATCACCGCCAAA +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMTERCS*CCITAK
Trigger: TTTGGCGGTGATGCAGCAGCAGCTACAGCGCTCAGT...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGCTAGAGCCTGGAGGATaGAGAACTGAGCGCTGTAGC +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMLEPGG*RTERCS
Trigger: GCTACAGCGCTCAGTTCTGCATCCTCCAGGCTCTAG...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGCTGAACGCTGATAGCTaGTGCCTGGGAACTAGAGCC +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMLNADS*CLGTRA
Trigger: GGCTCTAGTTCCCAGGCAGCAGCTATCAGCGTTCAG...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGCTTTGGCTGGTACGATaGTCCAGCTGGGAGTGCATG +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMLWLVR*SSWECM
Trigger: CATGCACTCCCAGCTGGAGCATCGTACCAGCCAAAG...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGATGGAGGGCAGAGGCTaGTGTAGCACATCTGAGCCA +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMMEGRG*CSTSEP
Trigger: TGGCTCAGATGTGCTACAGCAGCCTCTGCCCTCCAT...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGCAGCCACCCCTCCATTaGACTCCACTATGCCTGCTA +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMQPPLH*TPLCLL
Trigger: TAGCAGGCATAGTGGAGTGCAATGGAGGGGTGGCTG...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120721.9
CDS-3UTR CCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGTTTCAGACTGACTGGTaGGTCCAGCTGAAAACCATT +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRFQTDW*VQLKTI
Trigger: AATGGTTTTCAGCTGGACCCACCAGTCAGTCTGAAA...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCATCACTGACTTTGGGCTaGGTAGGCAAAGTTCCACTT +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPSLTLG*VGKVPL
Trigger: AAGTGGAACTTTGCCTACCCAGCCCAAAGTCAGTGA...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
CDS-3UTR CCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGCTGAGACAGGACTCATaGGCTTGCGCATGCCTTGGA +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMLRQDS*ACACLG
Trigger: TCCAAGGCATGCGCAAGCCCATGAGTCCTGTCTCAG...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCAGGTTCTGTCCACTTGTaGTTTGCTAAAACCAGGCTG +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPGSVHL*FAKTRL
Trigger: CAGCCTGGTTTTAGCAAACCACAAGTGGACAGAACC...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCAGCAGGTTCTCTTCGCTaGTCTTCTGAGTATCCTCTT +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPAGSLR*SSEYPL
Trigger: AAGAGGATACTCAGAAGACCAGCGAAGAGAACCTGC...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGGTGTTCCTGGGACTaGGGATGCCAAGGTAGGTGT +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMRCSWD*GCQGRC
Trigger: ACACCTACCTTGGCATCCCCAGTCCCAGGAACACCT...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGGGGACAAGGGGAACTTaGTGGGTAGGGCGGAGAAAA +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMGTRGT*WVGRRK
Trigger: TTTTCTCCGCCCTACCCACCAAGTTCCCCTTGTCCC...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCAACTTGGAAGATGCTGTaGATGTACCCCTTGGGCTAT +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPTWKML*MYPLGY
Trigger: ATAGCCCAAGGGGTACATCCACAGCATCTTCCAAGT...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCATTCGTCTCTGTGGGCTaGGAACAACATCTAAGTCAT +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPFVSVG*EQHLSH
Trigger: ATGACTTAGATGTTGTTCTCAGCCCACAGAGACGAA...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCATGCCATGAAGGGAGTTaGATTCTTCATTTGCTGGTC +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPCHEGS*ILHLLV
Trigger: GACCAGCAAATGAAGAATTCAACTCCCTTCATGGCA...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGTATCTCCATCTTTCTTaGGCTGTCTATTGCTACTCG +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRYLHLS*AVYCYS
Trigger: CGAGTAGCAATAGACAGCTCAAGAAAGATGGAGATA...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCATCTTCGCTGGTCTTCTaGGTATCCTCTTTACCATCA +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPSSLVF*VSSLPS
Trigger: TGATGGTAAAGAGGATACTCAGAAGACCAGCGAAGA...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGCAGGACTCATGGGCTTaGGCATGCCTTGGAATGGAT +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMQDSWA*ACLGMD
Trigger: ATCCATTCCAAGGCATGCGCAAGCCCATGAGTCCTG...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGCCTTGGTTTTCTCTCTaGTTTCATACATCTTCCGGA +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRPWFSL*FHTSSG
Trigger: TCCGGAAGATGTATGAAAGCAGAGAGAAAACCAAGG...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGTCCTGGGACTGGGGATaGCAAGGTAGGTGTTTTCCT +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMSWDWG*QGRCFP
Trigger: AGGAAAACACCTACCTTGGCATCCCCAGTCCCAGGA...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCATTTCAGACTGACTGGTaGGTCCAGCTGAAAACCATT +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPFQTDW*VQLKTI
Trigger: AATGGTTTTCAGCTGGACCCACCAGTCAGTCTGAAA...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCAAATTTCCACCATGCATaGGTGCTGGTGACTTTGACA +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPNFHHA*VLVTLT
Trigger: TGTCAAAGTCACCAGCACCCATGCATGGTGGAAATT...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGCCATTTCCTCCTTaGTTTTCTCTCTGCTTTCAT +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRVPFPP*FSLCFH
Trigger: ATGAAAGCAGAGAGAAAACCAAGGAGGAAATGGCAC...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGTATTGGGTATGGGATTaGATGACAGCAGGTTCTCTT +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRYWVWD*MTAGSL
Trigger: AAGAGAACCTGCTGTCATCCAATCCCATACCCAATA...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGACAAGGGGAACTTGGTaGGTAGGGCGGAGAAAAGGT +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMTRGTW*VGRRKG
Trigger: ACCTTTTCTCCGCCCTACCCACCAAGTTCCCCTTGT...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCATTCTTCCTCAGTGTATaGATCGTTTCTTCTACGCTC +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPFFLSV*IVSSTL
Trigger: GAGCGTAGAAGAAACGATTCATACACTGAGGAAGAA...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGACTGGTGGGTCCAGCTaGAAACCATTCTGGTTCTTC +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMTGGSS*KPFWFF
Trigger: GAAGAACCAGAATGGTTTTCAGCTGGACCCACCAGT...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGCTTTTTCTGCCTTTGTaGTCCTCCTCTAGAATCTTA +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRLFLPL*SSSRIL
Trigger: TAAGATTCTAGAGGAGGATCACAAAGGCAGAAAAAG...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGACTGCTCAGGTAGGATaGCATCCCTTGGAACTTCCT +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMTAQVG*HPLELP
Trigger: AGGAAGTTCCAAGGGATGTCATCCTACCTGAGCAGT...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGTGTTCACTAGCTTGTTaGATGCAGTCATATCTCCAT +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRCSLAC*MQSYLH
Trigger: ATGGAGATATGACTGCATTCAACAAGCTAGTGAACA...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGTCTGCTGAGGCTGCTTaGGTTCGAAATACCTGTGAC +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMSAEAA*VRNTCD
Trigger: GTCACAGGTATTTCGAACTCAAGCAGCCTCAGCAGA...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGGTGGATCTGCTATTCTaGGCACCAGAGAAGGTCGAT +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMVDLLF*APEKVD
Trigger: ATCGACCTTCTCTGGTGCGCAGAATAGCAGATCCAC...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGCATTGCACTCCACTATaGCTTCCTTCACAGAGGCAG +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMHCTPL*LPSQRQ
Trigger: CTGCCTCTGTGAAGGAAGGCATAGTGGAGTGCAATG...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAATTCTCCTGGGGACTaGTCAGGTAGGATGACATCC +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMNSPGD*SGRMTS
