Pregenerated sensors for EIF4A3L1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000094973Ensembl transcript IDs: ENSMUST00000077886.7, ENSMUST00000204530.2, ENSMUST00000204966.2
Found 37 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS-3UTR GCA 90 bp | GCGGAGGCTGAGGGTCTTCCCGAGGGGCTCCGAGAAGACAGTTCATATCAACCACCTCCCCGACATTGGTaGCCCCAACGCAGGCATGGC | + |
Preference number: 4 (lower is better) Translates to: AEAEGLPEGLREDSSYQPPPRHW*PQRRHG Trigger: GCCATGCCTGCGTTGGGGGCACCAATGTCGGGGAGG...TGGTTGATATGAACTGTCTTCTCGGAGCCCCTCGGGAAGACCCTCAGCCTCCGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000204530.2 |
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CDS-3UTR CCA 90 bp | ATTGGGTCATTTACACGTGCATTAGAAAAGATGGCGGAGGCTGAGGGTCTTCCCCCTCTCGCAGGCCCATaGTGTCGAACGTGGGGGTCG | + |
Preference number: 4 (lower is better) Translates to: IGSFTRALEKMAEAEGLPPLAGP*CRTWGS Trigger: CGACCCCCACGTTCGACACCATGGGCCTGCGAGAGG...GGGAAGACCCTCAGCCTCCGCCATCTTTTCTAATGCACGTGTAAATGACCCAAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000204530.2 |
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CDS-3UTR CCA 90 bp | AGATGGCGGAGGCTGAGGGTCTTCCCGAGGGGCTCCGAGAAGACAGTTCATATCCGAGAACGACCTGTGTaGCTGGTGGCAAATACCTGT | + |
Preference number: 4 (lower is better) Translates to: RWRRLRVFPRGSEKTVHIRERPV*LVANTC Trigger: ACAGGTATTTGCCACCAGCCACACAGGTCGTTCTCG...GATATGAACTGTCTTCTCGGAGCCCCTCGGGAAGACCCTCAGCCTCCGCCATCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204530.2 |
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CDS-3UTR GCA 90 bp | AGATGGCGGAGGCTGAGGGTCTTCCCGAGGGGCTCCGAGAAGACAGTTCATATCGCCAGACTGAGACTGTaGGATGACATCTCTCCCTTT | + |
Preference number: 4 (lower is better) Translates to: RWRRLRVFPRGSEKTVHIARLRL*DDISPF Trigger: AAAGGGAGAGATGTCATCGCACAGTCTCAGTCTGGC...GATATGAACTGTCTTCTCGGAGCCCCTCGGGAAGACCCTCAGCCTCCGCCATCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204530.2 |
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CDS-3UTR CCA 90 bp | GGGTCATTTACACGTGCATTAGAAAAGATGGCGGAGGCTGAGGGTCTTCCCGAGCGTCCACCTCCTCGCTaGTCTCGAACTCCACTTTGG | + |
Preference number: 4 (lower is better) Translates to: GSFTRALEKMAEAEGLPERPPPR*SRTPLW Trigger: CCAAAGTGGAGTTCGAGACCAGCGAGGAGGTGGACG...CTCGGGAAGACCCTCAGCCTCCGCCATCTTTTCTAATGCACGTGTAAATGACCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204530.2 |
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CDS-3UTR CCA 90 bp | ATTGGGTCATTTACACGTGCATTAGAAAAGATGGCGGAGGCTGAGGGTCTTCCCCCATGGTGTCGAACGTaGGGGTCGCGTCCACCTCCT | + |
Preference number: 4 (lower is better) Translates to: IGSFTRALEKMAEAEGLPPWCRT*GSRPPP Trigger: AGGAGGTGGACGCGACCCCCACGTTCGACACCATGG...GGGAAGACCCTCAGCCTCCGCCATCTTTTCTAATGCACGTGTAAATGACCCAAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000204530.2 |
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CDS-3UTR TCA 90 bp | GGGTCTTCCCGAGGGGCTCCGAGAAGACAGTTCATATCAACCAACCCCATTAAAATGATGAGGGACACCTaGGGGACATCCAGGCCTCGA | + |
Preference number: 4 (lower is better) Translates to: GSSRGAPRRQFISTNPIKMMRDT*GTSRPR Trigger: TCGAGGCCTGGATGTCCCTCAGGTGTCCCTCATCAT...TTTAATGGGGTTGGTTGATATGAACTGTCTTCTCGGAGCCCCTCGGGAAGACCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000204530.2 |
