RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for EIF2B2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000004788

Ensembl transcript IDs: ENSMUST00000004910.12, ENSMUST00000136495.3, ENSMUST00000140900.8

Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ACACAGCCTGAGTGGCTCCAAAATCCCCAGGTAAGCGAGCCCTGCTaGTCAGCTAAGCCTGGAAGGCAGGAGCAGTCCTGGACGCACTCA +
Preference number: 1 (lower is better)
Translates to: TQPEWLQNPQVSEPC*SAKPGRQEQSWTHS
Trigger: TGAGTGCGTCCAGGACTGCTCCTGCCTTCCAGGCTTAGCTGAGCAGCAGGGCTCGCTTACCTGGGGATTTTGGAGCCACTCAGGCTGTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
3UTR CCA 90 bp AGCGAGCCCTGCTGCTCAGCTAAGCCTGGAAGGCAGGAGCAGTCCTaGACGCACTCATCACTGGAGATGAGCAGGAAGGCAGGAGACACT +
Preference number: 1 (lower is better)
Translates to: SEPCCSAKPGRQEQS*THSSLEMSRKAGDT
Trigger: AGTGTCTCCTGCCTTCCTGCTCATCTCCAGTGATGAGTGCGTCCAGGACTGCTCCTGCCTTCCAGGCTTAGCTGAGCAGCAGGGCTCGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
3UTR-3UTR CCA 90 bp AGACAGAGAAGGGGCCACTCTGACGCTTCAGTCCATTCAGAGCTCAGAACAATACAAACACAGCCTGAGTaGCTCCAAAATCCCCAGGTA +
Preference number: 2 (lower is better)
Translates to: RQRRGHSDASVHSELRTIQTQPE*LQNPQV
Trigger: TACCTGGGGATTTTGGAGCCACTCAGGCTGTGTTTG...TATTGTTCTGAGCTCTGAATGGACTGAAGCGTCAGAGTGGCCCCTTCTCTGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
3UTR-3UTR TCA 90 bp GCAAAAGGTCTGGAAGGCATTTCTGAGCAAACACCAACCCAGCAAAGTAGTCATACTCATCACTGGAGATaGGCAGGAAGGCAGGAGACA +
Preference number: 2 (lower is better)
Translates to: AKGLEGISEQTPTQQSSHTHHWR*AGRQET
Trigger: TGTCTCCTGCCTTCCTGCTCATCTCCAGTGATGAGT...ATGACTACTTTGCTGGGTTGGTGTTTGCTCAGAAATGCCTTCCAGACCTTTTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
3UTR-3UTR CCA 90 bp GAGCTCAGAACAATAAACGAACTTGAGGAGTTTCCAGTAGCTTTTATTGGCAAAACTGAGGGCTCAGGCTaGCCTCCCCTCCCCACTGTA +
Preference number: 2 (lower is better)
Translates to: ELRTINELEEFPVAFIGKTEGSG*PPLPTV
Trigger: TACAGTGGGGAGGGGAGGCCAGCCTGAGCCCTCAGT...TTTGCCAATAAAAGCTACTGGAAACTCCTCAAGTTCGTTTATTGTTCTGAGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
3UTR GCA 72 bp GAGTGGCTCCAAAATCCCCAGGTAAGCGAGCCCTGCTaGTCAGCTAAGCCTGGAAGGCAGGAGCAGTCCTGG +
Preference number: 3 (lower is better)
Translates to: EWLQNPQVSEPC*SAKPGRQEQSW
Trigger: CCAGGACTGCTCCTGCCTTCCAGGCTTAGCTGAGCAGCAGGGCTCGCTTACCTGGGGATTTTGGAGCCACTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
3UTR CCA 72 bp TGCTGCTCAGCTAAGCCTGGAAGGCAGGAGCAGTCCTaGACGCACTCATCACTGGAGATGAGCAGGAAGGCA +
Preference number: 3 (lower is better)
Translates to: CCSAKPGRQEQS*THSSLEMSRKA
Trigger: TGCCTTCCTGCTCATCTCCAGTGATGAGTGCGTCCAGGACTGCTCCTGCCTTCCAGGCTTAGCTGAGCAGCA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
3UTR CCA 72 bp AGAAGGTTGAAGTTCCTGAAGCAAACACAGCCTGAGTaGCTCCAAAATCCCCAGGTAAGCGAGCCCTGCTGC +
Preference number: 3 (lower is better)
Translates to: RRLKFLKQTQPE*LQNPQVSEPCC
Trigger: GCAGCAGGGCTCGCTTACCTGGGGATTTTGGAGCCACTCAGGCTGTGTTTGCTTCAGGAACTTCAACCTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
3UTR TCA 72 bp ACCACAGCCTCTATGCAGACAGAGAAGGGGCCACTCTaGCGCTTCAGTCCATTCAGAGCTCAGAACAATAAA +
Preference number: 3 (lower is better)
Translates to: TTASMQTEKGPL*RFSPFRAQNNK