Trigger: GGATGTCATCCTACCTGAGCAGTCCCCAGGAGAATT...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGTCATGGGCTTGCGCATaGCTTGGAATGGATCTCCAA +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMSWACA*LGMDLQ
Trigger: TTGGAGATCCATTCCAAGGCATGCGCAAGCCCATGA...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGAGGTGTTTTCCTTCCTaGTGTTTTAGGTCGATAATC +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRRCFPS*CFRSII
Trigger: GATTATCGACCTAAAACAGCAGGAAGGAAAACACCT...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGCATTGCACTCCACTATaGCTGCTATTCTGCGCACCA +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMHCTPL*LLFCAP
Trigger: TGGTGCGCAGAATAGCAGGCATAGTGGAGTGCAATG...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120721.9
CDS-3UTR CCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGGGCTTGCGCATGCCTTaGAATGGATCTCCAAGTAGT +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMGLRMP*NGSPSS
Trigger: ACTACTTGGAGATCCATTCCAAGGCATGCGCAAGCC...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCAGTGCCATTTCCTCCTTaGTTTTCTCTCTGCTTTCAT +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPVPFPP*FSLCFH
Trigger: ATGAAAGCAGAGAGAAAACCAAGGAGGAAATGGCAC...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCATATTGGGTATGGGATTaGATGACAGCAGGTTCTCTT +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPYWVWD*MTAGSL
Trigger: AAGAGAACCTGCTGTCATCCAATCCCATACCCAATA...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGGGAAGCACACCAGCTTaGAGCAAACTTGGAAGATGC +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMGSTPA*SKLGRC
Trigger: GCATCTTCCAAGTTTGCTCCAAGCTGGTGTGCTTCC...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGCGACTGACTTTGGGCTaGGTAGGCAAAGTTCCACTT +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMRLTLG*VGKVPL
Trigger: AAGTGGAACTTTGCCTACCCAGCCCAAAGTCAGTCG...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGGCAGGTCCTTATCACTaGGACGGTGATCCTTTTCAA +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMAGPYH*DGDPFQ
Trigger: TTGAAAAGGATCACCGTCTCAGTGATAAGGACCTGC...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCACTTTTTCTGCCTTTGTaGTCCTCCTCTAGAATCTTA +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPLFLPL*SSSRIL
Trigger: TAAGATTCTAGAGGAGGATCACAAAGGCAGAAAAAG...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCATGTTCACTAGCTTGTTaGATGCAGTCATATCTCCAT +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPCSLAC*MQSYLH
Trigger: ATGGAGATATGACTGCATTCAACAAGCTAGTGAACA...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGTCCAAAGCAGCTTGCTaGAATTCTAGCTGGCTCATC +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMSKAAC*NSSWLI
Trigger: GATGAGCCAGCTAGAATTGCAGCAAGCTGCTTTGGA...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGGAGGAATTTCCACCATaGATGGGTGCTGGTGACTTT +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMEEFPP*MGAGDF
Trigger: AAAGTCACCAGCACCCATGCATGGTGGAAATTCCTC...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCAAGGTGTTTTCCTTCCTaGTGTTTTAGGTCGATAATC +
Preference number: 4 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPRCFPS*CFRSII
Trigger: GATTATCGACCTAAAACAGCAGGAAGGAAAACACCT...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGCAAACTTGGAAGATaGTGTGGATGTACCCCTTGG +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMSKLGR*CGCTPW
Trigger: CCAAGGGGTACATCCACAGCATCTTCCAAGTTTGCT...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGAGCATGGTCTTCCGATaGTATAGGAGCAAAATAATT +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRSMVFR*YRSKII
Trigger: AATTATTTTGCTCCTATACCATCGGAAGACCATGCT...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGACTTTATTTTCAGCATaGTCTTCCGATGGTATAGGA +
Preference number: 4 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRTLFSA*SSDGIG
Trigger: TCCTATACCATCGGAAGACCATGCTGAAAATAAAGT...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGTCACTGACTTTGGGCTaGGTAGGCAAAGTTCCACTT +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMSLTLG*VGKVPL
Trigger: AAGTGGAACTTTGCCTACCCAGCCCAAAGTCAGTGA...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
CDS-3UTR CCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGGGTTCTGTCCACTTGTaGTTTGCTAAAACCAGGCTG +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMGSVHL*FAKTRL
Trigger: CAGCCTGGTTTTAGCAAACCACAAGTGGACAGAACC...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGGCAGGTTCTCTTCGCTaGTCTTCTGAGTATCCTCTT +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMAGSLR*SSEYPL
Trigger: AAGAGGATACTCAGAAGACCAGCGAAGAGAACCTGC...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGACTTGGAAGATGCTGTaGATGTACCCCTTGGGCTAT +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMTWKML*MYPLGY
Trigger: ATAGCCCAAGGGGTACATCCACAGCATCTTCCAAGT...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGTTCGTCTCTGTGGGCTaGGAACAACATCTAAGTCAT +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMFVSVG*EQHLSH
Trigger: ATGACTTAGATGTTGTTCTCAGCCCACAGAGACGAA...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGTCTTCGCTGGTCTTCTaGGTATCCTCTTTACCATCA +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMSSLVF*VSSLPS
Trigger: TGATGGTAAAGAGGATACTCAGAAGACCAGCGAAGA...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGTTTCAGACTGACTGGTaGGTCCAGCTGAAAACCATT +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMFQTDW*VQLKTI
Trigger: AATGGTTTTCAGCTGGACCCACCAGTCAGTCTGAAA...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGTTCTTCCTCAGTGTATaGATCGTTTCTTCTACGCTC +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMFFLSV*IVSSTL
Trigger: GAGCGTAGAAGAAACGATTCATACACTGAGGAAGAA...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGTATCTCCATCTTTCTTaGGCTGTCTATTGCTACTCG +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMYLHLS*AVYCYS
Trigger: CGAGTAGCAATAGACAGCTCAAGAAAGATGGAGATA...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGGTTGAATTCTTCATTTaGTGGTCCACTTTCAAGCCC +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMVEFFI*WSTFKP
Trigger: GGGCTTGAAAGTGGACCAGCAAATGAAGAATTCAAC...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR GCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGCCTTGGTTTTCTCTCTaGTTTCATACATCTTCCGGA +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMPWFSL*FHTSSG
Trigger: TCCGGAAGATGTATGAAAGCAGAGAGAAAACCAAGG...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGCATCGAAGCCAAGCATaGCACCTTATCAAGGTTAAA +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMHRSQA*HLIKVK
Trigger: TTTAACCTTGATAAGGTGCCATGCTTGGCTTCGATG...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGTATTGGGTATGGGATTaGATGACAGCAGGTTCTCTT +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMYWVWD*MTAGSL
Trigger: AAGAGAACCTGCTGTCATCCAATCCCATACCCAATA...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGGATAATCTTGTTCTTTaGTATAACGGCTGGTCTGGG +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMDNLVL*YNGWSG
Trigger: CCCAGACCAGCCGTTATACCAAAGAACAAGATTATC...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR TCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGTGTTCACTAGCTTGTTaGATGCAGTCATATCTCCAT +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMCSLAC*MQSYLH
Trigger: ATGGAGATATGACTGCATTCAACAAGCTAGTGAACA...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGCATGGTCTTCCGATaGTATAGGAGCAAAATAATT +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMSMVFR*YRSKII
Trigger: AATTATTTTGCTCCTATACCATCGGAAGACCATGCT...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CCA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGACTTTATTTTCAGCATaGTCTTCCGATGGTATAGGA +