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CDS-3UTR TCA 90 bp | GGGTCTTCCCGAGGGGCTCCGAGAAGACAGTTCATATCAACCAACCCCATTAAAATCTCCAGGATCTCATaGGGCAGTGTGGCACTGACG | + |
Preference number: 4 (lower is better) Translates to: GSSRGAPRRQFISTNPIKISRIS*GSVALT Trigger: CGTCAGTGCCACACTGCCTCATGAGATCCTGGAGAT...TTTAATGGGGTTGGTTGATATGAACTGTCTTCTCGGAGCCCCTCGGGAAGACCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000204530.2 |
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CDS-3UTR TCA 90 bp | CTTCCCGAGGGGCTCCGAGAAGACAGTTCATATCAACCAACCCCATTAAATAGAAGACATCTGTGGAGATaGGCACCCGGCTGGCACCTG | + |
Preference number: 4 (lower is better) Translates to: LPEGLREDSSYQPTPLNRRHLWR*APGWHL Trigger: CAGGTGCCAGCCGGGTGCTCATCTCCACAGATGTCT...TCTATTTAATGGGGTTGGTTGATATGAACTGTCTTCTCGGAGCCCCTCGGGAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000204530.2 |
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CDS-3UTR GCA 90 bp | CTTCCCGAGGGGCTCCGAGAAGACAGTTCATATCAACCAACCCCATTAAATAGATGGGGCATATCTCCATaGATGGACGACACAGTGAAA | + |
Preference number: 4 (lower is better) Translates to: LPEGLREDSSYQPTPLNRWGISP*MDDTVK Trigger: TTTCACTGTGTCGTCCATGCATGGAGATATGCCCCA...TCTATTTAATGGGGTTGGTTGATATGAACTGTCTTCTCGGAGCCCCTCGGGAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000204530.2 |
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CDS-3UTR TCA 90 bp | CTTCCCGAGGGGCTCCGAGAAGACAGTTCATATCAACCAACCCCATTAAATAGAACTGAGACTGTGCGATaGCATCTCTCCCTTTCATTA | + |
Preference number: 4 (lower is better) Translates to: LPEGLREDSSYQPTPLNRTETVR*HLSLSL Trigger: TAATGAAAGGGAGAGATGTCATCGCACAGTCTCAGT...TCTATTTAATGGGGTTGGTTGATATGAACTGTCTTCTCGGAGCCCCTCGGGAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000204530.2 |
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CDS-3UTR TCA 90 bp | CTTCCCGAGGGGCTCCGAGAAGACAGTTCATATCAACCAACCCCATTAAATAGACATAGATCTGCTCCTTaGAACCTCTGTTCAACATCT | + |
Preference number: 4 (lower is better) Translates to: LPEGLREDSSYQPTPLNRHRSAP*NLCSTS Trigger: AGATGTTGAACAGAGGTTTCAAGGAGCAGATCTATG...TCTATTTAATGGGGTTGGTTGATATGAACTGTCTTCTCGGAGCCCCTCGGGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000204530.2 |
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CDS CCA 90 bp | AACCGTAGGCGTAGATGCCGCGCAGCAGGTCCTCTCGCAGGCCCATaGTGTCGAACGTGGGGGTCGCGTCCACCTCCTCGCTGGTCTCGA | + |
Preference number: 5 (lower is better) Translates to: NRRRRCRAAGPLAGP*CRTWGSRPPPRWSR Trigger: TCGAGACCAGCGAGGAGGTGGACGCGACCCCCACGTTCGACACCATGGGCCTGCGAGAGGACCTGCTGCGCGGCATCTACGCCTACGGTT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000077886.7 ENSMUST00000204530.2 ENSMUST00000204966.2 |
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CDS CCA 90 bp | AGATGCCGCGCAGCAGGTCCTCTCGCAGGCCCATGGTGTCGAACGTaGGGGTCGCGTCCACCTCCTCGCTGGTCTCGAACTCCACTTTGG | + |
Preference number: 5 (lower is better) Translates to: RCRAAGPLAGPWCRT*GSRPPPRWSRTPLW Trigger: CCAAAGTGGAGTTCGAGACCAGCGAGGAGGTGGACGCGACCCCCACGTTCGACACCATGGGCCTGCGAGAGGACCTGCTGCGCGGCATCT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000077886.7 ENSMUST00000204530.2 ENSMUST00000204966.2 |
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CDS-3UTR CAA 90 bp | GCTGAGGGTCTTCCCGAGGGGCTCCGAGAAGACAGTTCATATCAACCAACCCCAGTCATGCCGTCCTCTTaGAGCAGCCGCTTCCGCGCC | + |