Trigger: TTTATTGTTCTGAGCTCTGAATGGACTGAAGCGTCAGAGTGGCCCCTTCTCTGTCTGCATAGAGGCTGTGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
3UTR TCA 72 bp TTCAGTCCATTCAGAGCTCAGAACAATAAACGAACTTaGGGAGTTTCCAGTAGCTTTTATTGGCAAAAGGTC +
Preference number: 3 (lower is better)
Translates to: FSPFRAQNNKRT*GVSSSFYWQKV
Trigger: GACCTTTTGCCAATAAAAGCTACTGGAAACTCCTCAAGTTCGTTTATTGTTCTGAGCTCTGAATGGACTGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
CDS-3UTR GCA 90 bp GCAGGAGACACTGAGGGCTCAGGCTGGCCTCCCCTCCCCACTGTAGCAGCAATGGTGGTCTCGGAGGGCTaGGCAGCCGTCATCCTCCTG +
Preference number: 4 (lower is better)
Translates to: AGDTEGSGWPPLPTVAAMVVSEG*AAVILL
Trigger: CAGGAGGATGACGGCTGCGCAGCCCTCCGAGACCAC...CATTGCTGCTACAGTGGGGAGGGGAGGCCAGCCTGAGCCCTCAGTGTCTCCTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
CDS-3UTR CCA 90 bp CTGGCCTCCCCTCCCCACTGTAGCAGCAATGCTGTGTCTCCACTCCACTCTGGGCCCGCGTTGTTCCAGTaGTGGTCCGTGATAAGCCGG +
Preference number: 4 (lower is better)
Translates to: LASPPHCSSNAVSPLHSGPALFQ*WSVISR
Trigger: CCGGCTTATCACGGACCACCACTGGAACAACGCGGG...CCCAGAGTGGAGTGGAGACACAGCATTGCTGCTACAGTGGGGAGGGGAGGCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
CDS-3UTR TCA 90 bp CAGCCTGAGTGGCTCCAAAATCCCCAGGTAAGCGAGCCCTGCTGCTCAGCTAAGTGCAGGGACTCCTGCTaGTCGCTCTCGTCACTGCGC +
Preference number: 4 (lower is better)
Translates to: QPEWLQNPQVSEPCCSAKCRDSC*SLSSLR
Trigger: GCGCAGTGACGAGAGCGATCAGCAGGAGTCCCTGCA...CTTAGCTGAGCAGCAGGGCTCGCTTACCTGGGGATTTTGGAGCCACTCAGGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
CDS-3UTR GCA 90 bp TATGCAGACAGAGAAGGGGCCACTCTGACGCTTCAGTCCATTCAGAGCTCAGAATCCTCCGAGCTGCGCTaGCCGCCACCTCGCTTCAGA +
Preference number: 4 (lower is better)
Translates to: YADREGATLTLQSIQSSESSELR*PPPRFR
Trigger: TCTGAAGCGAGGTGGCGGGCAGCGCAGCTCGGAGGA...TTCTGAGCTCTGAATGGACTGAAGCGTCAGAGTGGCCCCTTCTCTGTCTGCATA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
CDS-3UTR GCA 90 bp AAGCAAACACAGCCTGAGTGGCTCCAAAATCCCCAGGTAAGCGAGCCCTGCTGCCAGCCGTCATCCTCCTaGCCTCTCTGCGGATCAAAT +
Preference number: 4 (lower is better)
Translates to: KQTQPEWLQNPQVSEPCCQPSSS*PLCGSN
Trigger: ATTTGATCCGCAGAGAGGGCAGGAGGATGACGGCTG...GCAGCAGGGCTCGCTTACCTGGGGATTTTGGAGCCACTCAGGCTGTGTTTGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
CDS-3UTR GCA 90 bp TGCAGACAGAGAAGGGGCCACTCTGACGCTTCAGTCCATTCAGAGCTCAGAACAGGAGTGGTGTTTCGCTaGCAGGGCCAGGGTGTGTGT +
Preference number: 4 (lower is better)
Translates to: CRQRRGHSDASVHSELRTGVVFR*QGQGVC
Trigger: ACACACACCCTGGCCCTGGCAGCGAAACACCACTCC...TGTTCTGAGCTCTGAATGGACTGAAGCGTCAGAGTGGCCCCTTCTCTGTCTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
CDS-3UTR TCA 90 bp TTCCTGAAGCAAACACAGCCTGAGTGGCTCCAAAATCCCCAGGTAAGCGAGCCCGGGCAAAATGGAAGCTaGAATCCTCGCTCAGGCCTC +
Preference number: 4 (lower is better)
Translates to: FLKQTQPEWLQNPQVSEPGQNGS*NPRSGL
Trigger: GAGGCCTGAGCGAGGATTTCAGCTTCCATTTTGCCC...GGGCTCGCTTACCTGGGGATTTTGGAGCCACTCAGGCTGTGTTTGCTTCAGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
CDS-3UTR CCA 90 bp TTCCTGAAGCAAACACAGCCTGAGTGGCTCCAAAATCCCCAGGTAAGCGAGCCCATCACCTCGTTGGAGTaGATGTGCTCCAGAGCCTGG +
Preference number: 4 (lower is better)
