Pregenerated sensors for EIF4B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000058655Ensembl transcript IDs: ENSMUST00000169681.3, ENSMUST00000229400.2
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCGATTTGCTGTGCCTACTGCTGCAGCACGGGACATCAGTGCTCCTaGACAGCAGGCCTAGGACCAAGGTATCCTCTGTCTGCAGGTACC | + |
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Preference number: 1 (lower is better) Translates to: AICCAYCCSTGHQCS*TAGLGPRYPLSAGT Trigger: GGTACCTGCAGACAGAGGATACCTTGGTCCTAGGCCTGCTGTGCAGGAGCACTGATGTCCCGTGCTGCAGCAGTAGGCACAGCAAATCGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169681.3 |
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| 3UTR GCA 90 bp | TCAGTGCTCCTGCACAGCAGGCCTAGGACCAAGGTATCCTCTGTCTaGAGGTACCTGACTACCCACAACAGGGAGGCTCGCCATCTTTGG | + |
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Preference number: 1 (lower is better) Translates to: SVLLHSRPRTKVSSV*RYLTTHNREARHLW Trigger: CCAAAGATGGCGAGCCTCCCTGTTGTGGGTAGTCAGGTACCTGCAGACAGAGGATACCTTGGTCCTAGGCCTGCTGTGCAGGAGCACTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169681.3 |
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| 3UTR CCA 90 bp | GGCTTGCTTGAGAAAAGCAGCGAGTCCTCAGGCCATGGCTTTTTGTaGCTAAGATACAGTGTCTGTGGGAGGTGTGTGACTCACAGACAG | + |
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Preference number: 1 (lower is better) Translates to: GLLEKSSESSGHGFL*LRYSVCGRCVTHRQ Trigger: CTGTCTGTGAGTCACACACCTCCCACAGACACTGTATCTTAGCCACAAAAAGCCATGGCCTGAGGACTCGCTGCTTTTCTCAAGCAAGCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000169681.3 |
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| 3UTR-3UTR TCA 90 bp | CAGTGCTCCTGCACAGCAGGCCTAGGACCAAGGTATCCTCTGTCTGCAGGTACCACTCACTGGCTTGCTTaGGAAAAGCAGCGAGTCCTC | + |
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Preference number: 2 (lower is better) Translates to: QCSCTAGLGPRYPLSAGTTHWLA*EKQRVL Trigger: GAGGACTCGCTGCTTTTCTCAAGCAAGCCAGTGAGT...GGTACCTGCAGACAGAGGATACCTTGGTCCTAGGCCTGCTGTGCAGGAGCACTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169681.3 |
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| 3UTR-3UTR GCA 90 bp | TGTGCCTACTGCTGCAGCACGGGACATCAGTGCTCCTGCACAGCAGGCCTAGGACTGCCTCTCTGTCACTaGAATTCTGCTGAATGGAGC | + |
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Preference number: 2 (lower is better) Translates to: CAYCCSTGHQCSCTAGLGLPLCH*NSAEWS Trigger: GCTCCATTCAGCAGAATTGCAGTGACAGAGAGGCAG...TCCTAGGCCTGCTGTGCAGGAGCACTGATGTCCCGTGCTGCAGCAGTAGGCACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169681.3 |
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| 3UTR-3UTR CCA 90 bp | TGTGCCTACTGCTGCAGCACGGGACATCAGTGCTCCTGCACAGCAGGCCTAGGAAGTTTCCGTTCATCTTaGTCCCCAAGCGGGAACTAC | + |
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Preference number: 2 (lower is better) Translates to: CAYCCSTGHQCSCTAGLGSFRSS*SPSGNY Trigger: GTAGTTCCCGCTTGGGGACCAAGATGAACGGAAACT...TCCTAGGCCTGCTGTGCAGGAGCACTGATGTCCCGTGCTGCAGCAGTAGGCACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169681.3 |
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| 3UTR-3UTR GCA 90 bp | TACTGCTGCAGCACGGGACATCAGTGCTCCTGCACAGCAGGCCTAGGACCAAGGTGCACCTTTTTCTACTaGCTAACTGATGTGACTGCC | + |
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Preference number: 2 (lower is better) Translates to: YCCSTGHQCSCTAGLGPRCTFFY*LTDVTA Trigger: GGCAGTCACATCAGTTAGGCAGTAGAAAAAGGTGCA...CCTTGGTCCTAGGCCTGCTGTGCAGGAGCACTGATGTCCCGTGCTGCAGCAGTA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169681.3 |
