Pregenerated sensors for EIF3L (Mus musculus)
Ensembl gene IDs: ENSMUSG00000033047Ensembl transcript IDs: ENSMUST00000040518.6
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CAACAAAGACCCTTTACTGAGAGCGCCTTAAAACATCCAGTCCTTGATTTGAACGGTAAGGCTTCTTGGTaGCAAGAATGCTTCCCATCT | + |
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Preference number: 2 (lower is better) Translates to: QQRPFTESALKHPVLDLNGKASW*QECFPS Trigger: AGATGGGAAGCATTCTTGTCACCAAGAAGCCTTACC...GTTCAAATCAAGGACTGGATGTTTTAAGGCGCTCTCAGTAAAGGGTCTTTGTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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| 3UTR TCA 72 bp | ATTCAGCTGACGGCTGACTTAGGTAAGGCTTCTTGGTaGCAAGAATGCTTCCCATCTATAATATCAAAACAG | + |
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Preference number: 3 (lower is better) Translates to: IQLTADLGKASW*QECFPSIISKQ Trigger: CTGTTTTGATATTATAGATGGGAAGCATTCTTGTCACCAAGAAGCCTTACCTAAGTCAGCCGTCAGCTGAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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| CDS-3UTR CCA 90 bp | CAAAGACCCTTTACTGAGAGCGCCTTAAAACATCCAGTCCTTGATTTGAACAAGCCCAGAGCCACTGGTTaGGGAGTTCAAGGGGCGCAG | + |
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Preference number: 4 (lower is better) Translates to: QRPFTESALKHPVLDLNKPRATG*GVQGAQ Trigger: CTGCGCCCCTTGAACTCCCCAACCAGTGGCTCTGGG...CTTGTTCAAATCAAGGACTGGATGTTTTAAGGCGCTCTCAGTAAAGGGTCTTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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| CDS-3UTR GCA 90 bp | CAAAGACCCTTTACTGAGAGCGCCTTAAAACATCCAGTCCTTGATTTGAACAAGTCCCCCAGTAGAGAATaGAGGCGCAGAAGCCCCACC | + |
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Preference number: 4 (lower is better) Translates to: QRPFTESALKHPVLDLNKSPSRE*RRRSPT Trigger: GGTGGGGCTTCTGCGCCTGCATTCTCTACTGGGGGA...CTTGTTCAAATCAAGGACTGGATGTTTTAAGGCGCTCTCAGTAAAGGGTCTTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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| CDS-3UTR GCA 90 bp | CAAAGACCCTTTACTGAGAGCGCCTTAAAACATCCAGTCCTTGATTTGAACAAGTGGGGGTCCCCCTTCTaGATGCGCAGCATCTTGTCC | + |
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Preference number: 4 (lower is better) Translates to: QRPFTESALKHPVLDLNKWGSPF*MRSILS Trigger: GGACAAGATGCTGCGCATGCAGAAGGGGGACCCCCA...CTTGTTCAAATCAAGGACTGGATGTTTTAAGGCGCTCTCAGTAAAGGGTCTTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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| CDS-3UTR GCA 90 bp | CAACAAAGACCCTTTACTGAGAGCGCCTTAAAACATCCAGTCCTTGATTTGAACGTGGAGAGCTGGGCCTaGTGCTGCACCTCATCGGAA | + |
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Preference number: 4 (lower is better) Translates to: QQRPFTESALKHPVLDLNVESWA*CCTSSE Trigger: TTCCGATGAGGTGCAGCAGCAGGCCCAGCTCTCCAC...GTTCAAATCAAGGACTGGATGTTTTAAGGCGCTCTCAGTAAAGGGTCTTTGTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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| CDS-3UTR CCA 90 bp | GAATGCTTCCCATCTATAATATCAAAACAGGTTCTTGACTCGTGGATGAGTATCCCGGGTCACCTCCGCTaGTGTAGACCTCCAGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: ECFPSIISKQVLDSWMSIPGHLR*CRPPAA Trigger: GGCAGCTGGAGGTCTACACCAGCGGAGGTGACCCGG...GATACTCATCCACGAGTCAAGAACCTGTTTTGATATTATAGATGGGAAGCATTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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| CDS-3UTR CCA 90 bp | CAACAAAGACCCTTTACTGAGAGCGCCTTAAAACATCCAGTCCTTGATTTGAACATGTCCCAGAGCCACTaGTTGGGGAGTTCAAGGGGC | + |
