Pregenerated sensors for EIF1AD15 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000093847Ensembl transcript IDs: ENSMUST00000177747.2, ENSMUST00000218054.3
Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TTAAAACTGCACTGTAAGAGGCAACAACTTATGGGTGGAAACAACTTAAAGGATAACAAGGGACAGAAATaGAAGGTCACAAATGGAATG | + |
|
Preference number: 2 (lower is better) Translates to: LKLHCKRQQLMGGNNLKDNKGQK*KVTNGM Trigger: CATTCCATTTGTGACCTTTCATTTCTGTCCCTTGTT...ATCCTTTAAGTTGTTTCCACCCATAAGTTGTTGCCTCTTACAGTGCAGTTTTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218054.3 |
||
| 3UTR-3UTR TCA 90 bp | TTAAAACTGCACTGTAAGAGGCAACAACTTATGGGTGGAAACAACTTAAAGGATAGATGTCAATTGTGTTaGGCAATCTTCAGAGAACTT | + |
|
Preference number: 2 (lower is better) Translates to: LKLHCKRQQLMGGNNLKDRCQLC*AIFREL Trigger: AAGTTCTCTGAAGATTGCTCAACACAATTGACATCT...ATCCTTTAAGTTGTTTCCACCCATAAGTTGTTGCCTCTTACAGTGCAGTTTTAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218054.3 |
||
| 3UTR CCA 72 bp | ACAACAAGGGACAGAAATGAAAGGTCACAAATGGAATaGCAGTCCCTTAACAGTGCACACTGCTCTGCCCTA | + |
|
Preference number: 3 (lower is better) Translates to: TTRDRNERSQME*QSLNSAHCSAL Trigger: TAGGGCAGAGCAGTGTGCACTGTTAAGGGACTGCCATTCCATTTGTGACCTTTCATTTCTGTCCCTTGTTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218054.3 |
||
| 3UTR CCA 72 bp | GGTATACAACAAGGGACAGAAATGAAAGGTCACAAATaGAATGGCAGTCCCTTAACAGTGCACACTGCTCTG | + |
|
Preference number: 3 (lower is better) Translates to: GIQQGTEMKGHK*NGSPLTVHTAL Trigger: CAGAGCAGTGTGCACTGTTAAGGGACTGCCATTCCATTTGTGACCTTTCATTTCTGTCCCTTGTTGTATACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218054.3 |
||
| CDS TCA 72 bp | GCTTCCAACCGTCCACATCCCAGCATTTTGGTCACCTaGGCATACTCTTGCCCATATTCTTTAAACACTAAC | + |
|
Preference number: 6 (lower is better) Translates to: ASNRPHPSILVT*AYSCPYSLNTN Trigger: GTTAGTGTTTAAAGAATATGGGCAAGAGTATGCTCAGGTGACCAAAATGCTGGGATGTGGACGGTTGGAAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000177747.2 ENSMUST00000218054.3 |
||
| CDS TCA 72 bp | CATCATCATCCGCAGCACCAAATGTGTCCGTTTCATTaGTTTTGGCATGTTCTGGAAGTTCTCCATAGGCCT | + |
|
Preference number: 6 (lower is better) Translates to: HHHPQHQMCPFH*FWHVLEVLHRP Trigger: AGGCCTATGGAGAACTTCCAGAACATGCCAAAATCAATGAAACGGACACATTTGGTGCTGCGGATGATGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000177747.2 ENSMUST00000218054.3 |
||