Pregenerated sensors for EIF3J1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027236Ensembl transcript IDs: ENSMUST00000028668.8
Found 74 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCCTGCATCCAACTGAAGCTGATTGAGTCTCAGCCCTGGGGTAAGTaGAGTCTTAGGAGTCTTAGGAGCTCTGGGGAGCAGTCCAGGTGG | + |
|
Preference number: 1 (lower is better) Translates to: ACIQLKLIESQPWGK*SLRSLRSSGEQSRW Trigger: CCACCTGGACTGCTCCCCAGAGCTCCTAAGACTCCTAAGACTGCACTTACCCCAGGGCTGAGACTCAATCAGCTTCAGTTGGATGCAGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR CCA 90 bp | GAGGCAGCAGCCTGCATCCAACTGAAGCTGATTGAGTCTCAGCCCTaGGGTAAGTGCAGTCTTAGGAGTCTTAGGAGCTCTGGGGAGCAG | + |
|
Preference number: 1 (lower is better) Translates to: EAAACIQLKLIESQP*GKCSLRSLRSSGEQ Trigger: CTGCTCCCCAGAGCTCCTAAGACTCCTAAGACTGCACTTACCCCAGGGCTGAGACTCAATCAGCTTCAGTTGGATGCAGGCTGCTGCCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR GCA 90 bp | TTCAGTATGTGCCGGGAGATAGGAGAGAATCACGAGGCAGCAGCCTaGATCCAACTGAAGCTGATTGAGTCTCAGCCCTGGGGTAAGTGC | + |
|
Preference number: 1 (lower is better) Translates to: FSMCREIGENHEAAA*IQLKLIESQPWGKC Trigger: GCACTTACCCCAGGGCTGAGACTCAATCAGCTTCAGTTGGATGCAGGCTGCTGCCTCGTGATTCTCTCCTATCTCCCGGCACATACTGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR GCA 90 bp | CGTTGCCGCCCTGGAGACAGCGAAAAGCACAATATGATTGCCCTGTaGTTCAGTATGTGCCGGGAGATAGGAGAGAATCACGAGGCAGCA | + |
|
Preference number: 1 (lower is better) Translates to: RCRPGDSEKHNMIAL*FSMCREIGENHEAA Trigger: TGCTGCCTCGTGATTCTCTCCTATCTCCCGGCACATACTGAAGCACAGGGCAATCATATTGTGCTTTTCGCTGTCTCCAGGGCGGCAACG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR GCA 90 bp | GGAGACAGCGAAAAGCACAATATGATTGCCCTGTGCTTCAGTATGTaGCGGGAGATAGGAGAGAATCACGAGGCAGCAGCCTGCATCCAA | + |
|
Preference number: 1 (lower is better) Translates to: GDSEKHNMIALCFSM*REIGENHEAAACIQ Trigger: TTGGATGCAGGCTGCTGCCTCGTGATTCTCTCCTATCTCCCGGCACATACTGAAGCACAGGGCAATCATATTGTGCTTTTCGCTGTCTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR GCA 90 bp | CATCAAACGTTGCCGCCCTGGAGACAGCGAAAAGCACAATATGATTaGCCTGTGCTTCAGTATGTGCCGGGAGATAGGAGAGAATCACGA | + |
|
Preference number: 1 (lower is better) Translates to: HQTLPPWRQRKAQYD*PVLQYVPGDRRESR Trigger: TCGTGATTCTCTCCTATCTCCCGGCACATACTGAAGCACAGGGCAATCATATTGTGCTTTTCGCTGTCTCCAGGGCGGCAACGTTTGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR CCA 90 bp | AGTGGCACACTTCTTCAGTTCCCAGTACTAAGGAGGCAGAAGCAGTaGCAGACAGAGCTCTCTGAGTTTAAAGCCAGCCTGGTCCACAAT | + |
|
Preference number: 1 (lower is better) Translates to: SGTLLQFPVLRRQKQ*QTELSEFKASLVHN Trigger: ATTGTGGACCAGGCTGGCTTTAAACTCAGAGAGCTCTGTCTGCCACTGCTTCTGCCTCCTTAGTACTGGGAACTGAAGAAGTGTGCCACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR CCA 90 bp | GATGCAGCAGAGAGTTACGCCAAGGTAACCAGTGTTATTCTAACCTaGCCTCCAGCCTTGGCAGTACTAGGAATTACTTTGGCTTGGGCT | + |
|
Preference number: 1 (lower is better) Translates to: DAAESYAKVTSVILT*PPALAVLGITLAWA Trigger: AGCCCAAGCCAAAGTAATTCCTAGTACTGCCAAGGCTGGAGGCCAGGTTAGAATAACACTGGTTACCTTGGCGTAACTCTCTGCTGCATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR CCA 90 bp | CACCCTGAAGACAGCCCTACTAGACTACATCAAACGTTGCCGCCCTaGAGACAGCGAAAAGCACAATATGATTGCCCTGTGCTTCAGTAT | + |
|
