Pregenerated sensors for EI24 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000062762Ensembl transcript IDs: ENSMUST00000115086.13, ENSMUST00000163192.11, ENSMUST00000184235.2, ENSMUST00000238932.2, ENSMUST00000239021.2
Found 36 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CAGTGGCCAACAGTAAATTTCATCTTCAGAGTAAGGTTCAGATTCTCCGAGCATCTTGGCAGTGGGTTCTaGCTTCCACGGCAGGGGGAG | + |
|
Preference number: 2 (lower is better) Translates to: QWPTVNFIFRVRFRFSEHLGSGF*LPRQGE Trigger: CTCCCCCTGCCGTGGAAGGCAGAACCCACTGCCAAG...ATGCTCGGAGAATCTGAACCTTACTCTGAAGATGAAATTTACTGTTGGCCACTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000115086.13 ENSMUST00000163192.11 ENSMUST00000238932.2 ENSMUST00000239021.2 |
||
| 3UTR-3UTR TCA 90 bp | CAGTGGCCAACAGTAAATTTCATCTTCAGAGTAAGGTTCAGATTCTCCGAGCATCCCAGCCAGTTTGGCTaGGGTCTATCTGCCCCAACT | + |
|
Preference number: 2 (lower is better) Translates to: QWPTVNFIFRVRFRFSEHPSQFG*GLSAPT Trigger: AGTTGGGGCAGATAGACCTCAGCCAAACTGGCTGGG...ATGCTCGGAGAATCTGAACCTTACTCTGAAGATGAAATTTACTGTTGGCCACTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000115086.13 ENSMUST00000163192.11 ENSMUST00000238932.2 ENSMUST00000239021.2 |
||
| 3UTR-3UTR GCA 90 bp | CAGTGGCCAACAGTAAATTTCATCTTCAGAGTAAGGTTCAGATTCTCCGAGCATTGGCTGAGGTCTATCTaGCCCAACTCTTCAGGCTCC | + |
|
Preference number: 2 (lower is better) Translates to: QWPTVNFIFRVRFRFSEHWLRSI*PNSSGS Trigger: GGAGCCTGAAGAGTTGGGGCAGATAGACCTCAGCCA...ATGCTCGGAGAATCTGAACCTTACTCTGAAGATGAAATTTACTGTTGGCCACTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000115086.13 ENSMUST00000163192.11 ENSMUST00000238932.2 ENSMUST00000239021.2 |
||
| 3UTR-3UTR TCA 90 bp | AAATTTCATCTTCAGAGTAAGGTTCAGATTCTCCGAGCATACTATGATGCAGTGCCCAGCCAGTTTGGCTaGGGTCTATCTGCCCCAACT | + |
|
Preference number: 2 (lower is better) Translates to: KFHLQSKVQILRAYYDAVPSQFG*GLSAPT Trigger: AGTTGGGGCAGATAGACCTCAGCCAAACTGGCTGGG...CACTGCATCATAGTATGCTCGGAGAATCTGAACCTTACTCTGAAGATGAAATTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000115086.13 ENSMUST00000163192.11 ENSMUST00000238932.2 ENSMUST00000239021.2 |
||
| 3UTR-3UTR CCA 90 bp | CAGTGGCCAACAGTAAATTTCATCTTCAGAGTAAGGTTCAGATTCTCCGAGCATTATAGAGGGAGTGACTaGAGCAACTGGAATGCCCCT | + |
|
Preference number: 2 (lower is better) Translates to: QWPTVNFIFRVRFRFSEHYRGSD*SNWNAP Trigger: AGGGGCATTCCAGTTGCTCCAGTCACTCCCTCTATA...ATGCTCGGAGAATCTGAACCTTACTCTGAAGATGAAATTTACTGTTGGCCACTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000115086.13 ENSMUST00000163192.11 ENSMUST00000238932.2 ENSMUST00000239021.2 |
||
| 3UTR-3UTR TCA 90 bp | CAGTGGCCAACAGTAAATTTCATCTTCAGAGTAAGGTTCAGATTCTCCGAGCATAAGTGGGAGGGTAAATaGCACAAGGAAAGGGGGAAA | + |
|
