RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for EGR1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038418

Ensembl transcript IDs: ENSMUST00000064795.6, ENSMUST00000165033.2

Found 188 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TGTTGGCCAACGGTCCTTCTACTCGTGAGTAGAAGGACTTGGCTCTaGGATCTTCCATCTGACCTAAGAGGTGGCCCCTCTTGCGGCCAT +
Preference number: 1 (lower is better)
Translates to: CWPTVLLLVSRRTWL*DLPSDLRGGPSCGH
Trigger: ATGGCCGCAAGAGGGGCCACCTCTTAGGTCAGATGGAAGATCTCAGAGCCAAGTCCTTCTACTCACGAGTAGAAGGACCGTTGGCCAACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
3UTR TCA 90 bp CTGAAGGGAGCAAGGGCCAGGCATGTGATGGAGAGGATACTGAAATaGTTTATCCAATACCATGCAAATCAAGTCCTTTGGATAGAGGTG +
Preference number: 1 (lower is better)
Translates to: LKGARARHVMERILK*FIQYHANQVLWIEV
Trigger: CACCTCTATCCAAAGGACTTGATTTGCATGGTATTGGATAAATCATTTCAGTATCCTCTCCATCACATGCCTGGCCCTTGCTCCCTTCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
3UTR-3UTR TCA 90 bp TCCTACCCCCTTAAGGCTAAGGTGAGCGTGTCCCTCACATCTGCGCATGTCAAGGCTGTTTCAGGCAGCTaGAGTCAAAGGGAACAGGAC +
Preference number: 2 (lower is better)
Translates to: SYPLKAKVSVSLTSAHVKAVSGS*SQREQD
Trigger: GTCCTGTTCCCTTTGACTTCAGCTGCCTGAAACAGC...CTTGACATGCGCAGATGTGAGGGACACGCTCACCTTAGCCTTAAGGGGGTAGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
3UTR-3UTR TCA 90 bp TGTCCCTCACATCTGCGCATGTCAAGCCATCGGCAAGGCGTGTCACACAAAAGGAGAAGGACTTGGCTCTaGGATCTTCCATCTGACCTA +
Preference number: 2 (lower is better)
Translates to: CPSHLRMSSHRQGVSHKRRRTWL*DLPSDL
Trigger: TAGGTCAGATGGAAGATCTCAGAGCCAAGTCCTTCT...CCTTTTGTGTGACACGCCTTGCCGATGGCTTGACATGCGCAGATGTGAGGGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
3UTR-3UTR GCA 90 bp TGTCCCTCACATCTGCGCATGTCAAGCCATCGGCAAGGCGTGTCACACAAAAGGAATCCATGGCACAGATaGTGTACAAAGATGCAGGGC +
Preference number: 2 (lower is better)
Translates to: CPSHLRMSSHRQGVSHKRNPWHR*CTKMQG
Trigger: GCCCTGCATCTTTGTACAGCATCTGTGCCATGGATT...CCTTTTGTGTGACACGCCTTGCCGATGGCTTGACATGCGCAGATGTGAGGGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
3UTR-3UTR TCA 90 bp TGTCCCTCACATCTGCGCATGTCAAGCCATCGGCAAGGCGTGTCACACAAAAGGAACGGAACAACACTCTaGCACATGCTCCAGTTAATA +
Preference number: 2 (lower is better)
Translates to: CPSHLRMSSHRQGVSHKRNGTTL*HMLQLI
Trigger: TATTAACTGGAGCATGTGTCAGAGTGTTGTTCCGTT...CCTTTTGTGTGACACGCCTTGCCGATGGCTTGACATGCGCAGATGTGAGGGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
3UTR-3UTR CCA 90 bp TCCTACCCCCTTAAGGCTAAGGTGAGCGTGTCCCTCACATCTGCGCATGTCAAGATAGAGGATCATCATTaGTTTGCTTGGCTTTGCTCC +
Preference number: 2 (lower is better)
Translates to: SYPLKAKVSVSLTSAHVKIEDHH*FAWLCS
Trigger: GGAGCAAAGCCAAGCAAACCAATGATGATCCTCTAT...CTTGACATGCGCAGATGTGAGGGACACGCTCACCTTAGCCTTAAGGGGGTAGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
3UTR-3UTR TCA 90 bp TGTCCCTCACATCTGCGCATGTCAAGCCATCGGCAAGGCGTGTCACACAAAAGGGAGAGGATACTGAAATaGTTTATCCAATACCATGCA +
Preference number: 2 (lower is better)
Translates to: CPSHLRMSSHRQGVSHKRERILK*FIQYHA
Trigger: TGCATGGTATTGGATAAATCATTTCAGTATCCTCTC...CCTTTTGTGTGACACGCCTTGCCGATGGCTTGACATGCGCAGATGTGAGGGACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
3UTR-3UTR TCA 90 bp CAACCAAACAAACCATACTTTGTCACATGTGAGAGTTACAGTCGAGCAGTATTTTGCAGGGCAGGGTTCTaGGGGCCCAAACCCATTTTT +
Preference number: 2 (lower is better)
Translates to: QPNKPYFVTCESYSRAVFCRAGF*GPKPIF
Trigger: AAAAATGGGTTTGGGCCCTCAGAACCCTGCCCTGCA...AAATACTGCTCGACTGTAACTCTCACATGTGACAAAGTATGGTTTGTTTGGTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
3UTR-3UTR TCA 90 bp ATCCAATACCATGCAAATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGAGAAGGACTTGGCTCTaGGATCTTCCATCTGACCTA +
Preference number: 2 (lower is better)
Translates to: IQYHANQVLWIEVKNLDMRRTWL*DLPSDL
Trigger: TAGGTCAGATGGAAGATCTCAGAGCCAAGTCCTTCT...CATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATTTGCATGGTATTGGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
3UTR-3UTR GCA 90 bp AATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGGCTGTTTCAGGCAGCCTTTTATGTCTTTCCTaGCTCTCCCTTTGCTTTCTT +
Preference number: 2 (lower is better)
Translates to: NQVLWIEVKNLDMAVSGSLLCLS*LSLCFL
Trigger: AAGAAAGCAAAGGGAGAGGCAGGAAAGACATAAAAG...GCTGCCTGAAACAGCCATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
3UTR-3UTR GCA 90 bp TGCAAATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGGCTGTTTCAGGCTTTTATGTCTTTCCTaGCTCTCCCTTTGCTTTCTT +
Preference number: 2 (lower is better)
Translates to: CKSSPLDRGEELGHGCFRLLCLS*LSLCFL
Trigger: AAGAAAGCAAAGGGAGAGGCAGGAAAGACATAAAAG...CCTGAAACAGCCATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATTTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
3UTR-3UTR CCA 90 bp AATGTCACAGCAGAGTCATCACAAAATAGAGGATCATCATTGGTTTGCTTGGCTGCAAATCAAGTCCTTTaGATAGAGGTGAAGAACTTG +
Preference number: 2 (lower is better)
Translates to: NVTAESSQNRGSSLVCLAANQVL*IEVKNL
Trigger: CAAGTTCTTCACCTCTATCCAAAGGACTTGATTTGC...AGCCAAGCAAACCAATGATGATCCTCTATTTTGTGATGACTCTGCTGTGACATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