Preference number: 1 (lower is better) Translates to: HPEDSPTRLHQTLPP*RQRKAQYDCPVLQY Trigger: ATACTGAAGCACAGGGCAATCATATTGTGCTTTTCGCTGTCTCCAGGGCGGCAACGTTTGATGTAGTCTAGTAGGGCTGTCTTCAGGGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR TCA 90 bp | GGGGAGCAGTCCAGGTGGCAGAAGATGACAGTTCACAGAAACATTTaGACCTTAGGACTGAACATGCTAAGGTGTCATCCACCAAACCTA | + |
|
Preference number: 1 (lower is better) Translates to: GEQSRWQKMTVHRNI*TLGLNMLRCHPPNL Trigger: TAGGTTTGGTGGATGACACCTTAGCATGTTCAGTCCTAAGGTTCAAATGTTTCTGTGAACTGTCATCTTCTGCCACCTGGACTGCTCCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR CCA 90 bp | TTGCAGGCTTCTATTGTAGCTGAGGCCTATGACTTTGTTCCTGACTaGGCTGAAGTACTCTACCAACAAGTGATTCTTAAAGGAGACTTT | + |
|
Preference number: 1 (lower is better) Translates to: LQASIVAEAYDFVPD*AEVLYQQVILKGDF Trigger: AAAGTCTCCTTTAAGAATCACTTGTTGGTAGAGTACTTCAGCCCAGTCAGGAACAAAGTCATAGGCCTCAGCTACAATAGAAGCCTGCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR CCA 90 bp | CCGGCTCACCAAGTTGATAACACTACAGATTCACTTTCTCAACAGTaGCCAGAATACAATGCTTATCAACTTGGGCCATCAGAAGCTAAT | + |
|
Preference number: 1 (lower is better) Translates to: PAHQVDNTTDSLSQQ*PEYNAYQLGPSEAN Trigger: ATTAGCTTCTGATGGCCCAAGTTGATAAGCATTGTATTCTGGCCACTGTTGAGAAAGTGAATCTGTAGTGTTATCAACTTGGTGAGCCGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR CCA 90 bp | TCCTTTGCCTATCCTCTTAAGTCTTTCCAGATTGTGTTCTTGGAATaGTCTTCCCAGAGATCAGTTCTAGCCTTTAAAATAAAAGGGACT | + |
|
Preference number: 1 (lower is better) Translates to: SFAYPLKSFQIVFLE*SSQRSVLAFKIKGT Trigger: AGTCCCTTTTATTTTAAAGGCTAGAACTGATCTCTGGGAAGACCATTCCAAGAACACAATCTGGAAAGACTTAAGAGGATAGGCAAAGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR TCA 90 bp | GTAGATATAAACAACACCAGCCTACCGACAGGGTCACAGAAAACCTaGAGAAGTTACTTTCATATTGTGAAGATATCTACCTGTATTACA | + |
|
Preference number: 1 (lower is better) Translates to: VDINNTSLPTGSQKT*RSYFHIVKISTCIT Trigger: TGTAATACAGGTAGATATCTTCACAATATGAAAGTAACTTCTTCAGGTTTTCTGTGACCCTGTCGGTAGGCTGGTGTTGTTTATATCTAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR CCA 90 bp | ACTACTGATTGTTATACATCTCTAACACATGATTTGGGCAAAGGATaGAGAATTTTGATGTTTGTCAGTTATGGGTCAGGTATCCTTTGC | + |
|
Preference number: 1 (lower is better) Translates to: TTDCYTSLTHDLGKG*RILMFVSYGSGILC Trigger: GCAAAGGATACCTGACCCATAACTGACAAACATCAAAATTCTCCATCCTTTGCCCAAATCATGTGTTAGAGATGTATAACAATCAGTAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR CAA 90 bp | GGCAAGTACTGCCAGCATGCCTGCTCATCCTGTGGTGTTTCACTCTaGGCCCCAGGGGCTGAGTCTGACCTTTCAGGGCTAGTTCTCCCA | + |
|
Preference number: 2 (lower is better) Translates to: GKYCQHACSSCGVSL*APGAESDLSGLVLP Trigger: TGGGAGAACTAGCCCTGAAAGGTCAGACTCAGCCCCTGGGGCCAAGAGTGAAACACCACAGGATGAGCAGGCATGCTGGCAGTACTTGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR CAA 90 bp | CACCACAGCCCAGGCTCTAACGGCCCCTCCCACCATGCCCATCCTTaGCAGGCTTCTATTGTAGCTGAGGCCTATGACTTTGTTCCTGAC | + |
|
Preference number: 2 (lower is better) Translates to: HHSPGSNGPSHHAHP*QASIVAEAYDFVPD Trigger: GTCAGGAACAAAGTCATAGGCCTCAGCTACAATAGAAGCCTGCAAAGGATGGGCATGGTGGGAGGGGCCGTTAGAGCCTGGGCTGTGGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR CAA 90 bp | GGGACGGTCACAATAAAGTTCTCCCTTCCTGTGTCTCCTCCACCCTaGTCCCTCAGGACTCCTGTGTTCGACAGGCCCTGCACTGTAACC | + |
|