Preference number: 4 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMTLFSA*SSDGIG
Trigger: TCCTATACCATCGGAAGACCATGCTGAAAATAAAGT...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
3UTR CAA 72 bp AAAGAAAGACTTCCAGGACTGACAATCTTGTATCCCTaGTATTTGAACCATGTAGGTTCATTCGATTTAACA +
Preference number: 4 (lower is better)
Translates to: KERLPGLTILYP*YLNHVGSFDLT
Trigger: TGTTAAATCGAATGAACCTACATGGTTCAAATACAAGGGATACAAGATTGTCAGTCCTGGAAGTCTTTCTTT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS GCA 90 bp CATTTGGCAAGGCCCACAGGGGAGCTGCTCCTTTGGCTGGTACGATaGTCCAGCTGGGAGTGCATGTGGGGCATGCCCGACCGGCTGGGT +
Preference number: 5 (lower is better)
Translates to: HLARPTGELLLWLVR*SSWECMWGMPDRLG
Trigger: ACCCAGCCGGTCGGGCATGCCCCACATGCACTCCCAGCTGGAGCATCGTACCAGCCAAAGGAGCAGCTCCCCTGTGGGCCTTGCCAAATG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS CCA 90 bp AGCCAAACCATTTGGCAAGGCCCACAGGGGAGCTGCTCCTTTGGCTaGTACGATGCTCCAGCTGGGAGTGCATGTGGGGCATGCCCGACC +
Preference number: 5 (lower is better)
Translates to: SQTIWQGPQGSCSFG*YDAPAGSACGACPT
Trigger: GGTCGGGCATGCCCCACATGCACTCCCAGCTGGAGCATCGTACCAGCCAAAGGAGCAGCTCCCCTGTGGGCCTTGCCAAATGGTTTGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCAGGGGAGCTGCTCCTTaGGCTGGTACGATGCTCCAG +
Preference number: 5 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALRGAAP*AGTMLQ
Trigger: CTGGAGCATCGTACCAGCCAAAGGAGCAGCTCCCCT...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCAGGAGAGAGGACGGCTaGCTCCAAACCTGCCAGTCT +
Preference number: 5 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALRREDG*LQTCQS
Trigger: AGACTGGCAGGTTTGGAGCAAGCCGTCCTCTCTCCT...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCAGGGACAAGGGGAACTaGGTGGGTAGGGCGGAGAAA +
Preference number: 5 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALRDKGN*VGRAEK
Trigger: TTTCTCCGCCCTACCCACCAAGTTCCCCTTGTCCCT...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCCAAAGGGTACAAGGGTaGACCCAGGAGTGGGCCAGA +
Preference number: 5 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALQRVQG*TQEWAR
Trigger: TCTGGCCCACTCCTGGGTCAACCCTTGTACCCTTTG...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCTCTGAGCCAAACCATTaGGCAAGGCCCACAGGGGAG +
Preference number: 5 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALSEPNH*ARPTGE
Trigger: CTCCCCTGTGGGCCTTGCCAAATGGTTTGGCTCAGA...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS GCA 90 bp GTAGCACATCTGAGCCAAACCATTTGGCAAGGCCCACAGGGGAGCTaGTCCTTTGGCTGGTACGATGCTCCAGCTGGGAGTGCATGTGGG +
Preference number: 5 (lower is better)
Translates to: VAHLSQTIWQGPQGS*SFGWYDAPAGSACG
Trigger: CCCACATGCACTCCCAGCTGGAGCATCGTACCAGCCAAAGGAGCAGCTCCCCTGTGGGCCTTGCCAAATGGTTTGGCTCAGATGTGCTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS CCA 90 bp TGTGGTAGGGCCAGCCCCTCCAAAGCAGCTTGCTGCAATTCTAGCTaGCTCATCTGGGCTGAGACAGGACTCATGGGCTTGCGCATGCCT +
Preference number: 5 (lower is better)
Translates to: CGRASPSKAACCNSS*LIWAETGLMGLRMP
Trigger: AGGCATGCGCAAGCCCATGAGTCCTGTCTCAGCCCAGATGAGCCAGCTAGAATTGCAGCAAGCTGCTTTGGAGGGGCTGGCCCTACCACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000135223.2
ENSMUST00000179770.8
CDS CCA 90 bp GCATGGAGGGCAGAGGCTGCTGTAGCACATCTGAGCCAAACCATTTaGCAAGGCCCACAGGGGAGCTGCTCCTTTGGCTGGTACGATGCT +
Preference number: 5 (lower is better)
Translates to: AWRAEAAVAHLSQTI*QGPQGSCSFGWYDA
Trigger: AGCATCGTACCAGCCAAAGGAGCAGCTCCCCTGTGGGCCTTGCCAAATGGTTTGGCTCAGATGTGCTACAGCAGCCTCTGCCCTCCATGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS TCA 90 bp TCTCCTGGGGACTGCTCAGGTAGGATGACATCCCTTGGAACTTCCTaGTCAGCAGAGGGCTCCTGGGCCAGAATGACTTCCACCTCGTCC +
Preference number: 5 (lower is better)
Translates to: SPGDCSGRMTSLGTS*SAEGSWARMTSTSS
Trigger: GGACGAGGTGGAAGTCATTCTGGCCCAGGAGCCCTCTGCTGATCAGGAAGTTCCAAGGGATGTCATCCTACCTGAGCAGTCCCCAGGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCAGGCAGTCCGTCGCCTaGTTCTTTTTCTGCCTTTGT +
Preference number: 5 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALRQSVA*FFFCLC
Trigger: ACAAAGGCAGAAAAAGAACAAGGCGACGGACTGCCT...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCAGGAAGCACACCAGCTaGGAGCAAACTTGGAAGATG +
Preference number: 5 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALRKHTS*EQTWKM
Trigger: CATCTTCCAAGTTTGCTCCAAGCTGGTGTGCTTCCT...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS TCA 90 bp AAGTTCTTCATGGGGTGTGGATCCAAGGCTGCTGGATCTGCTCCCTaGCCGGCTTGGGTTAGAGAACCACCTACTGAAGCGGCTGGCAGA +
Preference number: 5 (lower is better)
Translates to: KFFMGCGSKAAGSAP*PAWVREPPTEAAGR
Trigger: TCTGCCAGCCGCTTCAGTAGGTGGTTCTCTAACCCAAGCCGGTCAGGGAGCAGATCCAGCAGCCTTGGATCCACACCCCATGAAGAACTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS GCA 90 bp CTAGCTGGCTCATCTGGGCTGAGACAGGACTCATGGGCTTGCGCATaGCTTGGAATGGATCTCCAAGTAGTTGCTGGGGTCCTGAAGGGA +
Preference number: 5 (lower is better)
Translates to: LAGSSGLRQDSWACA*LGMDLQVVAGVLKG
Trigger: TCCCTTCAGGACCCCAGCAACTACTTGGAGATCCATTCCAAGGCATGCGCAAGCCCATGAGTCCTGTCTCAGCCCAGATGAGCCAGCTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000135223.2
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCCATGATGGCCTCTGCTaGGAGTATGGACGTTCTTTT +
Preference number: 5 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALHDGLC*EYGRSF
Trigger: AAAAGAACGTCCATACTCCAAGCAGAGGCCATCATG...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCAGAAGTTCACTGACTTaGGGCTGGGTAGGCAAAGTT +
Preference number: 5 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALRSSLT*GWVGKV
Trigger: AACTTTGCCTACCCAGCCCAAAGTCAGTGAACTTCT...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
CDS-3UTR CAA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCTTGGTGATGGTATCCTaGGATGAAGGTAGTCTGCTG +
Preference number: 5 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALLVMVS*DEGSLL
Trigger: CAGCAGACTACCTTCATCCAAGGATACCATCACCAA...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCTCTGGTTCTGTCCACTaGTGGTTTGCTAAAACCAGG +
Preference number: 5 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALSGSVH*WFAKTR
Trigger: CCTGGTTTTAGCAAACCACAAGTGGACAGAACCAGA...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCGTATTGGGTATGGGATaGGATGACAGCAGGTTCTCT +
Preference number: 5 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALVLGMG*DDSRFS
Trigger: AGAGAACCTGCTGTCATCCAATCCCATACCCAATAC...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS GCA 90 bp GCAATTCTAGCTGGCTCATCTGGGCTGAGACAGGACTCATGGGCTTaGGCATGCCTTGGAATGGATCTCCAAGTAGTTGCTGGGGTCCTG +
Preference number: 5 (lower is better)
Translates to: AILAGSSGLRQDSWA*ACLGMDLQVVAGVL
Trigger: CAGGACCCCAGCAACTACTTGGAGATCCATTCCAAGGCATGCGCAAGCCCATGAGTCCTGTCTCAGCCCAGATGAGCCAGCTAGAATTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000135223.2
ENSMUST00000179770.8
CDS GCA 90 bp CTTCCACCTCGTCCTCTTCAGCCACCCCTCCATTGCACTCCACTATaGCTGCTATTCTGCGCACCAGAGAAGGTCGATCGGATTCTGACT +
Preference number: 5 (lower is better)
Translates to: LPPRPLQPPLHCTPL*LLFCAPEKVDRILT
Trigger: AGTCAGAATCCGATCGACCTTCTCTGGTGCGCAGAATAGCAGGCATAGTGGAGTGCAATGGAGGGGTGGCTGAAGAGGACGAGGTGGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120721.9
CDS CCA 90 bp TCCAATGGACTGCCAGATCGTCGGGAGCTAACAGCAGCTGTCACATaGCAGCCACCTCCAAAGCTTCGTCTCTGTGGGCTGAGAACAACA +
Preference number: 5 (lower is better)
Translates to: SNGLPDRRELTAAVT*QPPPKLRLCGLRTT
Trigger: TGTTGTTCTCAGCCCACAGAGACGAAGCTTTGGAGGTGGCTGCCATGTGACAGCTGCTGTTAGCTCCCGACGATCTGGCAGTCCATTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000125637.8
