Pregenerated sensors for EIF3F (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031029Ensembl transcript IDs: ENSMUST00000033342.7
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGCTGGGTGACACTACCGCAGCCTAGGCTGTGGGAGCAGCCACTGTaGGTGAGTCATGCCAACATAACCAGCTTCTCCCCACAGTGCCCA | + |
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Preference number: 1 (lower is better) Translates to: GWVTLPQPRLWEQPL*VSHANITSFSPQCP Trigger: TGGGCACTGTGGGGAGAAGCTGGTTATGTTGGCATGACTCACCCACAGTGGCTGCTCCCACAGCCTAGGCTGCGGTAGTGTCACCCAGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR CCA 90 bp | AGCTGCTTGGTGTGGGGCTGGGTGACACTACCGCAGCCTAGGCTGTaGGAGCAGCCACTGTGGGTGAGTCATGCCAACATAACCAGCTTC | + |
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Preference number: 1 (lower is better) Translates to: SCLVWGWVTLPQPRL*EQPLWVSHANITSF Trigger: GAAGCTGGTTATGTTGGCATGACTCACCCACAGTGGCTGCTCCCACAGCCTAGGCTGCGGTAGTGTCACCCAGCCCCACACCAAGCAGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR GCA 90 bp | CCACTGTGGGTGAGTCATGCCAACATAACCAGCTTCTCCCCACAGTaGCCACTCCCTGGCTTCCGTGCGAGTTCAGGAACATGCTTCTTT | + |
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Preference number: 1 (lower is better) Translates to: PLWVSHANITSFSPQ*PLPGFRASSGTCFF Trigger: AAAGAAGCATGTTCCTGAACTCGCACGGAAGCCAGGGAGTGGGCACTGTGGGGAGAAGCTGGTTATGTTGGCATGACTCACCCACAGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR TCA 90 bp | CACCATGAAGGTTTTCTGCTCCTGTGGATCCATGGGTCCCAGGACTaGGGTGTGTGCCCATCCTCTATCCTGTTGCAGCTCACTAGCACA | + |
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Preference number: 1 (lower is better) Translates to: HHEGFLLLWIHGSQD*GVCPSSILLQLTST Trigger: TGTGCTAGTGAGCTGCAACAGGATAGAGGATGGGCACACACCTCAGTCCTGGGACCCATGGATCCACAGGAGCAGAAAACCTTCATGGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR GCA 90 bp | CTGAACAGTCTGGTGAAGCAGCTATTCCTCACCATGAAGGTTTTCTaGTCCTGTGGATCCATGGGTCCCAGGACTGAGGTGTGTGCCCAT | + |
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Preference number: 1 (lower is better) Translates to: LNSLVKQLFLTMKVF*SCGSMGPRTEVCAH Trigger: ATGGGCACACACCTCAGTCCTGGGACCCATGGATCCACAGGAGCAGAAAACCTTCATGGTGAGGAATAGCTGCTTCACCAGACTGTTCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR GCA 90 bp | TCCCCACAGTGCCCACTCCCTGGCTTCCGTGCGAGTTCAGGAACATaGTTCTTTCTCCTGGCCGACAATAAACTCGCATCAGATAAAGTT | + |
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Preference number: 1 (lower is better) Translates to: SPQCPLPGFRASSGT*FFLLADNKLASDKV Trigger: AACTTTATCTGATGCGAGTTTATTGTCGGCCAGGAGAAAGAAGCATGTTCCTGAACTCGCACGGAAGCCAGGGAGTGGGCACTGTGGGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR CCA 90 bp | AGGATTAGCTTCAATTCCCGATTCTCTGGCTCCCTTCTTCCCTGTTaGGATTACAGGTGTGCTATCACACCCTATTTTCTGGGGTGCTGG | + |