Preference number: 2 (lower is better) Translates to: GTVTIKFSLPVSPPP*SLRTPVFDRPCTVT Trigger: GGTTACAGTGCAGGGCCTGTCGAACACAGGAGTCCTGAGGGACAAGGGTGGAGGAGACACAGGAAGGGAGAACTTTATTGTGACCGTCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR-3UTR CCA 90 bp | AGTACCATGCGGAGGCAATGTGAGATGGATGTGTGTGCTTTTAGTGATTCAGGCAGGAGGCAGAAGCAGTaGCAGACAGAGCTCTCTGAG | + |
|
Preference number: 2 (lower is better) Translates to: STMRRQCEMDVCAFSDSGRRQKQ*QTELSE Trigger: CTCAGAGAGCTCTGTCTGCCACTGCTTCTGCCTCCT...GCCTGAATCACTAAAAGCACACACATCCATCTCACATTGCCTCCGCATGGTACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR CAA 90 bp | AGTTACGCCAAGGTAACCAGTGTTATTCTAACCTGGCCTCCAGCCTaGGCAGTACTAGGAATTACTTTGGCTTGGGCTCTTCCAGCGAAG | + |
|
Preference number: 2 (lower is better) Translates to: SYAKVTSVILTWPPA*AVLGITLAWALPAK Trigger: CTTCGCTGGAAGAGCCCAAGCCAAAGTAATTCCTAGTACTGCCAAGGCTGGAGGCCAGGTTAGAATAACACTGGTTACCTTGGCGTAACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR CAA 90 bp | GACTCCTGTGTTCGACAGGCCCTGCACTGTAACCGGCTCACCAAGTaGATAACACTACAGATTCACTTTCTCAACAGTGGCCAGAATACA | + |
|
Preference number: 2 (lower is better) Translates to: DSCVRQALHCNRLTK*ITLQIHFLNSGQNT Trigger: TGTATTCTGGCCACTGTTGAGAAAGTGAATCTGTAGTGTTATCAACTTGGTGAGCCGGTTACAGTGCAGGGCCTGTCGAACACAGGAGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR CAA 90 bp | TGGGGAGCAGTCCAGGTGGCAGAAGATGACAGTTCACAGAAACATTaGAACCTTAGGACTGAACATGCTAAGGTGTCATCCACCAAACCT | + |
|
Preference number: 2 (lower is better) Translates to: WGAVQVAEDDSSQKH*NLRTEHAKVSSTKP Trigger: AGGTTTGGTGGATGACACCTTAGCATGTTCAGTCCTAAGGTTCAAATGTTTCTGTGAACTGTCATCTTCTGCCACCTGGACTGCTCCCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR-3UTR TCA 90 bp | CATTTGAACCTTAGGACTGAACATGCTAAGGTGTCATCCACCAAACCTAGGAGTCAGCCTTCACCCGAGTaGACACACCTGCTTGTGAAT | + |
|
Preference number: 2 (lower is better) Translates to: HLNLRTEHAKVSSTKPRSQPSPE*THLLVN Trigger: ATTCACAAGCAGGTGTGTTCACTCGGGTGAAGGCTG...ACTCCTAGGTTTGGTGGATGACACCTTAGCATGTTCAGTCCTAAGGTTCAAATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR CAA 90 bp | CAGATTCACTTTCTCAACAGTGGCCAGAATACAATGCTTATCAACTaGGGCCATCAGAAGCTAATGGACTGTATCATGACCCTACCTCGG | + |
|
Preference number: 2 (lower is better) Translates to: QIHFLNSGQNTMLIN*GHQKLMDCIMTLPR Trigger: CCGAGGTAGGGTCATGATACAGTCCATTAGCTTCTGATGGCCCAAGTTGATAAGCATTGTATTCTGGCCACTGTTGAGAAAGTGAATCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR-3UTR GCA 90 bp | TGTAACCGGCTCACCAAGTTGATAACACTACAGATTCACTTTCTCAACAGTGGCAAGAACGCCTGTACCTaGAGGTTCCAGTTTCAAAGC | + |
|
Preference number: 2 (lower is better) Translates to: CNRLTKLITLQIHFLNSGKNACT*RFQFQS Trigger: GCTTTGAAACTGGAACCTGCAGGTACAGGCGTTCTT...GCCACTGTTGAGAAAGTGAATCTGTAGTGTTATCAACTTGGTGAGCCGGTTACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR CAA 90 bp | GTACTAATGTCCCAGCACCAGCTTTTCTCCCTGCTCCTCACACAGTaGAGTTATGGAAATAATTCACATCTCAGCAGTTTTGCTGTCCAT | + |
|
Preference number: 2 (lower is better) Translates to: VLMSQHQLFSLLLTQ*SYGNNSHLSSFAVH Trigger: ATGGACAGCAAAACTGCTGAGATGTGAATTATTTCCATAACTCAACTGTGTGAGGAGCAGGGAGAAAAGCTGGTGCTGGGACATTAGTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR-3UTR GCA 90 bp | AAAGCCAGCCTGGTCCACAATGTAAGTTCCAAAGAAGCAAGGCTCTTACACAGAAAGGAAAGGAGGTTGTaGTACATGTTGAAGGGATTG | + |