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCCTGAAGGGAAACCTATaGGTGATGGTATCCTTGGAT +
Preference number: 5 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALLKGNL*VMVSLD
Trigger: ATCCAAGGATACCATCACCAATAGGTTTCCCTTCAG...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS GCA 90 bp AGTTCATCTACACTGATGACTTTGGTGGGCATGGAGGGCAGAGGCTaGTGTAGCACATCTGAGCCAAACCATTTGGCAAGGCCCACAGGG +
Preference number: 5 (lower is better)
Translates to: SSSTLMTLVGMEGRG*CSTSEPNHLARPTG
Trigger: CCCTGTGGGCCTTGCCAAATGGTTTGGCTCAGATGTGCTACAGCAGCCTCTGCCCTCCATGCCCACCAAAGTCATCAGTGTAGATGAACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS CCA 90 bp TCTTCGTCCACCAAGCAGGCGAAGTCCATCACTGTCTTTCTCCAATaGACTGCCAGATCGTCGGGAGCTAACAGCAGCTGTCACATGGCA +
Preference number: 5 (lower is better)
Translates to: SSSTKQAKSITVFLQ*TARSSGANSSCHMA
Trigger: TGCCATGTGACAGCTGCTGTTAGCTCCCGACGATCTGGCAGTCCATTGGAGAAAGACAGTGATGGACTTCGCCTGCTTGGTGGACGAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000125637.8
ENSMUST00000179770.8
CDS CCA 90 bp CTTGCTGCAATTCTAGCTGGCTCATCTGGGCTGAGACAGGACTCATaGGCTTGCGCATGCCTTGGAATGGATCTCCAAGTAGTTGCTGGG +
Preference number: 5 (lower is better)
Translates to: LAAILAGSSGLRQDS*ACACLGMDLQVVAG
Trigger: CCCAGCAACTACTTGGAGATCCATTCCAAGGCATGCGCAAGCCCATGAGTCCTGTCTCAGCCCAGATGAGCCAGCTAGAATTGCAGCAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000135223.2
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCATATCTCCATCTTTCTaGAGCTGTCTATTGCTACTC +
Preference number: 5 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALISPSF*SCLLLL
Trigger: GAGTAGCAATAGACAGCTCAAGAAAGATGGAGATAT...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS TCA 90 bp CTGTCTCGGTCTCTCAAGTCTCGCAGGTCCTTATCACTGAGACGGTaGTCCTTTTCAAAGGCCCGGGCAGAAATTATCCTTCCACTGCCA +
Preference number: 5 (lower is better)
Translates to: LSRSLKSRRSLSLRR*SFSKARAEIILPLP
Trigger: TGGCAGTGGAAGGATAATTTCTGCCCGGGCCTTTGAAAAGGATCACCGTCTCAGTGATAAGGACCTGCGAGACTTGAGAGACCGAGACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000125637.8
ENSMUST00000179770.8
CDS TCA 90 bp CCCTCTCTCTGTCTCGGTCTCTCAAGTCTCGCAGGTCCTTATCACTaGGACGGTGATCCTTTTCAAAGGCCCGGGCAGAAATTATCCTTC +
Preference number: 5 (lower is better)
Translates to: PSLCLGLSSLAGPYH*DGDPFQRPGQKLSF
Trigger: GAAGGATAATTTCTGCCCGGGCCTTTGAAAAGGATCACCGTCTCAGTGATAAGGACCTGCGAGACTTGAGAGACCGAGACAGAGAGAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000125637.8
ENSMUST00000179770.8
CDS GCA 90 bp GGACTCATGGGCTTGCGCATGCCTTGGAATGGATCTCCAAGTAGTTaGTGGGGTCCTGAAGGGAAACCTATTGGTGATGGTATCCTTGGA +
Preference number: 5 (lower is better)
Translates to: GLMGLRMPWNGSPSS*WGPEGKPIGDGILG
Trigger: TCCAAGGATACCATCACCAATAGGTTTCCCTTCAGGACCCCAGCAACTACTTGGAGATCCATTCCAAGGCATGCGCAAGCCCATGAGTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000135223.2
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp GTCATGACCAGGGTGTCACCACAGGTCCAGGTATGGGTGAGCCAGCCTGCCCTCTTTAGGTCGATAATCTaGTTCTTTGGTATAACGGCT +
Preference number: 5 (lower is better)
Translates to: VMTRVSPQVQVWVSQPALFRSII*FFGITA
Trigger: AGCCGTTATACCAAAGAACAAGATTATCGACCTAAA...GAGGGCAGGCTGGCTCACCCATACCTGGACCTGTGGTGACACCCTGGTCATGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGAGGGGAGCTGCTCCTTaGGCTGGTACGATGCTCCAG +
Preference number: 5 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRRGAAP*AGTMLQ
Trigger: CTGGAGCATCGTACCAGCCAAAGGAGCAGCTCCCCT...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS TCA 90 bp TTGGGTATGGGATTGGATGACAGCAGGTTCTCTTCGCTGGTCTTCTaGGTATCCTCTTTACCATCACCAGGAACCACCATTCCAGGTGCC +
Preference number: 5 (lower is better)
Translates to: LGMGLDDSRFSSLVF*VSSLPSPGTTIPGA
Trigger: GGCACCTGGAATGGTGGTTCCTGGTGATGGTAAAGAGGATACTCAGAAGACCAGCGAAGAGAACCTGCTGTCATCCAATCCCATACCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS GCA 90 bp GACGGTGATCCTTTTCAAAGGCCCGGGCAGAAATTATCCTTCCACTaGCAATTCTTCGTCCACCAAGCAGGCGAAGTCCATCACTGTCTT +
Preference number: 5 (lower is better)
Translates to: DGDPFQRPGQKLSFH*QFFVHQAGEVHHCL
Trigger: AAGACAGTGATGGACTTCGCCTGCTTGGTGGACGAAGAATTGGCAGTGGAAGGATAATTTCTGCCCGGGCCTTTGAAAAGGATCACCGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000125637.8
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGAGGGACAAGGGGAACTaGGTGGGTAGGGCGGAGAAA +
Preference number: 5 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRRDKGN*VGRAEK
Trigger: TTTCTCCGCCCTACCCACCAAGTTCCCCTTGTCCCT...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGCAAAGGGTACAAGGGTaGACCCAGGAGTGGGCCAGA +
Preference number: 5 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRQRVQG*TQEWAR
Trigger: TCTGGCCCACTCCTGGGTCAACCCTTGTACCCTTTG...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGTCTGAGCCAAACCATTaGGCAAGGCCCACAGGGGAG +
Preference number: 5 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRSEPNH*ARPTGE
Trigger: CTCCCCTGTGGGCCTTGCCAAATGGTTTGGCTCAGA...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS GCA 90 bp TCTATCCCAGGAGGAAGCACACCAGCTTGGAGCAAACTTGGAAGATaGTGTGGATGTACCCCTTGGGCTATCAACCTTTGGACTAATCCT +
Preference number: 5 (lower is better)
Translates to: SIPGGSTPAWSKLGR*CGCTPWAINLWTNP
Trigger: AGGATTAGTCCAAAGGTTGATAGCCCAAGGGGTACATCCACAGCATCTTCCAAGTTTGCTCCAAGCTGGTGTGCTTCCTCCTGGGATAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCAAGGAGAGAGGACGGCTaGCTCCAAACCTGCCAGTCT +
Preference number: 5 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPRREDG*LQTCQS
Trigger: AGACTGGCAGGTTTGGAGCAAGCCGTCCTCTCTCCT...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGACAGGACTCATGGGCTaGCGCATGCCTTGGAATGGA +
Preference number: 5 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRTGLMG*RMPWNG
Trigger: TCCATTCCAAGGCATGCGCAAGCCCATGAGTCCTGT...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCACAAAGGGTACAAGGGTaGACCCAGGAGTGGGCCAGA +
Preference number: 5 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPQRVQG*TQEWAR
Trigger: TCTGGCCCACTCCTGGGTCAACCCTTGTACCCTTTG...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCATCTGAGCCAAACCATTaGGCAAGGCCCACAGGGGAG +
Preference number: 5 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPSEPNH*ARPTGE
Trigger: CTCCCCTGTGGGCCTTGCCAAATGGTTTGGCTCAGA...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCAACAGGACTCATGGGCTaGCGCATGCCTTGGAATGGA +
Preference number: 5 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPTGLMG*RMPWNG
Trigger: TCCATTCCAAGGCATGCGCAAGCCCATGAGTCCTGT...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGTGGGTGCTGGTGACTTaGACATTCGCTGTTGCCTGT +
Preference number: 5 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRWVLVT*TFAVAC
Trigger: ACAGGCAACAGCGAATGTCAAAGTCACCAGCACCCA...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS TCA 90 bp TTTTTAGAAACAGGCTGGCCTGGAATCTCAGCAGGGGCCAATAAGTaGCTTTCAACGTTTCGACTGACTTTGGGCTGGGTAGGCAAAGTT +
Preference number: 5 (lower is better)
Translates to: FLETGWPGISAGANK*LSTFRLTLGWVGKV
Trigger: AACTTTGCCTACCCAGCCCAAAGTCAGTCGAAACGTTGAAAGTCACTTATTGGCCCCTGCTGAGATTCCAGGCCAGCCTGTTTCTAAAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110049.8
ENSMUST00000135223.2
ENSMUST00000179770.8
CDS CCA 90 bp GATCAGTATTGGGTATGGGATTGGATGACAGCAGGTTCTCTTCGCTaGTCTTCTGAGTATCCTCTTTACCATCACCAGGAACCACCATTC +
Preference number: 5 (lower is better)
Translates to: DQYWVWDWMTAGSLR*SSEYPLYHHQEPPF
Trigger: GAATGGTGGTTCCTGGTGATGGTAAAGAGGATACTCAGAAGACCAGCGAAGAGAACCTGCTGTCATCCAATCCCATACCCAATACTGATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGAGGCAGTCCGTCGCCTaGTTCTTTTTCTGCCTTTGT +