3UTR-3UTR CCA 90 bp AATGTCACAGCAGAGTCATCACAAAATAGAGGATCATCATTGGTTTGCTTGGCTGGAAAACAAAATCCATaGCACAGATGCTGTACAAAG +
Preference number: 2 (lower is better)
Translates to: NVTAESSQNRGSSLVCLAGKQNP*HRCCTK
Trigger: CTTTGTACAGCATCTGTGCCATGGATTTTGTTTTCC...AGCCAAGCAAACCAATGATGATCCTCTATTTTGTGATGACTCTGCTGTGACATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
3UTR-3UTR CCA 90 bp AACCAAACAAACCATACTTTGTCACATGTGAGAGTTACAGTCGAGCAGTATTTAGCAAATCAAGTCCTTTaGATAGAGGTGAAGAACTTG +
Preference number: 2 (lower is better)
Translates to: NQTNHTLSHVRVTVEQYLANQVL*IEVKNL
Trigger: CAAGTTCTTCACCTCTATCCAAAGGACTTGATTTGC...TAAATACTGCTCGACTGTAACTCTCACATGTGACAAAGTATGGTTTGTTTGGTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
3UTR TCA 72 bp ACGGTCCTTCTACTCGTGAGTAGAAGGACTTGGCTCTaGGATCTTCCATCTGACCTAAGAGGTGGCCCCTCT +
Preference number: 3 (lower is better)
Translates to: TVLLLVSRRTWL*DLPSDLRGGPS
Trigger: AGAGGGGCCACCTCTTAGGTCAGATGGAAGATCTCAGAGCCAAGTCCTTCTACTCACGAGTAGAAGGACCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
3UTR-3UTR CAA 90 bp GCTAAGGTGAGCGTGTCCCTCACATCTGCGCATGTCAAGCCATCGGCAAGGCGTAATAGAGGATCATCATaGGTTTGCTTGGCTTTGCTC +
Preference number: 3 (lower is better)
Translates to: AKVSVSLTSAHVKPSARRNRGSS*VCLALL
Trigger: GAGCAAAGCCAAGCAAACCAATGATGATCCTCTATT...ACGCCTTGCCGATGGCTTGACATGCGCAGATGTGAGGGACACGCTCACCTTAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
3UTR TCA 72 bp AGTGAAAGGGCTGTTGGCCAACGGTCCTTCTACTCGTaGGTAGAAGGACTTGGCTCTGAGATCTTCCATCTG +
Preference number: 3 (lower is better)
Translates to: SERAVGQRSFYS*VEGLGSEIFHL
Trigger: CAGATGGAAGATCTCAGAGCCAAGTCCTTCTACTCACGAGTAGAAGGACCGTTGGCCAACAGCCCTTTCACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
3UTR-3UTR CAA 90 bp TGTCCCTCACATCTGCGCATGTCAAGCCATCGGCAAGGCGTGTCACACAAAAGGTGCAAATCAAGTCCTTaGGATAGAGGTGAAGAACTT +
Preference number: 3 (lower is better)
Translates to: CPSHLRMSSHRQGVSHKRCKSSP*DRGEEL
Trigger: AAGTTCTTCACCTCTATCCAAAGGACTTGATTTGCA...CCTTTTGTGTGACACGCCTTGCCGATGGCTTGACATGCGCAGATGTGAGGGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
3UTR TCA 72 bp GCAAGGGCCAGGCATGTGATGGAGAGGATACTGAAATaGTTTATCCAATACCATGCAAATCAAGTCCTTTGG +
Preference number: 3 (lower is better)
Translates to: ARARHVMERILK*FIQYHANQVLW
Trigger: CCAAAGGACTTGATTTGCATGGTATTGGATAAATCATTTCAGTATCCTCTCCATCACATGCCTGGCCCTTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
3UTR CCA 72 bp TTTAATTTTTCTGAAGGATACACACCACATATCCCATaGGCAATAGAGCGCATTCAATGTGTTTATAAGCCA +
Preference number: 3 (lower is better)
Translates to: FNFSEGYTPHIP*AIERIQCVYKP
Trigger: TGGCTTATAAACACATTGAATGCGCTCTATTGCCCATGGGATATGTGGTGTGTATCCTTCAGAAAAATTAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000064795.6
CDS-3UTR GCA 90 bp GCTAAGGTGAGCGTGTCCCTCACATCTGCGCATGTCAAGCCATCGGCAAGGCGTTGCTGCCGCTGTTGCTaGCGCCCCCACCACCGCCCC +
Preference number: 4 (lower is better)
Translates to: AKVSVSLTSAHVKPSARRCCRCC*RPHHRP
Trigger: GGGGCGGTGGTGGGGGCGGCAGCAACAGCGGCAGCA...ACGCCTTGCCGATGGCTTGACATGCGCAGATGTGAGGGACACGCTCACCTTAGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR GCA 90 bp TCCTACCCCCTTAAGGCTAAGGTGAGCGTGTCCCTCACATCTGCGCATGTCAAGTGCTGCCGCTGTTGCTaGCGCCCCCACCACCGCCCC +
Preference number: 4 (lower is better)
Translates to: SYPLKAKVSVSLTSAHVKCCRCC*RPHHRP
Trigger: GGGGCGGTGGTGGGGGCGGCAGCAACAGCGGCAGCA...CTTGACATGCGCAGATGTGAGGGACACGCTCACCTTAGCCTTAAGGGGGTAGGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR GCA 90 bp GCTAAGGTGAGCGTGTCCCTCACATCTGCGCATGTCAAGCCATCGGCAAGGCGTCCGAGTAGATGGGACTaGTGTCGTTGGACGGCACGG +
Preference number: 4 (lower is better)
Translates to: AKVSVSLTSAHVKPSARRPSRWD*CRWTAR
Trigger: CCGTGCCGTCCAACGACAGCAGTCCCATCTACTCGG...ACGCCTTGCCGATGGCTTGACATGCGCAGATGTGAGGGACACGCTCACCTTAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR GCA 90 bp TGTCCCTCACATCTGCGCATGTCAAGCCATCGGCAAGGCGTGTCACACAAAAGGGCAGGAGGCGGGTACTaGAAGGCTGTGCCTGCCGAG +
Preference number: 4 (lower is better)
Translates to: CPSHLRMSSHRQGVSHKRAGGGY*KAVPAE
Trigger: CTCGGCAGGCACAGCCTTGCAGTACCCGCCTCCTGC...CCTTTTGTGTGACACGCCTTGCCGATGGCTTGACATGCGCAGATGTGAGGGACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp GCTAAGGTGAGCGTGTCCCTCACATCTGCGCATGTCAAGCCATCGGCAAGGCGTTGGGACTGCTGTCGTTaGACGGCACGGCACAGCTCA +
Preference number: 4 (lower is better)
Translates to: AKVSVSLTSAHVKPSARRWDCCR*TARHSS
Trigger: TGAGCTGTGCCGTGCCGTCCAACGACAGCAGTCCCA...ACGCCTTGCCGATGGCTTGACATGCGCAGATGTGAGGGACACGCTCACCTTAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp GCTAAGGTGAGCGTGTCCCTCACATCTGCGCATGTCAAGCCATCGGCAAGGCGTGGGATGGGAATGAGGTaGTGGCAGGGGATGGGTAGG +
Preference number: 4 (lower is better)
Translates to: AKVSVSLTSAHVKPSARRGMGMR*WQGMGR
Trigger: CCTACCCATCCCCTGCCACCACCTCATTCCCATCCC...ACGCCTTGCCGATGGCTTGACATGCGCAGATGTGAGGGACACGCTCACCTTAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp GCTAAGGTGAGCGTGTCCCTCACATCTGCGCATGTCAAGCCATCGGCAAGGCGTAAGTGTTGCCACTGTTaGGTGCGGGCTCCAGGGAGA +
Preference number: 4 (lower is better)