|
Preference number: 2 (lower is better) Translates to: KASLVHNVSSKEARLLHRKERRL*YMLKGL Trigger: CAATCCCTTCAACATGTAGCACAACCTCCTTTCCTT...TCTGTGTAAGAGCCTTGCTTCTTTGGAACTTACATTGTGGACCAGGCTGGCTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR-3UTR TCA 90 bp | TGCGGAGGCAATGTGAGATGGATGTGTGTGCTTTTAGTGATTCAGGCCAAACTGAAGGATGGAGAATTTTaGTGTTTGTCAGTTATGGGT | + |
|
Preference number: 2 (lower is better) Translates to: CGGNVRWMCVLLVIQAKLKDGEF*CLSVMG Trigger: ACCCATAACTGACAAACATCAAAATTCTCCATCCTT...CAGTTTGGCCTGAATCACTAAAAGCACACACATCCATCTCACATTGCCTCCGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR-3UTR CCA 90 bp | AAGAACGCCTGTACCTGCAGGTTCCAGTTTCAAAGCAATTTAATCTTATTTACAAGACAGGCAATGCACTaGAGAGTCCACCACTTGCAC | + |
|
Preference number: 2 (lower is better) Translates to: KNACTCRFQFQSNLILFTRQAMH*RVHHLH Trigger: GTGCAAGTGGTGGACTCTCCAGTGCATTGCCTGTCT...TGTAAATAAGATTAAATTGCTTTGAAACTGGAACCTGCAGGTACAGGCGTTCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR-3UTR CCA 90 bp | CATCCTTTGCAGGCTTCTATTGTAGCTGAGGCCTATGACTTTGTTCCTGACTGGAGTGTTTTGTTAGAGTaGCTTCTACATCAGAGAAAC | + |
|
Preference number: 2 (lower is better) Translates to: HPLQASIVAEAYDFVPDWSVLLE*LLHQRN Trigger: GTTTCTCTGATGTAGAAGCCACTCTAACAAAACACT...CCAGTCAGGAACAAAGTCATAGGCCTCAGCTACAATAGAAGCCTGCAAAGGATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR-3UTR TCA 90 bp | CATTTGAACCTTAGGACTGAACATGCTAAGGTGTCATCCACCAAACCTAGGAGTATCTTTACCCCCATTTaGGTTGAAAAGCCCAGAAAT | + |
|
Preference number: 2 (lower is better) Translates to: HLNLRTEHAKVSSTKPRSIFTPI*VEKPRN Trigger: ATTTCTGGGCTTTTCAACTCAAATGGGGGTAAAGAT...ACTCCTAGGTTTGGTGGATGACACCTTAGCATGTTCAGTCCTAAGGTTCAAATG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR-3UTR CCA 90 bp | GTGTATAATGAATTAAGCAAAGGTCAGAGAACAGAAGGGACGGTCACAATAAAGGGAGGCAATGTGAGATaGATGTGTGTGCTTTTAGTG | + |
|
Preference number: 2 (lower is better) Translates to: VYNELSKGQRTEGTVTIKGGNVR*MCVLLV Trigger: CACTAAAAGCACACACATCCATCTCACATTGCCTCC...CTTTATTGTGACCGTCCCTTCTGTTCTCTGACCTTTGCTTAATTCATTATACAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR CAA 90 bp | ACACTCCCAGCCACTACTGATTGTTATACATCTCTAACACATGATTaGGGCAAAGGATGGAGAATTTTGATGTTTGTCAGTTATGGGTCA | + |
|
Preference number: 2 (lower is better) Translates to: TLPATTDCYTSLTHD*GKGWRILMFVSYGS Trigger: TGACCCATAACTGACAAACATCAAAATTCTCCATCCTTTGCCCAAATCATGTGTTAGAGATGTATAACAATCAGTAGTGGCTGGGAGTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR-3UTR GCA 90 bp | CCTCTTAAGTCTTTCCAGATTGTGTTCTTGGAATGGTCTTCCCAGAGATCAGTTTCAAAGTTTTCCCACTaGAGCCTAGAACATTTGTTT | + |
|
Preference number: 2 (lower is better) Translates to: PLKSFQIVFLEWSSQRSVSKFSH*SLEHLF Trigger: AAACAAATGTTCTAGGCTGCAGTGGGAAAACTTTGA...AACTGATCTCTGGGAAGACCATTCCAAGAACACAATCTGGAAAGACTTAAGAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR-3UTR TCA 90 bp | GTGTATAATGAATTAAGCAAAGGTCAGAGAACAGAAGGGACGGTCACAATAAAGTGCTCCTCACACAGTTaGGTTATGGAAATAATTCAC | + |
|
Preference number: 2 (lower is better) Translates to: VYNELSKGQRTEGTVTIKCSSHS*VMEIIH Trigger: GTGAATTATTTCCATAACTCAACTGTGTGAGGAGCA...CTTTATTGTGACCGTCCCTTCTGTTCTCTGACCTTTGCTTAATTCATTATACAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR-3UTR CCA 90 bp | AAAAACAAGTTACTGCATGAGTTTTATGGGAGGGAAATGCCAATCAATAAGACTATGTTGAAGGGATTGTaGGCAAAGAAAGAAGACAGC | + |