Preference number: 2 (lower is better) Translates to: QWPTVNFIFRVRFRFSEHKWEGK*HKERGK Trigger: TTTCCCCCTTTCCTTGTGTCATTTACCCTCCCACTT...ATGCTCGGAGAATCTGAACCTTACTCTGAAGATGAAATTTACTGTTGGCCACTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000115086.13 ENSMUST00000163192.11 ENSMUST00000238932.2 ENSMUST00000239021.2 |
||
| 3UTR-3UTR TCA 90 bp | AAATTTCATCTTCAGAGTAAGGTTCAGATTCTCCGAGCATACTATGATGCAGTGAAGTGGGAGGGTAAATaGCACAAGGAAAGGGGGAAA | + |
|
Preference number: 2 (lower is better) Translates to: KFHLQSKVQILRAYYDAVKWEGK*HKERGK Trigger: TTTCCCCCTTTCCTTGTGTCATTTACCCTCCCACTT...CACTGCATCATAGTATGCTCGGAGAATCTGAACCTTACTCTGAAGATGAAATTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000115086.13 ENSMUST00000163192.11 ENSMUST00000238932.2 ENSMUST00000239021.2 |
||
| 3UTR-3UTR CCA 90 bp | AAATTTCATCTTCAGAGTAAGGTTCAGATTCTCCGAGCATACTATGATGCAGTGGTACCACCCCATAGCTaGGAAACTTTAAATGGACCA | + |
|
Preference number: 2 (lower is better) Translates to: KFHLQSKVQILRAYYDAVVPPHS*ETLNGP Trigger: TGGTCCATTTAAAGTTTCCCAGCTATGGGGTGGTAC...CACTGCATCATAGTATGCTCGGAGAATCTGAACCTTACTCTGAAGATGAAATTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000115086.13 ENSMUST00000163192.11 ENSMUST00000238932.2 ENSMUST00000239021.2 |
||
| CDS-3UTR CCA 90 bp | ATACTGGAGTCAGGAAGATTCCAATTCAAAGACAAGGGACTATGCAGAGGGCCCTTCCGCTCTACACTCTaGGGTCTCCTCTGGGCCAAG | + |
|
Preference number: 4 (lower is better) Translates to: ILESGRFQFKDKGLCRGPFRSTL*GLLWAK Trigger: CTTGGCCCAGAGGAGACCCCAGAGTGTAGAGCGGAA...GGGCCCTCTGCATAGTCCCTTGTCTTTGAATTGGAATCTTCCTGACTCCAGTAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000115086.13 ENSMUST00000163192.11 ENSMUST00000238932.2 ENSMUST00000239021.2 |
||
| CDS-3UTR GCA 90 bp | ATACTGGAGTCAGGAAGATTCCAATTCAAAGACAAGGGACTATGCAGAGGGCCCGGCCAAGAGGCTACTTaGCCTTCTTCGACGCTGTTC | + |
|
Preference number: 4 (lower is better) Translates to: ILESGRFQFKDKGLCRGPGQEAT*PSSTLF Trigger: GAACAGCGTCGAAGAAGGGCAAGTAGCCTCTTGGCC...GGGCCCTCTGCATAGTCCCTTGTCTTTGAATTGGAATCTTCCTGACTCCAGTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000115086.13 ENSMUST00000163192.11 ENSMUST00000238932.2 ENSMUST00000239021.2 |
||
| CDS-3UTR CCA 90 bp | CAGTGGCCAACAGTAAATTTCATCTTCAGAGTAAGGTTCAGATTCTCCGAGCATCTCTGGGGTCTCCTCTaGGCCAAGAGGCTACTTGCC | + |
|
Preference number: 4 (lower is better) Translates to: QWPTVNFIFRVRFRFSEHLWGLL*AKRLLA Trigger: GGCAAGTAGCCTCTTGGCCCAGAGGAGACCCCAGAG...ATGCTCGGAGAATCTGAACCTTACTCTGAAGATGAAATTTACTGTTGGCCACTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000115086.13 ENSMUST00000163192.11 ENSMUST00000238932.2 ENSMUST00000239021.2 |
||
| CDS-3UTR CCA 90 bp | CAGTGGCCAACAGTAAATTTCATCTTCAGAGTAAGGTTCAGATTCTCCGAGCATTTCCGCTCTACACTCTaGGGTCTCCTCTGGGCCAAG | + |
|
