Pregenerated sensors for EIF3M (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027170Ensembl transcript IDs: ENSMUST00000028592.12, ENSMUST00000111110.3
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TCTCACTTGATCCAGCTCCGTTGGGATGTACTGGATGGCCCCACATaGTGCCGCCACTTTGATGAGGCTGCAGTACACTGTGTACCTCAC | + |
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Preference number: 5 (lower is better) Translates to: SHLIQLRWDVLDGPT*CRHFDEAAVHCVPH Trigger: GTGAGGTACACAGTGTACTGCAGCCTCATCAAAGTGGCGGCATCATGTGGGGCCATCCAGTACATCCCAACGGAGCTGGATCAAGTGAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028592.12 |
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| CDS TCA 90 bp | AGCATTGTCCTCTGTGTAACTCCCGAGCAATTCCACCATGACCTTTaGTGCAGCATCACTTTTCTTACAATCCACGAGCGCCTCGTAGAG | + |
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Preference number: 5 (lower is better) Translates to: SIVLCVTPEQFHHDL*CSITFLTIHERLVE Trigger: CTCTACGAGGCGCTCGTGGATTGTAAGAAAAGTGATGCTGCATCAAAGGTCATGGTGGAATTGCTCGGGAGTTACACAGAGGACAATGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028592.12 ENSMUST00000111110.3 |
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| CDS GCA 90 bp | GCCTTCCCGAAACTTGACCAGCTTTTCACACAGACTTTCAATCAATaGTTCTTGCTTGTCTGGTTCCAGGATCAACAGGAGGGACACCAC | + |
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Preference number: 5 (lower is better) Translates to: AFPKLDQLFTQTFNQ*FLLVWFQDQQEGHH Trigger: GTGGTGTCCCTCCTGTTGATCCTGGAACCAGACAAGCAAGAAGCATTGATTGAAAGTCTGTGTGAAAAGCTGGTCAAGTTTCGGGAAGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028592.12 |
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| CDS GCA 90 bp | CGAAACTTGACCAGCTTTTCACACAGACTTTCAATCAATGCTTCTTaGTTGTCTGGTTCCAGGATCAACAGGAGGGACACCACACTGTTC | + |
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Preference number: 5 (lower is better) Translates to: RNLTSFSHRLSINAS*LSGSRINRRDTTLF Trigger: GAACAGTGTGGTGTCCCTCCTGTTGATCCTGGAACCAGACAAGCAAGAAGCATTGATTGAAAGTCTGTGTGAAAAGCTGGTCAAGTTTCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028592.12 |
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| CDS TCA 72 bp | ATCCAGCTCCGTTGGGATGTACTGGATGGCCCCACATaGTGCCGCCACTTTGATGAGGCTGCAGTACACTGT | + |
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Preference number: 6 (lower is better) Translates to: IQLRWDVLDGPT*CRHFDEAAVHC Trigger: ACAGTGTACTGCAGCCTCATCAAAGTGGCGGCATCATGTGGGGCCATCCAGTACATCCCAACGGAGCTGGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028592.12 |
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| CDS CAA 72 bp | GGGATGTACTGGATGGCCCCACATGATGCCGCCACTTaGATGAGGCTGCAGTACACTGTGTACCTCACAGGA | + |
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Preference number: 6 (lower is better) Translates to: GMYWMAPHDAAT*MRLQYTVYLTG Trigger: TCCTGTGAGGTACACAGTGTACTGCAGCCTCATCAAAGTGGCGGCATCATGTGGGGCCATCCAGTACATCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028592.12 |
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| CDS CAA 72 bp | AGTCAGAGATCCACTTTCTCACTTGATCCAGCTCCGTaGGGATGTACTGGATGGCCCCACATGATGCCGCCA | + |
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Preference number: 6 (lower is better) Translates to: SQRSTFSLDPAP*GCTGWPHMMPP Trigger: TGGCGGCATCATGTGGGGCCATCCAGTACATCCCAACGGAGCTGGATCAAGTGAGAAAGTGGATCTCTGACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028592.12 |
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| CDS CAA 90 bp | AGCTCCGTTGGGATGTACTGGATGGCCCCACATGATGCCGCCACTTaGATGAGGCTGCAGTACACTGTGTACCTCACAGGAGTATTCTTG | + |
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Preference number: 6 (lower is better) Translates to: SSVGMYWMAPHDAAT*MRLQYTVYLTGVFL Trigger: CAAGAATACTCCTGTGAGGTACACAGTGTACTGCAGCCTCATCAAAGTGGCGGCATCATGTGGGGCCATCCAGTACATCCCAACGGAGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028592.12 |
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| CDS CAA 72 bp | AGGCTGCAGTACACTGTGTACCTCACAGGAGTATTCTaGTCCATCCCATGGAAAAGGTTGCTGAGCAACTGT | + |