|
Preference number: 2 (lower is better) Translates to: KNKLLHEFYGREMPINKTMLKGL*AKKEDS Trigger: GCTGTCTTCTTTCTTTGCCCACAATCCCTTCAACAT...AGTCTTATTGATTGGCATTTCCCTCCCATAAAACTCATGCAGTAACTTGTTTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR-3UTR TCA 90 bp | GTTATGGAAATAATTCACATCTCAGCAGTTTTGCTGTCCATTGTAAGGAAGACTGACCCAATACTAGTTTaGCAATTTCCTAAGCTACAA | + |
|
Preference number: 2 (lower is better) Translates to: VMEIIHISAVLLSIVRKTDPILV*QFPKLQ Trigger: TTGTAGCTTAGGAAATTGTCAAACTAGTATTGGGTC...AGTCTTCCTTACAATGGACAGCAAAACTGCTGAGATGTGAATTATTTCCATAAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR-3UTR CCA 90 bp | AGTTATGGAAATAATTCACATCTCAGCAGTTTTGCTGTCCATTGTAAGGAAGACTTCAACAGTATTTACTaGAGTTATTGCTGTGTAGTC | + |
|
Preference number: 2 (lower is better) Translates to: SYGNNSHLSSFAVHCKEDFNSIY*SYCCVV Trigger: GACTACACAGCAATAACTCCAGTAAATACTGTTGAA...GTCTTCCTTACAATGGACAGCAAAACTGCTGAGATGTGAATTATTTCCATAACT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR GCA 72 bp | TGCCGGGAGATAGGAGAGAATCACGAGGCAGCAGCCTaGATCCAACTGAAGCTGATTGAGTCTCAGCCCTGG | + |
|
Preference number: 3 (lower is better) Translates to: CREIGENHEAAA*IQLKLIESQPW Trigger: CCAGGGCTGAGACTCAATCAGCTTCAGTTGGATGCAGGCTGCTGCCTCGTGATTCTCTCCTATCTCCCGGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR GCA 72 bp | CAACTGAAGCTGATTGAGTCTCAGCCCTGGGGTAAGTaGAGTCTTAGGAGTCTTAGGAGCTCTGGGGAGCAG | + |
|
Preference number: 3 (lower is better) Translates to: QLKLIESQPWGK*SLRSLRSSGEQ Trigger: CTGCTCCCCAGAGCTCCTAAGACTCCTAAGACTGCACTTACCCCAGGGCTGAGACTCAATCAGCTTCAGTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR-3UTR CAA 90 bp | AGTTACGCCAAGGTAACCAGTGTTATTCTAACCTGGCCTCCAGCCTTGGCAGTACGGCAATCCCAGCAGTaGCCTCAGTCAGTGCTAGTG | + |
|
Preference number: 3 (lower is better) Translates to: SYAKVTSVILTWPPALAVRQSQQ*PQSVLV Trigger: CACTAGCACTGACTGAGGCAACTGCTGGGATTGCCG...TACTGCCAAGGCTGGAGGCCAGGTTAGAATAACACTGGTTACCTTGGCGTAACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR GCA 72 bp | TTGCCGCCCTGGAGACAGCGAAAAGCACAATATGATTaGCCTGTGCTTCAGTATGTGCCGGGAGATAGGAGA | + |
|
Preference number: 3 (lower is better) Translates to: LPPWRQRKAQYD*PVLQYVPGDRR Trigger: TCTCCTATCTCCCGGCACATACTGAAGCACAGGGCAATCATATTGTGCTTTTCGCTGTCTCCAGGGCGGCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR GCA 72 bp | GAAAAGCACAATATGATTGCCCTGTGCTTCAGTATGTaGCGGGAGATAGGAGAGAATCACGAGGCAGCAGCC | + |
|
Preference number: 3 (lower is better) Translates to: EKHNMIALCFSM*REIGENHEAAA Trigger: GGCTGCTGCCTCGTGATTCTCTCCTATCTCCCGGCACATACTGAAGCACAGGGCAATCATATTGTGCTTTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR CCA 72 bp | CTTCTTCAGTTCCCAGTACTAAGGAGGCAGAAGCAGTaGCAGACAGAGCTCTCTGAGTTTAAAGCCAGCCTG | + |
|
Preference number: 3 (lower is better) Translates to: LLQFPVLRRQKQ*QTELSEFKASL Trigger: CAGGCTGGCTTTAAACTCAGAGAGCTCTGTCTGCCACTGCTTCTGCCTCCTTAGTACTGGGAACTGAAGAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR CCA 72 bp | GACAGCCCTACTAGACTACATCAAACGTTGCCGCCCTaGAGACAGCGAAAAGCACAATATGATTGCCCTGTG | + |
|