Translates to: AKVSVSLTSAHVKPSARRKCCHC*VRAPGR
Trigger: TCTCCCTGGAGCCCGCACCCAACAGTGGCAACACTT...ACGCCTTGCCGATGGCTTGACATGCGCAGATGTGAGGGACACGCTCACCTTAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp TGTCCCTCACATCTGCGCATGTCAAGCCATCGGCAAGGCGTGTCACACAAAAGGCTCAGGGGCGGGCTCTaGGAGGCAGAGGAAGACGAT +
Preference number: 4 (lower is better)
Translates to: CPSHLRMSSHRQGVSHKRLRGGL*EAEEDD
Trigger: ATCGTCTTCCTCTGCCTCCCAGAGCCCGCCCCTGAG...CCTTTTGTGTGACACGCCTTGCCGATGGCTTGACATGCGCAGATGTGAGGGACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp GCTAAGGTGAGCGTGTCCCTCACATCTGCGCATGTCAAGCCATCGGCAAGGCGTATGGGAATGAGGTGGTaGCAGGGGATGGGTAGGAGG +
Preference number: 4 (lower is better)
Translates to: AKVSVSLTSAHVKPSARRMGMRW*QGMGRR
Trigger: CCTCCTACCCATCCCCTGCCACCACCTCATTCCCAT...ACGCCTTGCCGATGGCTTGACATGCGCAGATGTGAGGGACACGCTCACCTTAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR TCA 90 bp GCTAAGGTGAGCGTGTCCCTCACATCTGCGCATGTCAAGCCATCGGCAAGGCGTGTTGTCCATGGTGGGTaGGTGAGGAAAGGAGCCGAA +
Preference number: 4 (lower is better)
Translates to: AKVSVSLTSAHVKPSARRVVHGG*VRKGAE
Trigger: TTCGGCTCCTTTCCTCACTCACCCACCATGGACAAC...ACGCCTTGCCGATGGCTTGACATGCGCAGATGTGAGGGACACGCTCACCTTAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR TCA 90 bp TCCTACCCCCTTAAGGCTAAGGTGAGCGTGTCCCTCACATCTGCGCATGTCAAGAGCGGCCAGTATAGGTaGTGGGAGGCAACCGAGTCG +
Preference number: 4 (lower is better)
Translates to: SYPLKAKVSVSLTSAHVKSGQYR*WEATES
Trigger: CGACTCGGTTGCCTCCCATCACCTATACTGGCCGCT...CTTGACATGCGCAGATGTGAGGGACACGCTCACCTTAGCCTTAAGGGGGTAGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR GCA 90 bp TGTCCCTCACATCTGCGCATGTCAAGCCATCGGCAAGGCGTGTCACACAAAAGGTGCTGGTGCTGCTGCTaGTATTACCGCCGCTGCCCT +
Preference number: 4 (lower is better)
Translates to: CPSHLRMSSHRQGVSHKRCWCCC*YYRRCP
Trigger: AGGGCAGCGGCGGTAATAGCAGCAGCAGCACCAGCA...CCTTTTGTGTGACACGCCTTGCCGATGGCTTGACATGCGCAGATGTGAGGGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR GCA 90 bp TGTCCCTCACATCTGCGCATGTCAAGCCATCGGCAAGGCGTGTCACACAAAAGGCCGAGTAGATGGGACTaGTGTCGTTGGACGGCACGG +
Preference number: 4 (lower is better)
Translates to: CPSHLRMSSHRQGVSHKRPSRWD*CRWTAR
Trigger: CCGTGCCGTCCAACGACAGCAGTCCCATCTACTCGG...CCTTTTGTGTGACACGCCTTGCCGATGGCTTGACATGCGCAGATGTGAGGGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp TCCTACCCCCTTAAGGCTAAGGTGAGCGTGTCCCTCACATCTGCGCATGTCAAGCGGTTCTCCAGACCCTaGAAGGGCTTCTGGTCTGGG +
Preference number: 4 (lower is better)
Translates to: SYPLKAKVSVSLTSAHVKRFSRP*KGFWSG
Trigger: CCCAGACCAGAAGCCCTTCCAGGGTCTGGAGAACCG...CTTGACATGCGCAGATGTGAGGGACACGCTCACCTTAGCCTTAAGGGGGTAGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp TGTCCCTCACATCTGCGCATGTCAAGCCATCGGCAAGGCGTGTCACACAAAAGGGGGATGGGAATGAGGTaGTGGCAGGGGATGGGTAGG +
Preference number: 4 (lower is better)
Translates to: CPSHLRMSSHRQGVSHKRGMGMR*WQGMGR
Trigger: CCTACCCATCCCCTGCCACCACCTCATTCCCATCCC...CCTTTTGTGTGACACGCCTTGCCGATGGCTTGACATGCGCAGATGTGAGGGACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR GCA 90 bp TGTCCCTCACATCTGCGCATGTCAAGCCATCGGCAAGGCGTGTCACACAAAAGGACTGGGGAGCCCCGTTaGTCAGCAGCATCATCTCCT +
Preference number: 4 (lower is better)
Translates to: CPSHLRMSSHRQGVSHKRTGEPR*SAASSP
Trigger: AGGAGATGATGCTGCTGAGCAACGGGGCTCCCCAGT...CCTTTTGTGTGACACGCCTTGCCGATGGCTTGACATGCGCAGATGTGAGGGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR GCA 90 bp TCCTACCCCCTTAAGGCTAAGGTGAGCGTGTCCCTCACATCTGCGCATGTCAAGGGAGTGAGCGAAGGCTaGTGGGTACGGTTCTCCAGA +
Preference number: 4 (lower is better)
Translates to: SYPLKAKVSVSLTSAHVKGVSEG*WVRFSR
Trigger: TCTGGAGAACCGTACCCAGCAGCCTTCGCTCACTCC...CTTGACATGCGCAGATGTGAGGGACACGCTCACCTTAGCCTTAAGGGGGTAGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp GCTAAGGTGAGCGTGTCCCTCACATCTGCGCATGTCAAGCCATCGGCAAGGCGTGTAGGAGGTAGCCACTaGGGATGGGTAAGAAGAGAG +
Preference number: 4 (lower is better)
Translates to: AKVSVSLTSAHVKPSARRVGGSH*GWVRRE
Trigger: CTCTCTTCTTACCCATCCCCAGTGGCTACCTCCTAC...ACGCCTTGCCGATGGCTTGACATGCGCAGATGTGAGGGACACGCTCACCTTAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR TCA 90 bp TGTCCCTCACATCTGCGCATGTCAAGCCATCGGCAAGGCGTGTCACACAAAAGGGTTGTCCATGGTGGGTaGGTGAGGAAAGGAGCCGAA +
Preference number: 4 (lower is better)
Translates to: CPSHLRMSSHRQGVSHKRVVHGG*VRKGAE
Trigger: TTCGGCTCCTTTCCTCACTCACCCACCATGGACAAC...CCTTTTGTGTGACACGCCTTGCCGATGGCTTGACATGCGCAGATGTGAGGGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR TCA 90 bp TGTCCCTCACATCTGCGCATGTCAAGCCATCGGCAAGGCGTGTCACACAAAAGGTCCTGGGAGCCCGACTaGGTGGCGAAGGCTTTAATA +
Preference number: 4 (lower is better)
Translates to: CPSHLRMSSHRQGVSHKRSWEPD*VAKALI
Trigger: TATTAAAGCCTTCGCCACTCAGTCGGGCTCCCAGGA...CCTTTTGTGTGACACGCCTTGCCGATGGCTTGACATGCGCAGATGTGAGGGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR GCA 90 bp GCTAAGGTGAGCGTGTCCCTCACATCTGCGCATGTCAAGCCATCGGCAAGGCGTAACGGGTCAGAGATCTaGAGCGGAGACATCAATTGC +
Preference number: 4 (lower is better)
Translates to: AKVSVSLTSAHVKPSARRNGSEI*SGDINC
