Pregenerated sensors for EIF1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035530Ensembl transcript IDs: ENSMUST00000049385.14, ENSMUST00000151513.2, ENSMUST00000152521.2
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GAGTTGAAGCCTCTACAGCTAGCCACACAGCCAATGGCACCAGCTTaGCATTTGTTCCGGGCTGGCCTCACCCTTCATGTCGCAACACCT | + |
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Preference number: 1 (lower is better) Translates to: ELKPLQLATQPMAPA*HLFRAGLTLHVATP Trigger: AGGTGTTGCGACATGAAGGGTGAGGCCAGCCCGGAACAAATGCCAAGCTGGTGCCATTGGCTGTGTGGCTAGCTGTAGAGGCTTCAACTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049385.14 |
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| 3UTR GCA 90 bp | GTAGACACAATGGTTCAATTGACCACTGTTACTAAAACTTCCCTATaGCACCCCCAAGTACTGTTTGAAAGTGGGAATGTCTACATGTAT | + |
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Preference number: 1 (lower is better) Translates to: VDTMVQLTTVTKTSL*HPQVLFESGNVYMY Trigger: ATACATGTAGACATTCCCACTTTCAAACAGTACTTGGGGGTGGCATAGGGAAGTTTTAGTAACAGTGGTCAATTGAACCATTGTGTCTAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000152521.2 |
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| 3UTR-3UTR GCA 90 bp | GCCCCAAGGAGCCTCTGGTCAGACATAGCCTCCTGTGATCTTGGGGTTCTTGGCTTCCAGGGTGGACACTaGCAGGGCTTACTGCTCAAC | + |
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Preference number: 2 (lower is better) Translates to: APRSLWSDIASCDLGVLGFQGGH*QGLLLN Trigger: GTTGAGCAGTAAGCCCTGGCAGTGTCCACCCTGGAA...GCCAAGAACCCCAAGATCACAGGAGGCTATGTCTGACCAGAGGCTCCTTGGGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049385.14 ENSMUST00000152521.2 |
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| 3UTR-3UTR TCA 90 bp | GGGCTGGCCTCACCCTTCATGTCGCAACACCTCCCGGCTAGGATAGATCTGCTTAGACATAGCCTCCTGTaGTCTTGGGGTTCTTGGCTT | + |
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Preference number: 2 (lower is better) Translates to: GLASPFMSQHLPARIDLLRHSLL*SWGSWL Trigger: AAGCCAAGAACCCCAAGATCACAGGAGGCTATGTCT...AAGCAGATCTATCCTAGCCGGGAGGTGTTGCGACATGAAGGGTGAGGCCAGCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049385.14 |
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| 3UTR-3UTR GCA 90 bp | TCAAGTGGTGACACTCTCCTAGGGCAGGGGACTCTGTCCAGGGAGCCCCAAGGAACTGCCAGGGCTTACTaGTCAACCTGTTTAAATGAG | + |
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Preference number: 2 (lower is better) Translates to: SSGDTLLGQGTLSREPQGTARAY*STCLNE Trigger: CTCATTTAAACAGGTTGAGCAGTAAGCCCTGGCAGT...TCCTTGGGGCTCCCTGGACAGAGTCCCCTGCCCTAGGAGAGTGTCACCACTTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049385.14 ENSMUST00000152521.2 |
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| 3UTR-3UTR TCA 90 bp | TGTTACCCATTCTGTTCAAGTGGTGACACTCTCCTAGGGCAGGGGACTCTGTCCGGTTCTTGGCTTGGCTaGAACCTTGTCATTGCTTTG | + |
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Preference number: 2 (lower is better) Translates to: CYPFCSSGDTLLGQGTLSGSWLG*NLVIAL Trigger: CAAAGCAATGACAAGGTTTCAGCCAAGCCAAGAACC...GGACAGAGTCCCCTGCCCTAGGAGAGTGTCACCACTTGAACAGAATGGGTAACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049385.14 ENSMUST00000152521.2 |
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| 3UTR-3UTR CCA 90 bp | ACTGAGTTGAAGCCTCTACAGCTAGCCACACAGCCAATGGCACCAGCTTGGCATTTGGGGTTCTTGGCTTaGCTGAAACCTTGTCATTGC | + |
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Preference number: 2 (lower is better) Translates to: TELKPLQLATQPMAPAWHLGFLA*LKPCHC Trigger: GCAATGACAAGGTTTCAGCCAAGCCAAGAACCCCAA...ATGCCAAGCTGGTGCCATTGGCTGTGTGGCTAGCTGTAGAGGCTTCAACTCAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049385.14 |
