Pregenerated sensors for EIF1AX (Mus musculus)
Ensembl gene IDs: ENSMUSG00000067194Ensembl transcript IDs: ENSMUST00000087143.7
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTCCTGATCCTCCTGCCCTGCCCTTCTGCGCAGGGTCACAGGCCATaGCATTATGTCAGGCATAAGTTTGTTATCCCCTCATTTCCTCTC | + |
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Preference number: 1 (lower is better) Translates to: LLILLPCPSAQGHRP*HYVRHKFVIPSFPL Trigger: GAGAGGAAATGAGGGGATAACAAACTTATGCCTGACATAATGGCATGGCCTGTGACCCTGCGCAGAAGGGCAGGGCAGGAGGATCAGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR TCA 90 bp | GGCAGGAAAACGTCTTTGAGCTTGAGGCCAGCCTGGTGTACAGAGTaGGTTTCATTATCGCTAGGGCCACACAAAGTAACCCTGTCTCAA | + |
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Preference number: 1 (lower is better) Translates to: GRKTSLSLRPAWCTE*VSLSLGPHKVTLSQ Trigger: TTGAGACAGGGTTACTTTGTGTGGCCCTAGCGATAATGAAACTCACTCTGTACACCAGGCTGGCCTCAAGCTCAAAGACGTTTTCCTGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR GCA 90 bp | GCAAACGCTGCGAGGCTATTGGCAGCCTTGTTCTCAGATGCAGTCTaGCAAGATAAACACGGAGGAACTCCACAGAAGAAGAAATATACA | + |
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Preference number: 1 (lower is better) Translates to: ANAARLLAALFSDAV*QDKHGGTPQKKKYT Trigger: TGTATATTTCTTCTTCTGTGGAGTTCCTCCGTGTTTATCTTGGCAGACTGCATCTGAGAACAAGGCTGCCAATAGCCTCGCAGCGTTTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR TCA 90 bp | GCTAGCAAAATACAAGGTCCGCATGCTGCAGGATGGATCTTGGTTTaGAACCCAAATGATTTCAGCATGTCTAGTGAGTTCCGACTAGCT | + |
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Preference number: 1 (lower is better) Translates to: ASKIQGPHAAGWILV*NPNDFSMSSEFRLA Trigger: AGCTAGTCGGAACTCACTAGACATGCTGAAATCATTTGGGTTTCAAACCAAGATCCATCCTGCAGCATGCGGACCTTGTATTTTGCTAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR GCA 90 bp | GCCAAGATAAACACGGAGGAACTCCACAGAAGAAGAAATATACACTaGACCACTGTGTCTTTCCCAATGTTTTTATGGTACCTCGGCTTT | + |
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Preference number: 1 (lower is better) Translates to: AKINTEELHRRRNIH*TTVSFPMFLWYLGF Trigger: AAAGCCGAGGTACCATAAAAACATTGGGAAAGACACAGTGGTGCAGTGTATATTTCTTCTTCTGTGGAGTTCCTCCGTGTTTATCTTGGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR TCA 90 bp | GGAATACAGGAGACATGCATCTTCTTACAGTCCTGGATTCCCATGTaGAAAGTAGATGCCAAGTGTGTCATGCATACAAATGTCTGTTAT | + |
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Preference number: 1 (lower is better) Translates to: GIQETCIFLQSWIPM*KVDAKCVMHTNVCY Trigger: ATAACAGACATTTGTATGCATGACACACTTGGCATCTACTTTTCACATGGGAATCCAGGACTGTAAGAAGATGCATGTCTCCTGTATTCC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR CAA 90 bp | AAGGAAGACAATTGCTCAGCAAACGCTGCGAGGCTATTGGCAGCCTaGTTCTCAGATGCAGTCTGCCAAGATAAACACGGAGGAACTCCA | + |
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Preference number: 2 (lower is better) Translates to: KEDNCSANAARLLAA*FSDAVCQDKHGGTP Trigger: TGGAGTTCCTCCGTGTTTATCTTGGCAGACTGCATCTGAGAACAAGGCTGCCAATAGCCTCGCAGCGTTTGCTGAGCAATTGTCTTCCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR-3UTR TCA 90 bp | GCGACAACTTACAGCCACAATTCCATACATGGGATGAGTAAACCAATGGCTACTGGATCCCAGCAAGTCTaGGGTCCACCAGCACTACAG | + |