Translates to: FLKQTQPEWLQNPQVSEPITSLE*MCSRAW
Trigger: CCAGGCTCTGGAGCACATCCACTCCAACGAGGTGAT...GGGCTCGCTTACCTGGGGATTTTGGAGCCACTCAGGCTGTGTTTGCTTCAGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
CDS-3UTR TCA 90 bp TTCCTGAAGCAAACACAGCCTGAGTGGCTCCAAAATCCCCAGGTAAGCGAGCCCTGGCGGCATCAGTCATaGCAGTTGTCTCGATACCTT +
Preference number: 4 (lower is better)
Translates to: FLKQTQPEWLQNPQVSEPWRHQS*QLSRYL
Trigger: AAGGTATCGAGACAACTGTCATGACTGATGCCGCCA...GGGCTCGCTTACCTGGGGATTTTGGAGCCACTCAGGCTGTGTTTGCTTCAGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
CDS-3UTR CCA 90 bp TGCAGACAGAGAAGGGGCCACTCTGACGCTTCAGTCCATTCAGAGCTCAGAACAATGTGCTCCAGAGCCTaGGCGGCAATGTTCTCCATT +
Preference number: 4 (lower is better)
Translates to: CRQRRGHSDASVHSELRTMCSRA*AAMFSI
Trigger: AATGGAGAACATTGCCGCCCAGGCTCTGGAGCACAT...TGTTCTGAGCTCTGAATGGACTGAAGCGTCAGAGTGGCCCCTTCTCTGTCTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
CDS-3UTR TCA 90 bp CACTCTGACGCTTCAGTCCATTCAGAGCTCAGAACAATAAACGAACTTGAGGAGCAGGACAGTGGACGCTaGCCTTCTCCAGAATGTCTC +
Preference number: 4 (lower is better)
Translates to: HSDASVHSELRTINELEEQDSGR*PSPECL
Trigger: GAGACATTCTGGAGAAGGTCAGCGTCCACTGTCCTG...CTCCTCAAGTTCGTTTATTGTTCTGAGCTCTGAATGGACTGAAGCGTCAGAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
CDS-3UTR CCA 90 bp TGCAGACAGAGAAGGGGCCACTCTGACGCTTCAGTCCATTCAGAGCTCAGAACATTAAGTGGGGCAAAATaGAAGCTGAAATCCTCGCTC +
Preference number: 4 (lower is better)
Translates to: CRQRRGHSDASVHSELRTLSGAK*KLKSSL
Trigger: GAGCGAGGATTTCAGCTTCCATTTTGCCCCACTTAA...TGTTCTGAGCTCTGAATGGACTGAAGCGTCAGAGTGGCCCCTTCTCTGTCTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
CDS-3UTR CCA 90 bp TGGCAAAAGGTCTGGAAGGCATTTCTGAGCAAACACCAACCCAGCAAAGTAGTCGCGGTAGATGTAGGATaGTGCGTTCCCGCCAATGTT +
Preference number: 4 (lower is better)
Translates to: WQKVWKAFLSKHQPSKVVAVDVG*CVPANV
Trigger: AACATTGGCGGGAACGCACCATCCTACATCTACCGC...GACTACTTTGCTGGGTTGGTGTTTGCTCAGAAATGCCTTCCAGACCTTTTGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
CDS-3UTR GCA 90 bp TCAGAGCTCAGAACAATAAACGAACTTGAGGAGTTTCCAGTAGCTTTTATTGGCTCGTTGGAGTGGATGTaGTCCAGAGCCTGGGCGGCA +
Preference number: 4 (lower is better)
Translates to: SELRTINELEEFPVAFIGSLEWM*SRAWAA
Trigger: TGCCGCCCAGGCTCTGGAGCACATCCACTCCAACGA...GCCAATAAAAGCTACTGGAAACTCCTCAAGTTCGTTTATTGTTCTGAGCTCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
CDS-3UTR CCA 90 bp AGAAGGGGCCACTCTGACGCTTCAGTCCATTCAGAGCTCAGAACAATAAACGAATCAAACACAGGACAGTaGACGCTGACCTTCTCCAGA +
Preference number: 4 (lower is better)
Translates to: RRGHSDASVHSELRTINESNTGQ*TLTFSR
Trigger: TCTGGAGAAGGTCAGCGTCCACTGTCCTGTGTTTGA...TTCGTTTATTGTTCTGAGCTCTGAATGGACTGAAGCGTCAGAGTGGCCCCTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
CDS-3UTR TCA 90 bp CACTCTGACGCTTCAGTCCATTCAGAGCTCAGAACAATAAACGAACTTGAGGAGAGTAGCCAATGGTCATaGTCACCTCGTTGGAGTGGA +
Preference number: 4 (lower is better)
Translates to: HSDASVHSELRTINELEESSQWS*SPRWSG
Trigger: TCCACTCCAACGAGGTGATCATGACCATTGGCTACT...CTCCTCAAGTTCGTTTATTGTTCTGAGCTCTGAATGGACTGAAGCGTCAGAGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
CDS-3UTR TCA 90 bp AGACAGAGAAGGGGCCACTCTGACGCTTCAGTCCATTCAGAGCTCAGAACAATAGAATGTCTCCTTCTGTaGAAGGAAGGACTTCTTCAG +
