Pregenerated sensors for EIF3J2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000043424Ensembl transcript IDs: ENSMUST00000057110.11
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GCTGAGGAAATCTTAGCCCTTGTCTACCTTCAACAGTATTTACTGGAGTTATTGGTTCCCTCCCCCATATaGAGTCCTCCATCAATAGAA | + |
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Preference number: 2 (lower is better) Translates to: AEEILALVYLQQYLLELLVPSPI*SPPSIE Trigger: TTCTATTGATGGAGGACTTCATATGGGGGAGGGAAC...CAATAACTCCAGTAAATACTGTTGAAGGTAGACAAGGGCTAAGATTTCCTCAGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057110.11 |
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| 3UTR-3UTR TCA 90 bp | TCCTGTTCTCCACTTAGTAGTCTACAGAGCTTTGAGATTCCTATTGCCTATGGAGACTACATCAAGCATTaGTTAGCTTTAGTGAGTAGA | + |
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Preference number: 2 (lower is better) Translates to: SCSPLSSLQSFEIPIAYGDYIKH*LALVSR Trigger: TCTACTCACTAAAGCTAATCAATGCTTGATGTAGTC...TCCATAGGCAATAGGAATCTCAAAGCTCTGTAGACTACTAAGTGGAGAACAGGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057110.11 |
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| 3UTR-3UTR CAA 90 bp | TTAGATGGTCCTGTTCTCCACTTAGTAGTCTACAGAGCTTTGAGATTCCTATTGTACATGTTGAAGGGATaGTGGGCAAAGAAAGAAGAC | + |
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Preference number: 3 (lower is better) Translates to: LDGPVLHLVVYRALRFLLYMLKG*WAKKED Trigger: GTCTTCTTTCTTTGCCCACAATCCCTTCAACATGTA...CAATAGGAATCTCAAAGCTCTGTAGACTACTAAGTGGAGAACAGGACCATCTAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057110.11 |
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| 3UTR-3UTR CAA 90 bp | GCTGAGGAAATCTTAGCCCTTGTCTACCTTCAACAGTATTTACTGGAGTTATTGCCAAGTCGGAGGGTTTaGGTCATTAAAATCTTAAGT | + |
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Preference number: 3 (lower is better) Translates to: AEEILALVYLQQYLLELLPSRRV*VIKILS Trigger: ACTTAAGATTTTAATGACCAAAACCCTCCGACTTGG...CAATAACTCCAGTAAATACTGTTGAAGGTAGACAAGGGCTAAGATTTCCTCAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057110.11 |
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| 3UTR-3UTR CAA 90 bp | GCTGAGGAAATCTTAGCCCTTGTCTACCTTCAACAGTATTTACTGGAGTTATTGTGCAGCCTAGAACATTaGTTTCTCAGACACTTGAAT | + |
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Preference number: 3 (lower is better) Translates to: AEEILALVYLQQYLLELLCSLEH*FLRHLN Trigger: ATTCAAGTGTCTGAGAAACAAATGTTCTAGGCTGCA...CAATAACTCCAGTAAATACTGTTGAAGGTAGACAAGGGCTAAGATTTCCTCAGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057110.11 |
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| 3UTR-3UTR CAA 90 bp | ATTACTGCTGAGGAAATCTTAGCCCTTGTCTACCTTCAACAGTATTTACTGGAGGCTTTGAGATTCCTATaGCCTATGGAAGAGAAATCA | + |
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Preference number: 3 (lower is better) Translates to: ITAEEILALVYLQQYLLEALRFL*PMEEKS Trigger: TGATTTCTCTTCCATAGGCAATAGGAATCTCAAAGC...CTCCAGTAAATACTGTTGAAGGTAGACAAGGGCTAAGATTTCCTCAGCAGTAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057110.11 |
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| CDS-3UTR TCA 90 bp | GCTGAGGAAATCTTAGCCCTTGTCTACCTTCAACAGTATTTACTGGAGTTATTGCGCGTCCCAAGAGTCTaGGTCCCCCGCCGCCGCTGC | + |
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Preference number: 4 (lower is better) Translates to: AEEILALVYLQQYLLELLRVPRV*VPRRRC Trigger: GCAGCGGCGGCGGGGGACTCAGACTCTTGGGACGCG...CAATAACTCCAGTAAATACTGTTGAAGGTAGACAAGGGCTAAGATTTCCTCAGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057110.11 |
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| 3UTR CAA 72 bp | GATGGTCCTGTTCTCCACTTAGTAGTCTACAGAGCTTaGAGATTCCTATTGCCTATGGAAGAGAAATCAAAA | + |
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Preference number: 4 (lower is better) Translates to: DGPVLHLVVYRA*RFLLPMEEKSK Trigger: TTTTGATTTCTCTTCCATAGGCAATAGGAATCTCAAAGCTCTGTAGACTACTAAGTGGAGAACAGGACCATC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057110.11 |
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| CDS-3UTR GCA 90 bp | AACAGTATTTACTGGAGTTATTGCTGTGTAGTCACACCTCCTACTAATTCATGTTTCTGGTTTGACTTCTaGTTCCTCTTTATTTTCATC | + |
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Preference number: 4 (lower is better) Translates to: NSIYWSYCCVVTPPTNSCFWFDF*FLFIFI Trigger: GATGAAAATAAAGAGGAAGCAGAAGTCAAACCAGAA...ACATGAATTAGTAGGAGGTGTGACTACACAGCAATAACTCCAGTAAATACTGTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057110.11 |
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| CDS TCA 90 bp | CCGCACCGGGTCCTCCATAGAGAACGTGTCCGCGTCCCAAGAGTCTaGGTCCCCCGCCGCCGCTGCCGCCGCCGCCGCCGCCGCCGCCGC | + |
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Preference number: 5 (lower is better) Translates to: PHRVLHRERVRVPRV*VPRRRCRRRRRRRR Trigger: GCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGGGGGACTCAGACTCTTGGGACGCGGACACGTTCTCTATGGAGGACCCGGTGCGG 78% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057110.11 |
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| CDS TCA 72 bp | GTCCTCCATAGAGAACGTGTCCGCGTCCCAAGAGTCTaGGTCCCCCGCCGCCGCTGCCGCCGCCGCCGCCGC | + |
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Preference number: 6 (lower is better) Translates to: VLHRERVRVPRV*VPRRRCRRRRR Trigger: GCGGCGGCGGCGGCGGCAGCGGCGGCGGGGGACTCAGACTCTTGGGACGCGGACACGTTCTCTATGGAGGAC 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057110.11 |
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