Pregenerated sensors for EIF1AD (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024841Ensembl transcript IDs: ENSMUST00000025759.9
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGGTTAGGAGCCCCACAGGTTCATGCCTGTGGGCAGGACAGCCATTaGGTTGGTCAGCCTAGGCTATACAGTGATTCCCAAGCAAACCTA | + |
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Preference number: 1 (lower is better) Translates to: RLGAPQVHACGQDSH*VGQPRLYSDSQANL Trigger: TAGGTTTGCTTGGGAATCACTGTATAGCCTAGGCTGACCAACTCAATGGCTGTCCTGCCCACAGGCATGAACCTGTGGGGCTCCTAACCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| 3UTR GCA 90 bp | GGGTGCATGGGTGTTGTTTGTATGGCAGCAGGTAGTATGCACTGTTaGAATAAGGGACAACAAGGCACCAAGAGGTTTGTCCTCAGCTGT | + |
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Preference number: 1 (lower is better) Translates to: GCMGVVCMAAGSMHC*NKGQQGTKRFVLSC Trigger: ACAGCTGAGGACAAACCTCTTGGTGCCTTGTTGTCCCTTATTGCAACAGTGCATACTACCTGCTGCCATACAAACAACACCCATGCACCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| 3UTR GCA 90 bp | GAGAGACAGGGTGCATGGGTGTTGTTTGTATGGCAGCAGGTAGTATaGACTGTTGCAATAAGGGACAACAAGGCACCAAGAGGTTTGTCC | + |
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Preference number: 1 (lower is better) Translates to: ERQGAWVLFVWQQVV*TVAIRDNKAPRGLS Trigger: GGACAAACCTCTTGGTGCCTTGTTGTCCCTTATTGCAACAGTGCATACTACCTGCTGCCATACAAACAACACCCATGCACCCTGTCTCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| 3UTR GCA 90 bp | GAGCGAGGCATAAAGTGTACAGAGAGGTACTGTGAACCAGACACATaGAGCAGAGTTAGGCCAAACCATTTCCTTTCCATTCTCCTCATA | + |
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Preference number: 1 (lower is better) Translates to: ERGIKCTERYCEPDT*SRVRPNHFLSILLI Trigger: TATGAGGAGAATGGAAAGGAAATGGTTTGGCCTAACTCTGCTGCATGTGTCTGGTTCACAGTACCTCTCTGTACACTTTATGCCTCGCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| 3UTR-3UTR TCA 90 bp | TTCCACTGTGGGATGGAGCAAATGACCAGCAGGGGCAATACTGAGCTGAGAGGTCCAAGGGGTAGTCCCTaGGCAAATAGAGAAGTGGGT | + |
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Preference number: 2 (lower is better) Translates to: FHCGMEQMTSRGNTELRGPRGSP*ANREVG Trigger: ACCCACTTCTCTATTTGCTCAGGGACTACCCCTTGG...ACCTCTCAGCTCAGTATTGCCCCTGCTGGTCATTTGCTCCATCCCACAGTGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| 3UTR-3UTR TCA 90 bp | AAGGTTAGGAGCCCCACAGGTTCATGCCTGTGGGCAGGACAGCCATTGAGTTGGAAACGAAAGCAGGTATaGAGAAGACCCAGTAAGGCA | + |
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Preference number: 2 (lower is better) Translates to: KVRSPTGSCLWAGQPLSWKRKQV*RRPSKA Trigger: TGCCTTACTGGGTCTTCTTCATACCTGCTTTCGTTT...CCAACTCAATGGCTGTCCTGCCCACAGGCATGAACCTGTGGGGCTCCTAACCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| 3UTR-3UTR CCA 90 bp | AGAGGTCTGAGTTGCCACGATCAGCCTTTTGATGCTGAGGTACAAGGGGTAAGGACAGGTTCATGCCTGTaGGCAGGACAGCCATTGAGT | + |
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Preference number: 2 (lower is better) Translates to: RGLSCHDQPFDAEVQGVRTGSCL*AGQPLS Trigger: ACTCAATGGCTGTCCTGCCCACAGGCATGAACCTGT...CCTTACCCCTTGTACCTCAGCATCAAAAGGCTGATCGTGGCAACTCAGACCTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| 3UTR-3UTR TCA 90 bp | TTCCAACAAGCGAGGACAGACACAGTTCACAGAAGCTCGAAGTTTAGTGAGTACGACACATTCTGGAAATaGCAGGTGCCTAAGGTGAAG | + |