Preference number: 5 (lower is better) Translates to: AEGLPEGLREDSSYQPTPVMPSS*SSRFRA Trigger: GGCGCGGAAGCGGCTGCTCAAAGAGGACGGCATGAC...TGGGGTTGGTTGATATGAACTGTCTTCTCGGAGCCCCTCGGGAAGACCCTCAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000204530.2 |
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CDS GCA 90 bp | CATGCTGCCCGTAGTCCAGCTTCCGGATGTCCTCCCCGACATTGGTaGCCCCAACGCAGGCATGGCACTGCACGTTCATGTAATCTCCCA | + |
Preference number: 5 (lower is better) Translates to: HAARSPASGCPPRHW*PQRRHGTARSCNLP Trigger: TGGGAGATTACATGAACGTGCAGTGCCATGCCTGCGTTGGGGGCACCAATGTCGGGGAGGACATCCGGAAGCTGGACTACGGGCAGCATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000077886.7 ENSMUST00000204530.2 ENSMUST00000204966.2 |
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CDS TCA 90 bp | ATCTCCCAGAGCGAGCAGACCCTGGATATCCAAGCACTGGAGCACTaGGATACTGAAGGTGGCCGTCTTGCCTGTGCCAGACTGAGACTG | + |
Preference number: 5 (lower is better) Translates to: ISQSEQTLDIQALEH*DTEGGRLACARLRL Trigger: CAGTCTCAGTCTGGCACAGGCAAGACGGCCACCTTCAGTATCTCAGTGCTCCAGTGCTTGGATATCCAGGGTCTGCTCGCTCTGGGAGAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204966.2 |
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CDS CCA 90 bp | CTCCCAGAGCGAGCAGACCCTTCTGAATCTGCACCGCTAACTCTCTaGTTGGAGCCAGGATCAAAGCTTGGGTTTCTCGAACCTGGATAT | + |
Preference number: 5 (lower is better) Translates to: LPERADPSESAPLTL*LEPGSKLGFLEPGY Trigger: ATATCCAGGTTCGAGAAACCCAAGCTTTGATCCTGGCTCCAACCAGAGAGTTAGCGGTGCAGATTCAGAAGGGTCTGCTCGCTCTGGGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077886.7 ENSMUST00000204530.2 |
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CDS CCA 90 bp | CTCATGAGGCAGTGTGGCACTGACGAGAACGACCTGTGTGGCTGGTaGCAAATACCTGTACACATCATAGATCTGCTCCTTGAAACCTCT | + |
Preference number: 5 (lower is better) Translates to: LMRQCGTDENDLCGW*QIPVHIIDLLLETS Trigger: AGAGGTTTCAAGGAGCAGATCTATGATGTGTACAGGTATTTGCCACCAGCCACACAGGTCGTTCTCGTCAGTGCCACACTGCCTCATGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000077886.7 ENSMUST00000204530.2 ENSMUST00000204966.2 |
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CDS CCA 90 bp | GATCTCATGAGGCAGTGTGGCACTGACGAGAACGACCTGTGTGGCTaGTGGCAAATACCTGTACACATCATAGATCTGCTCCTTGAAACC | + |
Preference number: 5 (lower is better) Translates to: DLMRQCGTDENDLCG*WQIPVHIIDLLLET Trigger: GGTTTCAAGGAGCAGATCTATGATGTGTACAGGTATTTGCCACCAGCCACACAGGTCGTTCTCGTCAGTGCCACACTGCCTCATGAGATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000077886.7 ENSMUST00000204530.2 ENSMUST00000204966.2 |
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CDS-3UTR CAA 90 bp | AGCATTGGGTCATTTACACGTGCATTAGAAAAGATGGCGGAGGCTGAGGGTCTTCCTTTCATTATCTGCTaGATAGCACGCTGCTGGATC | + |
Preference number: 5 (lower is better) Translates to: SIGSFTRALEKMAEAEGLPFIIC*IARCWI Trigger: GATCCAGCAGCGTGCTATCAAGCAGATAATGAAAGG...AAGACCCTCAGCCTCCGCCATCTTTTCTAATGCACGTGTAAATGACCCAATGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204530.2 |
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CDS CCA 72 bp | CGTAGATGCCGCGCAGCAGGTCCTCTCGCAGGCCCATaGTGTCGAACGTGGGGGTCGCGTCCACCTCCTCGC | + |