Preference number: 4 (lower is better) Translates to: QWPTVNFIFRVRFRFSEHFRSTL*GLLWAK Trigger: CTTGGCCCAGAGGAGACCCCAGAGTGTAGAGCGGAA...ATGCTCGGAGAATCTGAACCTTACTCTGAAGATGAAATTTACTGTTGGCCACTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000115086.13 ENSMUST00000163192.11 ENSMUST00000238932.2 ENSMUST00000239021.2 |
||
| CDS-3UTR GCA 90 bp | CAGTGGCCAACAGTAAATTTCATCTTCAGAGTAAGGTTCAGATTCTCCGAGCATGGCCAAGAGGCTACTTaGCCTTCTTCGACGCTGTTC | + |
|
Preference number: 4 (lower is better) Translates to: QWPTVNFIFRVRFRFSEHGQEAT*PSSTLF Trigger: GAACAGCGTCGAAGAAGGGCAAGTAGCCTCTTGGCC...ATGCTCGGAGAATCTGAACCTTACTCTGAAGATGAAATTTACTGTTGGCCACTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000115086.13 ENSMUST00000163192.11 ENSMUST00000238932.2 ENSMUST00000239021.2 |
||
| CDS-3UTR CCA 90 bp | AAATTTCATCTTCAGAGTAAGGTTCAGATTCTCCGAGCATACTATGATGCAGTGCTCTGGGGTCTCCTCTaGGCCAAGAGGCTACTTGCC | + |
|
Preference number: 4 (lower is better) Translates to: KFHLQSKVQILRAYYDAVLWGLL*AKRLLA Trigger: GGCAAGTAGCCTCTTGGCCCAGAGGAGACCCCAGAG...CACTGCATCATAGTATGCTCGGAGAATCTGAACCTTACTCTGAAGATGAAATTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000115086.13 ENSMUST00000163192.11 ENSMUST00000238932.2 ENSMUST00000239021.2 |
||
| CDS-3UTR TCA 90 bp | ATACTGGAGTCAGGAAGATTCCAATTCAAAGACAAGGGACTATGCAGAGGGCCCATGAGGTTTCCTCCCTaGTACTTCAAATGCCAAGTC | + |
|
Preference number: 4 (lower is better) Translates to: ILESGRFQFKDKGLCRGPMRFPP*YFKCQV Trigger: GACTTGGCATTTGAAGTATCAGGGAGGAAACCTCAT...GGGCCCTCTGCATAGTCCCTTGTCTTTGAATTGGAATCTTCCTGACTCCAGTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000115086.13 ENSMUST00000163192.11 ENSMUST00000238932.2 ENSMUST00000239021.2 |
||
| CDS-3UTR CCA 90 bp | AAATTTCATCTTCAGAGTAAGGTTCAGATTCTCCGAGCATACTATGATGCAGTGTTCCGCTCTACACTCTaGGGTCTCCTCTGGGCCAAG | + |
|
Preference number: 4 (lower is better) Translates to: KFHLQSKVQILRAYYDAVFRSTL*GLLWAK Trigger: CTTGGCCCAGAGGAGACCCCAGAGTGTAGAGCGGAA...CACTGCATCATAGTATGCTCGGAGAATCTGAACCTTACTCTGAAGATGAAATTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000115086.13 ENSMUST00000163192.11 ENSMUST00000238932.2 ENSMUST00000239021.2 |
||
| CDS-3UTR TCA 90 bp | ATACTGGAGTCAGGAAGATTCCAATTCAAAGACAAGGGACTATGCAGAGGGCCCAACATCTCCATGAAGTaGTGGATCTCCAATAATCCG | + |
|
Preference number: 4 (lower is better) Translates to: ILESGRFQFKDKGLCRGPNISMK*WISNNP Trigger: CGGATTATTGGAGATCCATCACTTCATGGAGATGTT...GGGCCCTCTGCATAGTCCCTTGTCTTTGAATTGGAATCTTCCTGACTCCAGTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000115086.13 ENSMUST00000163192.11 ENSMUST00000238932.2 ENSMUST00000239021.2 |
||
| CDS-3UTR GCA 90 bp | AAATTTCATCTTCAGAGTAAGGTTCAGATTCTCCGAGCATACTATGATGCAGTGGGCCAAGAGGCTACTTaGCCTTCTTCGACGCTGTTC | + |
|