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Preference number: 2 (lower is better) Translates to: FQQARTDTVHRSSKFSEYDTFWK*QVPKVK Trigger: CTTCACCTTAGGCACCTGTCATTTCCAGAATGTGTC...GTACTCACTAAACTTCGAGCTTCTGTGAACTGTGTCTGTCCTCGCTTGTTGGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| 3UTR-3UTR TCA 90 bp | CAACAGAAAAACAAAATCCCTCAGAAAGGCTCCAAAGTAGAAGTTCCATTAGTAGAGTACCTGGGCTACTaGAGGATCTGTGAACTAAGG | + |
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Preference number: 2 (lower is better) Translates to: QQKNKIPQKGSKVEVPLVEYLGY*RICELR Trigger: CCTTAGTTCACAGATCCTTCAGTAGCCCAGGTACTC...TACTAATGGAACTTCTACTTTGGAGCCTTTCTGAGGGATTTTGTTTTTCTGTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| 3UTR TCA 72 bp | GCCCCACAGGTTCATGCCTGTGGGCAGGACAGCCATTaGGTTGGTCAGCCTAGGCTATACAGTGATTCCCAA | + |
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Preference number: 3 (lower is better) Translates to: APQVHACGQDSH*VGQPRLYSDSQ Trigger: TTGGGAATCACTGTATAGCCTAGGCTGACCAACTCAATGGCTGTCCTGCCCACAGGCATGAACCTGTGGGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| 3UTR TCA 72 bp | CACACACACACACACATTAGGAGTGGGCAACAGGGTTaGAGAGTTCCACTGTGGGATGGAGCAAATGACCAG | + |
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Preference number: 3 (lower is better) Translates to: HTHTHIRSGQQG*RVPLWDGANDQ Trigger: CTGGTCATTTGCTCCATCCCACAGTGGAACTCTTCAACCCTGTTGCCCACTCCTAATGTGTGTGTGTGTGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| 3UTR CCA 72 bp | GGTGAAGAGAGACAGGGTGCATGGGTGTTGTTTGTATaGCAGCAGGTAGTATGCACTGTTGCAATAAGGGAC | + |
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Preference number: 3 (lower is better) Translates to: GEERQGAWVLFV*QQVVCTVAIRD Trigger: GTCCCTTATTGCAACAGTGCATACTACCTGCTGCCATACAAACAACACCCATGCACCCTGTCTCTCTTCACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| 3UTR CCA 72 bp | AGCAGGGGCAATACTGAGCTGAGAGGTCAATTTCAATaGTATTCAGCAGGGGCTGGGTTAATGCTAGCAGTG | + |
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Preference number: 3 (lower is better) Translates to: SRGNTELRGQFQ*YSAGAGLMLAV Trigger: CACTGCTAGCATTAACCCAGCCCCTGCTGAATACCATTGAAATTGACCTCTCAGCTCAGTATTGCCCCTGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| 3UTR TCA 72 bp | CCACAGACACATTCTGGAAATGACAGGTGCCTAAGGTaGAGAGAGACAGGGTGCATGGGTGTTGTTTGTATG | + |
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Preference number: 3 (lower is better) Translates to: PQTHSGNDRCLR*RETGCMGVVCM Trigger: CATACAAACAACACCCATGCACCCTGTCTCTCTTCACCTTAGGCACCTGTCATTTCCAGAATGTGTCTGTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| 3UTR GCA 72 bp | GGTGTTGTTTGTATGGCAGCAGGTAGTATGCACTGTTaGAATAAGGGACAACAAGGCACCAAGAGGTTTGTC | + |