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Preference number: 4 (lower is better) Translates to: QQRPFTESALKHPVLDLNMSQSH*LGSSRG Trigger: GCCCCTTGAACTCCCCAACCAGTGGCTCTGGGACAT...GTTCAAATCAAGGACTGGATGTTTTAAGGCGCTCTCAGTAAAGGGTCTTTGTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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| CDS-3UTR TCA 90 bp | CAACAAAGACCCTTTACTGAGAGCGCCTTAAAACATCCAGTCCTTGATTTGAACGTCCATCTCTCCCTCTaGCTTCTTGGCCGTCTTGCA | + |
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Preference number: 4 (lower is better) Translates to: QQRPFTESALKHPVLDLNVHLSL*LLGRLA Trigger: TGCAAGACGGCCAAGAAGTCAGAGGGAGAGATGGAC...GTTCAAATCAAGGACTGGATGTTTTAAGGCGCTCTCAGTAAAGGGTCTTTGTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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| CDS-3UTR CCA 90 bp | CAACAAAGACCCTTTACTGAGAGCGCCTTAAAACATCCAGTCCTTGATTTGAACTATTTCTCCCGCAGCTaGAGGTGTATGCTCTCGTCG | + |
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Preference number: 4 (lower is better) Translates to: QQRPFTESALKHPVLDLNYFSRS*RCMLSS Trigger: CGACGAGAGCATACACCTCCAGCTGCGGGAGAAATA...GTTCAAATCAAGGACTGGATGTTTTAAGGCGCTCTCAGTAAAGGGTCTTTGTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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| CDS-3UTR TCA 90 bp | CAAAGACCCTTTACTGAGAGCGCCTTAAAACATCCAGTCCTTGATTTGAACAAGTGCAGCGGTACTGACTaGATGACTGGAACTGGTAGA | + |
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Preference number: 4 (lower is better) Translates to: QRPFTESALKHPVLDLNKCSGTD*MTGTGR Trigger: TCTACCAGTTCCAGTCATTCAGTCAGTACCGCTGCA...CTTGTTCAAATCAAGGACTGGATGTTTTAAGGCGCTCTCAGTAAAGGGTCTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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| CDS-3UTR GCA 90 bp | CAACAAAGACCCTTTACTGAGAGCGCCTTAAAACATCCAGTCCTTGATTTGAACATTGCCAACTTGGGGTaGAATTGCTTCTGCCTCAGG | + |
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Preference number: 4 (lower is better) Translates to: QQRPFTESALKHPVLDLNIANLG*NCFCLR Trigger: CCTGAGGCAGAAGCAATTGCACCCCAAGTTGGCAAT...GTTCAAATCAAGGACTGGATGTTTTAAGGCGCTCTCAGTAAAGGGTCTTTGTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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| CDS-3UTR GCA 90 bp | CAAAGACCCTTTACTGAGAGCGCCTTAAAACATCCAGTCCTTGATTTGAACAAGCATCTAGGGCAGAAATaGCACTGGTCCACACCAGAT | + |
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Preference number: 4 (lower is better) Translates to: QRPFTESALKHPVLDLNKHLGQK*HWSTPD Trigger: ATCTGGTGTGGACCAGTGGCATTTCTGCCCTAGATG...CTTGTTCAAATCAAGGACTGGATGTTTTAAGGCGCTCTCAGTAAAGGGTCTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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| CDS-3UTR TCA 90 bp | CAAAGACCCTTTACTGAGAGCGCCTTAAAACATCCAGTCCTTGATTTGAACAAGGCGGTACTGACTGAATaGCTGGAACTGGTAGATGAA | + |
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Preference number: 4 (lower is better) Translates to: QRPFTESALKHPVLDLNKAVLTE*LELVDE Trigger: TTCATCTACCAGTTCCAGTCATTCAGTCAGTACCGC...CTTGTTCAAATCAAGGACTGGATGTTTTAAGGCGCTCTCAGTAAAGGGTCTTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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| CDS-3UTR TCA 90 bp | GAATGCTTCCCATCTATAATATCAAAACAGGTTCTTGACTCGTGGATGAGTATCTGGGGCAGGCATAGCTaGAAAGTTCCTCATAGACCT | + |
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Preference number: 4 (lower is better) Translates to: ECFPSIISKQVLDSWMSIWGRHS*KVPHRP Trigger: AGGTCTATGAGGAACTTTTCAGCTATGCCTGCCCCA...GATACTCATCCACGAGTCAAGAACCTGTTTTGATATTATAGATGGGAAGCATTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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| CDS-3UTR CCA 90 bp | CAAAGACCCTTTACTGAGAGCGCCTTAAAACATCCAGTCCTTGATTTGAACAAGAGCTCGTACACCTTCTaGTCAATCAAATCGGAGACA | + |