Preference number: 5 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRRQSVA*FFFCLC
Trigger: ACAAAGGCAGAAAAAGAACAAGGCGACGGACTGCCT...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGAAATACCTGTGACATaGGAGGAGAGGGCGCTCTTT +
Preference number: 5 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTREIPVT*EERALF
Trigger: AAAGAGCGCCCTCTCCTCCAATGTCACAGGTATTTC...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCATGGGTGCTGGTGACTTaGACATTCGCTGTTGCCTGT +
Preference number: 5 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPWVLVT*TFAVAC
Trigger: ACAGGCAACAGCGAATGTCAAAGTCACCAGCACCCA...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGAGGAAGCACACCAGCTaGGAGCAAACTTGGAAGATG +
Preference number: 5 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRRKHTS*EQTWKM
Trigger: CATCTTCCAAGTTTGCTCCAAGCTGGTGTGCTTCCT...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGGGGAGCTGCTCCTTaGGCTGGTACGATGCTCCAG +
Preference number: 5 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMRGAAP*AGTMLQ
Trigger: CTGGAGCATCGTACCAGCCAAAGGAGCAGCTCCCCT...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS TCA 90 bp CTCAGGGTCCCAGACACCATCACTGTCATATTTTTCAGAGAGGCATaGTGGCCTCTGCTTGGAGTATGGACGTTCTTTTATATCCAAGAG +
Preference number: 5 (lower is better)
Translates to: LRVPDTITVIFFREA*WPLLGVWTFFYIQE
Trigger: CTCTTGGATATAAAAGAACGTCCATACTCCAAGCAGAGGCCATCATGCCTCTCTGAAAAATATGACAGTGATGGTGTCTGGGACCCTGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000125637.8
ENSMUST00000179770.8
CDS TCA 90 bp TCCTTCACAGAGGCAGTCCGTCGCCTTGTTCTTTTTCTGCCTTTGTaGTCCTCCTCTAGAATCTTATCATCAAAGCCAGTCAGCTCTATG +
Preference number: 5 (lower is better)
Translates to: SFTEAVRRLVLFLPL*SSSRILSSKPVSSM
Trigger: CATAGAGCTGACTGGCTTTGATGATAAGATTCTAGAGGAGGATCACAAAGGCAGAAAAAGAACAAGGCGACGGACTGCCTCTGTGAAGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGCATGATGGCCTCTGCTaGGAGTATGGACGTTCTTTT +
Preference number: 5 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRHDGLC*EYGRSF
Trigger: AAAAGAACGTCCATACTCCAAGCAGAGGCCATCATG...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGGAGAGAGGACGGCTaGCTCCAAACCTGCCAGTCT +
Preference number: 5 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMRREDG*LQTCQS
Trigger: AGACTGGCAGGTTTGGAGCAAGCCGTCCTCTCTCCT...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGTCTGGTTCTGTCCACTaGTGGTTTGCTAAAACCAGG +
Preference number: 5 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRSGSVH*WFAKTR
Trigger: CCTGGTTTTAGCAAACCACAAGTGGACAGAACCAGA...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTATTGGGTATGGGATaGGATGACAGCAGGTTCTCT +
Preference number: 5 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRVLGMG*DDSRFS
Trigger: AGAGAACCTGCTGTCATCCAATCCCATACCCAATAC...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGGGACAAGGGGAACTaGGTGGGTAGGGCGGAGAAA +
Preference number: 5 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMRDKGN*VGRAEK
Trigger: TTTCTCCGCCCTACCCACCAAGTTCCCCTTGTCCCT...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCAAGGAAGCACACCAGCTaGGAGCAAACTTGGAAGATG +
Preference number: 5 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPRKHTS*EQTWKM
Trigger: CATCTTCCAAGTTTGCTCCAAGCTGGTGTGCTTCCT...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGCAAAGGGTACAAGGGTaGACCCAGGAGTGGGCCAGA +
Preference number: 5 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMQRVQG*TQEWAR
Trigger: TCTGGCCCACTCCTGGGTCAACCCTTGTACCCTTTG...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGTCTGAGCCAAACCATTaGGCAAGGCCCACAGGGGAG +
Preference number: 5 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMSEPNH*ARPTGE
Trigger: CTCCCCTGTGGGCCTTGCCAAATGGTTTGGCTCAGA...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS TCA 90 bp TCTAGAATCTTATCATCAAAGCCAGTCAGCTCTATGGTTTCAGACTaGCTGGTGGGTCCAGCTGAAAACCATTCTGGTTCTTCCTCAGTG +
Preference number: 5 (lower is better)
Translates to: SRILSSKPVSSMVSD*LVGPAENHSGSSSV
Trigger: CACTGAGGAAGAACCAGAATGGTTTTCAGCTGGACCCACCAGTCAGTCTGAAACCATAGAGCTGACTGGCTTTGATGATAAGATTCTAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS CCA 90 bp GAATCTTATCATCAAAGCCAGTCAGCTCTATGGTTTCAGACTGACTaGTGGGTCCAGCTGAAAACCATTCTGGTTCTTCCTCAGTGTATG +
Preference number: 5 (lower is better)
Translates to: ESYHQSQSALWFQTD*WVQLKTILVLPQCM
Trigger: CATACACTGAGGAAGAACCAGAATGGTTTTCAGCTGGACCCACCAGTCAGTCTGAAACCATAGAGCTGACTGGCTTTGATGATAAGATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS CCA 90 bp TGTGATCCTCCTCTAGAATCTTATCATCAAAGCCAGTCAGCTCTATaGTTTCAGACTGACTGGTGGGTCCAGCTGAAAACCATTCTGGTT +
Preference number: 5 (lower is better)
Translates to: CDPPLESYHQSQSAL*FQTDWWVQLKTILV
Trigger: AACCAGAATGGTTTTCAGCTGGACCCACCAGTCAGTCTGAAACCATAGAGCTGACTGGCTTTGATGATAAGATTCTAGAGGAGGATCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGGGGTCTCTGAACCGGTaGACCCAGAAGTTCACTGAC +
Preference number: 5 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMGSLNR*TQKFTD
Trigger: GTCAGTGAACTTCTGGGTCAACCGGTTCAGAGACCC...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
CDS-3UTR CAA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCATTGGTGATGGTATCCTaGGATGAAGGTAGTCTGCTG +
Preference number: 5 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPLVMVS*DEGSLL
Trigger: CAGCAGACTACCTTCATCCAAGGATACCATCACCAA...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGCTGAAGGGAAACCTATaGGTGATGGTATCCTTGGAT +
Preference number: 5 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRLKGNL*VMVSLD
Trigger: ATCCAAGGATACCATCACCAATAGGTTTCCCTTCAG...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGACAGGACTCATGGGCTaGCGCATGCCTTGGAATGGA +
Preference number: 5 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMTGLMG*RMPWNG
Trigger: TCCATTCCAAGGCATGCGCAAGCCCATGAGTCCTGT...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCAGTATTGGGTATGGGATaGGATGACAGCAGGTTCTCT +
Preference number: 5 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPVLGMG*DDSRFS
Trigger: AGAGAACCTGCTGTCATCCAATCCCATACCCAATAC...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS TCA 90 bp ATTTGTCGTAGAAGAGTCTTGATCAGTATTGGGTATGGGATTGGATaGCAGCAGGTTCTCTTCGCTGGTCTTCTGAGTATCCTCTTTACC +
Preference number: 5 (lower is better)
Translates to: ICRRRVLISIGYGIG*QQVLFAGLLSILFT
Trigger: GGTAAAGAGGATACTCAGAAGACCAGCGAAGAGAACCTGCTGTCATCCAATCCCATACCCAATACTGATCAAGACTCTTCTACGACAAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS CCA 90 bp TCTTATCATCAAAGCCAGTCAGCTCTATGGTTTCAGACTGACTGGTaGGTCCAGCTGAAAACCATTCTGGTTCTTCCTCAGTGTATGAAT +
Preference number: 5 (lower is better)
Translates to: SYHQSQSALWFQTDW*VQLKTILVLPQCMN
Trigger: ATTCATACACTGAGGAAGAACCAGAATGGTTTTCAGCTGGACCCACCAGTCAGTCTGAAACCATAGAGCTGACTGGCTTTGATGATAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTTCACTAGCTTGTaGAATGCAGTCATATCTCCA +
Preference number: 5 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRVFTSL*NAVISP
Trigger: TGGAGATATGACTGCATTCAACAAGCTAGTGAACAC...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCACTGAAGGGAAACCTATaGGTGATGGTATCCTTGGAT +
Preference number: 5 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPLKGNL*VMVSLD
Trigger: ATCCAAGGATACCATCACCAATAGGTTTCCCTTCAG...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS CCA 90 bp CACCATCACTGTCATATTTTTCAGAGAGGCATGATGGCCTCTGCTTaGAGTATGGACGTTCTTTTATATCCAAGAGCTCCTCTTTCGTAT +
Preference number: 5 (lower is better)
Translates to: HHHCHIFQRGMMASA*SMDVLLYPRAPLSY
Trigger: ATACGAAAGAGGAGCTCTTGGATATAAAAGAACGTCCATACTCCAAGCAGAGGCCATCATGCCTCTCTGAAAAATATGACAGTGATGGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000125637.8