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Preference number: 3 (lower is better) Translates to: GVVCMAAGSMHC*NKGQQGTKRFV Trigger: GACAAACCTCTTGGTGCCTTGTTGTCCCTTATTGCAACAGTGCATACTACCTGCTGCCATACAAACAACACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| 3UTR GCA 72 bp | ATAAAGTGTACAGAGAGGTACTGTGAACCAGACACATaGAGCAGAGTTAGGCCAAACCATTTCCTTTCCATT | + |
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Preference number: 3 (lower is better) Translates to: IKCTERYCEPDT*SRVRPNHFLSI Trigger: AATGGAAAGGAAATGGTTTGGCCTAACTCTGCTGCATGTGTCTGGTTCACAGTACCTCTCTGTACACTTTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| 3UTR GCA 72 bp | AATAAGAGATTCTATATAGCATATGAAGCTAATACATaGCTCCACACTCAACCAACTACCCACAACAGAAAA | + |
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Preference number: 3 (lower is better) Translates to: NKRFYIAYEANT*LHTQPTTHNRK Trigger: TTTTCTGTTGTGGGTAGTTGGTTGAGTGTGGAGGCATGTATTAGCTTCATATGCTATATAGAATCTCTTATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| CDS-3UTR GCA 90 bp | AAGGTTAGGAGCCCCACAGGTTCATGCCTGTGGGCAGGACAGCCATTGAGTTGGTCAGAAGGCACCATGTaGTCCCCCAGCACCTCCTGC | + |
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Preference number: 4 (lower is better) Translates to: KVRSPTGSCLWAGQPLSWSEGTM*SPSTSC Trigger: GCAGGAGGTGCTGGGGGAGCACATGGTGCCTTCTGA...CCAACTCAATGGCTGTCCTGCCCACAGGCATGAACCTGTGGGGCTCCTAACCTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| CDS-3UTR TCA 90 bp | AAGGTTAGGAGCCCCACAGGTTCATGCCTGTGGGCAGGACAGCCATTGAGTTGGAAGGCCTCAGGCCAGTaGCCCTCCTTCTGTAGAGAG | + |
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Preference number: 4 (lower is better) Translates to: KVRSPTGSCLWAGQPLSWKASGQ*PSFCRE Trigger: CTCTCTACAGAAGGAGGGTCACTGGCCTGAGGCCTT...CCAACTCAATGGCTGTCCTGCCCACAGGCATGAACCTGTGGGGCTCCTAACCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| CDS-3UTR GCA 90 bp | TTCCACTGTGGGATGGAGCAAATGACCAGCAGGGGCAATACTGAGCTGAGAGGTCTCACCAGGAAGCGCTaGCCCTGTGCTGTTTCCACC | + |
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Preference number: 4 (lower is better) Translates to: FHCGMEQMTSRGNTELRGLTRKR*PCAVST Trigger: GGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAG...ACCTCTCAGCTCAGTATTGCCCCTGCTGGTCATTTGCTCCATCCCACAGTGGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| 3UTR CAA 72 bp | CACAGGTTCATGCCTGTGGGCAGGACAGCCATTGAGTaGGTCAGCCTAGGCTATACAGTGATTCCCAAGCAA | + |
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Preference number: 4 (lower is better) Translates to: HRFMPVGRTAIE*VSLGYTVIPKQ Trigger: TTGCTTGGGAATCACTGTATAGCCTAGGCTGACCAACTCAATGGCTGTCCTGCCCACAGGCATGAACCTGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| CDS-3UTR TCA 90 bp | ATACGTGACCAAGGCTTCCACCACCGAAGAGACTTCACCATGAGCTTCCCTCCAGGAAATCCCCTCTCTTaGTCCAGATGTTCTTGCGGT | + |
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Preference number: 4 (lower is better) Translates to: IRDQGFHHRRDFTMSFPPGNPLS*SRCSCG Trigger: ACCGCAAGAACATCTGGATCAAGAGAGGGGATTTCC...TGGAGGGAAGCTCATGGTGAAGTCTCTTCGGTGGTGGAAGCCTTGGTCACGTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| CDS-3UTR GCA 90 bp | AAGGTTAGGAGCCCCACAGGTTCATGCCTGTGGGCAGGACAGCCATTGAGTTGGAGCGGACATGGTTCTTaGAGAGCACAAAAGAGATCT | + |