Trigger: GCAATTGATGTCTCCGCTGCAGATCTCTGACCCGTT...ACGCCTTGCCGATGGCTTGACATGCGCAGATGTGAGGGACACGCTCACCTTAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp GCTAAGGTGAGCGTGTCCCTCACATCTGCGCATGTCAAGCCATCGGCAAGGCGTTCATCTCCTCCAGTTTaGGGTAGTTGTCCATGGTGG +
Preference number: 4 (lower is better)
Translates to: AKVSVSLTSAHVKPSARRSSPPV*GSCPWW
Trigger: CCACCATGGACAACTACCCCAAACTGGAGGAGATGA...ACGCCTTGCCGATGGCTTGACATGCGCAGATGTGAGGGACACGCTCACCTTAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp TGTCCCTCACATCTGCGCATGTCAAGCCATCGGCAAGGCGTGTCACACAAAAGGGTGTGGATGCGGATATaGCGGGTAAGCTCATCCGAG +
Preference number: 4 (lower is better)
Translates to: CPSHLRMSSHRQGVSHKRVWMRI*RVSSSE
Trigger: CTCGGATGAGCTTACCCGCCATATCCGCATCCACAC...CCTTTTGTGTGACACGCCTTGCCGATGGCTTGACATGCGCAGATGTGAGGGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR GCA 90 bp AATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGGCTGTTTCAGGCAGCCGCCCCCGCTGCTGGTaGTGCTGCTGCTATTACCGC +
Preference number: 4 (lower is better)
Translates to: NQVLWIEVKNLDMAVSGSRPRCW*CCCYYR
Trigger: GCGGTAATAGCAGCAGCAGCACCAGCAGCGGGGGCG...GCTGCCTGAAACAGCCATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR GCA 90 bp ATCCAATACCATGCAAATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGCGCTGCTGCCGCTGTTaGTGCCGCCCCCACCACCGC +
Preference number: 4 (lower is better)
Translates to: IQYHANQVLWIEVKNLDMRCCRC*CRPHHR
Trigger: GCGGTGGTGGGGGCGGCAGCAACAGCGGCAGCAGCG...CATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATTTGCATGGTATTGGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR GCA 90 bp TGCAAATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGGCTGTTTCAGGCGCCCCCGCTGCTGGTaGTGCTGCTGCTATTACCGC +
Preference number: 4 (lower is better)
Translates to: CKSSPLDRGEELGHGCFRRPRCW*CCCYYR
Trigger: GCGGTAATAGCAGCAGCAGCACCAGCAGCGGGGGCG...CCTGAAACAGCCATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATTTGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp GCTAAGGTGAGCGTGTCCCTCACATCTGCGCATGTCAAGCCATCGGCAAGGCGTGTCTCCCTGTTGTTGTaGAAACAGATAGTCAGGGAT +
Preference number: 4 (lower is better)
Translates to: AKVSVSLTSAHVKPSARRVSLLL*KQIVRD
Trigger: ATCCCTGACTATCTGTTTCCACAACAACAGGGAGAC...ACGCCTTGCCGATGGCTTGACATGCGCAGATGTGAGGGACACGCTCACCTTAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp AATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGGCTGTTTCAGGCAGCGAAGGGCTTCTGGTCTaGGGTGCCCAGGCTCAGGTC +
Preference number: 4 (lower is better)
Translates to: NQVLWIEVKNLDMAVSGSEGLLV*GAQAQV
Trigger: GACCTGAGCCTGGGCACCCCAGACCAGAAGCCCTTC...GCTGCCTGAAACAGCCATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR TCA 90 bp TGCAAATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGGCTGTTTCAGGCAGACGGGAAGCTGCTaGCCTGGGTGGGGAAAGCAG +
Preference number: 4 (lower is better)
Translates to: CKSSPLDRGEELGHGCFRQTGSC*PGWGKQ
Trigger: CTGCTTTCCCCACCCAGGTCAGCAGCTTCCCGTCTG...CCTGAAACAGCCATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATTTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR GCA 90 bp AACCAAACAAACCATACTTTGTCACATGTGAGAGTTACAGTCGAGCAGTATTTACGCTGCTGCCGCTGTTaGTGCCGCCCCCACCACCGC +
Preference number: 4 (lower is better)
Translates to: NQTNHTLSHVRVTVEQYLRCCRC*CRPHHR
Trigger: GCGGTGGTGGGGGCGGCAGCAACAGCGGCAGCAGCG...TAAATACTGCTCGACTGTAACTCTCACATGTGACAAAGTATGGTTTGTTTGGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp TGCAAATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGGCTGTTTCAGGGGTGGTGGCAGGGGATaGGTAGGAGGTAGCCACTGG +
Preference number: 4 (lower is better)
Translates to: CKSSPLDRGEELGHGCFRGGGRG*VGGSHW
Trigger: CCAGTGGCTACCTCCTACCCATCCCCTGCCACCACC...CCTGAAACAGCCATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATTTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR TCA 90 bp TGCAAATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGGCTGTTTCAGGTCCATGGTGGGTGAGTaGGGAAAGGAGCCGAACGGG +
Preference number: 4 (lower is better)
Translates to: CKSSPLDRGEELGHGCFRSMVGE*GKEPNG
Trigger: CCCGTTCGGCTCCTTTCCTCACTCACCCACCATGGA...CCTGAAACAGCCATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATTTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR GCA 90 bp ATCCAATACCATGCAAATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGCACCACCGCCCCCGCTaGTGGTGCTGCTGCTGCTAT +
Preference number: 4 (lower is better)
Translates to: IQYHANQVLWIEVKNLDMHHRPR*WCCCCY
Trigger: ATAGCAGCAGCAGCACCAGCAGCGGGGGCGGTGGTG...CATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATTTGCATGGTATTGGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR GCA 90 bp AATGTCACAGCAGAGTCATCACAAAATAGAGGATCATCATTGGTTTGCTTGGCTGCAGGAGGCGGGTACTaGAAGGCTGTGCCTGCCGAG +
Preference number: 4 (lower is better)
Translates to: NVTAESSQNRGSSLVCLAAGGGY*KAVPAE
Trigger: CTCGGCAGGCACAGCCTTGCAGTACCCGCCTCCTGC...AGCCAAGCAAACCAATGATGATCCTCTATTTTGTGATGACTCTGCTGTGACATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp ATCCAATACCATGCAAATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGGCAGCACCGAGGAACTaGGGAGCCCCGTTGCTCAGC +