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| 3UTR CAA 90 bp | ACTGGCTTGCTTGAGAAAAGCAGCGAGTCCTCAGGCCATGGCTTTTaGTGGCTAAGATACAGTGTCTGTGGGAGGTGTGTGACTCACAGA | + |
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Preference number: 2 (lower is better) Translates to: TGLLEKSSESSGHGF*WLRYSVCGRCVTHR Trigger: TCTGTGAGTCACACACCTCCCACAGACACTGTATCTTAGCCACAAAAAGCCATGGCCTGAGGACTCGCTGCTTTTCTCAAGCAAGCCAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169681.3 |
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| 3UTR-3UTR TCA 90 bp | TGGGAGGCTAAGTGTCATGGAGACCATGAGATGACCAGAGTGACAAGGTTTTCATCACTGCAATTCTGCTaGATGGAGCCCCAGGCACTA | + |
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Preference number: 2 (lower is better) Translates to: WEAKCHGDHEMTRVTRFSSLQFC*MEPQAL Trigger: TAGTGCCTGGGGCTCCATTCAGCAGAATTGCAGTGA...TGAAAACCTTGTCACTCTGGTCATCTCATGGTCTCCATGACACTTAGCCTCCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169681.3 |
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| 3UTR-3UTR GCA 90 bp | GAGCAAAGTAGGAGAGTGGGACAAAACAGCTGTCTTCGGATGCAACTATCTGGAGAAAACTCACTGGCTTaGTTGAGAAAAGCAGCGAGT | + |
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Preference number: 2 (lower is better) Translates to: EQSRRVGQNSCLRMQLSGENSLA*LRKAAS Trigger: ACTCGCTGCTTTTCTCAAGCAAGCCAGTGAGTTTTC...TCCAGATAGTTGCATCCGAAGACAGCTGTTTTGTCCCACTCTCCTACTTTGCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000169681.3 |
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| 3UTR-3UTR GCA 90 bp | ACTTCTGTTCCAAAGCACTACCAATTTCTATTTATGTCAGGTGTAGCACAAGTCCTCCCATTTCCCAAGTaGTCAGGGCTAGGGTTAGGA | + |
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Preference number: 2 (lower is better) Translates to: TSVPKHYQFLFMSGVAQVLPFPK*SGLGLG Trigger: TCCTAACCCTAGCCCTGAGCACTTGGGAAATGGGAG...GACTTGTGCTACACCTGACATAAATAGAAATTGGTAGTGCTTTGGAACAGAAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229400.2 |
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| 3UTR-3UTR CCA 90 bp | TGGGAGGCTAAGTGTCATGGAGACCATGAGATGACCAGAGTGACAAGGTTTTCACACACAGTAACTGCTTaGTATTGTCAGACACAACTT | + |
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Preference number: 2 (lower is better) Translates to: WEAKCHGDHEMTRVTRFSHTVTA*YCQTQL Trigger: AAGTTGTGTCTGACAATACCAAGCAGTTACTGTGTG...TGAAAACCTTGTCACTCTGGTCATCTCATGGTCTCCATGACACTTAGCCTCCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169681.3 |
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| 3UTR-3UTR TCA 90 bp | GGTCACATACATTATAAACAAGCACCAGCGTGGGGCTCCAGTGAGGGAGATTTATTCCTCATCCAGAAATaGCCATTCTATGTATGTGTT | + |
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Preference number: 2 (lower is better) Translates to: GHIHYKQAPAWGSSEGDLFLIQK*PFYVCV Trigger: AACACATACATAGAATGGTCATTTCTGGATGAGGAA...TAAATCTCCCTCACTGGAGCCCCACGCTGGTGCTTGTTTATAATGTATGTGACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169681.3 |
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| 3UTR-3UTR GCA 90 bp | TCCAAAGCACTACCAATTTCTATTTATGTCAGGTGTAGCACAAGTCTTTTTGAATTACACTCTGTAGACTaGTCCACCCCACCCAATAAA | + |
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Preference number: 2 (lower is better) Translates to: SKALPISIYVRCSTSLFELHSVD*STPPNK Trigger: TTTATTGGGTGGGGTGGAGCAGTCTACAGAGTGTAA...TTCAAAAAGACTTGTGCTACACCTGACATAAATAGAAATTGGTAGTGCTTTGGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000229400.2 |