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Preference number: 4 (lower is better) Translates to: KVRSPTGSCLWAGQPLSWSGHGS*RAQKRS Trigger: AGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCT...CCAACTCAATGGCTGTCCTGCCCACAGGCATGAACCTGTGGGGCTCCTAACCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| CDS-3UTR GCA 90 bp | AGAGGTCTGAGTTGCCACGATCAGCCTTTTGATGCTGAGGTACAAGGGGTAAGGGCTGTTTCCACCTCATaGAGATTGTTCCCAGGAGTC | + |
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Preference number: 4 (lower is better) Translates to: RGLSCHDQPFDAEVQGVRAVSTS*RLFPGV Trigger: GACTCCTGGGAACAATCTGCATGAGGTGGAAACAGC...CCTTACCCCTTGTACCTCAGCATCAAAAGGCTGATCGTGGCAACTCAGACCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| CDS-3UTR GCA 90 bp | TTCCAACAAGCGAGGACAGACACAGTTCACAGAAGCTCGAAGTTTAGTGAGTACGGTATTTGGAGGGCATaGTCACCAGGAAGCGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: FQQARTDTVHRSSKFSEYGIWRA*SPGSAA Trigger: GGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACC...GTACTCACTAAACTTCGAGCTTCTGTGAACTGTGTCTGTCCTCGCTTGTTGGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| CDS-3UTR CCA 90 bp | ATACGTGACCAAGGCTTCCACCACCGAAGAGACTTCACCATGAGCTTCCCTCCATTCACTATTTGCTGGTaGTCAGAAGGCACCATGTGC | + |
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Preference number: 4 (lower is better) Translates to: IRDQGFHHRRDFTMSFPPFTICW*SEGTMC Trigger: GCACATGGTGCCTTCTGACCACCAGCAAATAGTGAA...TGGAGGGAAGCTCATGGTGAAGTCTCTTCGGTGGTGGAAGCCTTGGTCACGTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| CDS-3UTR CCA 90 bp | GGCCAAACCATTTCCTTTCCATTCTCCTCATACGTGACCAAGGCTTCCACCACCTGTTCTTGCGGTATTTaGAGGGCATGCTCACCAGGA | + |
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Preference number: 4 (lower is better) Translates to: GQTISFPFSSYVTKASTTCSCGI*RACSPG Trigger: TCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACA...GGTGGTGGAAGCCTTGGTCACGTATGAGGAGAATGGAAAGGAAATGGTTTGGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| CDS-3UTR TCA 90 bp | GGCCAAACCATTTCCTTTCCATTCTCCTCATACGTGACCAAGGCTTCCACCACCTGTTCCCAGGAGTCCTaGGGACTTTCACTATTTGCT | + |
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Preference number: 4 (lower is better) Translates to: GQTISFPFSSYVTKASTTCSQES*GLSLFA Trigger: AGCAAATAGTGAAAGTCCTCAGGACTCCTGGGAACA...GGTGGTGGAAGCCTTGGTCACGTATGAGGAGAATGGAAAGGAAATGGTTTGGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| CDS-3UTR CCA 90 bp | ATACGTGACCAAGGCTTCCACCACCGAAGAGACTTCACCATGAGCTTCCCTCCATGTAGAGAGCGGACATaGTTCTTGCAGAGCACAAAA | + |
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Preference number: 4 (lower is better) Translates to: IRDQGFHHRRDFTMSFPPCRERT*FLQSTK Trigger: TTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACA...TGGAGGGAAGCTCATGGTGAAGTCTCTTCGGTGGTGGAAGCCTTGGTCACGTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| CDS-3UTR TCA 90 bp | TTCCTTTCCATTCTCCTCATACGTGACCAAGGCTTCCACCACCGAAGAGACTTCGCAGGGAGTTCTGGTTaGCTCTCTCTGTTCATATTG | + |