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| 3UTR-3UTR TCA 90 bp | TGTTACCCATTCTGTTCAAGTGGTGACACTCTCCTAGGGCAGGGGACTCTGTCCAAAGGTAGCCCTTTCTaGATTCTACCTGGTCAGATA | + |
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Preference number: 2 (lower is better) Translates to: CYPFCSSGDTLLGQGTLSKGSPF*ILPGQI Trigger: TATCTGACCAGGTAGAATTCAGAAAGGGCTACCTTT...GGACAGAGTCCCCTGCCCTAGGAGAGTGTCACCACTTGAACAGAATGGGTAACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049385.14 |
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| 3UTR-3UTR TCA 90 bp | TCTGCAAAAAGAGGACAAGGGAGAGGGACAGGTTACATGACGTCAACAGATTCTCCCCCAAGTACTGTTTaGAAGTGGGAATGTCTACAT | + |
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Preference number: 2 (lower is better) Translates to: SAKRGQGRGTGYMTSTDSPPSTV*KWECLH Trigger: ATGTAGACATTCCCACTTTCAAACAGTACTTGGGGG...AGAATCTGTTGACGTCATGTAACCTGTCCCTCTCCCTTGTCCTCTTTTTGCAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000152521.2 |
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| 3UTR CCA 72 bp | ACAGCCAATGGCACCAGCTTGGCATTTGTTCCGGGCTaGCCTCACCCTTCATGTCGCAACACCTCCCGGCTA | + |
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Preference number: 3 (lower is better) Translates to: TANGTSLAFVPG*PHPSCRNTSRL Trigger: TAGCCGGGAGGTGTTGCGACATGAAGGGTGAGGCCAGCCCGGAACAAATGCCAAGCTGGTGCCATTGGCTGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049385.14 |
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| 3UTR CCA 72 bp | CCTCTACAGCTAGCCACACAGCCAATGGCACCAGCTTaGCATTTGTTCCGGGCTGGCCTCACCCTTCATGTC | + |
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Preference number: 3 (lower is better) Translates to: PLQLATQPMAPA*HLFRAGLTLHV Trigger: GACATGAAGGGTGAGGCCAGCCCGGAACAAATGCCAAGCTGGTGCCATTGGCTGTGTGGCTAGCTGTAGAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049385.14 |
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| 3UTR-3UTR CAA 90 bp | TCAAGTGGTGACACTCTCCTAGGGCAGGGGACTCTGTCCAGGGAGCCCCAAGGAAACCTTGTCATTGCTTaGTTCCAGGGTGGACACTGC | + |
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Preference number: 3 (lower is better) Translates to: SSGDTLLGQGTLSREPQGNLVIA*FQGGHC Trigger: GCAGTGTCCACCCTGGAACAAAGCAATGACAAGGTT...TCCTTGGGGCTCCCTGGACAGAGTCCCCTGCCCTAGGAGAGTGTCACCACTTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049385.14 ENSMUST00000152521.2 |
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| 3UTR-3UTR CAA 90 bp | GGGCTGGCCTCACCCTTCATGTCGCAACACCTCCCGGCTAGGATAGATCTGCTTGGCTTGGCTGAAACCTaGTCATTGCTTTGTTCCAGG | + |
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Preference number: 3 (lower is better) Translates to: GLASPFMSQHLPARIDLLGLAET*SLLCSR Trigger: CCTGGAACAAAGCAATGACAAGGTTTCAGCCAAGCC...AAGCAGATCTATCCTAGCCGGGAGGTGTTGCGACATGAAGGGTGAGGCCAGCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049385.14 |
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| 3UTR TCA 72 bp | ATAGCTGGGGCAGTGTTACCCATTCTGTTCAAGTGGTaGCACTCTCCTAGGGCAGGGGACTCTGTCCAGGGA | + |
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Preference number: 3 (lower is better) Translates to: IAGAVLPILFKW*HSPRAGDSVQG Trigger: TCCCTGGACAGAGTCCCCTGCCCTAGGAGAGTGTCACCACTTGAACAGAATGGGTAACACTGCCCCAGCTAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049385.14 |
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| 3UTR-3UTR CAA 90 bp | TGTTACCCATTCTGTTCAAGTGGTGACACTCTCCTAGGGCAGGGGACTCTGTCCGCTGAAACCTTGTCATaGCTTTGTTCCAGGGTGGAC | + |
