Pregenerated sensors for EIF3C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030738Ensembl transcript IDs: ENSMUST00000032992.7, ENSMUST00000180459.3
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CATGTCCAGTGCATCGTGCATCTGAACCTTGTATCTGTCCTGTGGTaGAAACTCAGGAACATAATTGGCAAATGGGTCCAAGGCAGCTCT | + |
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Preference number: 1 (lower is better) Translates to: HVQCIVHLNLVSVLW*KLRNIIGKWVQGSS Trigger: AGAGCTGCCTTGGACCCATTTGCCAATTATGTTCCTGAGTTTCCACCACAGGACAGATACAAGGTTCAGATGCACGATGCACTGGACATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032992.7 |
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| 3UTR-3UTR CCA 90 bp | GAACCTTGTATCTGTCCTGTGGTGGAAACTCAGGAACATAATTGGCAAATGGGTGAGCAAAAGGCTAGATaGTCTGTTCACAGGGTGACT | + |
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Preference number: 2 (lower is better) Translates to: EPCICPVVETQEHNWQMGEQKAR*SVHRVT Trigger: AGTCACCCTGTGAACAGACCATCTAGCCTTTTGCTC...ACCCATTTGCCAATTATGTTCCTGAGTTTCCACCACAGGACAGATACAAGGTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032992.7 |
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| 3UTR-3UTR CCA 90 bp | TCTGTACATCTGCAGCCATATTGTTCAATATACCTATCTCCTTCATATTCTTGTAACATAATTGGCAAATaGGTCCAAGGCAGCTCTCTG | + |
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Preference number: 2 (lower is better) Translates to: SVHLQPYCSIYLSPSYSCNIIGK*VQGSSL Trigger: CAGAGAGCTGCCTTGGACCCATTTGCCAATTATGTT...ACAAGAATATGAAGGAGATAGGTATATTGAACAATATGGCTGCAGATGTACAGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032992.7 |
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| 3UTR-3UTR GCA 90 bp | TATTTATTTCACATAGGTGAGTACACTGTCACTGTCTTCAGACACACTAGAAGATACCTTCTGTACATCTaGAGCCATATTGTTCAATAT | + |
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Preference number: 2 (lower is better) Translates to: YLFHIGEYTVTVFRHTRRYLLYI*SHIVQY Trigger: ATATTGAACAATATGGCTGCAGATGTACAGAAGGTA...TCTTCTAGTGTGTCTGAAGACAGTGACAGTGTACTCACCTATGTGAAATAAATA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032992.7 |
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| 3UTR CCA 72 bp | GTCCTGTGGTGGAAACTCAGGAACATAATTGGCAAATaGGTCCAAGGCAGCTCTCTGGCAGCGAGCAGACAA | + |
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Preference number: 3 (lower is better) Translates to: VLWWKLRNIIGK*VQGSSLAASRQ Trigger: TTGTCTGCTCGCTGCCAGAGAGCTGCCTTGGACCCATTTGCCAATTATGTTCCTGAGTTTCCACCACAGGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032992.7 |
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| 3UTR CCA 72 bp | TGTATCTGTCCTGTGGTGGAAACTCAGGAACATAATTaGCAAATGGGTCCAAGGCAGCTCTCTGGCAGCGAG | + |
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Preference number: 3 (lower is better) Translates to: CICPVVETQEHN*QMGPRQLSGSE Trigger: CTCGCTGCCAGAGAGCTGCCTTGGACCCATTTGCCAATTATGTTCCTGAGTTTCCACCACAGGACAGATACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032992.7 |
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| 3UTR CCA 72 bp | CAGTGCATCGTGCATCTGAACCTTGTATCTGTCCTGTaGTGGAAACTCAGGAACATAATTGGCAAATGGGTC | + |