Preference number: 3 (lower is better) Translates to: DSPTRLHQTLPP*RQRKAQYDCPV Trigger: CACAGGGCAATCATATTGTGCTTTTCGCTGTCTCCAGGGCGGCAACGTTTGATGTAGTCTAGTAGGGCTGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR TCA 72 bp | CTCACCAGCCTTCACCCGAGTGAACACACCTGCTTGTaGATATACCTAGGATGTTTTTCCCATCTAGCCTGC | + |
|
Preference number: 3 (lower is better) Translates to: LTSLHPSEHTCL*IYLGCFSHLAC Trigger: GCAGGCTAGATGGGAAAAACATCCTAGGTATATTCACAAGCAGGTGTGTTCACTCGGGTGAAGGCTGGTGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR GCA 72 bp | CCTGGAGACAGCGAAAAGCACAATATGATTGCCCTGTaGTTCAGTATGTGCCGGGAGATAGGAGAGAATCAC | + |
|
Preference number: 3 (lower is better) Translates to: PGDSEKHNMIAL*FSMCREIGENH Trigger: GTGATTCTCTCCTATCTCCCGGCACATACTGAAGCACAGGGCAATCATATTGTGCTTTTCGCTGTCTCCAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR GCA 72 bp | ACCCTGAAGACAGCCCTACTAGACTACATCAAACGTTaGCGCCCTGGAGACAGCGAAAAGCACAATATGATT | + |
|
Preference number: 3 (lower is better) Translates to: TLKTALLDYIKR*RPGDSEKHNMI Trigger: AATCATATTGTGCTTTTCGCTGTCTCCAGGGCGGCAACGTTTGATGTAGTCTAGTAGGGCTGTCTTCAGGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR CCA 72 bp | CCTCCAGCCTTGGCAGTACTAGGAATTACTTTGGCTTaGGCTCTTCCAGCGAAGAGGGAGTGTATAATGAAT | + |
|
Preference number: 3 (lower is better) Translates to: PPALAVLGITLA*ALPAKRECIMN Trigger: ATTCATTATACACTCCCTCTTCGCTGGAAGAGCCCAAGCCAAAGTAATTCCTAGTACTGCCAAGGCTGGAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR TCA 72 bp | TTTCTTGGTCAGGTGACTGTGTATGCTCCCCAACAATaGGGACACGCCTGTTTCCTTGTTTTCAAGACAGCT | + |
|
Preference number: 3 (lower is better) Translates to: FLGQVTVYAPQQ*GHACFLVFKTA Trigger: AGCTGTCTTGAAAACAAGGAAACAGGCGTGTCCTCATTGTTGGGGAGCATACACAGTCACCTGACCAAGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR CCA 72 bp | GAGAGTTACGCCAAGGTAACCAGTGTTATTCTAACCTaGCCTCCAGCCTTGGCAGTACTAGGAATTACTTTG | + |
|
Preference number: 3 (lower is better) Translates to: ESYAKVTSVILT*PPALAVLGITL Trigger: CAAAGTAATTCCTAGTACTGCCAAGGCTGGAGGCCAGGTTAGAATAACACTGGTTACCTTGGCGTAACTCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR-3UTR CAA 90 bp | GTGTATAATGAATTAAGCAAAGGTCAGAGAACAGAAGGGACGGTCACAATAAAGCACCATGCCCATCCTTaGCAGGCTTCTATTGTAGCT | + |
|
Preference number: 3 (lower is better) Translates to: VYNELSKGQRTEGTVTIKHHAHP*QASIVA Trigger: AGCTACAATAGAAGCCTGCAAAGGATGGGCATGGTG...CTTTATTGTGACCGTCCCTTCTGTTCTCTGACCTTTGCTTAATTCATTATACAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR-3UTR CAA 90 bp | TGCGGAGGCAATGTGAGATGGATGTGTGTGCTTTTAGTGATTCAGGCCAAACTGTTAAGTCTTTCCAGATaGTGTTCTTGGAATGGTCTT | + |
|
Preference number: 3 (lower is better) Translates to: CGGNVRWMCVLLVIQAKLLSLSR*CSWNGL Trigger: AAGACCATTCCAAGAACACAATCTGGAAAGACTTAA...CAGTTTGGCCTGAATCACTAAAAGCACACACATCCATCTCACATTGCCTCCGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR-3UTR CAA 90 bp | CATTTGAACCTTAGGACTGAACATGCTAAGGTGTCATCCACCAAACCTAGGAGTCTGCTCCTCACACAGTaGAGTTATGGAAATAATTCA | + |
|
Preference number: 3 (lower is better) Translates to: HLNLRTEHAKVSSTKPRSLLLTQ*SYGNNS Trigger: TGAATTATTTCCATAACTCAACTGTGTGAGGAGCAG...ACTCCTAGGTTTGGTGGATGACACCTTAGCATGTTCAGTCCTAAGGTTCAAATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR CCA 72 bp | GGGCAAAGGATGGAGAATTTTGATGTTTGTCAGTTATaGGTCAGGTATCCTTTGCCTATCCTCTTAAGTCTT | + |