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Preference number: 4 (lower is better) Translates to: QRPFTESALKHPVLDLNKSSYTF*SIKSET Trigger: TGTCTCCGATTTGATTGACCAGAAGGTGTACGAGCT...CTTGTTCAAATCAAGGACTGGATGTTTTAAGGCGCTCTCAGTAAAGGGTCTTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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| CDS-3UTR TCA 90 bp | CAACAAAGACCCTTTACTGAGAGCGCCTTAAAACATCCAGTCCTTGATTTGAACACTCGGATAGCATCCTaGTATCGACGCATCATTAAA | + |
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Preference number: 4 (lower is better) Translates to: QQRPFTESALKHPVLDLNTRIAS*YRRIIK Trigger: TTTAATGATGCGTCGATATCAGGATGCTATCCGAGT...GTTCAAATCAAGGACTGGATGTTTTAAGGCGCTCTCAGTAAAGGGTCTTTGTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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| CDS-3UTR CCA 90 bp | GAATGCTTCCCATCTATAATATCAAAACAGGTTCTTGACTCGTGGATGAGTATCAATCCCCATAGCGTCTaGCAACTTTGGTGTCTGCAA | + |
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Preference number: 4 (lower is better) Translates to: ECFPSIISKQVLDSWMSINPHSV*QLWCLQ Trigger: TTGCAGACACCAAAGTTGCCAGACGCTATGGGGATT...GATACTCATCCACGAGTCAAGAACCTGTTTTGATATTATAGATGGGAAGCATTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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| CDS-3UTR TCA 90 bp | GAATGCTTCCCATCTATAATATCAAAACAGGTTCTTGACTCGTGGATGAGTATCGCCACGGTGTATTCTTaGAGAACCTTTCAGTTAGCT | + |
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Preference number: 4 (lower is better) Translates to: ECFPSIISKQVLDSWMSIATVYS*RTFQLA Trigger: AGCTAACTGAAAGGTTCTTCAAGAATACACCGTGGC...GATACTCATCCACGAGTCAAGAACCTGTTTTGATATTATAGATGGGAAGCATTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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| CDS-3UTR CCA 90 bp | GAATGCTTCCCATCTATAATATCAAAACAGGTTCTTGACTCGTGGATGAGTATCAGCGTCTGGCAACTTTaGTGTCTGCAATATGGATCA | + |
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Preference number: 4 (lower is better) Translates to: ECFPSIISKQVLDSWMSISVWQL*CLQYGS Trigger: TGATCCATATTGCAGACACCAAAGTTGCCAGACGCT...GATACTCATCCACGAGTCAAGAACCTGTTTTGATATTATAGATGGGAAGCATTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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| CDS-3UTR CCA 90 bp | GAATGCTTCCCATCTATAATATCAAAACAGGTTCTTGACTCGTGGATGAGTATCTCGGAGACAGTCTTGTaGAAGTACTGGATGAAGTTT | + |
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Preference number: 4 (lower is better) Translates to: ECFPSIISKQVLDSWMSISETVL*KYWMKF Trigger: AAACTTCATCCAGTACTTCCACAAGACTGTCTCCGA...GATACTCATCCACGAGTCAAGAACCTGTTTTGATATTATAGATGGGAAGCATTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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| CDS-3UTR CCA 90 bp | GAATGCTTCCCATCTATAATATCAAAACAGGTTCTTGACTCGTGGATGAGTATCACCTTTCAGTTAGCTTaGTCCAGCTGTTCTCGTAAA | + |
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Preference number: 4 (lower is better) Translates to: ECFPSIISKQVLDSWMSITFQLA*SSCSRK Trigger: TTTACGAGAACAGCTGGACCAAGCTAACTGAAAGGT...GATACTCATCCACGAGTCAAGAACCTGTTTTGATATTATAGATGGGAAGCATTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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| CDS-3UTR CAA 90 bp | CAAAGACCCTTTACTGAGAGCGCCTTAAAACATCCAGTCCTTGATTTGAACAAGTCCCAGAGCCACTGGTaGGGGAGTTCAAGGGGCGCA | + |