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Preference number: 2 (lower is better) Translates to: ATTYSHNSIHGMSKPMATGSQQV*GPPALQ Trigger: CTGTAGTGCTGGTGGACCTCAGACTTGCTGGGATCC...AGTAGCCATTGGTTTACTCATCCCATGTATGGAATTGTGGCTGTAAGTTGTCGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR-3UTR GCA 90 bp | CTAAATAAGAGCAAACCTAATTTCCCAGTAGAAAGAAAATGGGATTCCCCTGGACTGATCCTCCTGCCCTaGCCTTCTGCGCAGGGTCAC | + |
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Preference number: 2 (lower is better) Translates to: LNKSKPNFPVERKWDSPGLILLP*PSAQGH Trigger: GTGACCCTGCGCAGAAGGGCAGGGCAGGAGGATCAG...TCCAGGGGAATCCCATTTTCTTTCTACTGGGAAATTAGGTTTGCTCTTATTTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR-3UTR GCA 90 bp | TTTGCATCTGATTTCTTTACATTGTTCCACATGATGGAAAAAGAACCTATGGCACCTGCCCTGCCCTTCTaGGCAGGGTCACAGGCCATG | + |
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Preference number: 2 (lower is better) Translates to: FASDFFTLFHMMEKEPMAPALPF*AGSQAM Trigger: CATGGCCTGTGACCCTGCGCAGAAGGGCAGGGCAGG...TGCCATAGGTTCTTTTTCCATCATGTGGAACAATGTAAAGAAATCAGATGCAAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR-3UTR TCA 90 bp | GCGACAACTTACAGCCACAATTCCATACATGGGATGAGTAAACCAATGGCTACTAGATCTCCTTGTTTGTaGAACCACGTGAAAGGCGCA | + |
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Preference number: 2 (lower is better) Translates to: ATTYSHNSIHGMSKPMATRSPCL*NHVKGA Trigger: TGCGCCTTTCACGTGGTTTCACAAACAAGGAGATCT...AGTAGCCATTGGTTTACTCATCCCATGTATGGAATTGTGGCTGTAAGTTGTCGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR-3UTR CCA 90 bp | AAATGGCTAAATGCTGGCAAGTCATTTTACAGACACTTGGTGTGGTTACACCGCTTCCTAGGTGCTGCTTaGAGCTATACTATAGGAACC | + |
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Preference number: 2 (lower is better) Translates to: KWLNAGKSFYRHLVWLHRFLGAA*SYTIGT Trigger: GGTTCCTATAGTATAGCTCCAAGCAGCACCTAGGAA...GCGGTGTAACCACACCAAGTGTCTGTAAAATGACTTGCCAGCATTTAGCCATTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR-3UTR GCA 90 bp | GAAAAAGACTGCAAGCAAAAGATATGTTACATAGGGAATACAGGAGACATGCATTTGCTCAGCAAACGCTaGGAGGCTATTGGCAGCCTT | + |
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Preference number: 2 (lower is better) Translates to: EKDCKQKICYIGNTGDMHLLSKR*EAIGSL Trigger: AAGGCTGCCAATAGCCTCGCAGCGTTTGCTGAGCAA...ATGCATGTCTCCTGTATTCCCTATGTAACATATCTTTTGCTTGCAGTCTTTTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR-3UTR TCA 90 bp | AAATGGCTAAATGCTGGCAAGTCATTTTACAGACACTTGGTGTGGTTACACCGCTTAAAAACCAGTTTCTaGAAACATGCAGAACTCCTG | + |
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Preference number: 2 (lower is better) Translates to: KWLNAGKSFYRHLVWLHRLKTSF*KHAELL Trigger: CAGGAGTTCTGCATGTTTTCAGAAACTGGTTTTTAA...GCGGTGTAACCACACCAAGTGTCTGTAAAATGACTTGCCAGCATTTAGCCATTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR-3UTR CCA 90 bp | TGGAATAAACTACAGGAAAAATACAACCCTATCAAACTGCTCTGTTTATGGGTGTTTAATCCCAGCACTTaGGAGGCAGAGGCAGGAAAA | + |