|
Preference number: 3 (lower is better) Translates to: GQRMENFDVCQL*VRYPLPILLSL Trigger: AAGACTTAAGAGGATAGGCAAAGGATACCTGACCCATAACTGACAAACATCAAAATTCTCCATCCTTTGCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR-3UTR CAA 90 bp | GTGTATAATGAATTAAGCAAAGGTCAGAGAACAGAAGGGACGGTCACAATAAAGTTCCAGATTGTGTTCTaGGAATGGTCTTCCCAGAGA | + |
|
Preference number: 3 (lower is better) Translates to: VYNELSKGQRTEGTVTIKFQIVF*EWSSQR Trigger: TCTCTGGGAAGACCATTCCAAGAACACAATCTGGAA...CTTTATTGTGACCGTCCCTTCTGTTCTCTGACCTTTGCTTAATTCATTATACAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR-3UTR CAA 90 bp | GTTATGGAAATAATTCACATCTCAGCAGTTTTGCTGTCCATTGTAAGGAAGACTCGCCTGATTGCTTGTTaGTACCTATACAGCTCTAAG | + |
|
Preference number: 3 (lower is better) Translates to: VMEIIHISAVLLSIVRKTRLIAC*YLYSSK Trigger: CTTAGAGCTGTATAGGTACAAACAAGCAATCAGGCG...AGTCTTCCTTACAATGGACAGCAAAACTGCTGAGATGTGAATTATTTCCATAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR CCA 72 bp | CAAGTTGATAACACTACAGATTCACTTTCTCAACAGTaGCCAGAATACAATGCTTATCAACTTGGGCCATCA | + |
|
Preference number: 3 (lower is better) Translates to: QVDNTTDSLSQQ*PEYNAYQLGPS Trigger: TGATGGCCCAAGTTGATAAGCATTGTATTCTGGCCACTGTTGAGAAAGTGAATCTGTAGTGTTATCAACTTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR TCA 72 bp | TTGTTCCTGACTGGGCTGAAGTACTCTACCAACAAGTaGTTCTTAAAGGAGACTTTAGTTATTTGGAAGAAT | + |
|
Preference number: 3 (lower is better) Translates to: LFLTGLKYSTNK*FLKETLVIWKN Trigger: ATTCTTCCAAATAACTAAAGTCTCCTTTAAGAATCACTTGTTGGTAGAGTACTTCAGCCCAGTCAGGAACAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR TCA 72 bp | ATCCTAATAAAGTATTTGGAGATCTTTACCCCCATTTaGGTTGAAAAGCCCAGAAATATACCATACTGCACT | + |
|
Preference number: 3 (lower is better) Translates to: ILIKYLEIFTPI*VEKPRNIPYCT Trigger: AGTGCAGTATGGTATATTTCTGGGCTTTTCAACTCAAATGGGGGTAAAGATCTCCAAATACTTTATTAGGAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR CAA 72 bp | TGCCAGCATGCCTGCTCATCCTGTGGTGTTTCACTCTaGGCCCCAGGGGCTGAGTCTGACCTTTCAGGGCTA | + |
|
Preference number: 4 (lower is better) Translates to: CQHACSSCGVSL*APGAESDLSGL Trigger: TAGCCCTGAAAGGTCAGACTCAGCCCCTGGGGCCAAGAGTGAAACACCACAGGATGAGCAGGCATGCTGGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR CAA 72 bp | CCAGGCTCTAACGGCCCCTCCCACCATGCCCATCCTTaGCAGGCTTCTATTGTAGCTGAGGCCTATGACTTT | + |
|
Preference number: 4 (lower is better) Translates to: PGSNGPSHHAHP*QASIVAEAYDF Trigger: AAAGTCATAGGCCTCAGCTACAATAGAAGCCTGCAAAGGATGGGCATGGTGGGAGGGGCCGTTAGAGCCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR CAA 72 bp | GTTCGACAGGCCCTGCACTGTAACCGGCTCACCAAGTaGATAACACTACAGATTCACTTTCTCAACAGTGGC | + |
|
Preference number: 4 (lower is better) Translates to: VRQALHCNRLTK*ITLQIHFLNSG Trigger: GCCACTGTTGAGAAAGTGAATCTGTAGTGTTATCAACTTGGTGAGCCGGTTACAGTGCAGGGCCTGTCGAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR CAA 72 bp | GCCTCCAGCCTTGGCAGTACTAGGAATTACTTTGGCTaGGGCTCTTCCAGCGAAGAGGGAGTGTATAATGAA | + |
|
Preference number: 4 (lower is better) Translates to: ASSLGSTRNYFG*GSSSEEGVYNE Trigger: TTCATTATACACTCCCTCTTCGCTGGAAGAGCCCAAGCCAAAGTAATTCCTAGTACTGCCAAGGCTGGAGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR CAA 72 bp | CACCCTGAAGACAGCCCTACTAGACTACATCAAACGTaGCCGCCCTGGAGACAGCGAAAAGCACAATATGAT | + |