Preference number: 6 (lower is better) Translates to: RRCRAAGPLAGP*CRTWGSRPPPR Trigger: GCGAGGAGGTGGACGCGACCCCCACGTTCGACACCATGGGCCTGCGAGAGGACCTGCTGCGCGGCATCTACG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000077886.7 ENSMUST00000204530.2 ENSMUST00000204966.2 |
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CDS CCA 72 bp | GCAGCAGGTCCTCTCGCAGGCCCATGGTGTCGAACGTaGGGGTCGCGTCCACCTCCTCGCTGGTCTCGAACT | + |
Preference number: 6 (lower is better) Translates to: AAGPLAGPWCRT*GSRPPPRWSRT Trigger: AGTTCGAGACCAGCGAGGAGGTGGACGCGACCCCCACGTTCGACACCATGGGCCTGCGAGAGGACCTGCTGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000077886.7 ENSMUST00000204530.2 ENSMUST00000204966.2 |
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CDS CAA 90 bp | AACGTGGGGGTCGCGTCCACCTCCTCGCTGGTCTCGAACTCCACTTaGGTCATGCCGTCCTCTTTGAGCAGCCGCTTCCGCGCCGAGCCA | + |
Preference number: 6 (lower is better) Translates to: NVGVASTSSLVSNST*VMPSSLSSRFRAEP Trigger: TGGCTCGGCGCGGAAGCGGCTGCTCAAAGAGGACGGCATGACCAAAGTGGAGTTCGAGACCAGCGAGGAGGTGGACGCGACCCCCACGTT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000077886.7 ENSMUST00000204530.2 ENSMUST00000204966.2 |
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CDS CAA 72 bp | CTGGTCTCGAACTCCACTTTGGTCATGCCGTCCTCTTaGAGCAGCCGCTTCCGCGCCGAGCCAGACGTCGCC | + |
Preference number: 6 (lower is better) Translates to: LVSNSTLVMPSS*SSRFRAEPDVA Trigger: GGCGACGTCTGGCTCGGCGCGGAAGCGGCTGCTCAAAGAGGACGGCATGACCAAAGTGGAGTTCGAGACCAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000077886.7 ENSMUST00000204530.2 ENSMUST00000204966.2 |
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CDS TCA 72 bp | TGGTCTCGAACTCCACTTTGGTCATGCCGTCCTCTTTaGGCAGCCGCTTCCGCGCCGAGCCAGACGTCGCCA | + |
Preference number: 6 (lower is better) Translates to: WSRTPLWSCRPL*AAASAPSQTSP Trigger: TGGCGACGTCTGGCTCGGCGCGGAAGCGGCTGCTCAAAGAGGACGGCATGACCAAAGTGGAGTTCGAGACCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000077886.7 ENSMUST00000204530.2 ENSMUST00000204966.2 |
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CDS CAA 72 bp | GTCGCGTCCACCTCCTCGCTGGTCTCGAACTCCACTTaGGTCATGCCGTCCTCTTTGAGCAGCCGCTTCCGC | + |
Preference number: 6 (lower is better) Translates to: VASTSSLVSNST*VMPSSLSSRFR Trigger: GCGGAAGCGGCTGCTCAAAGAGGACGGCATGACCAAAGTGGAGTTCGAGACCAGCGAGGAGGTGGACGCGAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000077886.7 ENSMUST00000204530.2 ENSMUST00000204966.2 |
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CDS GCA 72 bp | CGTAGTCCAGCTTCCGGATGTCCTCCCCGACATTGGTaGCCCCAACGCAGGCATGGCACTGCACGTTCATGT | + |
Preference number: 6 (lower is better) Translates to: RSPASGCPPRHW*PQRRHGTARSC Trigger: ACATGAACGTGCAGTGCCATGCCTGCGTTGGGGGCACCAATGTCGGGGAGGACATCCGGAAGCTGGACTACG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000077886.7 ENSMUST00000204530.2 ENSMUST00000204966.2 |
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CDS CCA 72 bp | TGGTGTCGAACGTGGGGGTCGCGTCCACCTCCTCGCTaGTCTCGAACTCCACTTTGGTCATGCCGTCCTCTT | + |
Preference number: 6 (lower is better) Translates to: WCRTWGSRPPPR*SRTPLWSCRPL Trigger: AAGAGGACGGCATGACCAAAGTGGAGTTCGAGACCAGCGAGGAGGTGGACGCGACCCCCACGTTCGACACCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000077886.7 ENSMUST00000204530.2 ENSMUST00000204966.2 |