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Preference number: 2 (lower is better) Translates to: WNKLQEKYNPIKLLCLWVFNPST*EAEAGK Trigger: TTTTCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAA...CACCCATAAACAGAGCAGTTTGATAGGGTTGTATTTTTCCTGTAGTTTATTCCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR-3UTR TCA 90 bp | CTAAATAAGAGCAAACCTAATTTCCCAGTAGAAAGAAAATGGGATTCCCCTGGACCTCCAGTAAGCCGATaGCTGCAAAATAAAATCATG | + |
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Preference number: 2 (lower is better) Translates to: LNKSKPNFPVERKWDSPGPPVSR*LQNKIM Trigger: CATGATTTTATTTTGCAGTCATCGGCTTACTGGAGG...TCCAGGGGAATCCCATTTTCTTTCTACTGGGAAATTAGGTTTGCTCTTATTTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR-3UTR TCA 90 bp | GAAAAAGACTGCAAGCAAAAGATATGTTACATAGGGAATACAGGAGACATGCATGCTACATCCAGCTGGTaGAACACTTTTAAGGTACAG | + |
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Preference number: 2 (lower is better) Translates to: EKDCKQKICYIGNTGDMHATSSW*NTFKVQ Trigger: CTGTACCTTAAAAGTGTTTCACCAGCTGGATGTAGC...ATGCATGTCTCCTGTATTCCCTATGTAACATATCTTTTGCTTGCAGTCTTTTTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR-3UTR CCA 90 bp | TGGAATAAACTACAGGAAAAATACAACCCTATCAAACTGCTCTGTTTATGGGTGGATTTCTGCCAGGTATaGTGGTACATACATATGCCC | + |
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Preference number: 2 (lower is better) Translates to: WNKLQEKYNPIKLLCLWVDFCQV*WYIHMP Trigger: GGGCATATGTATGTACCACCATACCTGGCAGAAATC...CACCCATAAACAGAGCAGTTTGATAGGGTTGTATTTTTCCTGTAGTTTATTCCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR-3UTR CCA 90 bp | TTGAGACTCCTACCTGCTGAATTAAATAAAGATGGTGTGGCAGCCATTGTAGTGCAAATGGCTAAATGCTaGCAAGTCATTTTACAGACA | + |
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Preference number: 2 (lower is better) Translates to: LRLLPAELNKDGVAAIVVQMAKC*QVILQT Trigger: TGTCTGTAAAATGACTTGCCAGCATTTAGCCATTTG...CACTACAATGGCTGCCACACCATCTTTATTTAATTCAGCAGGTAGGAGTCTCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR-3UTR TCA 90 bp | TGGAATAAACTACAGGAAAAATACAACCCTATCAAACTGCTCTGTTTATGGGTGGTGTGTCAGTTTTCATaGACGAAAAGCTTTCTGGCT | + |
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Preference number: 2 (lower is better) Translates to: WNKLQEKYNPIKLLCLWVVCQFS*TKSFLA Trigger: AGCCAGAAAGCTTTTCGTTCATGAAAACTGACACAC...CACCCATAAACAGAGCAGTTTGATAGGGTTGTATTTTTCCTGTAGTTTATTCCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR-3UTR TCA 90 bp | AATCGAATCAACAAAGTGGACTTAGCGTATCAGTTAACAGTTTTTCAAAGACTGGTGAAAATTTTTCTTTaGGGTCTATGGCCAGATTCC | + |
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Preference number: 2 (lower is better) Translates to: NRINKVDLAYQLTVFQRLVKIFL*GLWPDS Trigger: GGAATCTGGCCATAGACCTCAAAGAAAAATTTTCAC...CAGTCTTTGAAAAACTGTTAACTGATACGCTAAGTCCACTTTGTTGATTCGATT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR-3UTR TCA 90 bp | AATGAAAAAGACTGCAAGCAAAAGATATGTTACATAGGGAATACAGGAGACATGTTCTATTGTTGTTTTTaGGCCAGTGCCTTATGTAGC | + |