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Preference number: 3 (lower is better) Translates to: QCIVHLNLVSVL*WKLRNIIGKWV Trigger: GACCCATTTGCCAATTATGTTCCTGAGTTTCCACCACAGGACAGATACAAGGTTCAGATGCACGATGCACTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032992.7 |
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| 3UTR CCA 72 bp | TTCTTCCTGCCTGATAAATCACCACCTACCCAACTCTaGGCCCATTATACCTTCTGTACATCTGCAGCCATA | + |
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Preference number: 3 (lower is better) Translates to: FFLPDKSPPTQL*AHYTFCTSAAI Trigger: TATGGCTGCAGATGTACAGAAGGTATAATGGGCCCAGAGTTGGGTAGGTGGTGATTTATCAGGCAGGAAGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032992.7 |
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| 3UTR CCA 72 bp | AATAATTTCTCAATGCTTACTTGTGATTATGGTACGTaGCCTACACTAGTTAACAGTGAATCTGATACCAGT | + |
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Preference number: 3 (lower is better) Translates to: NNFSMLTCDYGT*PTLVNSESDTS Trigger: ACTGGTATCAGATTCACTGTTAACTAGTGTAGGCCACGTACCATAATCACAAGTAAGCATTGAGAAATTATT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032992.7 |
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| CDS-3UTR CCA 90 bp | GAACCTTGTATCTGTCCTGTGGTGGAAACTCAGGAACATAATTGGCAAATGGGTCATCTGCCACATCTCTaGCTTCATGTACGTGGCCAG | + |
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Preference number: 4 (lower is better) Translates to: EPCICPVVETQEHNWQMGHLPHL*LHVRGQ Trigger: CTGGCCACGTACATGAAGCCAGAGATGTGGCAGATG...ACCCATTTGCCAATTATGTTCCTGAGTTTCCACCACAGGACAGATACAAGGTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032992.7 |
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| CDS-3UTR CCA 90 bp | CTGCCTGATAAATCACCACCTACCCAACTCTGGGCCCATTATACCTTCTGTACACTGAATCAGAAGATGTaGAGCTGGTGTCCCATTCTT | + |
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Preference number: 4 (lower is better) Translates to: LPDKSPPTQLWAHYTFCTLNQKM*SWCPIL Trigger: AAGAATGGGACACCAGCTCCACATCTTCTGATTCAG...TGTACAGAAGGTATAATGGGCCCAGAGTTGGGTAGGTGGTGATTTATCAGGCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032992.7 |
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| CDS-3UTR TCA 90 bp | GAACCTTGTATCTGTCCTGTGGTGGAAACTCAGGAACATAATTGGCAAATGGGTTTTTCAGCAGCAATCTaGACCAGCAGCTGGAGCAAT | + |
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Preference number: 4 (lower is better) Translates to: EPCICPVVETQEHNWQMGFSAAI*TSSWSN Trigger: ATTGCTCCAGCTGCTGGTTCAGATTGCTGCTGAAAA...ACCCATTTGCCAATTATGTTCCTGAGTTTCCACCACAGGACAGATACAAGGTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032992.7 |
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| CDS-3UTR TCA 90 bp | ATCTGTCCTGTGGTGGAAACTCAGGAACATAATTGGCAAATGGGTCCAAGGCAGTGTCTCCATACTGATTaGGTCATAGACACTGCTGTA | + |
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Preference number: 4 (lower is better) Translates to: ICPVVETQEHNWQMGPRQCLHTD*VIDTAV Trigger: TACAGCAGTGTCTATGACTCAATCAGTATGGAGACA...CTGCCTTGGACCCATTTGCCAATTATGTTCCTGAGTTTCCACCACAGGACAGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032992.7 |
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| CDS-3UTR GCA 90 bp | ATCTGTCCTGTGGTGGAAACTCAGGAACATAATTGGCAAATGGGTCCAAGGCAGTTCCTCATTCTTTTCTaGATCTTCATCTGCAGACTG | + |