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CDS TCA 72 bp | AGCGAGCAGACCCTGGATATCCAAGCACTGGAGCACTaGGATACTGAAGGTGGCCGTCTTGCCTGTGCCAGA | + |
Preference number: 6 (lower is better) Translates to: SEQTLDIQALEH*DTEGGRLACAR Trigger: TCTGGCACAGGCAAGACGGCCACCTTCAGTATCTCAGTGCTCCAGTGCTTGGATATCCAGGGTCTGCTCGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204966.2 |
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CDS CCA 72 bp | TCTCCCAGAGCGAGCAGACCCTGGATATCCAAGCACTaGAGCACTGAGATACTGAAGGTGGCCGTCTTGCCT | + |
Preference number: 6 (lower is better) Translates to: SPRASRPWISKH*STEILKVAVLP Trigger: AGGCAAGACGGCCACCTTCAGTATCTCAGTGCTCCAGTGCTTGGATATCCAGGGTCTGCTCGCTCTGGGAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204966.2 |
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CDS TCA 72 bp | GACCCTGGATATCCAAGCACTGGAGCACTGAGATACTaGAGGTGGCCGTCTTGCCTGTGCCAGACTGAGACT | + |
Preference number: 6 (lower is better) Translates to: DPGYPSTGALRY*RWPSCLCQTET Trigger: AGTCTCAGTCTGGCACAGGCAAGACGGCCACCTTCAGTATCTCAGTGCTCCAGTGCTTGGATATCCAGGGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204966.2 |
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CDS TCA 72 bp | GAACCTGGATATCCAAGCACTGGAGCACTGAGATACTaGAGGTGGCCGTCTTGCCTGTGCCAGACTGAGACT | + |
Preference number: 6 (lower is better) Translates to: EPGYPSTGALRY*RWPSCLCQTET Trigger: AGTCTCAGTCTGGCACAGGCAAGACGGCCACCTTCAGTATCTCAGTGCTCCAGTGCTTGGATATCCAGGTTC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077886.7 ENSMUST00000204530.2 |
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CDS TCA 72 bp | GGTTTCTCGAACCTGGATATCCAAGCACTGGAGCACTaGGATACTGAAGGTGGCCGTCTTGCCTGTGCCAGA | + |
Preference number: 6 (lower is better) Translates to: GFSNLDIQALEH*DTEGGRLACAR Trigger: TCTGGCACAGGCAAGACGGCCACCTTCAGTATCTCAGTGCTCCAGTGCTTGGATATCCAGGTTCGAGAAACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077886.7 ENSMUST00000204530.2 |
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CDS CCA 72 bp | AGGCAGTGTGGCACTGACGAGAACGACCTGTGTGGCTaGTGGCAAATACCTGTACACATCATAGATCTGCTC | + |
Preference number: 6 (lower is better) Translates to: RQCGTDENDLCG*WQIPVHIIDLL Trigger: GAGCAGATCTATGATGTGTACAGGTATTTGCCACCAGCCACACAGGTCGTTCTCGTCAGTGCCACACTGCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000077886.7 ENSMUST00000204530.2 ENSMUST00000204966.2 |
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CDS CCA 72 bp | CAGTGTGGCACTGACGAGAACGACCTGTGTGGCTGGTaGCAAATACCTGTACACATCATAGATCTGCTCCTT | + |
Preference number: 6 (lower is better) Translates to: QCGTDENDLCGW*QIPVHIIDLLL Trigger: AAGGAGCAGATCTATGATGTGTACAGGTATTTGCCACCAGCCACACAGGTCGTTCTCGTCAGTGCCACACTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000077886.7 ENSMUST00000204530.2 ENSMUST00000204966.2 |
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CDS CAA 72 bp | GACTGTGCGATGACATCTCTCCCTTTCATTATCTGCTaGATAGCACGCTGCTGGATCGCTGAAGGTTTTTCA | + |
Preference number: 6 (lower is better) Translates to: DCAMTSLPFIIC*IARCWIAEGFS Trigger: TGAAAAACCTTCAGCGATCCAGCAGCGTGCTATCAAGCAGATAATGAAAGGGAGAGATGTCATCGCACAGTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000077886.7 ENSMUST00000204530.2 ENSMUST00000204966.2 |