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Preference number: 4 (lower is better) Translates to: FLSILLIRDQGFHHRRDFAGSSG*LSLFIL Trigger: CAATATGAACAGAGAGAGTCAACCAGAACTCCCTGC...GAAGTCTCTTCGGTGGTGGAAGCCTTGGTCACGTATGAGGAGAATGGAAAGGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| CDS-3UTR GCA 90 bp | TTAATTCTTTTAGGTCAGTTCAGAAAGGGGCCATCTTTGTCCTCATCCAAAGGAGAAGCGCTGCCCCTGTaGTGTTTCCACCTCATGCAG | + |
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Preference number: 4 (lower is better) Translates to: LILLGQFRKGPSLSSSKGEALPL*CFHLMQ Trigger: CTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTC...TCCTTTGGATGAGGACAAAGATGGCCCCTTTCTGAACTGACCTAAAAGAATTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| CDS-3UTR CCA 90 bp | TTCCTTTCCATTCTCCTCATACGTGACCAAGGCTTCCACCACCGAAGAGACTTCACTTTCACTATTTGCTaGTGGTCAGAAGGCACCATG | + |
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Preference number: 4 (lower is better) Translates to: FLSILLIRDQGFHHRRDFTFTIC*WSEGTM Trigger: CATGGTGCCTTCTGACCACCAGCAAATAGTGAAAGT...GAAGTCTCTTCGGTGGTGGAAGCCTTGGTCACGTATGAGGAGAATGGAAAGGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| CDS-3UTR GCA 90 bp | TTCCAACAAGCGAGGACAGACACAGTTCACAGAAGCTCGAAGTTTAGTGAGTACAGGACTTTCACTATTTaGTGGTGGTCAGAAGGCACC | + |
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Preference number: 4 (lower is better) Translates to: FQQARTDTVHRSSKFSEYRTFTI*WWSEGT Trigger: GGTGCCTTCTGACCACCAGCAAATAGTGAAAGTCCT...GTACTCACTAAACTTCGAGCTTCTGTGAACTGTGTCTGTCCTCGCTTGTTGGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| 3UTR CAA 72 bp | ACTGTTGCAATAAGGGACAACAAGGCACCAAGAGGTTaGTCCTCAGCTGTGCTTAAGAGGCAAGTGAGTACT | + |
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Preference number: 4 (lower is better) Translates to: TVAIRDNKAPRG*SSAVLKRQVST Trigger: AGTACTCACTTGCCTCTTAAGCACAGCTGAGGACAAACCTCTTGGTGCCTTGTTGTCCCTTATTGCAACAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| CDS-3UTR TCA 90 bp | CAACAGAAAAACAAAATCCCTCAGAAAGGCTCCAAAGTAGAAGTTCCATTAGTAGTCTGTGATTGGTGTTaGCAAAGAGGTCAGAATCAT | + |
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Preference number: 4 (lower is better) Translates to: QQKNKIPQKGSKVEVPLVVCDWC*QRGQNH Trigger: ATGATTCTGACCTCTTTGTCAACACCAATCACAGAC...TACTAATGGAACTTCTACTTTGGAGCCTTTCTGAGGGATTTTGTTTTTCTGTTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| CDS GCA 90 bp | CTTGCGGTATTTGGAGGGCATGCTCACCAGGAAGCGCTGCCCCTGTaGTGTTTCCACCTCATGCAGATTGTTCCCAGGAGTCCTGAGGAC | + |
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Preference number: 5 (lower is better) Translates to: LAVFGGHAHQEALPL*CFHLMQIVPRSPED Trigger: GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| CDS GCA 90 bp | GGCATGCTCACCAGGAAGCGCTGCCCCTGTGCTGTTTCCACCTCATaGAGATTGTTCCCAGGAGTCCTGAGGACTTTCACTATTTGCTGG | + |
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Preference number: 5 (lower is better) Translates to: GMLTRKRCPCAVSTS*RLFPGVLRTFTICW Trigger: CCAGCAAATAGTGAAAGTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| CDS-3UTR CAA 90 bp | TTCCACTGTGGGATGGAGCAAATGACCAGCAGGGGCAATACTGAGCTGAGAGGTTCCACCTCATGCAGATaGTTCCCAGGAGTCCTGAGG | + |