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Preference number: 1 (lower is better) Translates to: RISFNSRFSGSLLPC*DYRCAITPYFLGCW Trigger: CCAGCACCCCAGAAAATAGGGTGTGATAGCACACCTGTAATCCCAACAGGGAAGAAGGGAGCCAGAGAATCGGGAATTGAAGCTAATCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR CCA 90 bp | CACTCCCTGGCTTCCGTGCGAGTTCAGGAACATGCTTCTTTCTCCTaGCCGACAATAAACTCGCATCAGATAAAGTTCATTTACAAAAGG | + |
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Preference number: 1 (lower is better) Translates to: HSLASVRVQEHASFS*PTINSHQIKFIYKR Trigger: CCTTTTGTAAATGAACTTTATCTGATGCGAGTTTATTGTCGGCCAGGAGAAAGAAGCATGTTCCTGAACTCGCACGGAAGCCAGGGAGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR CCA 90 bp | GACCAGCCACTAACTGTGATTTCAGTGTTTAAGTTTACCATCCTTTaGCGTTTTGGTTTGTGTAGGCACATGCATATCTTACACGTGTCT | + |
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Preference number: 1 (lower is better) Translates to: DQPLTVISVFKFTIL*RFGLCRHMHILHVS Trigger: AGACACGTGTAAGATATGCATGTGCCTACACAAACCAAAACGCCAAAGGATGGTAAACTTAAACACTGAAATCACAGTTAGTGGCTGGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR-3UTR TCA 90 bp | TCCCCACAGTGCCCACTCCCTGGCTTCCGTGCGAGTTCAGGAACATGCTTCTTTGTCTCAGCCCTGTGGTaGAAACCTCGACCAGCACAA | + |
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Preference number: 2 (lower is better) Translates to: SPQCPLPGFRASSGTCFFVSALW*KPRPAQ Trigger: TTGTGCTGGTCGAGGTTTTCACCACAGGGCTGAGAC...AAAGAAGCATGTTCCTGAACTCGCACGGAAGCCAGGGAGTGGGCACTGTGGGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR-3UTR TCA 90 bp | CCTAGGCTGTGGGAGCAGCCACTGTGGGTGAGTCATGCCAACATAACCAGCTTCTCACAAGCAGCTGACTaGGTCACCGTGACTCAAGAC | + |
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Preference number: 2 (lower is better) Translates to: PRLWEQPLWVSHANITSFSQAAD*VTVTQD Trigger: GTCTTGAGTCACGGTGACTCAGTCAGCTGCTTGTGA...GAAGCTGGTTATGTTGGCATGACTCACCCACAGTGGCTGCTCCCACAGCCTAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR-3UTR CCA 90 bp | CCTAGGCTGTGGGAGCAGCCACTGTGGGTGAGTCATGCCAACATAACCAGCTTCCATGCTTCTTTCTCCTaGCCGACAATAAACTCGCAT | + |
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Preference number: 2 (lower is better) Translates to: PRLWEQPLWVSHANITSFHASFS*PTINSH Trigger: ATGCGAGTTTATTGTCGGCCAGGAGAAAGAAGCATG...GAAGCTGGTTATGTTGGCATGACTCACCCACAGTGGCTGCTCCCACAGCCTAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR-3UTR GCA 90 bp | CAGCCACTAACTGTGATTTCAGTGTTTAAGTTTACCATCCTTTGGCGTTTTGGTGCGAGTTCAGGAACATaGTTCTTTCTCCTGGCCGAC | + |
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Preference number: 2 (lower is better) Translates to: QPLTVISVFKFTILWRFGASSGT*FFLLAD Trigger: GTCGGCCAGGAGAAAGAAGCATGTTCCTGAACTCGC...ACCAAAACGCCAAAGGATGGTAAACTTAAACACTGAAATCACAGTTAGTGGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR-3UTR CCA 90 bp | CAGCCACTAACTGTGATTTCAGTGTTTAAGTTTACCATCCTTTGGCGTTTTGGTTGGGAGCAGCCACTGTaGGTGAGTCATGCCAACATA | + |