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| 3UTR GCA 72 bp | TGTGCCTACTGCTGCAGCACGGGACATCAGTGCTCCTaGACAGCAGGCCTAGGACCAAGGTATCCTCTGTCT | + |
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Preference number: 3 (lower is better) Translates to: CAYCCSTGHQCS*TAGLGPRYPLS Trigger: AGACAGAGGATACCTTGGTCCTAGGCCTGCTGTGCAGGAGCACTGATGTCCCGTGCTGCAGCAGTAGGCACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169681.3 |
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| 3UTR-3UTR CAA 90 bp | TACTGCTGCAGCACGGGACATCAGTGCTCCTGCACAGCAGGCCTAGGACCAAGGAACTCACTGGCTTGCTaGAGAAAAGCAGCGAGTCCT | + |
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Preference number: 3 (lower is better) Translates to: YCCSTGHQCSCTAGLGPRNSLAC*RKAASP Trigger: AGGACTCGCTGCTTTTCTCAAGCAAGCCAGTGAGTT...CCTTGGTCCTAGGCCTGCTGTGCAGGAGCACTGATGTCCCGTGCTGCAGCAGTA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169681.3 |
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| 3UTR CCA 72 bp | AGTGTCTGTGGGAGGTGTGTGACTCACAGACAGCTCTaGGAGGCTAAGTGTCATGGAGACCATGAGATGACC | + |
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Preference number: 3 (lower is better) Translates to: SVCGRCVTHRQL*EAKCHGDHEMT Trigger: GGTCATCTCATGGTCTCCATGACACTTAGCCTCCCAGAGCTGTCTGTGAGTCACACACCTCCCACAGACACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169681.3 |
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| 3UTR-3UTR CAA 90 bp | GAGCAAAGTAGGAGAGTGGGACAAAACAGCTGTCTTCGGATGCAACTATCTGGAACCCAAGCCCATCAGTaGAGGCTGAAAGCTGCAGGA | + |
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Preference number: 3 (lower is better) Translates to: EQSRRVGQNSCLRMQLSGTQAHQ*RLKAAG Trigger: TCCTGCAGCTTTCAGCCTCAACTGATGGGCTTGGGT...TCCAGATAGTTGCATCCGAAGACAGCTGTTTTGTCCCACTCTCCTACTTTGCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169681.3 |
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| 3UTR CCA 72 bp | GAGAAAAGCAGCGAGTCCTCAGGCCATGGCTTTTTGTaGCTAAGATACAGTGTCTGTGGGAGGTGTGTGACT | + |
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Preference number: 3 (lower is better) Translates to: EKSSESSGHGFL*LRYSVCGRCVT Trigger: AGTCACACACCTCCCACAGACACTGTATCTTAGCCACAAAAAGCCATGGCCTGAGGACTCGCTGCTTTTCTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000169681.3 |
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| 3UTR CCA 72 bp | AAGCTTTCCAAACCACGATTGAGTTTCCGTTCATCTTaGTCCCCAAGCGGGAACTACTTGTTAGTGCCCCGT | + |
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Preference number: 3 (lower is better) Translates to: KLSKPRLSFRSS*SPSGNYLLVPR Trigger: ACGGGGCACTAACAAGTAGTTCCCGCTTGGGGACCAAGATGAACGGAAACTCAATCGTGGTTTGGAAAGCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169681.3 |
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| 3UTR-3UTR CAA 90 bp | TGGGAGGCTAAGTGTCATGGAGACCATGAGATGACCAGAGTGACAAGGTTTTCAAATCTCACTTCTGCTTaGCACCTTTTTCTACTGCCT | + |
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Preference number: 3 (lower is better) Translates to: WEAKCHGDHEMTRVTRFSNLTSA*HLFLLP Trigger: AGGCAGTAGAAAAAGGTGCAAAGCAGAAGTGAGATT...TGAAAACCTTGTCACTCTGGTCATCTCATGGTCTCCATGACACTTAGCCTCCCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000169681.3 |
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| 3UTR GCA 72 bp | GTAGAAATCTCACTTCTGCTTTGCACCTTTTTCTACTaGCTAACTGATGTGACTGCCTCTCTGTCACTGCAA | + |