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Preference number: 5 (lower is better) Translates to: QRPFTESALKHPVLDLNKSQSHW*GSSRGA Trigger: TGCGCCCCTTGAACTCCCCAACCAGTGGCTCTGGGA...CTTGTTCAAATCAAGGACTGGATGTTTTAAGGCGCTCTCAGTAAAGGGTCTTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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| CDS-3UTR CAA 90 bp | CAACAAAGACCCTTTACTGAGAGCGCCTTAAAACATCCAGTCCTTGATTTGAACCAACTTGGGGTGCAATaGCTTCTGCCTCAGGCCACG | + |
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Preference number: 5 (lower is better) Translates to: QQRPFTESALKHPVLDLNQLGVQ*LLPQAT Trigger: CGTGGCCTGAGGCAGAAGCAATTGCACCCCAAGTTG...GTTCAAATCAAGGACTGGATGTTTTAAGGCGCTCTCAGTAAAGGGTCTTTGTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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| CDS-3UTR CAA 90 bp | GAATGCTTCCCATCTATAATATCAAAACAGGTTCTTGACTCGTGGATGAGTATCTCTCCCTCTGACTTCTaGGCCGTCTTGCAGCGGTAC | + |
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Preference number: 5 (lower is better) Translates to: ECFPSIISKQVLDSWMSISPSDF*AVLQRY Trigger: GTACCGCTGCAAGACGGCCAAGAAGTCAGAGGGAGA...GATACTCATCCACGAGTCAAGAACCTGTTTTGATATTATAGATGGGAAGCATTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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| CDS-3UTR CAA 90 bp | GAATGCTTCCCATCTATAATATCAAAACAGGTTCTTGACTCGTGGATGAGTATCCGGTTGATGTTGGACTaGTCCACCAGGGAGTGCAGC | + |
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Preference number: 5 (lower is better) Translates to: ECFPSIISKQVLDSWMSIRLMLD*STRECS Trigger: GCTGCACTCCCTGGTGGACAAGTCCAACATCAACCG...GATACTCATCCACGAGTCAAGAACCTGTTTTGATATTATAGATGGGAAGCATTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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| CDS GCA 90 bp | GCCTGTAGTACAATTCTTTGTACAAAATTAGGAATACGGCATCATTaGCAACTTGGGGTGCAATTGCTTCTGCCTCAGGCCACGGTGTAT | + |
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Preference number: 5 (lower is better) Translates to: ACSTILCTKLGIRHH*QLGVQLLLPQATVY Trigger: ATACACCGTGGCCTGAGGCAGAAGCAATTGCACCCCAAGTTGGCAATGATGCCGTATTCCTAATTTTGTACAAAGAATTGTACTACAGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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| CDS-3UTR CAA 90 bp | CAAAGACCCTTTACTGAGAGCGCCTTAAAACATCCAGTCCTTGATTTGAACAAGAAATCGGAGACAGTCTaGTGGAAGTACTGGATGAAG | + |
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Preference number: 5 (lower is better) Translates to: QRPFTESALKHPVLDLNKKSETV*WKYWMK Trigger: CTTCATCCAGTACTTCCACAAGACTGTCTCCGATTT...CTTGTTCAAATCAAGGACTGGATGTTTTAAGGCGCTCTCAGTAAAGGGTCTTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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| CDS-3UTR CAA 90 bp | GAATGCTTCCCATCTATAATATCAAAACAGGTTCTTGACTCGTGGATGAGTATCACCAGATTCTTCATCTaGTGCTTGAAGACGAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: ECFPSIISKQVLDSWMSITRFFI*CLKTSS Trigger: GCTGCTCGTCTTCAAGCACAAGATGAAGAATCTGGT...GATACTCATCCACGAGTCAAGAACCTGTTTTGATATTATAGATGGGAAGCATTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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| CDS-3UTR CAA 90 bp | CAACAAAGACCCTTTACTGAGAGCGCCTTAAAACATCCAGTCCTTGATTTGAACGAATACATGCTTTTCTaGTTCAGCTCGATATTCTCC | + |
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Preference number: 5 (lower is better) Translates to: QQRPFTESALKHPVLDLNEYMLF*FSSIFS Trigger: GGAGAATATCGAGCTGAACAAGAAAAGCATGTATTC...GTTCAAATCAAGGACTGGATGTTTTAAGGCGCTCTCAGTAAAGGGTCTTTGTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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| CDS-3UTR CAA 90 bp | GAATGCTTCCCATCTATAATATCAAAACAGGTTCTTGACTCGTGGATGAGTATCTACTGGATGAAGTTTTaGATCACTTCCGGTATCACC | + |