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGATATCTCCATCTTTCTaGAGCTGTCTATTGCTACTC +
Preference number: 5 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRISPSF*SCLLLL
Trigger: GAGTAGCAATAGACAGCTCAAGAAAGATGGAGATAT...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCAGTGTTCACTAGCTTGTaGAATGCAGTCATATCTCCA +
Preference number: 5 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPVFTSL*NAVISP
Trigger: TGGAGATATGACTGCATTCAACAAGCTAGTGAACAC...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGATGGTGTTCACTAGCTaGTTGAATGCAGTCATATCT +
Preference number: 5 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRMVFTS*LNAVIS
Trigger: AGATATGACTGCATTCAACAAGCTAGTGAACACCAT...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGGAAATACCTGTGACATaGGAGGAGAGGGCGCTCTTT +
Preference number: 5 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMEIPVT*EERALF
Trigger: AAAGAGCGCCCTCTCCTCCAATGTCACAGGTATTTC...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGACGTTTCGACTGACTTaGGGCTGGGTAGGCAAAGTT +
Preference number: 5 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMTFRLT*GWVGKV
Trigger: AACTTTGCCTACCCAGCCCAAAGTCAGTCGAAACGT...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGCATGATGGCCTCTGCTaGGAGTATGGACGTTCTTTT +
Preference number: 5 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMHDGLC*EYGRSF
Trigger: AAAAGAACGTCCATACTCCAAGCAGAGGCCATCATG...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCAATATCTCCATCTTTCTaGAGCTGTCTATTGCTACTC +
Preference number: 5 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPISPSF*SCLLLL
Trigger: GAGTAGCAATAGACAGCTCAAGAAAGATGGAGATAT...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCAATGGTGTTCACTAGCTaGTTGAATGCAGTCATATCT +
Preference number: 5 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPMVFTS*LNAVIS
Trigger: AGATATGACTGCATTCAACAAGCTAGTGAACACCAT...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGTTGGTGATGGTATCCTaGGATGAAGGTAGTCTGCTG +
Preference number: 5 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMLVMVS*DEGSLL
Trigger: CAGCAGACTACCTTCATCCAAGGATACCATCACCAA...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGTCTGGTTCTGTCCACTaGTGGTTTGCTAAAACCAGG +
Preference number: 5 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMSGSVH*WFAKTR
Trigger: CCTGGTTTTAGCAAACCACAAGTGGACAGAACCAGA...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGGTATTGGGTATGGGATaGGATGACAGCAGGTTCTCT +
Preference number: 5 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMVLGMG*DDSRFS
Trigger: AGAGAACCTGCTGTCATCCAATCCCATACCCAATAC...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp GTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGTTTAGGTCGATAATCTaGTTCTTTGGTATAACGGCT +
Preference number: 5 (lower is better)
Translates to: VCSNVKAHYKEGMRVMTRFRSII*FFGITA
Trigger: AGCCGTTATACCAAAGAACAAGATTATCGACCTAAA...CCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp AATGTAAAAGCCCATTACAAAGAGGGAATGAGAGTCATGACCAGGGTGTCACCATTTAGGTCGATAATCTaGTTCTTTGGTATAACGGCT +
Preference number: 5 (lower is better)
Translates to: NVKAHYKEGMRVMTRVSPFRSII*FFGITA
Trigger: AGCCGTTATACCAAAGAACAAGATTATCGACCTAAA...TGGTGACACCCTGGTCATGACTCTCATTCCCTCTTTGTAATGGGCTTTTACATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGGTGTTCACTAGCTTGTaGAATGCAGTCATATCTCCA +
Preference number: 5 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMVFTSL*NAVISP
Trigger: TGGAGATATGACTGCATTCAACAAGCTAGTGAACAC...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGATGGTGTTCACTAGCTaGTTGAATGCAGTCATATCT +
Preference number: 5 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMMVFTS*LNAVIS
Trigger: AGATATGACTGCATTCAACAAGCTAGTGAACACCAT...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS-3UTR CAA 90 bp AAACATCTTCACATAGTGTGCTCCAATGTAAAAGCCCATTACAAAGAGGGAATGTTTAGGTCGATAATCTaGTTCTTTGGTATAACGGCT +
Preference number: 5 (lower is better)
Translates to: KHLHIVCSNVKAHYKEGMFRSII*FFGITA
Trigger: AGCCGTTATACCAAAGAACAAGATTATCGACCTAAA...CATTCCCTCTTTGTAATGGGCTTTTACATTGGAGCACACTATGTGAAGATGTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS CCA 72 bp GGGGAGCTGCTCCTTTGGCTGGTACGATGCTCCAGCTaGGAGTGCATGTGGGGCATGCCCGACCGGCTGGGT +
Preference number: 6 (lower is better)
Translates to: GELLLWLVRCSS*ECMWGMPDRLG
Trigger: ACCCAGCCGGTCGGGCATGCCCCACATGCACTCCCAGCTGGAGCATCGTACCAGCCAAAGGAGCAGCTCCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS GCA 72 bp ACTGAGCGCTGTAGCTGCTGCTGCATCACCGCCAAATaGAGAGGGGTCCCAGGACGAGGGTTTAGGAGAGGG +
Preference number: 6 (lower is better)
Translates to: TERCSCCCITAK*RGVPGRGFRRG
Trigger: CCCTCTCCTAAACCCTCGTCCTGGGACCCCTCTGCATTTGGCGGTGATGCAGCAGCAGCTACAGCGCTCAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS GCA 72 bp CCTGGAGGATGCAGAACTGAGCGCTGTAGCTGCTGCTaGATCACCGCCAAATGCAGAGGGGTCCCAGGACGA +
Preference number: 6 (lower is better)
Translates to: PGGCRTERCSCC*ITAKCRGVPGR
Trigger: TCGTCCTGGGACCCCTCTGCATTTGGCGGTGATGCAGCAGCAGCTACAGCGCTCAGTTCTGCATCCTCCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS GCA 72 bp GAGCCTGGAGGATGCAGAACTGAGCGCTGTAGCTGCTaGTGCATCACCGCCAAATGCAGAGGGGTCCCAGGA +
Preference number: 6 (lower is better)
Translates to: EPGGCRTERCSC*CITAKCRGVPG
Trigger: TCCTGGGACCCCTCTGCATTTGGCGGTGATGCAGCAGCAGCTACAGCGCTCAGTTCTGCATCCTCCAGGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS CAA 90 bp GGCATGGAGGGCAGAGGCTGCTGTAGCACATCTGAGCCAAACCATTaGGCAAGGCCCACAGGGGAGCTGCTCCTTTGGCTGGTACGATGC +
Preference number: 6 (lower is better)
Translates to: GMEGRGCCSTSEPNH*ARPTGELLLWLVRC
Trigger: GCATCGTACCAGCCAAAGGAGCAGCTCCCCTGTGGGCCTTGCCAAATGGTTTGGCTCAGATGTGCTACAGCAGCCTCTGCCCTCCATGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS GCA 72 bp CTAGAGCCTGGAGGATGCAGAACTGAGCGCTGTAGCTaGTGCTGCATCACCGCCAAATGCAGAGGGGTCCCA +
Preference number: 6 (lower is better)
Translates to: LEPGGCRTERCS*CCITAKCRGVP
Trigger: TGGGACCCCTCTGCATTTGGCGGTGATGCAGCAGCAGCTACAGCGCTCAGTTCTGCATCCTCCAGGCTCTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS GCA 72 bp CTGAGCCAAACCATTTGGCAAGGCCCACAGGGGAGCTaGTCCTTTGGCTGGTACGATGCTCCAGCTGGGAGT +
Preference number: 6 (lower is better)
Translates to: LSQTIWQGPQGS*SFGWYDAPAGS
Trigger: ACTCCCAGCTGGAGCATCGTACCAGCCAAAGGAGCAGCTCCCCTGTGGGCCTTGCCAAATGGTTTGGCTCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS CCA 72 bp CTGCCAGATCGTCGGGAGCTAACAGCAGCTGTCACATaGCAGCCACCTCCAAAGCTTCGTCTCTGTGGGCTG +
Preference number: 6 (lower is better)
Translates to: LPDRRELTAAVT*QPPPKLRLCGL
Trigger: CAGCCCACAGAGACGAAGCTTTGGAGGTGGCTGCCATGTGACAGCTGCTGTTAGCTCCCGACGATCTGGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000125637.8
ENSMUST00000179770.8
CDS CAA 72 bp GGCAGAGGCTGCTGTAGCACATCTGAGCCAAACCATTaGGCAAGGCCCACAGGGGAGCTGCTCCTTTGGCTG +
Preference number: 6 (lower is better)
Translates to: GRGCCSTSEPNH*ARPTGELLLWL
Trigger: CAGCCAAAGGAGCAGCTCCCCTGTGGGCCTTGCCAAATGGTTTGGCTCAGATGTGCTACAGCAGCCTCTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS CAA 90 bp TGGGCCAGAATGACTTCCACCTCGTCCTCTTCAGCCACCCCTCCATaGCACTCCACTATGCCTTCCTTCACAGAGGCAGTCCGTCGCCTT +
Preference number: 6 (lower is better)
Translates to: WARMTSTSSSSATPP*HSTMPSFTEAVRRL
Trigger: AAGGCGACGGACTGCCTCTGTGAAGGAAGGCATAGTGGAGTGCAATGGAGGGGTGGCTGAAGAGGACGAGGTGGAAGTCATTCTGGCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS TCA 72 bp ATGGGGTGTGGATCCAAGGCTGCTGGATCTGCTCCCTaGCCGGCTTGGGTTAGAGAACCACCTACTGAAGCG +