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Preference number: 2 (lower is better) Translates to: QPLTVISVFKFTILWRFGWEQPL*VSHANI Trigger: TATGTTGGCATGACTCACCCACAGTGGCTGCTCCCA...ACCAAAACGCCAAAGGATGGTAAACTTAAACACTGAAATCACAGTTAGTGGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR-3UTR GCA 90 bp | CTCTTATCTGGGAATATGCTCTTTAGGAATTGCTGCCGGTGTTTCTCATTAGCAGGACTGAGCTCCATATaGCCTAGGCATTCTACAGTT | + |
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Preference number: 2 (lower is better) Translates to: LLSGNMLFRNCCRCFSLAGLSSI*PRHSTV Trigger: AACTGTAGAATGCCTAGGGCATATGGAGCTCAGTCC...TGCTAATGAGAAACACCGGCAGCAATTCCTAAAGAGCATATTCCCAGATAAGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR-3UTR CCA 90 bp | CTCTTATCTGGGAATATGCTCTTTAGGAATTGCTGCCGGTGTTTCTCATTAGCAATTGTTTCTACTTGCTaGCCTCCCTGTGCCTCTAAG | + |
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Preference number: 2 (lower is better) Translates to: LLSGNMLFRNCCRCFSLAIVSTC*PPCASK Trigger: CTTAGAGGCACAGGGAGGCCAGCAAGTAGAAACAAT...TGCTAATGAGAAACACCGGCAGCAATTCCTAAAGAGCATATTCCCAGATAAGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR-3UTR GCA 90 bp | CTCTTATCTGGGAATATGCTCTTTAGGAATTGCTGCCGGTGTTTCTCATTAGCACACTGTAAACCACTGTaGCAAGAAAAAGCTGCTTGG | + |
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Preference number: 2 (lower is better) Translates to: LLSGNMLFRNCCRCFSLAHCKPL*QEKAAW Trigger: CCAAGCAGCTTTTTCTTGGCACAGTGGTTTACAGTG...TGCTAATGAGAAACACCGGCAGCAATTCCTAAAGAGCATATTCCCAGATAAGAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR-3UTR GCA 90 bp | CAGCCACTAACTGTGATTTCAGTGTTTAAGTTTACCATCCTTTGGCGTTTTGGTACCATGAAGGTTTTCTaGTCCTGTGGATCCATGGGT | + |
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Preference number: 2 (lower is better) Translates to: QPLTVISVFKFTILWRFGTMKVF*SCGSMG Trigger: ACCCATGGATCCACAGGAGCAGAAAACCTTCATGGT...ACCAAAACGCCAAAGGATGGTAAACTTAAACACTGAAATCACAGTTAGTGGCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR TCA 72 bp | CTGTGCCAAGAAAAAGCTGCTTGGTGTGGGGCTGGGTaGCACTACCGCAGCCTAGGCTGTGGGAGCAGCCAC | + |
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Preference number: 3 (lower is better) Translates to: LCQEKAAWCGAG*HYRSLGCGSSH Trigger: GTGGCTGCTCCCACAGCCTAGGCTGCGGTAGTGTCACCCAGCCCCACACCAAGCAGCTTTTTCTTGGCACAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR CCA 72 bp | GTGTGGGGCTGGGTGACACTACCGCAGCCTAGGCTGTaGGAGCAGCCACTGTGGGTGAGTCATGCCAACATA | + |
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Preference number: 3 (lower is better) Translates to: VWGWVTLPQPRL*EQPLWVSHANI Trigger: TATGTTGGCATGACTCACCCACAGTGGCTGCTCCCACAGCCTAGGCTGCGGTAGTGTCACCCAGCCCCACAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR CCA 72 bp | ACCACTGTGCCAAGAAAAAGCTGCTTGGTGTGGGGCTaGGTGACACTACCGCAGCCTAGGCTGTGGGAGCAG | + |