Preference number: 4 (lower is better)
Translates to: RQRRGHSDASVHSELRTIECLLL*KEGLLQ
Trigger: CTGAAGAAGTCCTTCCTTTCACAGAAGGAGACATTC...TATTGTTCTGAGCTCTGAATGGACTGAAGCGTCAGAGTGGCCCCTTCTCTGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
CDS-3UTR GCA 90 bp CACTCTGACGCTTCAGTCCATTCAGAGCTCAGAACAATAAACGAACTTGAGGAGGTAGATGTAGGATGGTaGGTTCCCGCCAATGTTGGA +
Preference number: 4 (lower is better)
Translates to: HSDASVHSELRTINELEEVDVGW*VPANVG
Trigger: TCCAACATTGGCGGGAACGCACCATCCTACATCTAC...CTCCTCAAGTTCGTTTATTGTTCTGAGCTCTGAATGGACTGAAGCGTCAGAGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
CDS-3UTR CCA 90 bp CTCAGAACAATAAACGAACTTGAGGAGTTTCCAGTAGCTTTTATTGGCAAAAGGCCATATTTCCCACGGTaGTCTCGGAGGGCTGCGCAG +
Preference number: 4 (lower is better)
Translates to: LRTINELEEFPVAFIGKRPYFPR*SRRAAQ
Trigger: CTGCGCAGCCCTCCGAGACCACCGTGGGAAATATGG...CCTTTTGCCAATAAAAGCTACTGGAAACTCCTCAAGTTCGTTTATTGTTCTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
CDS-3UTR CCA 90 bp CTCAGAACAATAAACGAACTTGAGGAGTTTCCAGTAGCTTTTATTGGCAAAAGGGCCATTTCATGTCCCTaGCAGAAAGGAGCGCACTCT +
Preference number: 4 (lower is better)
Translates to: LRTINELEEFPVAFIGKRAISCP*QKGAHS
Trigger: AGAGTGCGCTCCTTTCTGCCAGGGACATGAAATGGC...CCTTTTGCCAATAAAAGCTACTGGAAACTCCTCAAGTTCGTTTATTGTTCTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
CDS-3UTR CCA 90 bp GTCCATTCAGAGCTCAGAACAATAAACGAACTTGAGGAGTTTCCAGTAGCTTTTAGGAATCTTCTTCACTaGGGAACTGAGGGGACAGCT +
Preference number: 4 (lower is better)
Translates to: VHSELRTINELEEFPVAFRNLLH*GTEGTA
Trigger: AGCTGTCCCCTCAGTTCCCCAGTGAAGAAGATTCCT...AAAAGCTACTGGAAACTCCTCAAGTTCGTTTATTGTTCTGAGCTCTGAATGGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
CDS GCA 90 bp AGGCGTGGAGTGGTGTTTCGCTGCCAGGGCCAGGGTGTGTGTTCCTaGCACTGCCCTCAGGGAACCGTTGGCCAGGATAGTCTTCGTGCC +
Preference number: 5 (lower is better)
Translates to: RRGVVFRCQGQGVCS*HCPQGTVGQDSLRA
Trigger: GGCACGAAGACTATCCTGGCCAACGGTTCCCTGAGGGCAGTGGCAGGAACACACACCCTGGCCCTGGCAGCGAAACACCACTCCACGCCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
CDS CCA 90 bp TCTCTGCGGATCAAATCCATAAGGTCCCCCGCGTTGTTCCAGTGGTaGTCCGTGATAAGCCGGCGCAGCAGCCCCAGGGTCTCCCGAGCC +
Preference number: 5 (lower is better)
Translates to: SLRIKSIRSPALFQW*SVISRRSSPRVSRA
Trigger: GGCTCGGGAGACCCTGGGGCTGCTGCGCCGGCTTATCACGGACCACCACTGGAACAACGCGGGGGACCTTATGGATTTGATCCGCAGAGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000004910.12
ENSMUST00000136495.3
ENSMUST00000140900.8
CDS CCA 90 bp GGGGACAGCTTAAACATGGGGGCGCAGACGATGAGAGGCGTGGAGTaGTGTTTCGCTGCCAGGGCCAGGGTGTGTGTTCCTGCCACTGCC +
Preference number: 5 (lower is better)
Translates to: GDSLNMGAQTMRGVE*CFAARARVCVPATA
Trigger: GGCAGTGGCAGGAACACACACCCTGGCCCTGGCAGCGAAACACCACTCCACGCCTCTCATCGTCTGCGCCCCCATGTTTAAGCTGTCCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
CDS GCA 90 bp GGAGTGGTGTTTCGCTGCCAGGGCCAGGGTGTGTGTTCCTGCCACTaGCCTCAGGGAACCGTTGGCCAGGATAGTCTTCGTGCCAATGAT +
Preference number: 5 (lower is better)
Translates to: GVVFRCQGQGVCSCH*PQGTVGQDSLRAND
Trigger: ATCATTGGCACGAAGACTATCCTGGCCAACGGTTCCCTGAGGGCAGTGGCAGGAACACACACCCTGGCCCTGGCAGCGAAACACCACTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