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Preference number: 6 (lower is better) Translates to: RLQYTVYLTGVF*SIPWKRLLSNC Trigger: ACAGTTGCTCAGCAACCTTTTCCATGGGATGGACAAGAATACTCCTGTGAGGTACACAGTGTACTGCAGCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028592.12 |
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| CDS CAA 90 bp | CTGAGCAACTGTAGTCTCAGAGATGGGCGTTCGCCTTCCCGAAACTaGACCAGCTTTTCACACAGACTTTCAATCAATGCTTCTTGCTTG | + |
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Preference number: 6 (lower is better) Translates to: LSNCSLRDGRSPSRN*TSFSHRLSINASCL Trigger: CAAGCAAGAAGCATTGATTGAAAGTCTGTGTGAAAAGCTGGTCAAGTTTCGGGAAGGCGAACGCCCATCTCTGAGACTACAGTTGCTCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028592.12 |
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| CDS CAA 90 bp | CCGAAACTTGACCAGCTTTTCACACAGACTTTCAATCAATGCTTCTaGCTTGTCTGGTTCCAGGATCAACAGGAGGGACACCACACTGTT | + |
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Preference number: 6 (lower is better) Translates to: PKLDQLFTQTFNQCF*LVWFQDQQEGHHTV Trigger: AACAGTGTGGTGTCCCTCCTGTTGATCCTGGAACCAGACAAGCAAGAAGCATTGATTGAAAGTCTGTGTGAAAAGCTGGTCAAGTTTCGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028592.12 |
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| CDS CAA 90 bp | ACTTTGATGAGGCTGCAGTACACTGTGTACCTCACAGGAGTATTCTaGTCCATCCCATGGAAAAGGTTGCTGAGCAACTGTAGTCTCAGA | + |
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Preference number: 6 (lower is better) Translates to: TLMRLQYTVYLTGVF*SIPWKRLLSNCSLR Trigger: TCTGAGACTACAGTTGCTCAGCAACCTTTTCCATGGGATGGACAAGAATACTCCTGTGAGGTACACAGTGTACTGCAGCCTCATCAAAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028592.12 |
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| CDS CAA 72 bp | CACCTTCCGAGTTTTCTTCTGAGAGCTCAGCTCCTTTaGATTTCAGATAAGCTCGAAGTTCAGCAGCCTGGT | + |
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Preference number: 6 (lower is better) Translates to: HLPSFLLRAQLL*ISDKLEVQQPG Trigger: ACCAGGCTGCTGAACTTCGAGCTTATCTGAAATCAAAAGGAGCTGAGCTCTCAGAAGAAAACTCGGAAGGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028592.12 |
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| CDS CAA 90 bp | AACTTGACCAGCTTTTCACACAGACTTTCAATCAATGCTTCTTGCTaGTCTGGTTCCAGGATCAACAGGAGGGACACCACACTGTTCATC | + |
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Preference number: 6 (lower is better) Translates to: NLTSFSHRLSINASC*SGSRINRRDTTLFI Trigger: GATGAACAGTGTGGTGTCCCTCCTGTTGATCCTGGAACCAGACAAGCAAGAAGCATTGATTGAAAGTCTGTGTGAAAAGCTGGTCAAGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028592.12 |
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| CDS CCA 72 bp | ACTGTGTACCTCACAGGAGTATTCTTGTCCATCCCATaGAAAAGGTTGCTGAGCAACTGTAGTCTCAGAGAT | + |
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Preference number: 6 (lower is better) Translates to: TVYLTGVFLSIP*KRLLSNCSLRD Trigger: ATCTCTGAGACTACAGTTGCTCAGCAACCTTTTCCATGGGATGGACAAGAATACTCCTGTGAGGTACACAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028592.12 |
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| CDS CAA 72 bp | AGCTTTTCACACAGACTTTCAATCAATGCTTCTTGCTaGTCTGGTTCCAGGATCAACAGGAGGGACACCACA | + |
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Preference number: 6 (lower is better) Translates to: SFSHRLSINASC*SGSRINRRDTT Trigger: TGTGGTGTCCCTCCTGTTGATCCTGGAACCAGACAAGCAAGAAGCATTGATTGAAAGTCTGTGTGAAAAGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028592.12 |
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| CDS TCA 72 bp | CATTGTCCTCTGTGTAACTCCCGAGCAATTCCACCATaGCCTTTGATGCAGCATCACTTTTCTTACAATCCA | + |
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Preference number: 6 (lower is better) Translates to: HCPLCNSRAIPP*PLMQHHFSYNP Trigger: TGGATTGTAAGAAAAGTGATGCTGCATCAAAGGTCATGGTGGAATTGCTCGGGAGTTACACAGAGGACAATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028592.12 ENSMUST00000111110.3 |
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