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Preference number: 5 (lower is better) Translates to: FHCGMEQMTSRGNTELRGSTSCR*FPGVLR Trigger: CCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGA...ACCTCTCAGCTCAGTATTGCCCCTGCTGGTCATTTGCTCCATCCCACAGTGGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| CDS-3UTR CAA 90 bp | ATACGTGACCAAGGCTTCCACCACCGAAGAGACTTCACCATGAGCTTCCCTCCATTGATCCAGATGTTCTaGCGGTATTTGGAGGGCATG | + |
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Preference number: 5 (lower is better) Translates to: IRDQGFHHRRDFTMSFPPLIQMF*RYLEGM Trigger: CATGCCCTCCAAATACCGCAAGAACATCTGGATCAA...TGGAGGGAAGCTCATGGTGAAGTCTCTTCGGTGGTGGAAGCCTTGGTCACGTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| CDS-3UTR CAA 90 bp | TTCCAACAAGCGAGGACAGACACAGTTCACAGAAGCTCGAAGTTTAGTGAGTACATGTTCTTGCGGTATTaGGAGGGCATGCTCACCAGG | + |
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Preference number: 5 (lower is better) Translates to: FQQARTDTVHRSSKFSEYMFLRY*EGMLTR Trigger: CCTGGTGAGCATGCCCTCCAAATACCGCAAGAACAT...GTACTCACTAAACTTCGAGCTTCTGTGAACTGTGTCTGTCCTCGCTTGTTGGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| CDS TCA 90 bp | CTTCACTCTCCTCCTCACTCTCATGATACTGTCTGTGATTGGTGTTaGCAAAGAGGTCAGAATCATCTTCAGAACTTGACCCTTCTCCTG | + |
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Preference number: 5 (lower is better) Translates to: LHSPPHSHDTVCDWC*QRGQNHLQNLTLLL Trigger: CAGGAGAAGGGTCAAGTTCTGAAGATGATTCTGACCTCTTTGTCAACACCAATCACAGACAGTATCATGAGAGTGAGGAGGAGAGTGAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| CDS-3UTR CAA 90 bp | CAACAGAAAAACAAAATCCCTCAGAAAGGCTCCAAAGTAGAAGTTCCATTAGTAGAGCGGACATGGTTCTaGCAGAGCACAAAAGAGATC | + |
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Preference number: 5 (lower is better) Translates to: QQKNKIPQKGSKVEVPLVERTWF*QSTKEI Trigger: GATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTC...TACTAATGGAACTTCTACTTTGGAGCCTTTCTGAGGGATTTTGTTTTTCTGTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| CDS GCA 72 bp | TTTGGAGGGCATGCTCACCAGGAAGCGCTGCCCCTGTaGTGTTTCCACCTCATGCAGATTGTTCCCAGGAGT | + |
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Preference number: 6 (lower is better) Translates to: FGGHAHQEALPL*CFHLMQIVPRS Trigger: ACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| CDS GCA 72 bp | ACCAGGAAGCGCTGCCCCTGTGCTGTTTCCACCTCATaGAGATTGTTCCCAGGAGTCCTGAGGACTTTCACT | + |
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Preference number: 6 (lower is better) Translates to: TRKRCPCAVSTS*RLFPGVLRTFT Trigger: AGTGAAAGTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| CDS GCA 72 bp | TTGCGGTATTTGGAGGGCATGCTCACCAGGAAGCGCTaGCCCTGTGCTGTTTCCACCTCATGCAGATTGTTC | + |
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Preference number: 6 (lower is better) Translates to: LRYLEGMLTRKR*PCAVSTSCRLF Trigger: GAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| CDS CCA 72 bp | TTGTTCCCAGGAGTCCTGAGGACTTTCACTATTTGCTaGTGGTCAGAAGGCACCATGTGCTCCCCCAGCACC | + |