Preference number: 4 (lower is better)
Translates to: IQYHANQVLWIEVKNLDMAAPRN*GAPLLS
Trigger: GCTGAGCAACGGGGCTCCCCAGTTCCTCGGTGCTGC...CATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATTTGCATGGTATTGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp AATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGGCTGTTTCAGGCAGCAAGTGTTGCCACTGTTaGGTGCGGGCTCCAGGGAGA +
Preference number: 4 (lower is better)
Translates to: NQVLWIEVKNLDMAVSGSKCCHC*VRAPGR
Trigger: TCTCCCTGGAGCCCGCACCCAACAGTGGCAACACTT...GCTGCCTGAAACAGCCATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp AATGTCACAGCAGAGTCATCACAAAATAGAGGATCATCATTGGTTTGCTTGGCTCCCTGGAAGGGCTTCTaGTCTGGGGTGCCCAGGCTC +
Preference number: 4 (lower is better)
Translates to: NVTAESSQNRGSSLVCLAPWKGF*SGVPRL
Trigger: GAGCCTGGGCACCCCAGACCAGAAGCCCTTCCAGGG...AGCCAAGCAAACCAATGATGATCCTCTATTTTGTGATGACTCTGCTGTGACATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR TCA 90 bp AATGTCACAGCAGAGTCATCACAAAATAGAGGATCATCATTGGTTTGCTTGGCTAAAGGTGGTGGCCACTaGCGGCGACGGGAAGCCACT +
Preference number: 4 (lower is better)
Translates to: NVTAESSQNRGSSLVCLAKGGGH*RRREAT
Trigger: AGTGGCTTCCCGTCGCCGTCAGTGGCCACCACCTTT...AGCCAAGCAAACCAATGATGATCCTCTATTTTGTGATGACTCTGCTGTGACATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR TCA 90 bp ATCCAATACCATGCAAATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGCAGACGGGAAGCTGCTaGCCTGGGTGGGGAAAGCAG +
Preference number: 4 (lower is better)
Translates to: IQYHANQVLWIEVKNLDMQTGSC*PGWGKQ
Trigger: CTGCTTTCCCCACCCAGGTCAGCAGCTTCCCGTCTG...CATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATTTGCATGGTATTGGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR GCA 90 bp AATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGGCTGTTTCAGGCAGCAGCGGAGACATCAATTaGATCTCGGCCTTGGCCGCT +
Preference number: 4 (lower is better)
Translates to: NQVLWIEVKNLDMAVSGSSGDIN*ISALAA
Trigger: AGCGGCCAAGGCCGAGATGCAATTGATGTCTCCGCT...GCTGCCTGAAACAGCCATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR GCA 90 bp CAACCAAACAAACCATACTTTGTCACATGTGAGAGTTACAGTCGAGCAGTATTTCACCACCGCCCCCGCTaGTGGTGCTGCTGCTGCTAT +
Preference number: 4 (lower is better)
Translates to: QPNKPYFVTCESYSRAVFHHRPR*WCCCCY
Trigger: ATAGCAGCAGCAGCACCAGCAGCGGGGGCGGTGGTG...AAATACTGCTCGACTGTAACTCTCACATGTGACAAAGTATGGTTTGTTTGGTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR GCA 90 bp TGCAAATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGGCTGTTTCAGGCAGGCCACAAAGTGTTaGCACTGTTGGGTGCGGGCT +
Preference number: 4 (lower is better)
Translates to: CKSSPLDRGEELGHGCFRQATKC*HCWVRA
Trigger: AGCCCGCACCCAACAGTGGCAACACTTTGTGGCCTG...CCTGAAACAGCCATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATTTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR GCA 90 bp ATCCAATACCATGCAAATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGCTGCAAGGCTGTGCCTaGCGAGCCAGGAAAGGCCTG +
Preference number: 4 (lower is better)
Translates to: IQYHANQVLWIEVKNLDMLQGCA*RARKGL
Trigger: CAGGCCTTTCCTGGCTCGGCAGGCACAGCCTTGCAG...CATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATTTGCATGGTATTGGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp CAACCAAACAAACCATACTTTGTCACATGTGAGAGTTACAGTCGAGCAGTATTTGCAGCACCGAGGAACTaGGGAGCCCCGTTGCTCAGC +
Preference number: 4 (lower is better)
Translates to: QPNKPYFVTCESYSRAVFAAPRN*GAPLLS
Trigger: GCTGAGCAACGGGGCTCCCCAGTTCCTCGGTGCTGC...AAATACTGCTCGACTGTAACTCTCACATGTGACAAAGTATGGTTTGTTTGGTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp TGCAAATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGGCTGTTTCAGGCCTGGAAACCACCTTTaGTGGCAGGGTAGGCAGGAG +
Preference number: 4 (lower is better)
Translates to: CKSSPLDRGEELGHGCFRPGNHL*WQGRQE
Trigger: CTCCTGCCTACCCTGCCACCAAAGGTGGTTTCCAGG...CCTGAAACAGCCATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATTTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp AATGTCACAGCAGAGTCATCACAAAATAGAGGATCATCATTGGTTTGCTTGGCTGAAGGGCTTCTGGTCTaGGGTGCCCAGGCTCAGGTC +
Preference number: 4 (lower is better)
Translates to: NVTAESSQNRGSSLVCLAEGLLV*GAQAQV
Trigger: GACCTGAGCCTGGGCACCCCAGACCAGAAGCCCTTC...AGCCAAGCAAACCAATGATGATCCTCTATTTTGTGATGACTCTGCTGTGACATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp CAACCAAACAAACCATACTTTGTCACATGTGAGAGTTACAGTCGAGCAGTATTTCCCTGGAAGGGCTTCTaGTCTGGGGTGCCCAGGCTC +
Preference number: 4 (lower is better)
Translates to: QPNKPYFVTCESYSRAVFPWKGF*SGVPRL
Trigger: GAGCCTGGGCACCCCAGACCAGAAGCCCTTCCAGGG...AAATACTGCTCGACTGTAACTCTCACATGTGACAAAGTATGGTTTGTTTGGTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR TCA 90 bp ATCCAATACCATGCAAATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGAGCGGCCAGTATAGGTaGTGGGAGGCAACCGAGTCG +
Preference number: 4 (lower is better)
Translates to: IQYHANQVLWIEVKNLDMSGQYR*WEATES
Trigger: CGACTCGGTTGCCTCCCATCACCTATACTGGCCGCT...CATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATTTGCATGGTATTGGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR TCA 90 bp ATCCAATACCATGCAAATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGTGGGTAAGAAGAGAGTaGAGAGGCAGCCGGGGAGGC +