CDS-3UTR CAA 90 bp TCAGCTAAGCCTGGAAGGCAGGAGCAGTCCTGGACGCACTCATCACTGGAGATGATAAGGTCCCCCGCGTaGTTCCAGTGGTGGTCCGTG +
Preference number: 5 (lower is better)
Translates to: SAKPGRQEQSWTHSSLEMIRSPA*FQWWSV
Trigger: CACGGACCACCACTGGAACAACGCGGGGGACCTTAT...CATCTCCAGTGATGAGTGCGTCCAGGACTGCTCCTGCCTTCCAGGCTTAGCTGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
CDS CCA 90 bp CCAATGGTCATGATCACCTCGTTGGAGTGGATGTGCTCCAGAGCCTaGGCGGCAATGTTCTCCATTGTGCCTTCCAGTTCCACCAGCAGC +
Preference number: 5 (lower is better)
Translates to: PMVMITSLEWMCSRA*AAMFSIVPSSSTSS
Trigger: GCTGCTGGTGGAACTGGAAGGCACAATGGAGAACATTGCCGCCCAGGCTCTGGAGCACATCCACTCCAACGAGGTGATCATGACCATTGG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004910.12
ENSMUST00000136495.3
ENSMUST00000140900.8
CDS-3UTR CAA 90 bp TCAGCTAAGCCTGGAAGGCAGGAGCAGTCCTGGACGCACTCATCACTGGAGATGTCCTCCCGGATGATCTaGAGGACTCTCCGCACCATA +
Preference number: 5 (lower is better)
Translates to: SAKPGRQEQSWTHSSLEMSSRMI*RTLRTI
Trigger: TATGGTGCGGAGAGTCCTCAAGATCATCCGGGAGGA...CATCTCCAGTGATGAGTGCGTCCAGGACTGCTCCTGCCTTCCAGGCTTAGCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
CDS-3UTR CAA 90 bp AAGCAAACACAGCCTGAGTGGCTCCAAAATCCCCAGGTAAGCGAGCCCTGCTGCATCGCCTCAATGATGTaGGCCTTAAGTGGGGCAAAA +
Preference number: 5 (lower is better)
Translates to: KQTQPEWLQNPQVSEPCCIASMM*ALSGAK
Trigger: TTTTGCCCCACTTAAGGCCAACATCATTGAGGCGAT...GCAGCAGGGCTCGCTTACCTGGGGATTTTGGAGCCACTCAGGCTGTGTTTGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
CDS GCA 90 bp CAAATTGACGGCCATTTCATGTCCCTGGCAGAAAGGAGCGCACTCTaGAACAATAACGTGGAACTTCCTCTTCCGGGCCGCCTCTTTAAG +
Preference number: 5 (lower is better)
Translates to: QIDGHFMSLAERSAL*NNNVELPLPGRLFK
Trigger: CTTAAAGAGGCGGCCCGGAAGAGGAAGTTCCACGTTATTGTTGCAGAGTGCGCTCCTTTCTGCCAGGGACATGAAATGGCCGTCAATTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004910.12
ENSMUST00000136495.3
ENSMUST00000140900.8
CDS GCA 90 bp ATCAGGATGATAGAGCTCGCTCATCAGGCGGTAGATGTAGGATGGTaGGTTCCCGCCAATGTTGGAGATAAAGAGGGTAATGAGGTCGGG +
Preference number: 5 (lower is better)
Translates to: IRMIELAHQAVDVGW*VPANVGDKEGNEVG
Trigger: CCCGACCTCATTACCCTCTTTATCTCCAACATTGGCGGGAACGCACCATCCTACATCTACCGCCTGATGAGCGAGCTCTATCATCCTGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004910.12
ENSMUST00000136495.3
CDS CCA 90 bp ATTTCATGTCCCTGGCAGAAAGGAGCGCACTCTGCAACAATAACGTaGAACTTCCTCTTCCGGGCCGCCTCTTTAAGGAAGGCCTCAACT +
Preference number: 5 (lower is better)
Translates to: ISCPWQKGAHSATIT*NFLFRAASLRKAST
Trigger: AGTTGAGGCCTTCCTTAAAGAGGCGGCCCGGAAGAGGAAGTTCCACGTTATTGTTGCAGAGTGCGCTCCTTTCTGCCAGGGACATGAAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004910.12
ENSMUST00000136495.3
ENSMUST00000140900.8
CDS CCA 90 bp TTCCACCAGCAGCTCATTAATCGCCTCAATGATGTTGGCCTTAAGTaGGGCAAAATGGAAGCTGAAATCCTCGCTCAGGCCTCCGGATGT +
Preference number: 5 (lower is better)
Translates to: FHQQLINRLNDVGLK*GKMEAEILAQASGC
Trigger: ACATCCGGAGGCCTGAGCGAGGATTTCAGCTTCCATTTTGCCCCACTTAAGGCCAACATCATTGAGGCGATTAATGAGCTGCTGGTGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004910.12
ENSMUST00000136495.3
ENSMUST00000140900.8