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Preference number: 2 (lower is better) Translates to: NEKDCKQKICYIGNTGDMFYCCF*ASALCS Trigger: GCTACATAAGGCACTGGCTCAAAAACAACAATAGAA...CATGTCTCCTGTATTCCCTATGTAACATATCTTTTGCTTGCAGTCTTTTTCATT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR-3UTR TCA 90 bp | AATGAAAAAGACTGCAAGCAAAAGATATGTTACATAGGGAATACAGGAGACATGATTTGTGACACTGTATaGTTCCCACACCAAATACAC | + |
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Preference number: 2 (lower is better) Translates to: NEKDCKQKICYIGNTGDMICDTV*FPHQIH Trigger: GTGTATTTGGTGTGGGAATCATACAGTGTCACAAAT...CATGTCTCCTGTATTCCCTATGTAACATATCTTTTGCTTGCAGTCTTTTTCATT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR-3UTR GCA 90 bp | TTTGCATCTGATTTCTTTACATTGTTCCACATGATGGAAAAAGAACCTATGGCAAAACCATTTTGGAAATaGCTTTCCTCCTCCAGTAAG | + |
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Preference number: 2 (lower is better) Translates to: FASDFFTLFHMMEKEPMAKPFWK*LSSSSK Trigger: CTTACTGGAGGAGGAAAGGCATTTCCAAAATGGTTT...TGCCATAGGTTCTTTTTCCATCATGTGGAACAATGTAAAGAAATCAGATGCAAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR-3UTR TCA 90 bp | TTTGCATCTGATTTCTTTACATTGTTCCACATGATGGAAAAAGAACCTATGGCACTCTGTAGTCAACACTaGCAATTTCTATTCAAGATG | + |
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Preference number: 2 (lower is better) Translates to: FASDFFTLFHMMEKEPMALCSQH*QFLFKM Trigger: CATCTTGAATAGAAATTGTCAGTGTTGACTACAGAG...TGCCATAGGTTCTTTTTCCATCATGTGGAACAATGTAAAGAAATCAGATGCAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR-3UTR GCA 90 bp | GAAAAAGACTGCAAGCAAAAGATATGTTACATAGGGAATACAGGAGACATGCATCAAAACACAGATTTCTaGCTCCATGTGTATCAAAAT | + |
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Preference number: 2 (lower is better) Translates to: EKDCKQKICYIGNTGDMHQNTDF*LHVYQN Trigger: ATTTTGATACACATGGAGGCAGAAATCTGTGTTTTG...ATGCATGTCTCCTGTATTCCCTATGTAACATATCTTTTGCTTGCAGTCTTTTTC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR TCA 72 bp | GAGCCAGTGCCTTATGTAGCCCTAGCTACTATTCAATaGCAAATCCCCCAGAGCTGGGATCCCAGGGGTACG | + |
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Preference number: 3 (lower is better) Translates to: EPVPYVALATIQ*QIPQSWDPRGT Trigger: CGTACCCCTGGGATCCCAGCTCTGGGGGATTTGTCATTGAATAGTAGCTAGGGCTACATAAGGCACTGGCTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR TCA 72 bp | ACGTCTTTGAGCTTGAGGCCAGCCTGGTGTACAGAGTaGGTTTCATTATCGCTAGGGCCACACAAAGTAACC | + |
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Preference number: 3 (lower is better) Translates to: TSLSLRPAWCTE*VSLSLGPHKVT Trigger: GGTTACTTTGTGTGGCCCTAGCGATAATGAAACTCACTCTGTACACCAGGCTGGCCTCAAGCTCAAAGACGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR CCA 72 bp | AGGAAGACAATTGCTCAGCAAACGCTGCGAGGCTATTaGCAGCCTTGTTCTCAGATGCAGTCTGCCAAGATA | + |
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Preference number: 3 (lower is better) Translates to: RKTIAQQTLRGY*QPCSQMQSAKI Trigger: TATCTTGGCAGACTGCATCTGAGAACAAGGCTGCCAATAGCCTCGCAGCGTTTGCTGAGCAATTGTCTTCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR-3UTR CAA 90 bp | GCGACAACTTACAGCCACAATTCCATACATGGGATGAGTAAACCAATGGCTACTAGGCTATTGGCAGCCTaGTTCTCAGATGCAGTCTGC | + |