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Preference number: 3 (lower is better) Translates to: CYPFCSSGDTLLGQGTLSAETLS*LCSRVD Trigger: GTCCACCCTGGAACAAAGCAATGACAAGGTTTCAGC...GGACAGAGTCCCCTGCCCTAGGAGAGTGTCACCACTTGAACAGAATGGGTAACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049385.14 ENSMUST00000152521.2 |
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| 3UTR-3UTR CAA 90 bp | GTTGAAGCCTCTACAGCTAGCCACACAGCCAATGGCACCAGCTTGGCATTTGTTAACCTTGTCATTGCTTaGTTCCAGGGTGGACACTGC | + |
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Preference number: 3 (lower is better) Translates to: VEASTASHTANGTSLAFVNLVIA*FQGGHC Trigger: GCAGTGTCCACCCTGGAACAAAGCAATGACAAGGTT...AACAAATGCCAAGCTGGTGCCATTGGCTGTGTGGCTAGCTGTAGAGGCTTCAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049385.14 |
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| 3UTR-3UTR CAA 90 bp | TACACCTTGCAAGGAGTCCCAATAAAGAAGAGTACTTCAGTCTATCCCAGTAGAACCCCCAAGTACTGTTaGAAAGTGGGAATGTCTACA | + |
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Preference number: 3 (lower is better) Translates to: YTLQGVPIKKSTSVYPSRTPKYC*KVGMST Trigger: TGTAGACATTCCCACTTTCAAACAGTACTTGGGGGT...TCTACTGGGATAGACTGAAGTACTCTTCTTTATTGGGACTCCTTGCAAGGTGTA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000152521.2 |
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| 3UTR GCA 72 bp | ATGGTTCAATTGACCACTGTTACTAAAACTTCCCTATaGCACCCCCAAGTACTGTTTGAAAGTGGGAATGTC | + |
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Preference number: 3 (lower is better) Translates to: MVQLTTVTKTSL*HPQVLFESGNV Trigger: GACATTCCCACTTTCAAACAGTACTTGGGGGTGGCATAGGGAAGTTTTAGTAACAGTGGTCAATTGAACCAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000152521.2 |
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| 3UTR CAA 72 bp | CAGCTAGCCACACAGCCAATGGCACCAGCTTGGCATTaGTTCCGGGCTGGCCTCACCCTTCATGTCGCAACA | + |
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Preference number: 4 (lower is better) Translates to: QLATQPMAPAWH*FRAGLTLHVAT Trigger: TGTTGCGACATGAAGGGTGAGGCCAGCCCGGAACAAATGCCAAGCTGGTGCCATTGGCTGTGTGGCTAGCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049385.14 |
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| 3UTR CAA 72 bp | GCCTCTACAGCTAGCCACACAGCCAATGGCACCAGCTaGGCATTTGTTCCGGGCTGGCCTCACCCTTCATGT | + |
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Preference number: 4 (lower is better) Translates to: ASTASHTANGTS*AFVPGWPHPSC Trigger: ACATGAAGGGTGAGGCCAGCCCGGAACAAATGCCAAGCTGGTGCCATTGGCTGTGTGGCTAGCTGTAGAGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049385.14 |
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| 3UTR CAA 72 bp | AGCTTGTTCCTTCACATGGCACTGGCTCGTACTGAGTaGAAGCCTCTACAGCTAGCCACACAGCCAATGGCA | + |
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Preference number: 4 (lower is better) Translates to: SLFLHMALARTE*KPLQLATQPMA Trigger: TGCCATTGGCTGTGTGGCTAGCTGTAGAGGCTTCAACTCAGTACGAGCCAGTGCCATGTGAAGGAACAAGCT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049385.14 |
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| CDS TCA 72 bp | GCGGGGCCTTCCCTCCCAGCTCCGAGACAACGACGGTaGCGTAGAGGACATGACGCAGGGGTGGCGGGAGGG | + |
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Preference number: 6 (lower is better) Translates to: AGPSLPAPRQRR*RRGHDAGVAGG Trigger: CCCTCCCGCCACCCCTGCGTCATGTCCTCTACGTCACCGTCGTTGTCTCGGAGCTGGGAGGGAAGGCCCCGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000151513.2 |
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