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Preference number: 3 (lower is better) Translates to: VEISLLLCTFFY*LTDVTASLSLQ Trigger: TTGCAGTGACAGAGAGGCAGTCACATCAGTTAGGCAGTAGAAAAAGGTGCAAAGCAGAAGTGAGATTTCTAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169681.3 |
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| CDS-3UTR CCA 90 bp | TGTGCCTACTGCTGCAGCACGGGACATCAGTGCTCCTGCACAGCAGGCCTAGGAGTCCATGTCTCTGCGTaGGCCGTCCCGATATCCGTC | + |
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Preference number: 4 (lower is better) Translates to: CAYCCSTGHQCSCTAGLGVHVSA*AVPISV Trigger: GACGGATATCGGGACGGCCCACGCAGAGACATGGAC...TCCTAGGCCTGCTGTGCAGGAGCACTGATGTCCCGTGCTGCAGCAGTAGGCACA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169681.3 |
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| CDS-3UTR GCA 90 bp | GAGCAAAGTAGGAGAGTGGGACAAAACAGCTGTCTTCGGATGCAACTATCTGGAGGCTGGACTGGGAGGTaGTGGCGGAGGCGTCATCCT | + |
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Preference number: 4 (lower is better) Translates to: EQSRRVGQNSCLRMQLSGGWTGR*WRRRHP Trigger: AGGATGACGCCTCCGCCAGCACCTCCCAGTCCAGCC...TCCAGATAGTTGCATCCGAAGACAGCTGTTTTGTCCCACTCTCCTACTTTGCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169681.3 |
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| 3UTR CAA 72 bp | AGTTTCCGTTCATCTTGGTCCCCAAGCGGGAACTACTaGTTAGTGCCCCGTAGACTCACTCCCAACTACCCC | + |
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Preference number: 4 (lower is better) Translates to: SFRSSWSPSGNY*LVPRRLTPNYP Trigger: GGGGTAGTTGGGAGTGAGTCTACGGGGCACTAACAAGTAGTTCCCGCTTGGGGACCAAGATGAACGGAAACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169681.3 |
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| CDS-3UTR GCA 90 bp | GAGCAAAGTAGGAGAGTGGGACAAAACAGCTGTCTTCGGATGCAACTATCTGGATCCAAAGATGGAGGCTaGCCGGCTGGACTGGGAGGT | + |
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Preference number: 4 (lower is better) Translates to: EQSRRVGQNSCLRMQLSGSKDGG*PAGLGG Trigger: ACCTCCCAGTCCAGCCGGGCAGCCTCCATCTTTGGA...TCCAGATAGTTGCATCCGAAGACAGCTGTTTTGTCCCACTCTCCTACTTTGCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169681.3 |
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| CDS-3UTR CCA 90 bp | GCTCCAGTGAGGGAGATTTATAGAAACCTTACATCCCATTCAAGGCTGAAGACCCTGCAGCTTCCAGCTTaGCCTTGTGTGGCACCCACC | + |
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Preference number: 4 (lower is better) Translates to: APVREIYRNLTSHSRLKTLQLPA*PCVAPT Trigger: GGTGGGTGCCACACAAGGCCAAGCTGGAAGCTGCAG...GGTCTTCAGCCTTGAATGGGATGTAAGGTTTCTATAAATCTCCCTCACTGGAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169681.3 |
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| CDS-3UTR CCA 90 bp | TGGGAGGCTAAGTGTCATGGAGACCATGAGATGACCAGAGTGACAAGGTTTTCACATCAAAACTGTCTGTaGTGGGACGGGCCCTCCAGT | + |
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Preference number: 4 (lower is better) Translates to: WEAKCHGDHEMTRVTRFSHQNCL*WDGPSS Trigger: ACTGGAGGGCCCGTCCCACCACAGACAGTTTTGATG...TGAAAACCTTGTCACTCTGGTCATCTCATGGTCTCCATGACACTTAGCCTCCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169681.3 |
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| CDS-3UTR CCA 90 bp | GGTCACATACATTATAAACAAGCACCAGCGTGGGGCTCCAGTGAGGGAGATTTACAGCTTGGCCTTGTGTaGCACCCACCACATCCACTT | + |