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Preference number: 6 (lower is better) Translates to: LFPGVLRTFTIC*WSEGTMCSPST Trigger: GGTGCTGGGGGAGCACATGGTGCCTTCTGACCACCAGCAAATAGTGAAAGTCCTCAGGACTCCTGGGAACAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| CDS CAA 72 bp | CAGATTGTTCCCAGGAGTCCTGAGGACTTTCACTATTaGCTGGTGGTCAGAAGGCACCATGTGCTCCCCCAG | + |
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Preference number: 6 (lower is better) Translates to: QIVPRSPEDFHY*LVVRRHHVLPQ Trigger: CTGGGGGAGCACATGGTGCCTTCTGACCACCAGCAAATAGTGAAAGTCCTCAGGACTCCTGGGAACAATCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| CDS CAA 72 bp | AAATCCCCTCTCTTGATCCAGATGTTCTTGCGGTATTaGGAGGGCATGCTCACCAGGAAGCGCTGCCCCTGT | + |
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Preference number: 6 (lower is better) Translates to: KSPLLIQMFLRY*EGMLTRKRCPC Trigger: ACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAGGGGATTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| CDS CAA 90 bp | ACAATGAGGAAATCCCCTCTCTTGATCCAGATGTTCTTGCGGTATTaGGAGGGCATGCTCACCAGGAAGCGCTGCCCCTGTGCTGTTTCC | + |
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Preference number: 6 (lower is better) Translates to: TMRKSPLLIQMFLRY*EGMLTRKRCPCAVS Trigger: GGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAGGGGATTTCCTCATTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| CDS CAA 90 bp | ATAGGGTCAACAATGAGGAAATCCCCTCTCTTGATCCAGATGTTCTaGCGGTATTTGGAGGGCATGCTCACCAGGAAGCGCTGCCCCTGT | + |
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Preference number: 6 (lower is better) Translates to: IGSTMRKSPLLIQMF*RYLEGMLTRKRCPC Trigger: ACAGGGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAGGGGATTTCCTCATTGTTGACCCTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| CDS CAA 72 bp | ACAATGAGGAAATCCCCTCTCTTGATCCAGATGTTCTaGCGGTATTTGGAGGGCATGCTCACCAGGAAGCGC | + |
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Preference number: 6 (lower is better) Translates to: TMRKSPLLIQMF*RYLEGMLTRKR Trigger: GCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAGGGGATTTCCTCATTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| CDS TCA 72 bp | CTGTTTCCACCTCATGCAGATTGTTCCCAGGAGTCCTaGGGACTTTCACTATTTGCTGGTGGTCAGAAGGCA | + |
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Preference number: 6 (lower is better) Translates to: LFPPHADCSQES*GLSLFAGGQKA Trigger: TGCCTTCTGACCACCAGCAAATAGTGAAAGTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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| CDS TCA 72 bp | CCTCCTCACTCTCATGATACTGTCTGTGATTGGTGTTaGCAAAGAGGTCAGAATCATCTTCAGAACTTGACC | + |
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Preference number: 6 (lower is better) Translates to: PPHSHDTVCDWC*QRGQNHLQNLT Trigger: GGTCAAGTTCTGAAGATGATTCTGACCTCTTTGTCAACACCAATCACAGACAGTATCATGAGAGTGAGGAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025759.9 |
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