Preference number: 6 (lower is better)
Translates to: MGCGSKAAGSAP*PAWVREPPTEA
Trigger: CGCTTCAGTAGGTGGTTCTCTAACCCAAGCCGGTCAGGGAGCAGATCCAGCAGCCTTGGATCCACACCCCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS GCA 72 bp CGTCCTCTTCAGCCACCCCTCCATTGCACTCCACTATaGCTGCTATTCTGCGCACCAGAGAAGGTCGATCGG +
Preference number: 6 (lower is better)
Translates to: RPLQPPLHCTPL*LLFCAPEKVDR
Trigger: CCGATCGACCTTCTCTGGTGCGCAGAATAGCAGGCATAGTGGAGTGCAATGGAGGGGTGGCTGAAGAGGACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120721.9
CDS CCA 72 bp GCCAGCCCCTCCAAAGCAGCTTGCTGCAATTCTAGCTaGCTCATCTGGGCTGAGACAGGACTCATGGGCTTG +
Preference number: 6 (lower is better)
Translates to: ASPSKAACCNSS*LIWAETGLMGL
Trigger: CAAGCCCATGAGTCCTGTCTCAGCCCAGATGAGCCAGCTAGAATTGCAGCAAGCTGCTTTGGAGGGGCTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000135223.2
ENSMUST00000179770.8
CDS GCA 72 bp TCATCTGGGCTGAGACAGGACTCATGGGCTTGCGCATaGCTTGGAATGGATCTCCAAGTAGTTGCTGGGGTC +
Preference number: 6 (lower is better)
Translates to: SSGLRQDSWACA*LGMDLQVVAGV
Trigger: GACCCCAGCAACTACTTGGAGATCCATTCCAAGGCATGCGCAAGCCCATGAGTCCTGTCTCAGCCCAGATGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000135223.2
ENSMUST00000179770.8
CDS GCA 72 bp GCTGGCTCATCTGGGCTGAGACAGGACTCATGGGCTTaGGCATGCCTTGGAATGGATCTCCAAGTAGTTGCT +
Preference number: 6 (lower is better)
Translates to: AGSSGLRQDSWA*ACLGMDLQVVA
Trigger: AGCAACTACTTGGAGATCCATTCCAAGGCATGCGCAAGCCCATGAGTCCTGTCTCAGCCCAGATGAGCCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000135223.2
ENSMUST00000179770.8
CDS GCA 72 bp GAGGCAGCAGGAGCTGGGGAAGAGGAATTTCCACCATaGATGGGTGCTGGTGACTTTGACATTCGCTGTTGC +
Preference number: 6 (lower is better)
Translates to: EAAGAGEEEFPP*MGAGDFDIRCC
Trigger: GCAACAGCGAATGTCAAAGTCACCAGCACCCATGCATGGTGGAAATTCCTCTTCCCCAGCTCCTGCTGCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS GCA 72 bp GCTGGGTACATTCTGAGGAGTCTGAACGCTGATAGCTaGTGCCTGGGAACTAGAGCCTGGAGGATGCAGAAC +
Preference number: 6 (lower is better)
Translates to: AGYILRSLNADS*CLGTRAWRMQN
Trigger: GTTCTGCATCCTCCAGGCTCTAGTTCCCAGGCAGCAGCTATCAGCGTTCAGACTCCTCAGAATGTACCCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS GCA 72 bp CTCTTCAGCCACCCCTCCATTGCACTCCACTATGCCTaGTATTCTGCGCACCAGAGAAGGTCGATCGGATTC +
Preference number: 6 (lower is better)
Translates to: LFSHPSIALHYA*YSAHQRRSIGF
Trigger: GAATCCGATCGACCTTCTCTGGTGCGCAGAATAGCAGGCATAGTGGAGTGCAATGGAGGGGTGGCTGAAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120721.9
CDS CCA 72 bp AGGAGAAAGCATGCTTGTGATGGAGGCAGCAGGAGCTaGGGAAGAGGAATTTCCACCATGCATGGGTGCTGG +
Preference number: 6 (lower is better)
Translates to: RRKHACDGGSRS*GRGISTMHGCW
Trigger: CCAGCACCCATGCATGGTGGAAATTCCTCTTCCCCAGCTCCTGCTGCCTCCATCACAAGCATGCTTTCTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS CCA 72 bp TTGGTGGGTAGGGCGGAGAAAAGGTGTTCCTGGGACTaGGGATGCCAAGGTAGGTGTTTTCCTTCCTGCTGT +
Preference number: 6 (lower is better)
Translates to: LVGRAEKRCSWD*GCQGRCFPSCC
Trigger: ACAGCAGGAAGGAAAACACCTACCTTGGCATCCCCAGTCCCAGGAACACCTTTTCTCCGCCCTACCCACCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS CAA 72 bp ATGACTTCCACCTCGTCCTCTTCAGCCACCCCTCCATaGCACTCCACTATGCCTTCCTTCACAGAGGCAGTC +
Preference number: 6 (lower is better)
Translates to: MTSTSSSSATPP*HSTMPSFTEAV
Trigger: GACTGCCTCTGTGAAGGAAGGCATAGTGGAGTGCAATGGAGGGGTGGCTGAAGAGGACGAGGTGGAAGTCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS CAA 72 bp ATGACTTCCACCTCGTCCTCTTCAGCCACCCCTCCATaGCACTCCACTATGCCTGCTATTCTGCGCACCAGA +
Preference number: 6 (lower is better)
Translates to: MTSTSSSSATPP*HSTMPAILRTR
Trigger: TCTGGTGCGCAGAATAGCAGGCATAGTGGAGTGCAATGGAGGGGTGGCTGAAGAGGACGAGGTGGAAGTCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120721.9
CDS CAA 90 bp TGCAATTCTAGCTGGCTCATCTGGGCTGAGACAGGACTCATGGGCTaGCGCATGCCTTGGAATGGATCTCCAAGTAGTTGCTGGGGTCCT +
Preference number: 6 (lower is better)
Translates to: CNSSWLIWAETGLMG*RMPWNGSPSSCWGP
Trigger: AGGACCCCAGCAACTACTTGGAGATCCATTCCAAGGCATGCGCAAGCCCATGAGTCCTGTCTCAGCCCAGATGAGCCAGCTAGAATTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000135223.2
ENSMUST00000179770.8
CDS GCA 72 bp ACACTGATGACTTTGGTGGGCATGGAGGGCAGAGGCTaGTGTAGCACATCTGAGCCAAACCATTTGGCAAGG +
Preference number: 6 (lower is better)
Translates to: TLMTLVGMEGRG*CSTSEPNHLAR
Trigger: CCTTGCCAAATGGTTTGGCTCAGATGTGCTACAGCAGCCTCTGCCCTCCATGCCCACCAAAGTCATCAGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS CCA 72 bp ACCAAGCAGGCGAAGTCCATCACTGTCTTTCTCCAATaGACTGCCAGATCGTCGGGAGCTAACAGCAGCTGT +
Preference number: 6 (lower is better)
Translates to: TKQAKSITVFLQ*TARSSGANSSC
Trigger: ACAGCTGCTGTTAGCTCCCGACGATCTGGCAGTCCATTGGAGAAAGACAGTGATGGACTTCGCCTGCTTGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000125637.8
ENSMUST00000179770.8
CDS CAA 72 bp AGGTCGAACAATAGGAACATGAGGGACAAGGGGAACTaGGTGGGTAGGGCGGAGAAAAGGTGTTCCTGGGAC +
Preference number: 6 (lower is better)
Translates to: RSNNRNMRDKGN*VGRAEKRCSWD
Trigger: GTCCCAGGAACACCTTTTCTCCGCCCTACCCACCAAGTTCCCCTTGTCCCTCATGTTCCTATTGTTCGACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS TCA 72 bp TGTCTCGGTCTCTCAAGTCTCGCAGGTCCTTATCACTaGGACGGTGATCCTTTTCAAAGGCCCGGGCAGAAA +
Preference number: 6 (lower is better)
Translates to: CLGLSSLAGPYH*DGDPFQRPGQK
Trigger: TTTCTGCCCGGGCCTTTGAAAAGGATCACCGTCTCAGTGATAAGGACCTGCGAGACTTGAGAGACCGAGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000125637.8
ENSMUST00000179770.8
CDS GCA 72 bp GGCTTGCGCATGCCTTGGAATGGATCTCCAAGTAGTTaGTGGGGTCCTGAAGGGAAACCTATTGGTGATGGT +
Preference number: 6 (lower is better)
Translates to: GLRMPWNGSPSS*WGPEGKPIGDG
Trigger: ACCATCACCAATAGGTTTCCCTTCAGGACCCCAGCAACTACTTGGAGATCCATTCCAAGGCATGCGCAAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000135223.2
ENSMUST00000179770.8
CDS CAA 72 bp ACTGAGAAGATTGGAAGAAGCGGGTCTCTGAACCGGTaGACCCAGAAGTTCACTGACTTTGGGCTGGGTAGG +
Preference number: 6 (lower is better)
Translates to: TEKIGRSGSLNR*TQKFTDFGLGR
Trigger: CCTACCCAGCCCAAAGTCAGTGAACTTCTGGGTCAACCGGTTCAGAGACCCGCTTCTTCCAATCTTCTCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
CDS CAA 72 bp ATAATTCCCCGAGTTCTGTCCAGGAGAGAGGACGGCTaGCTCCAAACCTGCCAGTCTCTCAAGTTCTTCATG +
Preference number: 6 (lower is better)
Translates to: IIPRVLSRREDG*LQTCQSLKFFM
Trigger: CATGAAGAACTTGAGAGACTGGCAGGTTTGGAGCAAGCCGTCCTCTCTCCTGGACAGAACTCGGGGAATTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS CAA 72 bp GGGGTCCTGAAGGGAAACCTATTGGTGATGGTATCCTaGGATGAAGGTAGTCTGCTGAGGCTGCTTGAGTTC +
Preference number: 6 (lower is better)
Translates to: GVLKGNLLVMVS*DEGSLLRLLEF
Trigger: GAACTCAAGCAGCCTCAGCAGACTACCTTCATCCAAGGATACCATCACCAATAGGTTTCCCTTCAGGACCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000135223.2
ENSMUST00000179770.8
CDS TCA 72 bp CATGGCAGCCACCTCCAAAGCTTCGTCTCTGTGGGCTaGGAACAACATCTAAGTCATCTTCTTTCACTCGCT +
Preference number: 6 (lower is better)
Translates to: HGSHLQSFVSVG*EQHLSHLLSLA
Trigger: AGCGAGTGAAAGAAGATGACTTAGATGTTGTTCTCAGCCCACAGAGACGAAGCTTTGGAGGTGGCTGCCATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000125637.8
ENSMUST00000179770.8
CDS GCA 72 bp CATCTTCTTTCACTCGCTCTCGTGGATCTGCTATTCTaGGCACCAGAGAAGGTCGATCGGATTCTGACTCTT +
Preference number: 6 (lower is better)
Translates to: HLLSLALVDLLF*APEKVDRILTL
Trigger: AAGAGTCAGAATCCGATCGACCTTCTCTGGTGCGCAGAATAGCAGATCCACGAGAGCGAGTGAAAGAAGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000125637.8
ENSMUST00000179770.8
CDS CCA 72 bp CAAAGCCAGTCAGCTCTATGGTTTCAGACTGACTGGTaGGTCCAGCTGAAAACCATTCTGGTTCTTCCTCAG +