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Preference number: 4 (lower is better) Translates to: GHIHYKQAPAWGSSEGDLQLGLV*HPPHPL Trigger: AAGTGGATGTGGTGGGTGCCACACAAGGCCAAGCTG...TAAATCTCCCTCACTGGAGCCCCACGCTGGTGCTTGTTTATAATGTATGTGACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169681.3 |
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| CDS-3UTR CCA 90 bp | GGTCACATACATTATAAACAAGCACCAGCGTGGGGCTCCAGTGAGGGAGATTTATCCAAGTCCTTCCAGTaGTCTCTGCTCCCTCCATCC | + |
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Preference number: 4 (lower is better) Translates to: GHIHYKQAPAWGSSEGDLSKSFQ*SLLPPS Trigger: GGATGGAGGGAGCAGAGACCACTGGAAGGACTTGGA...TAAATCTCCCTCACTGGAGCCCCACGCTGGTGCTTGTTTATAATGTATGTGACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169681.3 |
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| 3UTR CAA 72 bp | CTTGAGAAAAGCAGCGAGTCCTCAGGCCATGGCTTTTaGTGGCTAAGATACAGTGTCTGTGGGAGGTGTGTG | + |
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Preference number: 4 (lower is better) Translates to: LEKSSESSGHGF*WLRYSVCGRCV Trigger: CACACACCTCCCACAGACACTGTATCTTAGCCACAAAAAGCCATGGCCTGAGGACTCGCTGCTTTTCTCAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169681.3 |
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| CDS-3UTR GCA 90 bp | ACTTCTGTTCCAAAGCACTACCAATTTCTATTTATGTCAGGTGTAGCACAAGTCGGCTGGACTGGGAGGTaGTGGCGGAGGCGTCATCCT | + |
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Preference number: 4 (lower is better) Translates to: TSVPKHYQFLFMSGVAQVGWTGR*WRRRHP Trigger: AGGATGACGCCTCCGCCAGCACCTCCCAGTCCAGCC...GACTTGTGCTACACCTGACATAAATAGAAATTGGTAGTGCTTTGGAACAGAAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229400.2 |
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| CDS-3UTR GCA 90 bp | GAGCAAAGTAGGAGAGTGGGACAAAACAGCTGTCTTCGGATGCAACTATCTGGATCCTTCGTGTATTTCTaGCAGATGTGGCTGAGGCCC | + |
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Preference number: 4 (lower is better) Translates to: EQSRRVGQNSCLRMQLSGSFVYF*QMWLRP Trigger: GGGCCTCAGCCACATCTGGCAGAAATACACGAAGGA...TCCAGATAGTTGCATCCGAAGACAGCTGTTTTGTCCCACTCTCCTACTTTGCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169681.3 |
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| 3UTR CAA 72 bp | CAGAAATCAAAGATAGCACAGAGAAAACTCACTGGCTaGCTTGAGAAAAGCAGCGAGTCCTCAGGCCATGGC | + |
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Preference number: 4 (lower is better) Translates to: QKSKIAQRKLTG*LEKSSESSGHG Trigger: GCCATGGCCTGAGGACTCGCTGCTTTTCTCAAGCAAGCCAGTGAGTTTTCTCTGTGCTATCTTTGATTTCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169681.3 |
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| CDS-3UTR CCA 90 bp | ACTTCTGTTCCAAAGCACTACCAATTTCTATTTATGTCAGGTGTAGCACAAGTCGTCCATGTCTCTGCGTaGGCCGTCCCGATATCCGTC | + |
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Preference number: 4 (lower is better) Translates to: TSVPKHYQFLFMSGVAQVVHVSA*AVPISV Trigger: GACGGATATCGGGACGGCCCACGCAGAGACATGGAC...GACTTGTGCTACACCTGACATAAATAGAAATTGGTAGTGCTTTGGAACAGAAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229400.2 |
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| CDS-3UTR GCA 90 bp | TCCAAAGCACTACCAATTTCTATTTATGTCAGGTGTAGCACAAGTCTTTTTGAATCCAAAGATGGAGGCTaGCCGGCTGGACTGGGAGGT | + |
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Preference number: 4 (lower is better) Translates to: SKALPISIYVRCSTSLFESKDGG*PAGLGG Trigger: ACCTCCCAGTCCAGCCGGGCAGCCTCCATCTTTGGA...TTCAAAAAGACTTGTGCTACACCTGACATAAATAGAAATTGGTAGTGCTTTGGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000229400.2 |