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Preference number: 4 (lower is better) Translates to: ICPVVETQEHNWQMGPRQFLILF*IFICRL Trigger: CAGTCTGCAGATGAAGATGCAGAAAAGAATGAGGAA...CTGCCTTGGACCCATTTGCCAATTATGTTCCTGAGTTTCCACCACAGGACAGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032992.7 |
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| CDS-3UTR GCA 90 bp | GAACCTTGTATCTGTCCTGTGGTGGAAACTCAGGAACATAATTGGCAAATGGGTTTTTCTGCCTGGTCTTaGTCAGACTTTGAGGATCCT | + |
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Preference number: 4 (lower is better) Translates to: EPCICPVVETQEHNWQMGFSAWS*SDFEDP Trigger: AGGATCCTCAAAGTCTGAGCAAGACCAGGCAGAAAA...ACCCATTTGCCAATTATGTTCCTGAGTTTCCACCACAGGACAGATACAAGGTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032992.7 |
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| CDS-3UTR TCA 90 bp | CTGCCTGATAAATCACCACCTACCCAACTCTGGGCCCATTATACCTTCTGTACACTTTTTAAGGAACTTTaGGGCCAGAACAGTTTGTTT | + |
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Preference number: 4 (lower is better) Translates to: LPDKSPPTQLWAHYTFCTLFKEL*GQNSLF Trigger: AAACAAACTGTTCTGGCCTCAAAGTTCCTTAAAAAG...TGTACAGAAGGTATAATGGGCCCAGAGTTGGGTAGGTGGTGATTTATCAGGCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032992.7 |
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| CDS-3UTR TCA 90 bp | GCAGCTCTCTGGCAGCGAGCAGACAACAAGCAACTATATAAATTCTCAACAGATTATCCATCAGTTCATTaGTGCAGTCTAGGCACATCT | + |
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Preference number: 4 (lower is better) Translates to: AALWQRADNKQLYKFSTDYPSVH*CSLGTS Trigger: AGATGTGCCTAGACTGCATCAATGAACTGATGGATA...ATCTGTTGAGAATTTATATAGTTGCTTGTTGTCTGCTCGCTGCCAGAGAGCTGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032992.7 |
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| CDS-3UTR GCA 90 bp | GTAACATGTTATGACATTTTCCTGCTGATGTCAAAGAGCAGCAACTCTTTGAAGCAGTCTAGGCACATCTaGCACATCTCTGGCTTCATG | + |
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Preference number: 4 (lower is better) Translates to: VTCYDIFLLMSKSSNSLKQSRHI*HISGFM Trigger: CATGAAGCCAGAGATGTGGCAGATGTGCCTAGACTG...CTTCAAAGAGTTGCTGCTCTTTGACATCAGCAGGAAAATGTCATAACATGTTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032992.7 |
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| CDS-3UTR GCA 90 bp | GTAACATGTTATGACATTTTCCTGCTGATGTCAAAGAGCAGCAACTCTTTGAAGTATTCTCCACTAGGCTaGCAAGCTTCTCAGCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: VTCYDIFLLMSKSSNSLKYSPLG*QASQPA Trigger: AGCTGGCTGAGAAGCTTGGCAGCCTAGTGGAGAATA...CTTCAAAGAGTTGCTGCTCTTTGACATCAGCAGGAAAATGTCATAACATGTTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032992.7 |
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| CDS-3UTR CCA 90 bp | CTGCCTGATAAATCACCACCTACCCAACTCTGGGCCCATTATACCTTCTGTACACTTGGCAAACATTTTTaGCTTTTCCTTAACAAGTGG | + |
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Preference number: 4 (lower is better) Translates to: LPDKSPPTQLWAHYTFCTLGKHF*LFLNKW Trigger: CCACTTGTTAAGGAAAAGCCAAAAATGTTTGCCAAG...TGTACAGAAGGTATAATGGGCCCAGAGTTGGGTAGGTGGTGATTTATCAGGCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032992.7 |
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| CDS-3UTR TCA 90 bp | TATTTATTTCACATAGGTGAGTACACTGTCACTGTCTTCAGACACACTAGAAGAGTCTTGCTCAGACTTTaGGGATCCTTCAGGAGGAGT | + |