Preference number: 6 (lower is better)
Translates to: QSQSALWFQTDW*VQLKTILVLPQ
Trigger: CTGAGGAAGAACCAGAATGGTTTTCAGCTGGACCCACCAGTCAGTCTGAAACCATAGAGCTGACTGGCTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS CCA 72 bp TTGCGCATGCCTTGGAATGGATCTCCAAGTAGTTGCTaGGGTCCTGAAGGGAAACCTATTGGTGATGGTATC +
Preference number: 6 (lower is better)
Translates to: LRMPWNGSPSSC*GPEGKPIGDGI
Trigger: GATACCATCACCAATAGGTTTCCCTTCAGGACCCCAGCAACTACTTGGAGATCCATTCCAAGGCATGCGCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000135223.2
ENSMUST00000179770.8
CDS CAA 72 bp CCACTATGCCTTCCTTCACAGAGGCAGTCCGTCGCCTaGTTCTTTTTCTGCCTTTGTGATCCTCCTCTAGAA +
Preference number: 6 (lower is better)
Translates to: PLCLPSQRQSVA*FFFCLCDPPLE
Trigger: TTCTAGAGGAGGATCACAAAGGCAGAAAAAGAACAAGGCGACGGACTGCCTCTGTGAAGGAAGGCATAGTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS CAA 72 bp CTGCTGAGGCTGCTTGAGTTCGAAATACCTGTGACATaGGAGGAGAGGGCGCTCTTTGGCTCAATAAAGATG +
Preference number: 6 (lower is better)
Translates to: LLRLLEFEIPVT*EERALFGSIKM
Trigger: CATCTTTATTGAGCCAAAGAGCGCCCTCTCCTCCAATGTCACAGGTATTTCGAACTCAAGCAGCCTCAGCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS CAA 90 bp GTAGTTGCTGGGGTCCTGAAGGGAAACCTATTGGTGATGGTATCCTaGGATGAAGGTAGTCTGCTGAGGCTGCTTGAGTTCGAAATACCT +
Preference number: 6 (lower is better)
Translates to: VVAGVLKGNLLVMVS*DEGSLLRLLEFEIP
Trigger: AGGTATTTCGAACTCAAGCAGCCTCAGCAGACTACCTTCATCCAAGGATACCATCACCAATAGGTTTCCCTTCAGGACCCCAGCAACTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000135223.2
ENSMUST00000179770.8
CDS TCA 72 bp TCTCTCAAGTCTCGCAGGTCCTTATCACTGAGACGGTaGTCCTTTTCAAAGGCCCGGGCAGAAATTATCCTT +
Preference number: 6 (lower is better)
Translates to: SLKSRRSLSLRR*SFSKARAEIIL
Trigger: AAGGATAATTTCTGCCCGGGCCTTTGAAAAGGATCACCGTCTCAGTGATAAGGACCTGCGAGACTTGAGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000125637.8
ENSMUST00000179770.8
CDS TCA 72 bp GGATTGGATGACAGCAGGTTCTCTTCGCTGGTCTTCTaGGTATCCTCTTTACCATCACCAGGAACCACCATT +
Preference number: 6 (lower is better)
Translates to: GLDDSRFSSLVF*VSSLPSPGTTI
Trigger: AATGGTGGTTCCTGGTGATGGTAAAGAGGATACTCAGAAGACCAGCGAAGAGAACCTGCTGTCATCCAATCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS CCA 72 bp CATCAAAGCCAGTCAGCTCTATGGTTTCAGACTGACTaGTGGGTCCAGCTGAAAACCATTCTGGTTCTTCCT +
Preference number: 6 (lower is better)
Translates to: HQSQSALWFQTD*WVQLKTILVLP
Trigger: AGGAAGAACCAGAATGGTTTTCAGCTGGACCCACCAGTCAGTCTGAAACCATAGAGCTGACTGGCTTTGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS CCA 72 bp TGGGTATGGGATTGGATGACAGCAGGTTCTCTTCGCTaGTCTTCTGAGTATCCTCTTTACCATCACCAGGAA +
Preference number: 6 (lower is better)
Translates to: WVWDWMTAGSLR*SSEYPLYHHQE
Trigger: TTCCTGGTGATGGTAAAGAGGATACTCAGAAGACCAGCGAAGAGAACCTGCTGTCATCCAATCCCATACCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS TCA 72 bp TCGCAGCACTCAGGGTCTCCTCTAAATGTTCTGCCATaGAGGGAGTTGAATTCTTCATTTGCTGGTCCACTT +
Preference number: 6 (lower is better)
Translates to: SQHSGSPLNVLP*RELNSSFAGPL
Trigger: AAGTGGACCAGCAAATGAAGAATTCAACTCCCTTCATGGCAGAACATTTAGAGGAGACCCTGAGTGCTGCGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000135223.2
ENSMUST00000179770.8
CDS CAA 90 bp AGCTTGTTGAATGCAGTCATATCTCCATCTTTCTTGAGCTGTCTATaGCTACTCGCAGCACTCAGGGTCTCCTCTAAATGTTCTGCCATG +
Preference number: 6 (lower is better)
Translates to: SLLNAVISPSFLSCL*LLAALRVSSKCSAM
Trigger: CATGGCAGAACATTTAGAGGAGACCCTGAGTGCTGCGAGTAGCAATAGACAGCTCAAGAAAGATGGAGATATGACTGCATTCAACAAGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000135223.2
ENSMUST00000179770.8
CDS CAA 90 bp GGCTGGGTAGGCAAAGTTCCACTTGCCTTCATGGTGTTCACTAGCTaGTTGAATGCAGTCATATCTCCATCTTTCTTGAGCTGTCTATTG +
Preference number: 6 (lower is better)
Translates to: GWVGKVPLAFMVFTS*LNAVISPSFLSCLL
Trigger: CAATAGACAGCTCAAGAAAGATGGAGATATGACTGCATTCAACAAGCTAGTGAACACCATGAAGGCAAGTGGAACTTTGCCTACCCAGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000135223.2
ENSMUST00000179770.8
CDS TCA 72 bp TTATCATCAAAGCCAGTCAGCTCTATGGTTTCAGACTaGCTGGTGGGTCCAGCTGAAAACCATTCTGGTTCT +
Preference number: 6 (lower is better)
Translates to: LSSKPVSSMVSD*LVGPAENHSGS
Trigger: AGAACCAGAATGGTTTTCAGCTGGACCCACCAGTCAGTCTGAAACCATAGAGCTGACTGGCTTTGATGATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000179770.8
CDS TCA 72 bp AGAAGAGTCTTGATCAGTATTGGGTATGGGATTGGATaGCAGCAGGTTCTCTTCGCTGGTCTTCTGAGTATC +
Preference number: 6 (lower is better)
Translates to: RRVLISIGYGIG*QQVLFAGLLSI
Trigger: GATACTCAGAAGACCAGCGAAGAGAACCTGCTGTCATCCAATCCCATACCCAATACTGATCAAGACTCTTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS CAA 72 bp ACTAGCTTGTTGAATGCAGTCATATCTCCATCTTTCTaGAGCTGTCTATTGCTACTCGCAGCACTCAGGGTC +
Preference number: 6 (lower is better)
Translates to: TSLLNAVISPSF*SCLLLLAALRV
Trigger: GACCCTGAGTGCTGCGAGTAGCAATAGACAGCTCAAGAAAGATGGAGATATGACTGCATTCAACAAGCTAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000135223.2
ENSMUST00000179770.8
CDS CAA 72 bp AGGTGTTTTCCTTCCTGCTGTTTTAGGTCGATAATCTaGTTCTTTGGTATAACGGCTGGTCTGGGAGAGTGG +
Preference number: 6 (lower is better)
Translates to: RCFPSCCFRSII*FFGITAGLGEW
Trigger: CCACTCTCCCAGACCAGCCGTTATACCAAAGAACAAGATTATCGACCTAAAACAGCAGGAAGGAAAACACCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000179770.8
CDS CAA 90 bp ATGGTGTTCACTAGCTTGTTGAATGCAGTCATATCTCCATCTTTCTaGAGCTGTCTATTGCTACTCGCAGCACTCAGGGTCTCCTCTAAA +
Preference number: 6 (lower is better)
Translates to: MVFTSLLNAVISPSF*SCLLLLAALRVSSK
Trigger: TTTAGAGGAGACCCTGAGTGCTGCGAGTAGCAATAGACAGCTCAAGAAAGATGGAGATATGACTGCATTCAACAAGCTAGTGAACACCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000135223.2
ENSMUST00000179770.8
CDS CAA 72 bp CTGTCATATTTTTCAGAGAGGCATGATGGCCTCTGCTaGGAGTATGGACGTTCTTTTATATCCAAGAGCTCC +
Preference number: 6 (lower is better)
Translates to: LSYFSERHDGLC*EYGRSFISKSS
Trigger: GGAGCTCTTGGATATAAAAGAACGTCCATACTCCAAGCAGAGGCCATCATGCCTCTCTGAAAAATATGACAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000125637.8
ENSMUST00000179770.8
CDS CAA 72 bp AATGCAGTCATATCTCCATCTTTCTTGAGCTGTCTATaGCTACTCGCAGCACTCAGGGTCTCCTCTAAATGT +
Preference number: 6 (lower is better)
Translates to: NAVISPSFLSCL*LLAALRVSSKC
Trigger: ACATTTAGAGGAGACCCTGAGTGCTGCGAGTAGCAATAGACAGCTCAAGAAAGATGGAGATATGACTGCATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000135223.2
ENSMUST00000179770.8
CDS CAA 90 bp ACACCATCACTGTCATATTTTTCAGAGAGGCATGATGGCCTCTGCTaGGAGTATGGACGTTCTTTTATATCCAAGAGCTCCTCTTTCGTA +
Preference number: 6 (lower is better)
Translates to: TPSLSYFSERHDGLC*EYGRSFISKSSSFV
Trigger: TACGAAAGAGGAGCTCTTGGATATAAAAGAACGTCCATACTCCAAGCAGAGGCCATCATGCCTCTCTGAAAAATATGACAGTGATGGTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000125637.8
ENSMUST00000179770.8
CDS CAA 90 bp TGGGTAGGCAAAGTTCCACTTGCCTTCATGGTGTTCACTAGCTTGTaGAATGCAGTCATATCTCCATCTTTCTTGAGCTGTCTATTGCTA +
Preference number: 6 (lower is better)
Translates to: WVGKVPLAFMVFTSL*NAVISPSFLSCLLL
Trigger: TAGCAATAGACAGCTCAAGAAAGATGGAGATATGACTGCATTCAACAAGCTAGTGAACACCATGAAGGCAAGTGGAACTTTGCCTACCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000135223.2
ENSMUST00000179770.8
CDS CCA 72 bp TGTCATATTTTTCAGAGAGGCATGATGGCCTCTGCTTaGAGTATGGACGTTCTTTTATATCCAAGAGCTCCT +
Preference number: 6 (lower is better)
Translates to: CHIFQRGMMASA*SMDVLLYPRAP
Trigger: AGGAGCTCTTGGATATAAAAGAACGTCCATACTCCAAGCAGAGGCCATCATGCCTCTCTGAAAAATATGACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000020734.11
ENSMUST00000110048.8
ENSMUST00000110049.8
ENSMUST00000120721.9
ENSMUST00000125637.8
ENSMUST00000179770.8