CDS CCA 90 bp GTCATCAGGATGATAGAGCTCGCTCATCAGGCGGTAGATGTAGGATaGTGCGTTCCCGCCAATGTTGGAGATAAAGAGGGTAATGAGGTC +
Preference number: 5 (lower is better)
Translates to: VIRMIELAHQAVDVG*CVPANVGDKEGNEV
Trigger: GACCTCATTACCCTCTTTATCTCCAACATTGGCGGGAACGCACCATCCTACATCTACCGCCTGATGAGCGAGCTCTATCATCCTGATGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004910.12
ENSMUST00000136495.3
CDS CCA 90 bp AGCTCATTAATCGCCTCAATGATGTTGGCCTTAAGTGGGGCAAAATaGAAGCTGAAATCCTCGCTCAGGCCTCCGGATGTCAAGAGTTTG +
Preference number: 5 (lower is better)
Translates to: SSLIASMMLALSGAK*KLKSSLRPPDVKSL
Trigger: CAAACTCTTGACATCCGGAGGCCTGAGCGAGGATTTCAGCTTCCATTTTGCCCCACTTAAGGCCAACATCATTGAGGCGATTAATGAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004910.12
ENSMUST00000136495.3
ENSMUST00000140900.8
CDS-3UTR CAA 90 bp GCAAAAGGTCTGGAAGGCATTTCTGAGCAAACACCAACCCAGCAAAGTAGTCATCGGCAATGTTCTCCATaGTGCCTTCCAGTTCCACCA +
Preference number: 5 (lower is better)
Translates to: AKGLEGISEQTPTQQSSHRQCSP*CLPVPP
Trigger: TGGTGGAACTGGAAGGCACAATGGAGAACATTGCCG...ATGACTACTTTGCTGGGTTGGTGTTTGCTCAGAAATGCCTTCCAGACCTTTTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
CDS-3UTR CAA 90 bp TCAGAGCTCAGAACAATAAACGAACTTGAGGAGTTTCCAGTAGCTTTTATTGGCGTCATGATCACCTCGTaGGAGTGGATGTGCTCCAGA +
Preference number: 5 (lower is better)
Translates to: SELRTINELEEFPVAFIGVMITS*EWMCSR
Trigger: TCTGGAGCACATCCACTCCAACGAGGTGATCATGAC...GCCAATAAAAGCTACTGGAAACTCCTCAAGTTCGTTTATTGTTCTGAGCTCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
CDS-3UTR CAA 90 bp GTCCATTCAGAGCTCAGAACAATAAACGAACTTGAGGAGTTTCCAGTAGCTTTTGCGTTCCCGCCAATGTaGGAGATAAAGAGGGTAATG +
Preference number: 5 (lower is better)
Translates to: VHSELRTINELEEFPVAFAFPPM*EIKRVM
Trigger: CATTACCCTCTTTATCTCCAACATTGGCGGGAACGC...AAAAGCTACTGGAAACTCCTCAAGTTCGTTTATTGTTCTGAGCTCTGAATGGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
CDS-3UTR CAA 90 bp GTCCATTCAGAGCTCAGAACAATAAACGAACTTGAGGAGTTTCCAGTAGCTTTTCCTTCTTTGGACAAATaGACGGCCATTTCATGTCCC +
Preference number: 5 (lower is better)
Translates to: VHSELRTINELEEFPVAFPSLDK*TAISCP
Trigger: GGGACATGAAATGGCCGTCAATTTGTCCAAAGAAGG...AAAAGCTACTGGAAACTCCTCAAGTTCGTTTATTGTTCTGAGCTCTGAATGGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
CDS GCA 72 bp CCCAGGGTCTCCCGAGCCATGTCCTCCGAGCTGCGCTaGCCGCCACCTCGCTTCAGAGTCTCCACGAAGCCT +
Preference number: 6 (lower is better)
Translates to: PRVSRAMSSELR*PPPRFRVSTKP
Trigger: AGGCTTCGTGGAGACTCTGAAGCGAGGTGGCGGGCAGCGCAGCTCGGAGGACATGGCTCGGGAGACCCTGGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004910.12
ENSMUST00000136495.3
ENSMUST00000140900.8
CDS CCA 72 bp CGGATCAAATCCATAAGGTCCCCCGCGTTGTTCCAGTaGTGGTCCGTGATAAGCCGGCGCAGCAGCCCCAGG +
Preference number: 6 (lower is better)
Translates to: RIKSIRSPALFQ*WSVISRRSSPR
Trigger: CCTGGGGCTGCTGCGCCGGCTTATCACGGACCACCACTGGAACAACGCGGGGGACCTTATGGATTTGATCCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000004910.12
ENSMUST00000136495.3
ENSMUST00000140900.8
CDS CAA 90 bp TCGTCACTGCGCCCGTGCAGTCTGCCATACTCCTCCCGGATGATCTaGAGGACTCTCCGCACCATATTTCCCACGGTGGTCTCGGAGGGC +
Preference number: 6 (lower is better)
Translates to: SSLRPCSLPYSSRMI*RTLRTIFPTVVSEG