Preference number: 4 (lower is better)
Translates to: IQYHANQVLWIEVKNLDMWVRRE*RGSRGG
Trigger: GCCTCCCCGGCTGCCTCTTCACTCTCTTCTTACCCA...CATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATTTGCATGGTATTGGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR GCA 90 bp ATCCAATACCATGCAAATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGTGCTGGTGCTGCTGCTaGTATTACCGCCGCTGCCCT +
Preference number: 4 (lower is better)
Translates to: IQYHANQVLWIEVKNLDMCWCCC*YYRRCP
Trigger: AGGGCAGCGGCGGTAATAGCAGCAGCAGCACCAGCA...CATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATTTGCATGGTATTGGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR GCA 90 bp TGTCCCTCACATCTGCGCATGTCAAGCCATCGGCAAGGCGTGTCACACAAAAGGAAATGGATTTTGGTATaGCTCTTGCGTTCATCACTC +
Preference number: 4 (lower is better)
Translates to: CPSHLRMSSHRQGVSHKRKWILV*LLRSSL
Trigger: GAGTGATGAACGCAAGAGGCATACCAAAATCCATTT...CCTTTTGTGTGACACGCCTTGCCGATGGCTTGACATGCGCAGATGTGAGGGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp AATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGGCTGTTTCAGGCAGCTGGGGTAGTTGTCCATaGTGGGTGAGTGAGGAAAGG +
Preference number: 4 (lower is better)
Translates to: NQVLWIEVKNLDMAVSGSWGSCP*WVSEER
Trigger: CCTTTCCTCACTCACCCACCATGGACAACTACCCCA...GCTGCCTGAAACAGCCATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp AATGTCACAGCAGAGTCATCACAAAATAGAGGATCATCATTGGTTTGCTTGGCTTGGGACTGCTGTCGTTaGACGGCACGGCACAGCTCA +
Preference number: 4 (lower is better)
Translates to: NVTAESSQNRGSSLVCLAWDCCR*TARHSS
Trigger: TGAGCTGTGCCGTGCCGTCCAACGACAGCAGTCCCA...AGCCAAGCAAACCAATGATGATCCTCTATTTTGTGATGACTCTGCTGTGACATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp AATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGGCTGTTTCAGGCAGCGGGATCATGGGAACCTaGAAACCACCTTTGGTGGCA +
Preference number: 4 (lower is better)
Translates to: NQVLWIEVKNLDMAVSGSGIMGT*KPPLVA
Trigger: TGCCACCAAAGGTGGTTTCCAGGTTCCCATGATCCC...GCTGCCTGAAACAGCCATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp AATGTCACAGCAGAGTCATCACAAAATAGAGGATCATCATTGGTTTGCTTGGCTCGGTTCTCCAGACCCTaGAAGGGCTTCTGGTCTGGG +
Preference number: 4 (lower is better)
Translates to: NVTAESSQNRGSSLVCLARFSRP*KGFWSG
Trigger: CCCAGACCAGAAGCCCTTCCAGGGTCTGGAGAACCG...AGCCAAGCAAACCAATGATGATCCTCTATTTTGTGATGACTCTGCTGTGACATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp CAACCAAACAAACCATACTTTGTCACATGTGAGAGTTACAGTCGAGCAGTATTTGGTGGTGGCAGGGGATaGGTAGGAGGTAGCCACTGG +
Preference number: 4 (lower is better)
Translates to: QPNKPYFVTCESYSRAVFGGGRG*VGGSHW
Trigger: CCAGTGGCTACCTCCTACCCATCCCCTGCCACCACC...AAATACTGCTCGACTGTAACTCTCACATGTGACAAAGTATGGTTTGTTTGGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp TGTCCCTCACATCTGCGCATGTCAAGCCATCGGCAAGGCGTGTCACACAAAAGGAAATTTCAATTGTCCTaGGAGAAAAGGTCGCTGTCA +
Preference number: 4 (lower is better)
Translates to: CPSHLRMSSHRQGVSHKRKFQLS*EKRSLS
Trigger: TGACAGCGACCTTTTCTCCCAGGACAATTGAAATTT...CCTTTTGTGTGACACGCCTTGCCGATGGCTTGACATGCGCAGATGTGAGGGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR TCA 90 bp AACCAAACAAACCATACTTTGTCACATGTGAGAGTTACAGTCGAGCAGTATTTAAAAGGTGGTGGCCACTaGCGGCGACGGGAAGCCACT +
Preference number: 4 (lower is better)
Translates to: NQTNHTLSHVRVTVEQYLKGGGH*RRREAT
Trigger: AGTGGCTTCCCGTCGCCGTCAGTGGCCACCACCTTT...TAAATACTGCTCGACTGTAACTCTCACATGTGACAAAGTATGGTTTGTTTGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR GCA 90 bp AATGTCACAGCAGAGTCATCACAAAATAGAGGATCATCATTGGTTTGCTTGGCTCAGGCCACAAAGTGTTaGCACTGTTGGGTGCGGGCT +
Preference number: 4 (lower is better)
Translates to: NVTAESSQNRGSSLVCLAQATKC*HCWVRA
Trigger: AGCCCGCACCCAACAGTGGCAACACTTTGTGGCCTG...AGCCAAGCAAACCAATGATGATCCTCTATTTTGTGATGACTCTGCTGTGACATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR GCA 90 bp AACCAAACAAACCATACTTTGTCACATGTGAGAGTTACAGTCGAGCAGTATTTACTGCAAGGCTGTGCCTaGCGAGCCAGGAAAGGCCTG +
Preference number: 4 (lower is better)
Translates to: NQTNHTLSHVRVTVEQYLLQGCA*RARKGL
Trigger: CAGGCCTTTCCTGGCTCGGCAGGCACAGCCTTGCAG...TAAATACTGCTCGACTGTAACTCTCACATGTGACAAAGTATGGTTTGTTTGGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp AACCAAACAAACCATACTTTGTCACATGTGAGAGTTACAGTCGAGCAGTATTTACTCAGGGGCGGGCTCTaGGAGGCAGAGGAAGACGAT +
Preference number: 4 (lower is better)
Translates to: NQTNHTLSHVRVTVEQYLLRGGL*EAEEDD
Trigger: ATCGTCTTCCTCTGCCTCCCAGAGCCCGCCCCTGAG...TAAATACTGCTCGACTGTAACTCTCACATGTGACAAAGTATGGTTTGTTTGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp CAACCAAACAAACCATACTTTGTCACATGTGAGAGTTACAGTCGAGCAGTATTTGCGCAGCCGAGTAGATaGGACTGCTGTCGTTGGACG +
Preference number: 4 (lower is better)
Translates to: QPNKPYFVTCESYSRAVFAQPSR*DCCRWT
Trigger: CGTCCAACGACAGCAGTCCCATCTACTCGGCTGCGC...AAATACTGCTCGACTGTAACTCTCACATGTGACAAAGTATGGTTTGTTTGGTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp CAACCAAACAAACCATACTTTGTCACATGTGAGAGTTACAGTCGAGCAGTATTTGTGAGCGAAGGCTGCTaGGTACGGTTCTCCAGACCC +