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Preference number: 3 (lower is better) Translates to: ATTYSHNSIHGMSKPMATRLLAA*FSDAVC Trigger: GCAGACTGCATCTGAGAACAAGGCTGCCAATAGCCT...AGTAGCCATTGGTTTACTCATCCCATGTATGGAATTGTGGCTGTAAGTTGTCGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR CCA 72 bp | GAGGATCAGAATTTGAGGCTGGCCTTAGTTAGCTATTaGTATTTTAAGGCCAGCCTGGCGGTACATGAGATC | + |
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Preference number: 3 (lower is better) Translates to: EDQNLRLALVSY*YFKASLAVHEI Trigger: GATCTCATGTACCGCCAGGCTGGCCTTAAAATACCAATAGCTAACTAAGGCCAGCCTCAAATTCTGATCCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR-3UTR CAA 90 bp | TTGAGACTCCTACCTGCTGAATTAAATAAAGATGGTGTGGCAGCCATTGTAGTGAAAACGTCTTTGAGCTaGAGGCCAGCCTGGTGTACA | + |
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Preference number: 3 (lower is better) Translates to: LRLLPAELNKDGVAAIVVKTSLS*RPAWCT Trigger: TGTACACCAGGCTGGCCTCAAGCTCAAAGACGTTTT...CACTACAATGGCTGCCACACCATCTTTATTTAATTCAGCAGGTAGGAGTCTCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR GCA 72 bp | TTAAGGTACAGAGGTCTAATTACTAAGGAAGACAATTaGTCAGCAAACGCTGCGAGGCTATTGGCAGCCTTG | + |
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Preference number: 3 (lower is better) Translates to: LRYRGLITKEDN*SANAARLLAAL Trigger: CAAGGCTGCCAATAGCCTCGCAGCGTTTGCTGAGCAATTGTCTTCCTTAGTAATTAGACCTCTGTACCTTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR-3UTR CAA 90 bp | TTTGCATCTGATTTCTTTACATTGTTCCACATGATGGAAAAAGAACCTATGGCAGGCAGGAAAACGTCTTaGAGCTTGAGGCCAGCCTGG | + |
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Preference number: 3 (lower is better) Translates to: FASDFFTLFHMMEKEPMAGRKTS*SLRPAW Trigger: CCAGGCTGGCCTCAAGCTCAAAGACGTTTTCCTGCC...TGCCATAGGTTCTTTTTCCATCATGTGGAACAATGTAAAGAAATCAGATGCAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR-3UTR CAA 90 bp | CTTTTAAGGTACAGAGGTCTAATTACTAAGGAAGACAATTGCTCAGCAAACGCTATGGTACCTCGGCTTTaGAGGCAGAGTGTGCAAACC | + |
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Preference number: 3 (lower is better) Translates to: LLRYRGLITKEDNCSANAMVPRL*RQSVQT Trigger: GGTTTGCACACTCTGCCTCAAAAGCCGAGGTACCAT...AGCGTTTGCTGAGCAATTGTCTTCCTTAGTAATTAGACCTCTGTACCTTAAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR TCA 72 bp | ATACAAGGTCCGCATGCTGCAGGATGGATCTTGGTTTaGAACCCAAATGATTTCAGCATGTCTAGTGAGTTC | + |
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Preference number: 3 (lower is better) Translates to: IQGPHAAGWILV*NPNDFSMSSEF Trigger: GAACTCACTAGACATGCTGAAATCATTTGGGTTTCAAACCAAGATCCATCCTGCAGCATGCGGACCTTGTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR CCA 72 bp | GCAAAATACAAGGTCCGCATGCTGCAGGATGGATCTTaGTTTGAAACCCAAATGATTTCAGCATGTCTAGTG | + |
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Preference number: 3 (lower is better) Translates to: AKYKVRMLQDGS*FETQMISACLV Trigger: CACTAGACATGCTGAAATCATTTGGGTTTCAAACCAAGATCCATCCTGCAGCATGCGGACCTTGTATTTTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR CCA 72 bp | CTAAATGCTGGCAAGTCATTTTACAGACACTTGGTGTaGTTACACCGCCACTTTAGCAACACACATTGTTCA | + |