Trigger: GCCCTCCGAGACCACCGTGGGAAATATGGTGCGGAGAGTCCTCAAGATCATCCGGGAGGAGTATGGCAGACTGCACGGGCGCAGTGACGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004910.12
ENSMUST00000136495.3
CDS CCA 72 bp TTAAACATGGGGGCGCAGACGATGAGAGGCGTGGAGTaGTGTTTCGCTGCCAGGGCCAGGGTGTGTGTTCCT +
Preference number: 6 (lower is better)
Translates to: LNMGAQTMRGVE*CFAARARVCVP
Trigger: AGGAACACACACCCTGGCCCTGGCAGCGAAACACCACTCCACGCCTCTCATCGTCTGCGCCCCCATGTTTAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
CDS CAA 72 bp CGCCCGTGCAGTCTGCCATACTCCTCCCGGATGATCTaGAGGACTCTCCGCACCATATTTCCCACGGTGGTC +
Preference number: 6 (lower is better)
Translates to: RPCSLPYSSRMI*RTLRTIFPTVV
Trigger: GACCACCGTGGGAAATATGGTGCGGAGAGTCCTCAAGATCATCCGGGAGGAGTATGGCAGACTGCACGGGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004910.12
ENSMUST00000136495.3
CDS CAA 72 bp TCGTCACTGCGCCCGTGCAGTTCCTCCCGGATGATCTaGAGGACTCTCCGCACCATATTTCCCACGGTGGTC +
Preference number: 6 (lower is better)
Translates to: SSLRPCSSSRMI*RTLRTIFPTVV
Trigger: GACCACCGTGGGAAATATGGTGCGGAGAGTCCTCAAGATCATCCGGGAGGAACTGCACGGGCGCAGTGACGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140900.8
CDS CAA 90 bp GCCAGGGCCAGGGTGTGTGTTCCTGCCACTGCCCTCAGGGAACCGTaGGCCAGGATAGTCTTCGTGCCAATGATCACCTTGTTGACTCTC +
Preference number: 6 (lower is better)
Translates to: ARARVCVPATALREP*ARIVFVPMITLLTL
Trigger: GAGAGTCAACAAGGTGATCATTGGCACGAAGACTATCCTGGCCAACGGTTCCCTGAGGGCAGTGGCAGGAACACACACCCTGGCCCTGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004910.12
CDS GCA 72 bp GGCCATTTCATGTCCCTGGCAGAAAGGAGCGCACTCTaGAACAATAACGTGGAACTTCCTCTTCCGGGCCGC +
Preference number: 6 (lower is better)
Translates to: GHFMSLAERSAL*NNNVELPLPGR
Trigger: GCGGCCCGGAAGAGGAAGTTCCACGTTATTGTTGCAGAGTGCGCTCCTTTCTGCCAGGGACATGAAATGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004910.12
ENSMUST00000136495.3
ENSMUST00000140900.8
CDS CCA 72 bp ATGATCACCTCGTTGGAGTGGATGTGCTCCAGAGCCTaGGCGGCAATGTTCTCCATTGTGCCTTCCAGTTCC +
Preference number: 6 (lower is better)
Translates to: MITSLEWMCSRA*AAMFSIVPSSS
Trigger: GGAACTGGAAGGCACAATGGAGAACATTGCCGCCCAGGCTCTGGAGCACATCCACTCCAACGAGGTGATCAT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004910.12
ENSMUST00000136495.3
ENSMUST00000140900.8
CDS CCA 72 bp CCCTGGCAGAAAGGAGCGCACTCTGCAACAATAACGTaGAACTTCCTCTTCCGGGCCGCCTCTTTAAGGAAG +
Preference number: 6 (lower is better)
Translates to: PWQKGAHSATIT*NFLFRAASLRK
Trigger: CTTCCTTAAAGAGGCGGCCCGGAAGAGGAAGTTCCACGTTATTGTTGCAGAGTGCGCTCCTTTCTGCCAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004910.12
ENSMUST00000136495.3
ENSMUST00000140900.8
CDS CCA 72 bp ATCGCCTCAATGATGTTGGCCTTAAGTGGGGCAAAATaGAAGCTGAAATCCTCGCTCAGGCCTCCGGATGTC +
Preference number: 6 (lower is better)
Translates to: IASMMLALSGAK*KLKSSLRPPDV
Trigger: GACATCCGGAGGCCTGAGCGAGGATTTCAGCTTCCATTTTGCCCCACTTAAGGCCAACATCATTGAGGCGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004910.12
ENSMUST00000136495.3
ENSMUST00000140900.8
CDS CAA 90 bp GTGCCTTCCAGTTCCACCAGCAGCTCATTAATCGCCTCAATGATGTaGGCCTTAAGTGGGGCAAAATGGAAGCTGAAATCCTCGCTCAGG +
Preference number: 6 (lower is better)
Translates to: VPSSSTSSSLIASMM*ALSGAKWKLKSSLR