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Preference number: 4 (lower is better) Translates to: YLFHIGEYTVTVFRHTRRVLLRL*GSFRRS Trigger: ACTCCTCCTGAAGGATCCTCAAAGTCTGAGCAAGAC...TCTTCTAGTGTGTCTGAAGACAGTGACAGTGTACTCACCTATGTGAAATAAATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032992.7 |
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| CDS-3UTR GCA 90 bp | TATTTATTTCACATAGGTGAGTACACTGTCACTGTCTTCAGACACACTAGAAGAAGTACGTGTGCAGGATaGGCCTTAAGTAGATCTGGC | + |
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Preference number: 4 (lower is better) Translates to: YLFHIGEYTVTVFRHTRRSTCAG*ALSRSG Trigger: GCCAGATCTACTTAAGGCGCATCCTGCACACGTACT...TCTTCTAGTGTGTCTGAAGACAGTGACAGTGTACTCACCTATGTGAAATAAATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032992.7 |
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| CDS-3UTR TCA 90 bp | TATTTATTTCACATAGGTGAGTACACTGTCACTGTCTTCAGACACACTAGAAGATTCTTCCTCAGAGTCTaGATCAGAAGATGTGGAGCT | + |
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Preference number: 4 (lower is better) Translates to: YLFHIGEYTVTVFRHTRRFFLRV*IRRCGA Trigger: AGCTCCACATCTTCTGATTCAGACTCTGAGGAAGAA...TCTTCTAGTGTGTCTGAAGACAGTGACAGTGTACTCACCTATGTGAAATAAATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032992.7 |
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| CDS-3UTR GCA 90 bp | GTAACATGTTATGACATTTTCCTGCTGATGTCAAAGAGCAGCAACTCTTTGAAGCTGAATATCCAGAAGTaGATTGTGTGCATCCTTTGT | + |
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Preference number: 4 (lower is better) Translates to: VTCYDIFLLMSKSSNSLKLNIQK*IVCILC Trigger: ACAAAGGATGCACACAATGCACTTCTGGATATTCAG...CTTCAAAGAGTTGCTGCTCTTTGACATCAGCAGGAAAATGTCATAACATGTTAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032992.7 |
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| 3UTR CAA 72 bp | TGGGCCCATTATACCTTCTGTACATCTGCAGCCATATaGTTCAATATACCTATCTCCTTCATATTCTTGTTG | + |
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Preference number: 4 (lower is better) Translates to: WAHYTFCTSAAI*FNIPISFIFLL Trigger: CAACAAGAATATGAAGGAGATAGGTATATTGAACAATATGGCTGCAGATGTACAGAAGGTATAATGGGCCCA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032992.7 |
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| CDS-3UTR CAA 90 bp | GGGCATGTCCAGTGCATCGTGCATCTGAACCTTGTATCTGTCCTGTGGTGGAAAGTATCCATCAGTTCATaGATGCAGTCTAGGCACATC | + |
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Preference number: 5 (lower is better) Translates to: GHVQCIVHLNLVSVLWWKVSISS*MQSRHI Trigger: GATGTGCCTAGACTGCATCAATGAACTGATGGATAC...TTTCCACCACAGGACAGATACAAGGTTCAGATGCACGATGCACTGGACATGCCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032992.7 |
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| CDS-3UTR CAA 90 bp | ATCTGTCCTGTGGTGGAAACTCAGGAACATAATTGGCAAATGGGTCCAAGGCAGCCTTGGCACGACCACTaGACTGAATATCCAGAAGTG | + |
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Preference number: 5 (lower is better) Translates to: ICPVVETQEHNWQMGPRQPWHDH*TEYPEV Trigger: CACTTCTGGATATTCAGTCAAGTGGTCGTGCCAAGG...CTGCCTTGGACCCATTTGCCAATTATGTTCCTGAGTTTCCACCACAGGACAGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032992.7 |