Preference number: 4 (lower is better)
Translates to: QPNKPYFVTCESYSRAVFVSEGC*VRFSRP
Trigger: GGGTCTGGAGAACCGTACCCAGCAGCCTTCGCTCAC...AAATACTGCTCGACTGTAACTCTCACATGTGACAAAGTATGGTTTGTTTGGTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp ATCCAATACCATGCAAATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGGGCTTCTGGCCTGTGTaGATGCGGATATGGCGGGTA +
Preference number: 4 (lower is better)
Translates to: IQYHANQVLWIEVKNLDMGFWPV*MRIWRV
Trigger: TACCCGCCATATCCGCATCCACACAGGCCAGAAGCC...CATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATTTGCATGGTATTGGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp TGCAAATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGGCTGTTTCAGGATGCAGATTCGACACTaGAAGGGCTTCTGGCCTGTG +
Preference number: 4 (lower is better)
Translates to: CKSSPLDRGEELGHGCFRMQIRH*KGFWPV
Trigger: CACAGGCCAGAAGCCCTTCCAGTGTCGAATCTGCAT...CCTGAAACAGCCATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATTTGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp TGTCCCTCACATCTGCGCATGTCAAGCCATCGGCAAGGCGTGTCACACAAAAGGGTCTTAAATGGATTTTaGTATGCCTCTTGCGTTCAT +
Preference number: 4 (lower is better)
Translates to: CPSHLRMSSHRQGVSHKRVLNGF*YASCVH
Trigger: ATGAACGCAAGAGGCATACCAAAATCCATTTAAGAC...CCTTTTGTGTGACACGCCTTGCCGATGGCTTGACATGCGCAGATGTGAGGGACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp AATGTCACAGCAGAGTCATCACAAAATAGAGGATCATCATTGGTTTGCTTGGCTGGTGGGGAAAGCAGGTaGAACGGAGGCAAAGGTGGT +
Preference number: 4 (lower is better)
Translates to: NVTAESSQNRGSSLVCLAGGESR*NGGKGG
Trigger: ACCACCTTTGCCTCCGTTCCACCTGCTTTCCCCACC...AGCCAAGCAAACCAATGATGATCCTCTATTTTGTGATGACTCTGCTGTGACATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR TCA 90 bp ATCCAATACCATGCAAATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGTCCTGGGAGCCCGACTaGGTGGCGAAGGCTTTAATA +
Preference number: 4 (lower is better)
Translates to: IQYHANQVLWIEVKNLDMSWEPD*VAKALI
Trigger: TATTAAAGCCTTCGCCACTCAGTCGGGCTCCCAGGA...CATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATTTGCATGGTATTGGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR TCA 90 bp AACCAAACAAACCATACTTTGTCACATGTGAGAGTTACAGTCGAGCAGTATTTATGGGTAAGAAGAGAGTaGAGAGGCAGCCGGGGAGGC +
Preference number: 4 (lower is better)
Translates to: NQTNHTLSHVRVTVEQYLWVRRE*RGSRGG
Trigger: GCCTCCCCGGCTGCCTCTTCACTCTCTTCTTACCCA...TAAATACTGCTCGACTGTAACTCTCACATGTGACAAAGTATGGTTTGTTTGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR GCA 90 bp CAACCAAACAAACCATACTTTGTCACATGTGAGAGTTACAGTCGAGCAGTATTTGGAGTGAGCGAAGGCTaGTGGGTACGGTTCTCCAGA +
Preference number: 4 (lower is better)
Translates to: QPNKPYFVTCESYSRAVFGVSEG*WVRFSR
Trigger: TCTGGAGAACCGTACCCAGCAGCCTTCGCTCACTCC...AAATACTGCTCGACTGTAACTCTCACATGTGACAAAGTATGGTTTGTTTGGTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp TGCAAATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGGCTGTTTCAGGTCATCTCCTCCAGTTTaGGGTAGTTGTCCATGGTGG +
Preference number: 4 (lower is better)
Translates to: CKSSPLDRGEELGHGCFRSSPPV*GSCPWW
Trigger: CCACCATGGACAACTACCCCAAACTGGAGGAGATGA...CCTGAAACAGCCATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATTTGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp AACCAAACAAACCATACTTTGTCACATGTGAGAGTTACAGTCGAGCAGTATTTAGCGCAGCCGAGTAGATaGGACTGCTGTCGTTGGACG +
Preference number: 4 (lower is better)
Translates to: NQTNHTLSHVRVTVEQYLAQPSR*DCCRWT
Trigger: CGTCCAACGACAGCAGTCCCATCTACTCGGCTGCGC...TAAATACTGCTCGACTGTAACTCTCACATGTGACAAAGTATGGTTTGTTTGGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp CAACCAAACAAACCATACTTTGTCACATGTGAGAGTTACAGTCGAGCAGTATTTCCTGGAAACCACCTTTaGTGGCAGGGTAGGCAGGAG +
Preference number: 4 (lower is better)
Translates to: QPNKPYFVTCESYSRAVFPGNHL*WQGRQE
Trigger: CTCCTGCCTACCCTGCCACCAAAGGTGGTTTCCAGG...AAATACTGCTCGACTGTAACTCTCACATGTGACAAAGTATGGTTTGTTTGGTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp AATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGGCTGTTTCAGGCAGCGATAGTCAGGGATCATaGGAACCTGGAAACCACCTT +
Preference number: 4 (lower is better)
Translates to: NQVLWIEVKNLDMAVSGSDSQGS*EPGNHL
Trigger: AAGGTGGTTTCCAGGTTCCCATGATCCCTGACTATC...GCTGCCTGAAACAGCCATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp AACCAAACAAACCATACTTTGTCACATGTGAGAGTTACAGTCGAGCAGTATTTAGTGAGCGAAGGCTGCTaGGTACGGTTCTCCAGACCC +
Preference number: 4 (lower is better)
Translates to: NQTNHTLSHVRVTVEQYLVSEGC*VRFSRP
Trigger: GGGTCTGGAGAACCGTACCCAGCAGCCTTCGCTCAC...TAAATACTGCTCGACTGTAACTCTCACATGTGACAAAGTATGGTTTGTTTGGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR GCA 90 bp CAACCAAACAAACCATACTTTGTCACATGTGAGAGTTACAGTCGAGCAGTATTTAGCGGAGACATCAATTaGATCTCGGCCTTGGCCGCT +
Preference number: 4 (lower is better)
Translates to: QPNKPYFVTCESYSRAVFSGDIN*ISALAA
Trigger: AGCGGCCAAGGCCGAGATGCAATTGATGTCTCCGCT...AAATACTGCTCGACTGTAACTCTCACATGTGACAAAGTATGGTTTGTTTGGTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp CAACCAAACAAACCATACTTTGTCACATGTGAGAGTTACAGTCGAGCAGTATTTGTGTGGATGCGGATATaGCGGGTAAGCTCATCCGAG +