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Preference number: 3 (lower is better) Translates to: TTVPRKSCLVWG*VTLPQPRLWEQ Trigger: CTGCTCCCACAGCCTAGGCTGCGGTAGTGTCACCCAGCCCCACACCAAGCAGCTTTTTCTTGGCACAGTGGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR CCA 72 bp | ACACTACCGCAGCCTAGGCTGTGGGAGCAGCCACTGTaGGTGAGTCATGCCAACATAACCAGCTTCTCCCCA | + |
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Preference number: 3 (lower is better) Translates to: TLPQPRLWEQPL*VSHANITSFSP Trigger: TGGGGAGAAGCTGGTTATGTTGGCATGACTCACCCACAGTGGCTGCTCCCACAGCCTAGGCTGCGGTAGTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR-3UTR CAA 90 bp | TCTCCCCACAGTGCCCACTCCCTGGCTTCCGTGCGAGTTCAGGAACATGCTTCTCCACAAAGAAACCCTTaGCCTCCACTTCGGTCTCAG | + |
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Preference number: 3 (lower is better) Translates to: SPHSAHSLASVRVQEHASPQRNP*PPLRSQ Trigger: CTGAGACCGAAGTGGAGGCAAAGGGTTTCTTTGTGG...AGAAGCATGTTCCTGAACTCGCACGGAAGCCAGGGAGTGGGCACTGTGGGGAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR TCA 72 bp | AAACCCTTTGCCTCCACTTCGGTCTCAGCCCTGTGGTaGAAACCTCGACCAGCACAAGTGCCTCTTGGGGCT | + |
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Preference number: 3 (lower is better) Translates to: KPFASTSVSALW*KPRPAQVPLGA Trigger: AGCCCCAAGAGGCACTTGTGCTGGTCGAGGTTTTCACCACAGGGCTGAGACCGAAGTGGAGGCAAAGGGTTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR TCA 72 bp | GGTTTTCTGCTCCTGTGGATCCATGGGTCCCAGGACTaGGGTGTGTGCCCATCCTCTATCCTGTTGCAGCTC | + |
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Preference number: 3 (lower is better) Translates to: GFLLLWIHGSQD*GVCPSSILLQL Trigger: GAGCTGCAACAGGATAGAGGATGGGCACACACCTCAGTCCTGGGACCCATGGATCCACAGGAGCAGAAAACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR GCA 72 bp | GCACTAGTCCAGTCACTCACCTGCATTGTTTCTACTTaGTGGCCTCCCTGTGCCTCTAAGGCGACCAGCCAC | + |
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Preference number: 3 (lower is better) Translates to: ALVQSLTCIVST*WPPCASKATSH Trigger: GTGGCTGGTCGCCTTAGAGGCACAGGGAGGCCAGCAAGTAGAAACAATGCAGGTGAGTGACTGGACTAGTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR-3UTR CAA 90 bp | ACCATGAAGGTTTTCTGCTCCTGTGGATCCATGGGTCCCAGGACTGAGGTGTGTCCAAGAAAAAGCTGCTaGGTGTGGGGCTGGGTGACA | + |
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Preference number: 3 (lower is better) Translates to: TMKVFCSCGSMGPRTEVCPRKSC*VWGWVT Trigger: TGTCACCCAGCCCCACACCAAGCAGCTTTTTCTTGG...ACACACCTCAGTCCTGGGACCCATGGATCCACAGGAGCAGAAAACCTTCATGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR CCA 72 bp | CAACATAACCAGCTTCTCCCCACAGTGCCCACTCCCTaGCTTCCGTGCGAGTTCAGGAACATGCTTCTTTCT | + |
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Preference number: 3 (lower is better) Translates to: QHNQLLPTVPTP*LPCEFRNMLLS Trigger: AGAAAGAAGCATGTTCCTGAACTCGCACGGAAGCCAGGGAGTGGGCACTGTGGGGAGAAGCTGGTTATGTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR CCA 72 bp | TACAGGTGTGCTATCACACCCTATTTTCTGGGGTGCTaGGGACTGAGCTCCATATGCCCTAGGCATTCTACA | + |