Trigger: CCTGAGCGAGGATTTCAGCTTCCATTTTGCCCCACTTAAGGCCAACATCATTGAGGCGATTAATGAGCTGCTGGTGGAACTGGAAGGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004910.12
ENSMUST00000136495.3
ENSMUST00000140900.8
CDS CAA 90 bp GCGGCATCAGTCATGACAGTTGTCTCGATACCTTCTTTGGACAAATaGACGGCCATTTCATGTCCCTGGCAGAAAGGAGCGCACTCTGCA +
Preference number: 6 (lower is better)
Translates to: AASVMTVVSIPSLDK*TAISCPWQKGAHSA
Trigger: TGCAGAGTGCGCTCCTTTCTGCCAGGGACATGAAATGGCCGTCAATTTGTCCAAAGAAGGTATCGAGACAACTGTCATGACTGATGCCGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004910.12
ENSMUST00000136495.3
ENSMUST00000140900.8
CDS CCA 72 bp ATGATAGAGCTCGCTCATCAGGCGGTAGATGTAGGATaGTGCGTTCCCGCCAATGTTGGAGATAAAGAGGGT +
Preference number: 6 (lower is better)
Translates to: MIELAHQAVDVG*CVPANVGDKEG
Trigger: ACCCTCTTTATCTCCAACATTGGCGGGAACGCACCATCCTACATCTACCGCCTGATGAGCGAGCTCTATCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004910.12
ENSMUST00000136495.3
CDS GCA 72 bp ATAGAGCTCGCTCATCAGGCGGTAGATGTAGGATGGTaGGTTCCCGCCAATGTTGGAGATAAAGAGGGTAAT +
Preference number: 6 (lower is better)
Translates to: IELAHQAVDVGW*VPANVGDKEGN
Trigger: ATTACCCTCTTTATCTCCAACATTGGCGGGAACGCACCATCCTACATCTACCGCCTGATGAGCGAGCTCTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004910.12
ENSMUST00000136495.3
CDS CCA 72 bp CAGCTCATTAATCGCCTCAATGATGTTGGCCTTAAGTaGGGCAAAATGGAAGCTGAAATCCTCGCTCAGGCC +
Preference number: 6 (lower is better)
Translates to: QLINRLNDVGLK*GKMEAEILAQA
Trigger: GGCCTGAGCGAGGATTTCAGCTTCCATTTTGCCCCACTTAAGGCCAACATCATTGAGGCGATTAATGAGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000004910.12
ENSMUST00000136495.3
ENSMUST00000140900.8
CDS CAA 72 bp GCGGCATCAGTCATGACAGTTGTCTCGATACCTTCTTaGGACAAATTGACGGCCATTTCATGTCCCTGGCAG +
Preference number: 6 (lower is better)
Translates to: AASVMTVVSIPS*DKLTAISCPWQ
Trigger: CTGCCAGGGACATGAAATGGCCGTCAATTTGTCCAAAGAAGGTATCGAGACAACTGTCATGACTGATGCCGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004910.12
ENSMUST00000136495.3
ENSMUST00000140900.8
CDS CAA 90 bp GCAAAAATGGCGGCATCAGTCATGACAGTTGTCTCGATACCTTCTTaGGACAAATTGACGGCCATTTCATGTCCCTGGCAGAAAGGAGCG +
Preference number: 6 (lower is better)
Translates to: AKMAASVMTVVSIPS*DKLTAISCPWQKGA
Trigger: CGCTCCTTTCTGCCAGGGACATGAAATGGCCGTCAATTTGTCCAAAGAAGGTATCGAGACAACTGTCATGACTGATGCCGCCATTTTTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000004910.12
ENSMUST00000136495.3
ENSMUST00000140900.8
CDS CAA 72 bp GTCATGACAGTTGTCTCGATACCTTCTTTGGACAAATaGACGGCCATTTCATGTCCCTGGCAGAAAGGAGCG +
Preference number: 6 (lower is better)
Translates to: VMTVVSIPSLDK*TAISCPWQKGA
Trigger: CGCTCCTTTCTGCCAGGGACATGAAATGGCCGTCAATTTGTCCAAAGAAGGTATCGAGACAACTGTCATGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004910.12
ENSMUST00000136495.3
ENSMUST00000140900.8
CDS CAA 72 bp AGTTCCACCAGCAGCTCATTAATCGCCTCAATGATGTaGGCCTTAAGTGGGGCAAAATGGAAGCTGAAATCC +
Preference number: 6 (lower is better)
Translates to: SSTSSSLIASMM*ALSGAKWKLKS
Trigger: GGATTTCAGCTTCCATTTTGCCCCACTTAAGGCCAACATCATTGAGGCGATTAATGAGCTGCTGGTGGAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000004910.12
ENSMUST00000136495.3
ENSMUST00000140900.8