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Preference number: 3 (lower is better) Translates to: LNAGKSFYRHLV*LHRHFSNTHCS Trigger: TGAACAATGTGTGTTGCTAAAGTGGCGGTGTAACCACACCAAGTGTCTGTAAAATGACTTGCCAGCATTTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR TCA 72 bp | GAGACATGCATCTTCTTACAGTCCTGGATTCCCATGTaGAAAGTAGATGCCAAGTGTGTCATGCATACAAAT | + |
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Preference number: 3 (lower is better) Translates to: ETCIFLQSWIPM*KVDAKCVMHTN Trigger: ATTTGTATGCATGACACACTTGGCATCTACTTTTCACATGGGAATCCAGGACTGTAAGAAGATGCATGTCTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR GCA 72 bp | AACACGGAGGAACTCCACAGAAGAAGAAATATACACTaGACCACTGTGTCTTTCCCAATGTTTTTATGGTAC | + |
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Preference number: 3 (lower is better) Translates to: NTEELHRRRNIH*TTVSFPMFLWY Trigger: GTACCATAAAAACATTGGGAAAGACACAGTGGTGCAGTGTATATTTCTTCTTCTGTGGAGTTCCTCCGTGTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR CCA 72 bp | CCACTGAATATCCCTTTTAGTAATTTGAGATCACTCTaGACAACTGGCTTCCAGCTAGAAAATGTCCTCTTC | + |
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Preference number: 3 (lower is better) Translates to: PLNIPFSNLRSL*TTGFQLENVLF Trigger: GAAGAGGACATTTTCTAGCTGGAAGCCAGTTGTCCAGAGTGATCTCAAATTACTAAAAGGGATATTCAGTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR TCA 72 bp | GTGTGCATCCAATCAGTTCAAACAATCAAAGCCAGGTaGGAACAGGAAATGGACAAAGTGTACTTTTTCTTC | + |
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Preference number: 3 (lower is better) Translates to: VCIQSVQTIKAR*EQEMDKVYFFF Trigger: GAAGAAAAAGTACACTTTGTCCATTTCCTGTTCTCACCTGGCTTTGATTGTTTGAACTGATTGGATGCACAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR GCA 72 bp | GGAATAAACTACAGGAAAAATACAACCCTATCAAACTaGTCTGTTTATGGGTGTTGGGGAATCACACCAAGA | + |
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Preference number: 3 (lower is better) Translates to: GINYRKNTTLSN*SVYGCWGITPR Trigger: TCTTGGTGTGATTCCCCAACACCCATAAACAGAGCAGTTTGATAGGGTTGTATTTTTCCTGTAGTTTATTCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR GCA 72 bp | TGGTTACACCGCCACTTTAGCAACACACATTGTTCATaGTCAACTGGAATAAACTACAGGAAAAATACAACC | + |
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Preference number: 3 (lower is better) Translates to: WLHRHFSNTHCS*STGINYRKNTT Trigger: GGTTGTATTTTTCCTGTAGTTTATTCCAGTTGAGCATGAACAATGTGTGTTGCTAAAGTGGCGGTGTAACCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR GCA 72 bp | CTTCTTACAGTCCTGGATTCCCATGTGAAAAGTAGATaGCAAGTGTGTCATGCATACAAATGTCTGTTATTA | + |
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Preference number: 3 (lower is better) Translates to: LLTVLDSHVKSR*QVCHAYKCLLL Trigger: TAATAACAGACATTTGTATGCATGACACACTTGGCATCTACTTTTCACATGGGAATCCAGGACTGTAAGAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR-3UTR CAA 90 bp | GAAAAAGACTGCAAGCAAAAGATATGTTACATAGGGAATACAGGAGACATGCATCAAAAATGGTTTCTATaGTTGTTTTTGAGCCAGTGC | + |
