Pregenerated sensors for EIF1B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000006941Ensembl transcript IDs: ENSMUST00000007139.6, ENSMUST00000217553.2
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | ACCTTTTCCATTGGAAACATGTTAGGACGGACTCGGGCTTCGTTCCCATCTCACGAGTGGAAGTCTGAATaGTTAAATAAACGCAAAGTC | + |
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Preference number: 2 (lower is better) Translates to: TFSIGNMLGRTRASFPSHEWKSE*LNKRKV Trigger: GACTTTGCGTTTATTTAATCATTCAGACTTCCACTC...GTGAGATGGGAACGAAGCCCGAGTCCGTCCTAACATGTTTCCAATGGAAAAGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007139.6 |
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| CDS-3UTR GCA 90 bp | TCGTTCCCATCTCACCGCGATTTCCTTATGACTCAGGAGCCTACATACCCCGTGGCGTCTTCCTGCCGTTaGGCTGCTGGATCCTTATAT | + |
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Preference number: 4 (lower is better) Translates to: SFPSHRDFLMTQEPTYPVASSCR*AAGSLY Trigger: ATATAAGGATCCAGCAGCGCAACGGCAGGAAGACGC...CACGGGGTATGTAGGCTCCTGAGTCATAAGGAAATCGCGGTGAGATGGGAACGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007139.6 |
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| CDS-3UTR CCA 90 bp | ACCTTTTCCATTGGAAACATGTTAGGACGGACTCGGGCTTCGTTCCCATCTCACACCTCCAGAAGAAACTaGCAGATGTTCTTCCTTTGG | + |
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Preference number: 4 (lower is better) Translates to: TFSIGNMLGRTRASFPSHTSRRN*QMFFLW Trigger: CCAAAGGAAGAACATCTGCCAGTTTCTTCTGGAGGT...GTGAGATGGGAACGAAGCCCGAGTCCGTCCTAACATGTTTCCAATGGAAAAGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007139.6 |
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| CDS GCA 90 bp | TGTCATAATCGTCCGCAATGCCCTGCACAGTGGTCAGCGTCTTCCTaGCGTTGCGCTGCTGGATCCTTATATGAATGTAGTCCTCAGTCC | + |
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Preference number: 5 (lower is better) Translates to: CHNRPQCPAQWSASS*RCAAGSLYECSPQS Trigger: GGACTGAGGACTACATTCATATAAGGATCCAGCAGCGCAACGGCAGGAAGACGCTGACCACTGTGCAGGGCATTGCGGACGATTATGACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000007139.6 ENSMUST00000217553.2 |
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| CDS-3UTR CAA 90 bp | TCGTTCCCATCTCACCGCGATTTCCTTATGACTCAGGAGCCTACATACCCCGTGCTTCCTTTGGTCCCCTaGAAGCTGAATAACCTCTCC | + |
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Preference number: 5 (lower is better) Translates to: SFPSHRDFLMTQEPTYPVLPLVP*KLNNLS Trigger: GGAGAGGTTATTCAGCTTCAAGGGGACCAAAGGAAG...CACGGGGTATGTAGGCTCCTGAGTCATAAGGAAATCGCGGTGAGATGGGAACGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007139.6 |
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| CDS-3UTR CAA 90 bp | TCGTTCCCATCTCACCGCGATTTCCTTATGACTCAGGAGCCTACATACCCCGTGGCAGATGTTCTTCCTTaGGTCCCCTTGAAGCTGAAT | + |
|
Preference number: 5 (lower is better) Translates to: SFPSHRDFLMTQEPTYPVADVLP*VPLKLN Trigger: ATTCAGCTTCAAGGGGACCAAAGGAAGAACATCTGC...CACGGGGTATGTAGGCTCCTGAGTCATAAGGAAATCGCGGTGAGATGGGAACGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007139.6 |
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| CDS GCA 72 bp | CGTCCGCAATGCCCTGCACAGTGGTCAGCGTCTTCCTaGCGTTGCGCTGCTGGATCCTTATATGAATGTAGT | + |
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Preference number: 6 (lower is better) Translates to: RPQCPAQWSASS*RCAAGSLYECS Trigger: ACTACATTCATATAAGGATCCAGCAGCGCAACGGCAGGAAGACGCTGACCACTGTGCAGGGCATTGCGGACG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000007139.6 ENSMUST00000217553.2 |
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| CDS CAA 90 bp | CTTGACGATGCCAACCTCCAGAAGAAACTGGCAGATGTTCTTCCTTaGGTCCCCTTGAAGCTGAATAACCTCTCCGTACTCAGGGTGTTC | + |
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Preference number: 6 (lower is better) Translates to: LDDANLQKKLADVLP*VPLKLNNLSVLRVF Trigger: GAACACCCTGAGTACGGAGAGGTTATTCAGCTTCAAGGGGACCAAAGGAAGAACATCTGCCAGTTTCTTCTGGAGGTTGGCATCGTCAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007139.6 |
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| CDS CAA 72 bp | GCCAACCTCCAGAAGAAACTGGCAGATGTTCTTCCTTaGGTCCCCTTGAAGCTGAATAACCTCTCCGTACTC | + |
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Preference number: 6 (lower is better) Translates to: ANLQKKLADVLP*VPLKLNNLSVL Trigger: GAGTACGGAGAGGTTATTCAGCTTCAAGGGGACCAAAGGAAGAACATCTGCCAGTTTCTTCTGGAGGTTGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007139.6 |
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| CDS CAA 90 bp | GCCAACCTCCAGAAGAAACTGGCAGATGTTCTTCCTTTGGTCCCCTaGAAGCTGAATAACCTCTCCGTACTCAGGGTGTTCAATCACAGT | + |
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Preference number: 6 (lower is better) Translates to: ANLQKKLADVLPLVP*KLNNLSVLRVFNHS Trigger: ACTGTGATTGAACACCCTGAGTACGGAGAGGTTATTCAGCTTCAAGGGGACCAAAGGAAGAACATCTGCCAGTTTCTTCTGGAGGTTGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007139.6 |
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