Preference number: 4 (lower is better) Translates to: KFHLQSKVQILRAYYDAVGQEAT*PSSTLF Trigger: GAACAGCGTCGAAGAAGGGCAAGTAGCCTCTTGGCC...CACTGCATCATAGTATGCTCGGAGAATCTGAACCTTACTCTGAAGATGAAATTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000115086.13 ENSMUST00000163192.11 ENSMUST00000238932.2 ENSMUST00000239021.2 |
||
| CDS-3UTR GCA 90 bp | CAGTGGCCAACAGTAAATTTCATCTTCAGAGTAAGGTTCAGATTCTCCGAGCATCAGCCATCTCTCCACTaGCCAGACTATCAAATACAG | + |
|
Preference number: 4 (lower is better) Translates to: QWPTVNFIFRVRFRFSEHQPSLH*PDYQIQ Trigger: CTGTATTTGATAGTCTGGGCAGTGGAGAGATGGCTG...ATGCTCGGAGAATCTGAACCTTACTCTGAAGATGAAATTTACTGTTGGCCACTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115086.13 ENSMUST00000239021.2 |
||
| CDS-3UTR CCA 90 bp | ATACTGGAGTCAGGAAGATTCCAATTCAAAGACAAGGGACTATGCAGAGGGCCCGAGAATAGGCGCAACTaGAAAAGATATGCTTTTCCA | + |
|
Preference number: 4 (lower is better) Translates to: ILESGRFQFKDKGLCRGPENRRN*KRYAFP Trigger: TGGAAAAGCATATCTTTTCCAGTTGCGCCTATTCTC...GGGCCCTCTGCATAGTCCCTTGTCTTTGAATTGGAATCTTCCTGACTCCAGTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000115086.13 ENSMUST00000163192.11 ENSMUST00000238932.2 ENSMUST00000239021.2 |
||
| CDS-3UTR TCA 90 bp | CAGTGGCCAACAGTAAATTTCATCTTCAGAGTAAGGTTCAGATTCTCCGAGCATATGAGGTTTCCTCCCTaGTACTTCAAATGCCAAGTC | + |
|
Preference number: 4 (lower is better) Translates to: QWPTVNFIFRVRFRFSEHMRFPP*YFKCQV Trigger: GACTTGGCATTTGAAGTATCAGGGAGGAAACCTCAT...ATGCTCGGAGAATCTGAACCTTACTCTGAAGATGAAATTTACTGTTGGCCACTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000115086.13 ENSMUST00000163192.11 ENSMUST00000238932.2 ENSMUST00000239021.2 |
||
| CDS-3UTR CCA 90 bp | CAGTGGCCAACAGTAAATTTCATCTTCAGAGTAAGGTTCAGATTCTCCGAGCATGAGAATAGGCGCAACTaGAAAAGATATGCTTTTCCA | + |
|
Preference number: 4 (lower is better) Translates to: QWPTVNFIFRVRFRFSEHENRRN*KRYAFP Trigger: TGGAAAAGCATATCTTTTCCAGTTGCGCCTATTCTC...ATGCTCGGAGAATCTGAACCTTACTCTGAAGATGAAATTTACTGTTGGCCACTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000115086.13 ENSMUST00000163192.11 ENSMUST00000238932.2 ENSMUST00000239021.2 |
||
| CDS-3UTR TCA 90 bp | AAATTTCATCTTCAGAGTAAGGTTCAGATTCTCCGAGCATACTATGATGCAGTGAACATCTCCATGAAGTaGTGGATCTCCAATAATCCG | + |
|
Preference number: 4 (lower is better) Translates to: KFHLQSKVQILRAYYDAVNISMK*WISNNP Trigger: CGGATTATTGGAGATCCATCACTTCATGGAGATGTT...CACTGCATCATAGTATGCTCGGAGAATCTGAACCTTACTCTGAAGATGAAATTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000115086.13 ENSMUST00000163192.11 ENSMUST00000238932.2 ENSMUST00000239021.2 |
||
| CDS-3UTR GCA 90 bp | AAATTTCATCTTCAGAGTAAGGTTCAGATTCTCCGAGCATACTATGATGCAGTGCAACTGGAAAAGATATaGTTTTCCAGGAGTCTTTGC | + |
|