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Preference number: 3 (lower is better) Translates to: YRCAITPYFLGC*GLSSICPRHST Trigger: TGTAGAATGCCTAGGGCATATGGAGCTCAGTCCCCAGCACCCCAGAAAATAGGGTGTGATAGCACACCTGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR TCA 72 bp | GATGCTGCTCAGGCAAGTGTCTCGCTTATACACAGATaGGGATTAGCTTCAATTCCCGATTCTCTGGCTCCC | + |
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Preference number: 3 (lower is better) Translates to: DAAQASVSLIHR*GLASIPDSLAP Trigger: GGGAGCCAGAGAATCGGGAATTGAAGCTAATCCTCATCTGTGTATAAGCGAGACACTTGCCTGAGCAGCATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR-3UTR CAA 90 bp | CTCTTATCTGGGAATATGCTCTTTAGGAATTGCTGCCGGTGTTTCTCATTAGCACTCCCTTCTTCCCTGTaGGGATTACAGGTGTGCTAT | + |
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Preference number: 3 (lower is better) Translates to: LLSGNMLFRNCCRCFSLALPSSL*GLQVCY Trigger: ATAGCACACCTGTAATCCCAACAGGGAAGAAGGGAG...TGCTAATGAGAAACACCGGCAGCAATTCCTAAAGAGCATATTCCCAGATAAGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR TCA 72 bp | AGCATTCTACTTGCAGTTGGGTTTTTGAATAGGACCTaGTGCTGCTCAGGCAAGTGTCTCGCTTATACACAG | + |
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Preference number: 3 (lower is better) Translates to: SILLAVGFLNRT*CCSGKCLAYTQ Trigger: CTGTGTATAAGCGAGACACTTGCCTGAGCAGCATCAGGTCCTATTCAAAAACCCAACTGCAAGTAGAATGCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR CCA 72 bp | GCTTCCGTGCGAGTTCAGGAACATGCTTCTTTCTCCTaGCCGACAATAAACTCGCATCAGATAAAGTTCATT | + |
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Preference number: 3 (lower is better) Translates to: ASVRVQEHASFS*PTINSHQIKFI Trigger: AATGAACTTTATCTGATGCGAGTTTATTGTCGGCCAGGAGAAAGAAGCATGTTCCTGAACTCGCACGGAAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR TCA 72 bp | TGTTTCTCATTAGCATTCTACTTGCAGTTGGGTTTTTaGATAGGACCTGATGCTGCTCAGGCAAGTGTCTCG | + |
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Preference number: 3 (lower is better) Translates to: CFSLAFYLQLGF*IGPDAAQASVS Trigger: CGAGACACTTGCCTGAGCAGCATCAGGTCCTATTCAAAAACCCAACTGCAAGTAGAATGCTAATGAGAAACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR-3UTR CAA 90 bp | CCACTAACTGTGATTTCAGTGTTTAAGTTTACCATCCTTTGGCGTTTTGGTTTGCCATCCTCTATCCTGTaGCAGCTCACTAGCACATCT | + |
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Preference number: 3 (lower is better) Translates to: PLTVISVFKFTILWRFGLPSSIL*QLTSTS Trigger: AGATGTGCTAGTGAGCTGCAACAGGATAGAGGATGG...CAAACCAAAACGCCAAAGGATGGTAAACTTAAACACTGAAATCACAGTTAGTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR GCA 72 bp | TCACTCTTATCTGGGAATATGCTCTTTAGGAATTGCTaGCGGTGTTTCTCATTAGCATTCTACTTGCAGTTG | + |
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Preference number: 3 (lower is better) Translates to: SLLSGNMLFRNC*RCFSLAFYLQL Trigger: CAACTGCAAGTAGAATGCTAATGAGAAACACCGGCAGCAATTCCTAAAGAGCATATTCCCAGATAAGAGTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR-3UTR CAA 90 bp | CTCTTATCTGGGAATATGCTCTTTAGGAATTGCTGCCGGTGTTTCTCATTAGCAACCATCAATTCATACTaGTCTCTAGACCCATTAACC | + |