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| CDS-3UTR TCA 90 bp | GCTCCAGTGAGGGAGATTTATAGAAACCTTACATCCCATTCAAGGCTGAAGACCTTAGAGGTTGGAGAGTaGCAGTCTTCTTCTTTATTG | + |
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Preference number: 4 (lower is better) Translates to: APVREIYRNLTSHSRLKTLEVGE*QSSSLL Trigger: CAATAAAGAAGAAGACTGTCACTCTCCAACCTCTAA...GGTCTTCAGCCTTGAATGGGATGTAAGGTTTCTATAAATCTCCCTCACTGGAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169681.3 |
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| CDS-3UTR CCA 90 bp | TCCAAAGCACTACCAATTTCTATTTATGTCAGGTGTAGCACAAGTCTTTTTGAACATCAAAACTGTCTGTaGTGGGACGGGCCCTCCAGT | + |
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Preference number: 4 (lower is better) Translates to: SKALPISIYVRCSTSLFEHQNCL*WDGPSS Trigger: ACTGGAGGGCCCGTCCCACCACAGACAGTTTTGATG...TTCAAAAAGACTTGTGCTACACCTGACATAAATAGAAATTGGTAGTGCTTTGGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000229400.2 |
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| CDS-3UTR CAA 90 bp | TGTGCCTACTGCTGCAGCACGGGACATCAGTGCTCCTGCACAGCAGGCCTAGGAGGAGCGCTTCGAGGCTaGAGGTTCAGTCTGGGTCTC | + |
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Preference number: 5 (lower is better) Translates to: CAYCCSTGHQCSCTAGLGGALRG*RFSLGL Trigger: GAGACCCAGACTGAACCTCAAGCCTCGAAGCGCTCC...TCCTAGGCCTGCTGTGCAGGAGCACTGATGTCCCGTGCTGCAGCAGTAGGCACA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169681.3 |
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| CDS-3UTR CAA 90 bp | TGTGCCTACTGCTGCAGCACGGGACATCAGTGCTCCTGCACAGCAGGCCTAGGAGCTTCCAGCTTGGCCTaGTGTGGCACCCACCACATC | + |
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Preference number: 5 (lower is better) Translates to: CAYCCSTGHQCSCTAGLGASSLA*CGTHHI Trigger: GATGTGGTGGGTGCCACACAAGGCCAAGCTGGAAGC...TCCTAGGCCTGCTGTGCAGGAGCACTGATGTCCCGTGCTGCAGCAGTAGGCACA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169681.3 |
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| CDS-3UTR CAA 90 bp | TGGGAGGCTAAGTGTCATGGAGACCATGAGATGACCAGAGTGACAAGGTTTTCAGCTGCAGCTTCCAGCTaGGCCTTGTGTGGCACCCAC | + |
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Preference number: 5 (lower is better) Translates to: WEAKCHGDHEMTRVTRFSAAASS*ALCGTH Trigger: GTGGGTGCCACACAAGGCCAAGCTGGAAGCTGCAGC...TGAAAACCTTGTCACTCTGGTCATCTCATGGTCTCCATGACACTTAGCCTCCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169681.3 |
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| CDS-3UTR CAA 90 bp | TCCAAAGCACTACCAATTTCTATTTATGTCAGGTGTAGCACAAGTCTTTTTGAAGGAGCGCTTCGAGGCTaGAGGTTCAGTCTGGGTCTC | + |
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Preference number: 5 (lower is better) Translates to: SKALPISIYVRCSTSLFEGALRG*RFSLGL Trigger: GAGACCCAGACTGAACCTCAAGCCTCGAAGCGCTCC...TTCAAAAAGACTTGTGCTACACCTGACATAAATAGAAATTGGTAGTGCTTTGGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000229400.2 |
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| CDS GCA 72 bp | ATCCTCGCCATCCACAGACAGAGCAGCGTACTTGCTTaGAGAGCTGAACTTAGAGGCTGGGTTCTCCTCAGG | + |
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Preference number: 6 (lower is better) Translates to: ILAIHRQSSVLA*RAELRGWVLLR Trigger: CCTGAGGAGAACCCAGCCTCTAAGTTCAGCTCTGCAAGCAAGTACGCTGCTCTGTCTGTGGATGGCGAGGAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169681.3 |
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