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| CDS-3UTR CAA 90 bp | GGGCATGTCCAGTGCATCGTGCATCTGAACCTTGTATCTGTCCTGTGGTGGAAACTCAGAGCCTTGGCGTaGTTTTTATTCATCTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: GHVQCIVHLNLVSVLWWKLRALA*FLFIFF Trigger: GAAGAAGATGAATAAAAACAACGCCAAGGCTCTGAG...TTTCCACCACAGGACAGATACAAGGTTCAGATGCACGATGCACTGGACATGCCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032992.7 |
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| CDS-3UTR CAA 90 bp | GAACCTTGTATCTGTCCTGTGGTGGAAACTCAGGAACATAATTGGCAAATGGGTCGGTCTGTTCCCTTCTaGCCTCTGACCTGTAGAATC | + |
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Preference number: 5 (lower is better) Translates to: EPCICPVVETQEHNWQMGRSVPF*PLTCRI Trigger: GATTCTACAGGTCAGAGGCAAGAAGGGAACAGACCG...ACCCATTTGCCAATTATGTTCCTGAGTTTCCACCACAGGACAGATACAAGGTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032992.7 |
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| CDS CCA 90 bp | CAGTTTGTTTTCCTTCTTCTTCCTCAGAGTCTGAATCAGAAGATGTaGAGCTGGTGTCCCATTCTTCATCTTCAGAATCTTCAGAGTCCT | + |
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Preference number: 5 (lower is better) Translates to: QFVFLLLPQSLNQKM*SWCPILHLQNLQSP Trigger: AGGACTCTGAAGATTCTGAAGATGAAGAATGGGACACCAGCTCCACATCTTCTGATTCAGACTCTGAGGAAGAAGAAGGAAAACAAACTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032992.7 ENSMUST00000180459.3 |
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| CDS-3UTR CAA 90 bp | GTAACATGTTATGACATTTTCCTGCTGATGTCAAAGAGCAGCAACTCTTTGAAGTCATCTTCCATCTTTTaGTGGAACTTCCGACTCTCT | + |
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Preference number: 5 (lower is better) Translates to: VTCYDIFLLMSKSSNSLKSSSIF*WNFRLS Trigger: AGAGAGTCGGAAGTTCCACAAAAAGATGGAAGATGA...CTTCAAAGAGTTGCTGCTCTTTGACATCAGCAGGAAAATGTCATAACATGTTAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032992.7 |
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| CDS-3UTR CAA 90 bp | GTAACATGTTATGACATTTTCCTGCTGATGTCAAAGAGCAGCAACTCTTTGAAGCTCTCCAGAAGATTCTaGCTTCTTCTTCAAGAAAGT | + |
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Preference number: 5 (lower is better) Translates to: VTCYDIFLLMSKSSNSLKLSRRF*LLLQES Trigger: ACTTTCTTGAAGAAGAAGCAAGAATCTTCTGGAGAG...CTTCAAAGAGTTGCTGCTCTTTGACATCAGCAGGAAAATGTCATAACATGTTAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032992.7 |
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| CDS TCA 72 bp | GTCCTCCTCTGTAGTGGGTGCCTTTTTAAGGAACTTTaGGGCCAGAACAGTTTGTTTTCCTTCTTCTTCCTC | + |
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Preference number: 6 (lower is better) Translates to: VLLCSGCLFKEL*GQNSLFSFFFL Trigger: GAGGAAGAAGAAGGAAAACAAACTGTTCTGGCCTCAAAGTTCCTTAAAAAGGCACCCACTACAGAGGAGGAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032992.7 |
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| CDS CAA 72 bp | GAATCTTCAGAGTCCTCATCATCATCTTCCATCTTTTaGTGGAACTTCCGACTCTCTCCAGAAGATTCTTGC | + |
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Preference number: 6 (lower is better) Translates to: ESSESSSSSSIF*WNFRLSPEDSC Trigger: GCAAGAATCTTCTGGAGAGAGTCGGAAGTTCCACAAAAAGATGGAAGATGATGATGAGGACTCTGAAGATTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032992.7 ENSMUST00000180459.3 |
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