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Preference number: 3 (lower is better) Translates to: LLSGNMLFRNCCRCFSLATINSY*SLDPLT Trigger: GGTTAATGGGTCTAGAGACAAGTATGAATTGATGGT...TGCTAATGAGAAACACCGGCAGCAATTCCTAAAGAGCATATTCCCAGATAAGAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR CCA 72 bp | CTAACTGTGATTTCAGTGTTTAAGTTTACCATCCTTTaGCGTTTTGGTTTGTGTAGGCACATGCATATCTTA | + |
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Preference number: 3 (lower is better) Translates to: LTVISVFKFTIL*RFGLCRHMHIL Trigger: TAAGATATGCATGTGCCTACACAAACCAAAACGCCAAAGGATGGTAAACTTAAACACTGAAATCACAGTTAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| CDS-3UTR CCA 90 bp | CCTAGGCTGTGGGAGCAGCCACTGTGGGTGAGTCATGCCAACATAACCAGCTTCGTGTCGGAGCTGGCGTaGATGGGGTCGGGGCTGAAG | + |
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Preference number: 4 (lower is better) Translates to: PRLWEQPLWVSHANITSFVSELA*MGSGLK Trigger: CTTCAGCCCCGACCCCATCCACGCCAGCTCCGACAC...GAAGCTGGTTATGTTGGCATGACTCACCCACAGTGGCTGCTCCCACAGCCTAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| CDS-3UTR GCA 90 bp | GGCTTCCGTGCGAGTTCAGGAACATGCTTCTTTCTCCTGGCCGACAATAAACTCGGTCTGGCCCGGGGCTaGAGGCGCAGCTACAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: GFRASSGTCFFLLADNKLGLARG*RRSYSR Trigger: CCTGCTGTAGCTGCGCCTGCAGCCCCGGGCCAGACC...GAGTTTATTGTCGGCCAGGAGAAAGAAGCATGTTCCTGAACTCGCACGGAAGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| CDS-3UTR CCA 90 bp | CTCTTATCTGGGAATATGCTCTTTAGGAATTGCTGCCGGTGTTTCTCATTAGCAAGCCGGTGTCGGAGCTaGCGTGGATGGGGTCGGGGC | + |
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Preference number: 4 (lower is better) Translates to: LLSGNMLFRNCCRCFSLASRCRS*RGWGRG Trigger: GCCCCGACCCCATCCACGCCAGCTCCGACACCGGCT...TGCTAATGAGAAACACCGGCAGCAATTCCTAAAGAGCATATTCCCAGATAAGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| CDS-3UTR CCA 90 bp | CAGCCACTAACTGTGATTTCAGTGTTTAAGTTTACCATCCTTTGGCGTTTTGGTCGTCTGCGCTGGGGCTaGCGCGGAGGCTGGGGTCTG | + |
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Preference number: 4 (lower is better) Translates to: QPLTVISVFKFTILWRFGRLRWG*RGGWGL Trigger: CAGACCCCAGCCTCCGCGCCAGCCCCAGCGCAGACG...ACCAAAACGCCAAAGGATGGTAAACTTAAACACTGAAATCACAGTTAGTGGCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| CDS-3UTR GCA 90 bp | TCTCCCCACAGTGCCCACTCCCTGGCTTCCGTGCGAGTTCAGGAACATGCTTCTCATACTGTAATACAGTaGTTAGAGCATCCTGGATGC | + |
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Preference number: 4 (lower is better) Translates to: SPHSAHSLASVRVQEHASHTVIQ*LEHPGC Trigger: GCATCCAGGATGCTCTAAGCACTGTATTACAGTATG...AGAAGCATGTTCCTGAACTCGCACGGAAGCCAGGGAGTGGGCACTGTGGGGAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR CAA 72 bp | TCTCTAGGTCCTTCCACACTGCACAAGGCAAATCTCTaGACTGCCATTCCAGGTAAGATGTTATGGAAGAAA | + |