Preference number: 4 (lower is better) Translates to: KFHLQSKVQILRAYYDAVQLEKI*FSRSLC Trigger: GCAAAGACTCCTGGAAAAGCATATCTTTTCCAGTTG...CACTGCATCATAGTATGCTCGGAGAATCTGAACCTTACTCTGAAGATGAAATTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000115086.13 ENSMUST00000163192.11 ENSMUST00000238932.2 ENSMUST00000239021.2 |
||
| CDS-3UTR CAA 90 bp | ATACTGGAGTCAGGAAGATTCCAATTCAAAGACAAGGGACTATGCAGAGGGCCCGGGCCAAGAGGCTACTaGCCCTTCTTCGACGCTGTT | + |
|
Preference number: 5 (lower is better) Translates to: ILESGRFQFKDKGLCRGPGPRGY*PFFDAV Trigger: AACAGCGTCGAAGAAGGGCAAGTAGCCTCTTGGCCC...GGGCCCTCTGCATAGTCCCTTGTCTTTGAATTGGAATCTTCCTGACTCCAGTAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000115086.13 ENSMUST00000163192.11 ENSMUST00000238932.2 ENSMUST00000239021.2 |
||
| CDS-3UTR CAA 90 bp | ATACTGGAGTCAGGAAGATTCCAATTCAAAGACAAGGGACTATGCAGAGGGCCCGCAGCAGCTTTCAGTTaGGCAGGAGAAGGATGTGGC | + |
|
Preference number: 5 (lower is better) Translates to: ILESGRFQFKDKGLCRGPAAAFS*AGEGCG Trigger: GCCACATCCTTCTCCTGCCAAACTGAAAGCTGCTGC...GGGCCCTCTGCATAGTCCCTTGTCTTTGAATTGGAATCTTCCTGACTCCAGTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000115086.13 ENSMUST00000163192.11 ENSMUST00000238932.2 ENSMUST00000239021.2 |
||
| CDS-3UTR CAA 90 bp | ATACTGGAGTCAGGAAGATTCCAATTCAAAGACAAGGGACTATGCAGAGGGCCCTCCGAGCATCTAGCTTaGAGATGGTACAGATGCCCC | + |
|
Preference number: 5 (lower is better) Translates to: ILESGRFQFKDKGLCRGPSEHLA*RWYRCP Trigger: GGGGCATCTGTACCATCTCAAAGCTAGATGCTCGGA...GGGCCCTCTGCATAGTCCCTTGTCTTTGAATTGGAATCTTCCTGACTCCAGTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000115086.13 ENSMUST00000163192.11 ENSMUST00000238932.2 ENSMUST00000239021.2 |
||
| CDS-3UTR CAA 90 bp | ATACTGGAGTCAGGAAGATTCCAATTCAAAGACAAGGGACTATGCAGAGGGCCCACGTGGTTCACTCTCTaGCTTCCGCTCTACACTCTG | + |
|
Preference number: 5 (lower is better) Translates to: ILESGRFQFKDKGLCRGPTWFTL*LPLYTL Trigger: CAGAGTGTAGAGCGGAAGCAAGAGAGTGAACCACGT...GGGCCCTCTGCATAGTCCCTTGTCTTTGAATTGGAATCTTCCTGACTCCAGTAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000115086.13 ENSMUST00000163192.11 ENSMUST00000238932.2 ENSMUST00000239021.2 |
||
| CDS GCA 90 bp | ATGCCCCAGATGGAGTCTTTGATTCCCTTGAACTTGGGATTTTTCTaGCTCAATAGAGGCATCTGCCACCATGCACAGTCAATGACTAGG | + |
|
Preference number: 5 (lower is better) Translates to: MPQMESLIPLNLGFF*LNRGICHHAQSMTR Trigger: CCTAGTCATTGACTGTGCATGGTGGCAGATGCCTCTATTGAGGCAGAAAAATCCCAAGTTCAAGGGAATCAAAGACTCCATCTGGGGCAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000184235.2 |
||
| CDS-3UTR CAA 90 bp | CAGTGGCCAACAGTAAATTTCATCTTCAGAGTAAGGTTCAGATTCTCCGAGCATGCAGCAGCTTTCAGTTaGGCAGGAGAAGGATGTGGC | + |
|
Preference number: 5 (lower is better) Translates to: QWPTVNFIFRVRFRFSEHAAAFS*AGEGCG Trigger: GCCACATCCTTCTCCTGCCAAACTGAAAGCTGCTGC...ATGCTCGGAGAATCTGAACCTTACTCTGAAGATGAAATTTACTGTTGGCCACTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000115086.13 ENSMUST00000163192.11 ENSMUST00000238932.2 ENSMUST00000239021.2 |