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Preference number: 3 (lower is better) Translates to: EKDCKQKICYIGNTGDMHQKWFL*LFLSQC Trigger: GCACTGGCTCAAAAACAACAATAGAAACCATTTTTG...ATGCATGTCTCCTGTATTCCCTATGTAACATATCTTTTGCTTGCAGTCTTTTTC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR TCA 72 bp | GTGCAAAAGTCCAAGGGAGTCCTATCAGTATATAAATaGAACTTATCTTTACTGAGCAGGATGAATATCATA | + |
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Preference number: 3 (lower is better) Translates to: VQKSKGVLSVYK*NLSLLSRMNII Trigger: TATGATATTCATCCTGCTCAGTAAAGATAAGTTTCATTTATATACTGATAGGACTCCCTTGGACTTTTGCAC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR CAA 72 bp | AAGGAAGACAATTGCTCAGCAAACGCTGCGAGGCTATaGGCAGCCTTGTTCTCAGATGCAGTCTGCCAAGAT | + |
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Preference number: 4 (lower is better) Translates to: KEDNCSANAARL*AALFSDAVCQD Trigger: ATCTTGGCAGACTGCATCTGAGAACAAGGCTGCCAATAGCCTCGCAGCGTTTGCTGAGCAATTGTCTTCCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR CAA 72 bp | TGTGTCTTTCCCAATGTTTTTATGGTACCTCGGCTTTaGAGGCAGAGTGTGCAAACCGAGGAGATGAAGTCA | + |
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Preference number: 4 (lower is better) Translates to: CVFPNVFMVPRL*RQSVQTEEMKS Trigger: TGACTTCATCTCCTCGGTTTGCACACTCTGCCTCAAAAGCCGAGGTACCATAAAAACATTGGGAAAGACACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| CDS-3UTR TCA 90 bp | CTTTTAAGGTACAGAGGTCTAATTACTAAGGAAGACAATTGCTCAGCAAACGCTCTTGCCCATCCTCCTTaGACACAAGCTCTCGCTTTT | + |
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Preference number: 4 (lower is better) Translates to: LLRYRGLITKEDNCSANALAHPP*TQALAF Trigger: AAAAGCGAGAGCTTGTGTTCAAGGAGGATGGGCAAG...AGCGTTTGCTGAGCAATTGTCTTCCTTAGTAATTAGACCTCTGTACCTTAAAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| CDS-3UTR GCA 90 bp | GCGACAACTTACAGCCACAATTCCATACATGGGATGAGTAAACCAATGGCTACTCTCTACGCCGGTTTTTaGCTCCTTTTCCTTTATTCT | + |
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Preference number: 4 (lower is better) Translates to: ATTYSHNSIHGMSKPMATLYAGF*LLFLYS Trigger: AGAATAAAGGAAAAGGAGGCAAAAACCGGCGTAGAG...AGTAGCCATTGGTTTACTCATCCCATGTATGGAATTGTGGCTGTAAGTTGTCGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR CAA 72 bp | AAATGGCTAAATGCTGGCAAGTCATTTTACAGACACTaGGTGTGGTTACACCGCCACTTTAGCAACACACAT | + |
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Preference number: 4 (lower is better) Translates to: KWLNAGKSFYRH*VWLHRHFSNTH Trigger: ATGTGTGTTGCTAAAGTGGCGGTGTAACCACACCAAGTGTCTGTAAAATGACTTGCCAGCATTTAGCCATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| CDS-3UTR TCA 90 bp | TGGAATAAACTACAGGAAAAATACAACCCTATCAAACTGCTCTGTTTATGGGTGTTCTCAATTTCCCTCTaGTGTGGCACAGTCTCTTTA | + |
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Preference number: 4 (lower is better) Translates to: WNKLQEKYNPIKLLCLWVFSISL*CGTVSL Trigger: TAAAGAGACTGTGCCACATCAGAGGGAAATTGAGAA...CACCCATAAACAGAGCAGTTTGATAGGGTTGTATTTTTCCTGTAGTTTATTCCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| 3UTR CAA 72 bp | AGCATAAAACATCCACTGAATATCCCTTTTAGTAATTaGAGATCACTCTGGACAACTGGCTTCCAGCTAGAA | + |