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Preference number: 4 (lower is better) Translates to: SLGPSTLHKANL*TAIPGKMLWKK Trigger: TTTCTTCCATAACATCTTACCTGGAATGGCAGTCAAGAGATTTGCCTTGTGCAGTGTGGAAGGACCTAGAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| CDS-3UTR TCA 90 bp | CTGGCCGACAATAAACTCGCATCAGATAAAGTTCATTTACAAAAGGTAAGCTATCCGAAAAGCAGTTGGTaGCTTCTACCGAGTGCTTGT | + |
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Preference number: 4 (lower is better) Translates to: LADNKLASDKVHLQKVSYPKSSW*LLPSAC Trigger: ACAAGCACTCGGTAGAAGTCACCAACTGCTTTTCGG...ATAGCTTACCTTTTGTAAATGAACTTTATCTGATGCGAGTTTATTGTCGGCCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| CDS-3UTR GCA 90 bp | CCACTAACTGTGATTTCAGTGTTTAAGTTTACCATCCTTTGGCGTTTTGGTTTGGTGACTTCTACCGAGTaGTTGTCAACAGTTCCCAAC | + |
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Preference number: 4 (lower is better) Translates to: PLTVISVFKFTILWRFGLVTSTE*LSTVPN Trigger: GTTGGGAACTGTTGACAAGCACTCGGTAGAAGTCAC...CAAACCAAAACGCCAAAGGATGGTAAACTTAAACACTGAAATCACAGTTAGTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| 3UTR CAA 72 bp | TCAGTGTTTAAGTTTACCATCCTTTGGCGTTTTGGTTaGTGTAGGCACATGCATATCTTACACGTGTCTGTA | + |
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Preference number: 4 (lower is better) Translates to: SVFKFTILWRFG*CRHMHILHVSV Trigger: TACAGACACGTGTAAGATATGCATGTGCCTACACAAACCAAAACGCCAAAGGATGGTAAACTTAAACACTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| CDS-3UTR CAA 90 bp | TCTCCCCACAGTGCCCACTCCCTGGCTTCCGTGCGAGTTCAGGAACATGCTTCTACTTCTACCGAGTGCTaGTCAACAGTTCCCAACAGG | + |
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Preference number: 5 (lower is better) Translates to: SPHSAHSLASVRVQEHASTSTEC*STVPNR Trigger: CCTGTTGGGAACTGTTGACAAGCACTCGGTAGAAGT...AGAAGCATGTTCCTGAACTCGCACGGAAGCCAGGGAGTGGGCACTGTGGGGAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| CDS GCA 72 bp | CGGGGCTGCGGTGACGACCGGCGCCGGGGCTGCGGCTaGAGTGGCAGGAGGGACATTAGCCGGTACGGCCGG | + |
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Preference number: 6 (lower is better) Translates to: RGCGDDRRRGCG*SGRRDISRYGR Trigger: CCGGCCGTACCGGCTAATGTCCCTCCTGCCACTGCAGCCGCAGCCCCGGCGCCGGTCGTCACCGCAGCCCCG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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| CDS TCA 72 bp | TGCTCATGCGCCCATGCTGGAGACCTGTGTCCACCGTaGGGTGAATGGGGTTCGGGGCCTCCCTGCTGTAGT | + |
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Preference number: 6 (lower is better) Translates to: CSCAHAGDLCPP*GEWGSGPPCCS Trigger: ACTACAGCAGGGAGGCCCCGAACCCCATTCACCTCACGGTGGACACAGGTCTCCAGCATGGGCGCATGAGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033342.7 |
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