||
| CDS-3UTR CAA 90 bp | CAGTGGCCAACAGTAAATTTCATCTTCAGAGTAAGGTTCAGATTCTCCGAGCATTCCGAGCATCTAGCTTaGAGATGGTACAGATGCCCC | + |
|
Preference number: 5 (lower is better) Translates to: QWPTVNFIFRVRFRFSEHSEHLA*RWYRCP Trigger: GGGGCATCTGTACCATCTCAAAGCTAGATGCTCGGA...ATGCTCGGAGAATCTGAACCTTACTCTGAAGATGAAATTTACTGTTGGCCACTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000115086.13 ENSMUST00000163192.11 ENSMUST00000238932.2 ENSMUST00000239021.2 |
||
| CDS-3UTR CAA 90 bp | AAATTTCATCTTCAGAGTAAGGTTCAGATTCTCCGAGCATACTATGATGCAGTGGGGCCAAGAGGCTACTaGCCCTTCTTCGACGCTGTT | + |
|
Preference number: 5 (lower is better) Translates to: KFHLQSKVQILRAYYDAVGPRGY*PFFDAV Trigger: AACAGCGTCGAAGAAGGGCAAGTAGCCTCTTGGCCC...CACTGCATCATAGTATGCTCGGAGAATCTGAACCTTACTCTGAAGATGAAATTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000115086.13 ENSMUST00000163192.11 ENSMUST00000238932.2 ENSMUST00000239021.2 |
||
| CDS-3UTR CAA 90 bp | AAATTTCATCTTCAGAGTAAGGTTCAGATTCTCCGAGCATACTATGATGCAGTGGCAGCAGCTTTCAGTTaGGCAGGAGAAGGATGTGGC | + |
|
Preference number: 5 (lower is better) Translates to: KFHLQSKVQILRAYYDAVAAAFS*AGEGCG Trigger: GCCACATCCTTCTCCTGCCAAACTGAAAGCTGCTGC...CACTGCATCATAGTATGCTCGGAGAATCTGAACCTTACTCTGAAGATGAAATTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000115086.13 ENSMUST00000163192.11 ENSMUST00000238932.2 ENSMUST00000239021.2 |
||
| CDS-3UTR CAA 90 bp | ATACTGGAGTCAGGAAGATTCCAATTCAAAGACAAGGGACTATGCAGAGGGCCCATTTCAATTCCTTTGTaGAACCAACGGTACTCAAAG | + |
|
Preference number: 5 (lower is better) Translates to: ILESGRFQFKDKGLCRGPISIPL*NQRYSK Trigger: CTTTGAGTACCGTTGGTTCAACAAAGGAATTGAAAT...GGGCCCTCTGCATAGTCCCTTGTCTTTGAATTGGAATCTTCCTGACTCCAGTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000115086.13 ENSMUST00000163192.11 ENSMUST00000238932.2 ENSMUST00000239021.2 |
||
| CDS-3UTR CAA 90 bp | AAATTTCATCTTCAGAGTAAGGTTCAGATTCTCCGAGCATACTATGATGCAGTGATTTCAATTCCTTTGTaGAACCAACGGTACTCAAAG | + |
|
Preference number: 5 (lower is better) Translates to: KFHLQSKVQILRAYYDAVISIPL*NQRYSK Trigger: CTTTGAGTACCGTTGGTTCAACAAAGGAATTGAAAT...CACTGCATCATAGTATGCTCGGAGAATCTGAACCTTACTCTGAAGATGAAATTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000115086.13 ENSMUST00000163192.11 ENSMUST00000238932.2 ENSMUST00000239021.2 |
||
| CDS GCA 72 bp | ATGGAGTCTTTGATTCCCTTGAACTTGGGATTTTTCTaGCTCAATAGAGGCATCTGCCACCATGCACAGTCA | + |
|
Preference number: 6 (lower is better) Translates to: MESLIPLNLGFF*LNRGICHHAQS Trigger: TGACTGTGCATGGTGGCAGATGCCTCTATTGAGGCAGAAAAATCCCAAGTTCAAGGGAATCAAAGACTCCAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000184235.2 |
||