Pregenerated sensors for EIF1AD8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079034Ensembl transcript IDs: ENSMUST00000110152.3
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCAAGCGAGTGCATACAACCAGGGCCAGAAATGAAAGGTCACAAATaGAATGGCAGTCCCTTAACAGTGCACACTGCTGTGCCCAAAGTT | + |
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Preference number: 1 (lower is better) Translates to: SSECIQPGPEMKGHK*NGSPLTVHTAVPKV Trigger: AACTTTGGGCACAGCAGTGTGCACTGTTAAGGGACTGCCATTCCATTTGTGACCTTTCATTTCTGGCCCTGGTTGTATGCACTCGCTTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110152.3 |
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| 3UTR CCA 90 bp | CGAGTGCATACAACCAGGGCCAGAAATGAAAGGTCACAAATGGAATaGCAGTCCCTTAACAGTGCACACTGCTGTGCCCAAAGTTCAATT | + |
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Preference number: 1 (lower is better) Translates to: RVHTTRARNERSQME*QSLNSAHCCAQSSI Trigger: AATTGAACTTTGGGCACAGCAGTGTGCACTGTTAAGGGACTGCCATTCCATTTGTGACCTTTCATTTCTGGCCCTGGTTGTATGCACTCG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110152.3 |
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| 3UTR-3UTR TCA 90 bp | ACCAGGGCCAGAAATGAAAGGTCACAAATGGAATGGCAGTCCCTTAACAGTGCAGTCATCAGTTTGCATTaGCAAAACACACTCATGCCA | + |
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Preference number: 2 (lower is better) Translates to: TRARNERSQMEWQSLNSAVISLH*QNTLMP Trigger: TGGCATGAGTGTGTTTTGTCAATGCAAACTGATGAC...TGCACTGTTAAGGGACTGCCATTCCATTTGTGACCTTTCATTTCTGGCCCTGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110152.3 |
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| 3UTR-3UTR TCA 90 bp | GTGCATACAACCAGGGCCAGAAATGAAAGGTCACAAATGGAATGGCAGTCCCTTGTTTTACTTAACAGCTaGACGTCAAGATGCCAATTG | + |
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Preference number: 2 (lower is better) Translates to: VHTTRARNERSQMEWQSLVLLNS*TSRCQL Trigger: CAATTGGCATCTTGACGTTCAGCTGTTAAGTAAAAC...AAGGGACTGCCATTCCATTTGTGACCTTTCATTTCTGGCCCTGGTTGTATGCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110152.3 |
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| 3UTR CCA 72 bp | ACAACCAGGGCCAGAAATGAAAGGTCACAAATGGAATaGCAGTCCCTTAACAGTGCACACTGCTGTGCCCAA | + |
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Preference number: 3 (lower is better) Translates to: TTRARNERSQME*QSLNSAHCCAQ Trigger: TTGGGCACAGCAGTGTGCACTGTTAAGGGACTGCCATTCCATTTGTGACCTTTCATTTCTGGCCCTGGTTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110152.3 |
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| 3UTR-3UTR CAA 90 bp | CTTAAAGGATCAAGCGAGTGCATACAACCAGGGCCAGAAATGAAAGGTCACAAACTATCTTCAGACAACTaGGAAGGTAGGATGCTTAGG | + |
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Preference number: 3 (lower is better) Translates to: LKGSSECIQPGPEMKGHKLSSDN*EGRMLR Trigger: CCTAAGCATCCTACCTTCCAAGTTGTCTGAAGATAG...TTTGTGACCTTTCATTTCTGGCCCTGGTTGTATGCACTCGCTTGATCCTTTAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110152.3 |
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| 3UTR-3UTR CAA 90 bp | CTTAACAGTGCACACTGCTGTGCCCAAAGTTCAATTATACCCATAAGCACAAAGAGTCATCAGTTTGCATaGACAAAACACACTCATGCC | + |
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Preference number: 3 (lower is better) Translates to: LNSAHCCAQSSIIPISTKSHQFA*TKHTHA Trigger: GGCATGAGTGTGTTTTGTCAATGCAAACTGATGACT...CTTTGTGCTTATGGGTATAATTGAACTTTGGGCACAGCAGTGTGCACTGTTAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110152.3 |
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| CDS-3UTR GCA 90 bp | CTTAAAGGATCAAGCGAGTGCATACAACCAGGGCCAGAAATGAAAGGTCACAAAACCATCAAAACACATTaGTTCCAACCGTCCACATCC | + |
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Preference number: 4 (lower is better) Translates to: LKGSSECIQPGPEMKGHKTIKTH*FQPSTS Trigger: GGATGTGGACGGTTGGAAGCAATGTGTTTTGATGGT...TTTGTGACCTTTCATTTCTGGCCCTGGTTGTATGCACTCGCTTGATCCTTTAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110152.3 |
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| CDS-3UTR CAA 90 bp | ACCAGGGCCAGAAATGAAAGGTCACAAATGGAATGGCAGTCCCTTAACAGTGCACCACATCCCAGCATTTaGGTCACCTGGGCATACTCT | + |
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Preference number: 5 (lower is better) Translates to: TRARNERSQMEWQSLNSAPHPSI*VTWAYS Trigger: AGAGTATGCCCAGGTGACCAAAATGCTGGGATGTGG...TGCACTGTTAAGGGACTGCCATTCCATTTGTGACCTTTCATTTCTGGCCCTGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110152.3 |
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| CDS-3UTR CAA 90 bp | CTTAAAGGATCAAGCGAGTGCATACAACCAGGGCCAGAAATGAAAGGTCACAAACACCTGGGCATACTCTaGCCCATATTCTTTAAACAC | + |
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Preference number: 5 (lower is better) Translates to: LKGSSECIQPGPEMKGHKHLGIL*PIFFKH Trigger: GTGTTTAAAGAATATGGGCAAGAGTATGCCCAGGTG...TTTGTGACCTTTCATTTCTGGCCCTGGTTGTATGCACTCGCTTGATCCTTTAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110152.3 |
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| CDS GCA 90 bp | TCCAACCGTCCACATCCCAGCATTTTGGTCACCTGGGCATACTCTTaGCCATATTCTTTAAACACCAACTCTCTTTTCTCTGATTCATTT | + |
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Preference number: 5 (lower is better) Translates to: SNRPHPSILVTWAYS*PYSLNTNSLFSDSF Trigger: AAATGAATCAGAGAAAAGAGAGTTGGTGTTTAAAGAATATGGGCAAGAGTATGCCCAGGTGACCAAAATGCTGGGATGTGGACGGTTGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110152.3 |
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| CDS CCA 72 bp | GCTTCCAACCGTCCACATCCCAGCATTTTGGTCACCTaGGCATACTCTTGCCCATATTCTTTAAACACCAAC | + |
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Preference number: 6 (lower is better) Translates to: ASNRPHPSILVT*AYSCPYSLNTN Trigger: GTTGGTGTTTAAAGAATATGGGCAAGAGTATGCCCAGGTGACCAAAATGCTGGGATGTGGACGGTTGGAAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110152.3 |
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