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Preference number: 5 (lower is better) Translates to: ECFPSIISKQVLDSWMSIYWMKF*ITSGIT Trigger: GGTGATACCGGAAGTGATCAAAAACTTCATCCAGTA...GATACTCATCCACGAGTCAAGAACCTGTTTTGATATTATAGATGGGAAGCATTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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| CDS TCA 72 bp | GGTCACCTCCGCTGGTGTAGACCTCCAGCTGCCGGTTaGTGTTGGACTTGTCCACCAGGGAGTGCAGCACGT | + |
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Preference number: 6 (lower is better) Translates to: GHLRWCRPPAAG*CWTCPPGSAAR Trigger: ACGTGCTGCACTCCCTGGTGGACAAGTCCAACATCAACCGGCAGCTGGAGGTCTACACCAGCGGAGGTGACC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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| CDS TCA 72 bp | CCAGTAGAGAATGCAGGCGCAGAAGCCCCACCAGGCTaGAGTAGCCGAGCATCTTGTAGAGGGAGTGTCGTC | + |
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Preference number: 6 (lower is better) Translates to: PVENAGAEAPPG*SSRASCRGSVV Trigger: GACGACACTCCCTCTACAAGATGCTCGGCTACTTCAGCCTGGTGGGGCTTCTGCGCCTGCATTCTCTACTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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| CDS CAA 72 bp | ACGTTGAGGACGCTGTGCACGTTCCAGACTTTAGGGTaGGACCTAAGGAAGTCCATCTCTCCCTCTGACTTC | + |
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Preference number: 6 (lower is better) Translates to: TLRTLCTFQTLG*DLRKSISPSDF Trigger: GAAGTCAGAGGGAGAGATGGACTTCCTTAGGTCCAACCCTAAAGTCTGGAACGTGCACAGCGTCCTCAACGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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| CDS GCA 72 bp | TACGGCATCATTGCCAACTTGGGGTGCAATTGCTTCTaGCTCAGGCCACGGTGTATTCTTGAAGAACCTTTC | + |
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Preference number: 6 (lower is better) Translates to: YGIIANLGCNCF*LRPRCILEEPF Trigger: GAAAGGTTCTTCAAGAATACACCGTGGCCTGAGGCAGAAGCAATTGCACCCCAAGTTGGCAATGATGCCGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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| CDS CCA 72 bp | TTGTACAAAATTAGGAATACGGCATCATTGCCAACTTaGGGTGCAATTGCTTCTGCCTCAGGCCACGGTGTA | + |
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Preference number: 6 (lower is better) Translates to: LYKIRNTASLPT*GAIASASGHGV Trigger: TACACCGTGGCCTGAGGCAGAAGCAATTGCACCCCAAGTTGGCAATGATGCCGTATTCCTAATTTTGTACAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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| CDS GCA 72 bp | ACAATTCTTTGTACAAAATTAGGAATACGGCATCATTaGCAACTTGGGGTGCAATTGCTTCTGCCTCAGGCC | + |
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Preference number: 6 (lower is better) Translates to: TILCTKLGIRHH*QLGVQLLLPQA Trigger: GGCCTGAGGCAGAAGCAATTGCACCCCAAGTTGGCAATGATGCCGTATTCCTAATTTTGTACAAAGAATTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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| CDS CAA 72 bp | TACAATTCTTTGTACAAAATTAGGAATACGGCATCATaGCCAACTTGGGGTGCAATTGCTTCTGCCTCAGGC | + |
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Preference number: 6 (lower is better) Translates to: YNSLYKIRNTAS*PTWGAIASASG Trigger: GCCTGAGGCAGAAGCAATTGCACCCCAAGTTGGCAATGATGCCGTATTCCTAATTTTGTACAAAGAATTGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040518.6 |
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