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Preference number: 4 (lower is better) Translates to: SIKHPLNIPFSN*RSLWTTGFQLE Trigger: TTCTAGCTGGAAGCCAGTTGTCCAGAGTGATCTCAAATTACTAAAAGGGATATTCAGTGGATGTTTTATGCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| CDS-3UTR CCA 90 bp | AATGAAAAAGACTGCAAGCAAAAGATATGTTACATAGGGAATACAGGAGACATGCACCATCAAAACACATaGCTTCTAATCGTCCGTTTC | + |
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Preference number: 4 (lower is better) Translates to: NEKDCKQKICYIGNTGDMHHQNT*LLIVRF Trigger: GAAACGGACGATTAGAAGCCATGTGTTTTGATGGTG...CATGTCTCCTGTATTCCCTATGTAACATATCTTTTGCTTGCAGTCTTTTTCATT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| CDS-3UTR TCA 90 bp | GAAAAAGACTGCAAGCAAAAGATATGTTACATAGGGAATACAGGAGACATGCATAACATTTTGATTACTTaGGCATATTCTTGCCCATCC | + |
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Preference number: 4 (lower is better) Translates to: EKDCKQKICYIGNTGDMHNILIT*AYSCPS Trigger: GGATGGGCAAGAATATGCTCAAGTAATCAAAATGTT...ATGCATGTCTCCTGTATTCCCTATGTAACATATCTTTTGCTTGCAGTCTTTTTC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| CDS-3UTR CAA 90 bp | AATCGAATCAACAAAGTGGACTTAGCGTATCAGTTAACAGTTTTTCAAAGACTGCCTCTACGCCGGTTTTaGCCTCCTTTTCCTTTATTC | + |
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Preference number: 5 (lower is better) Translates to: NRINKVDLAYQLTVFQRLPLRRF*PPFPLF Trigger: GAATAAAGGAAAAGGAGGCAAAAACCGGCGTAGAGG...CAGTCTTTGAAAAACTGTTAACTGATACGCTAAGTCCACTTTGTTGATTCGATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| CDS-3UTR CAA 90 bp | CTTTTAAGGTACAGAGGTCTAATTACTAAGGAAGACAATTGCTCAGCAAACGCTGATTCATTCTCATTTTaGCCTCTACGCCGGTTTTTG | + |
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Preference number: 5 (lower is better) Translates to: LLRYRGLITKEDNCSANADSFSF*PLRRFL Trigger: CAAAAACCGGCGTAGAGGCAAAAATGAGAATGAATC...AGCGTTTGCTGAGCAATTGTCTTCCTTAGTAATTAGACCTCTGTACCTTAAAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| CDS-3UTR CAA 90 bp | GAAAAAGACTGCAAGCAAAAGATATGTTACATAGGGAATACAGGAGACATGCATTACTTGAGCATATTCTaGCCCATCCTCCTTGAACAC | + |
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Preference number: 5 (lower is better) Translates to: EKDCKQKICYIGNTGDMHYLSIF*PILLEH Trigger: GTGTTCAAGGAGGATGGGCAAGAATATGCTCAAGTA...ATGCATGTCTCCTGTATTCCCTATGTAACATATCTTTTGCTTGCAGTCTTTTTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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| CDS TCA 72 bp | TCGATGTCTTCATCATCATCCCCAATGTCATCAAACTaGATTTCATCATCATCTCCAGGACCAAATGTATCA | + |
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Preference number: 6 (lower is better) Translates to: SMSSSSSPMSSN*ISSSSPGPNVS Trigger: TGATACATTTGGTCCTGGAGATGATGATGAAATTCAGTTTGATGACATTGGGGATGATGATGAAGACATCGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087143.7 |
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