|
Preference number: 4 (lower is better) Translates to: HPEDSPTRLHQT*PPWRQRKAQYD Trigger: ATCATATTGTGCTTTTCGCTGTCTCCAGGGCGGCAACGTTTGATGTAGTCTAGTAGGGCTGTCTTCAGGGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR CAA 72 bp | AAGGTAACCAGTGTTATTCTAACCTGGCCTCCAGCCTaGGCAGTACTAGGAATTACTTTGGCTTGGGCTCTT | + |
|
Preference number: 4 (lower is better) Translates to: KVTSVILTWPPA*AVLGITLAWAL Trigger: AAGAGCCCAAGCCAAAGTAATTCCTAGTACTGCCAAGGCTGGAGGCCAGGTTAGAATAACACTGGTTACCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| CDS-3UTR CCA 90 bp | TCATTTAGATGGTCCTGTTCTCCACTTAGTAGTCTACAGAGCTTTGAGATTCCTCCAGGTCGTCTTTCATaGTGGCCTTTAATCCCCCTC | + |
|
Preference number: 4 (lower is better) Translates to: SFRWSCSPLSSLQSFEIPPGRLS*WPLIPL Trigger: GAGGGGGATTAAAGGCCACCATGAAAGACGACCTGG...AGGAATCTCAAAGCTCTGTAGACTACTAAGTGGAGAACAGGACCATCTAAATGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR CAA 72 bp | TCCCAGCACCAGCTTTTCTCCCTGCTCCTCACACAGTaGAGTTATGGAAATAATTCACATCTCAGCAGTTTT | + |
|
Preference number: 4 (lower is better) Translates to: SQHQLFSLLLTQ*SYGNNSHLSSF Trigger: AAAACTGCTGAGATGTGAATTATTTCCATAACTCAACTGTGTGAGGAGCAGGGAGAAAAGCTGGTGCTGGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR CAA 72 bp | CAGGTTAGAAGATTGGAAAGGCGCCTGATTGCTTGTTaGTACCTATACAGCTCTAAGGGATGTTCAATCCTA | + |
|
Preference number: 4 (lower is better) Translates to: QVRRLERRLIAC*YLYSSKGCSIL Trigger: TAGGATTGAACATCCCTTAGAGCTGTATAGGTACAAACAAGCAATCAGGCGCCTTTCCAATCTTCTAACCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR CAA 72 bp | ACAAAATCCCAACCTCTGCAGATAGTGGTGGTGGAGTaGATCCCTCTCATTGACAATACAGTATTTAACCTG | + |
|
Preference number: 4 (lower is better) Translates to: TKSQPLQIVVVE*IPLIDNTVFNL Trigger: CAGGTTAAATACTGTATTGTCAATGAGAGGGATCAACTCCACCACCACTATCTGCAGAGGTTGGGATTTTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR CAA 72 bp | TTTCTCAACAGTGGCCAGAATACAATGCTTATCAACTaGGGCCATCAGAAGCTAATGGACTGTATCATGACC | + |
|
Preference number: 4 (lower is better) Translates to: FLNSGQNTMLIN*GHQKLMDCIMT Trigger: GGTCATGATACAGTCCATTAGCTTCTGATGGCCCAAGTTGATAAGCATTGTATTCTGGCCACTGTTGAGAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR CAA 72 bp | TTTGCCTATCCTCTTAAGTCTTTCCAGATTGTGTTCTaGGAATGGTCTTCCCAGAGATCAGTTCTAGCCTTT | + |
|
Preference number: 4 (lower is better) Translates to: FAYPLKSFQIVF*EWSSQRSVLAF Trigger: AAAGGCTAGAACTGATCTCTGGGAAGACCATTCCAAGAACACAATCTGGAAAGACTTAAGAGGATAGGCAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR CAA 72 bp | AATTTTGATGTTTGTCAGTTATGGGTCAGGTATCCTTaGCCTATCCTCTTAAGTCTTTCCAGATTGTGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: NFDVCQLWVRYP*PILLSLSRLCS Trigger: AGAACACAATCTGGAAAGACTTAAGAGGATAGGCAAAGGATACCTGACCCATAACTGACAAACATCAAAATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||
| 3UTR CAA 72 bp | AACGGAGGAAAAATTAGTATTGAGATCAGAAGTGTTTaGTTAGAGTGGCTTCTACATCAGAGAAACAATAGT | + |
|
Preference number: 4 (lower is better) Translates to: NGGKISIEIRSV*LEWLLHQRNNS Trigger: ACTATTGTTTCTCTGATGTAGAAGCCACTCTAACAAAACACTTCTGATCTCAATACTAATTTTTCCTCCGTT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028668.8 |
||