Preference number: 4 (lower is better)
Translates to: QPNKPYFVTCESYSRAVFVWMRI*RVSSSE
Trigger: CTCGGATGAGCTTACCCGCCATATCCGCATCCACAC...AAATACTGCTCGACTGTAACTCTCACATGTGACAAAGTATGGTTTGTTTGGTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp AACCAAACAAACCATACTTTGTCACATGTGAGAGTTACAGTCGAGCAGTATTTAGGCTTCTGGCCTGTGTaGATGCGGATATGGCGGGTA +
Preference number: 4 (lower is better)
Translates to: NQTNHTLSHVRVTVEQYLGFWPV*MRIWRV
Trigger: TACCCGCCATATCCGCATCCACACAGGCCAGAAGCC...TAAATACTGCTCGACTGTAACTCTCACATGTGACAAAGTATGGTTTGTTTGGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp AACCAAACAAACCATACTTTGTCACATGTGAGAGTTACAGTCGAGCAGTATTTAGGTGGGGAAAGCAGGTaGAACGGAGGCAAAGGTGGT +
Preference number: 4 (lower is better)
Translates to: NQTNHTLSHVRVTVEQYLGGESR*NGGKGG
Trigger: ACCACCTTTGCCTCCGTTCCACCTGCTTTCCCCACC...TAAATACTGCTCGACTGTAACTCTCACATGTGACAAAGTATGGTTTGTTTGGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR GCA 90 bp AATGTCACAGCAGAGTCATCACAAAATAGAGGATCATCATTGGTTTGCTTGGCTAACGGGTCAGAGATCTaGAGCGGAGACATCAATTGC +
Preference number: 4 (lower is better)
Translates to: NVTAESSQNRGSSLVCLANGSEI*SGDINC
Trigger: GCAATTGATGTCTCCGCTGCAGATCTCTGACCCGTT...AGCCAAGCAAACCAATGATGATCCTCTATTTTGTGATGACTCTGCTGTGACATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR GCA 90 bp TGCAAATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGGCTGTTTCAGGTTTTGGTATGCCTCTTaGGTTCATCACTCCTGGCAA +
Preference number: 4 (lower is better)
Translates to: CKSSPLDRGEELGHGCFRFWYAS*VHHSWQ
Trigger: TTGCCAGGAGTGATGAACGCAAGAGGCATACCAAAA...CCTGAAACAGCCATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATTTGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp CAACCAAACAAACCATACTTTGTCACATGTGAGAGTTACAGTCGAGCAGTATTTGGTAGTTGTCCATGGTaGGTGAGTGAGGAAAGGAGC +
Preference number: 4 (lower is better)
Translates to: QPNKPYFVTCESYSRAVFGSCPW*VSEERS
Trigger: GCTCCTTTCCTCACTCACCCACCATGGACAACTACC...AAATACTGCTCGACTGTAACTCTCACATGTGACAAAGTATGGTTTGTTTGGTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp AACCAAACAAACCATACTTTGTCACATGTGAGAGTTACAGTCGAGCAGTATTTAGAGCCAGGAAAGGCCTaGCTTTGGGGCTCAGGAAAA +
Preference number: 4 (lower is better)
Translates to: NQTNHTLSHVRVTVEQYLEPGKA*LWGSGK
Trigger: TTTTCCTGAGCCCCAAAGCCAGGCCTTTCCTGGCTC...TAAATACTGCTCGACTGTAACTCTCACATGTGACAAAGTATGGTTTGTTTGGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp CAACCAAACAAACCATACTTTGTCACATGTGAGAGTTACAGTCGAGCAGTATTTATGCAGATTCGACACTaGAAGGGCTTCTGGCCTGTG +
Preference number: 4 (lower is better)
Translates to: QPNKPYFVTCESYSRAVFMQIRH*KGFWPV
Trigger: CACAGGCCAGAAGCCCTTCCAGTGTCGAATCTGCAT...AAATACTGCTCGACTGTAACTCTCACATGTGACAAAGTATGGTTTGTTTGGTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp TGCAAATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGGCTGTTTCAGGATGTGGGTGGTAAGGTaGTCACTACGACTGAAGTTA +
Preference number: 4 (lower is better)
Translates to: CKSSPLDRGEELGHGCFRMWVVR*SLRLKL
Trigger: TAACTTCAGTCGTAGTGACCACCTTACCACCCACAT...CCTGAAACAGCCATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATTTGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp AACCAAACAAACCATACTTTGTCACATGTGAGAGTTACAGTCGAGCAGTATTTAGAGAGGAGTAGGAAGTaGGCACAGGGGATGGGAATG +
Preference number: 4 (lower is better)
Translates to: NQTNHTLSHVRVTVEQYLERSRK*AQGMGM
Trigger: CATTCCCATCCCCTGTGCCCACTTCCTACTCCTCTC...TAAATACTGCTCGACTGTAACTCTCACATGTGACAAAGTATGGTTTGTTTGGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp AACCAAACAAACCATACTTTGTCACATGTGAGAGTTACAGTCGAGCAGTATTTATGGGGTAGTTGTCCATaGTGGGTGAGTGAGGAAAGG +
Preference number: 4 (lower is better)
Translates to: NQTNHTLSHVRVTVEQYLWGSCP*WVSEER
Trigger: CCTTTCCTCACTCACCCACCATGGACAACTACCCCA...TAAATACTGCTCGACTGTAACTCTCACATGTGACAAAGTATGGTTTGTTTGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp AATGTCACAGCAGAGTCATCACAAAATAGAGGATCATCATTGGTTTGCTTGGCTGATAGTCAGGGATCATaGGAACCTGGAAACCACCTT +
Preference number: 4 (lower is better)
Translates to: NVTAESSQNRGSSLVCLADSQGS*EPGNHL
Trigger: AAGGTGGTTTCCAGGTTCCCATGATCCCTGACTATC...AGCCAAGCAAACCAATGATGATCCTCTATTTTGTGATGACTCTGCTGTGACATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR TCA 90 bp AACCAAACAAACCATACTTTGTCACATGTGAGAGTTACAGTCGAGCAGTATTTAGGTGGTCACTACGACTaGAGTTACGCATGCAGATTC +
Preference number: 4 (lower is better)
Translates to: NQTNHTLSHVRVTVEQYLGGHYD*SYACRF
Trigger: GAATCTGCATGCGTAACTTCAGTCGTAGTGACCACC...TAAATACTGCTCGACTGTAACTCTCACATGTGACAAAGTATGGTTTGTTTGGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR GCA 90 bp AATGTCACAGCAGAGTCATCACAAAATAGAGGATCATCATTGGTTTGCTTGGCTTTTTGGTATGCCTCTTaGGTTCATCACTCCTGGCAA +
Preference number: 4 (lower is better)
Translates to: NVTAESSQNRGSSLVCLAFWYAS*VHHSWQ
Trigger: TTGCCAGGAGTGATGAACGCAAGAGGCATACCAAAA...AGCCAAGCAAACCAATGATGATCCTCTATTTTGTGATGACTCTGCTGTGACATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp AATGTCACAGCAGAGTCATCACAAAATAGAGGATCATCATTGGTTTGCTTGGCTGTCTCCCTGTTGTTGTaGAAACAGATAGTCAGGGAT +
Preference number: 4 (lower is better)
Translates to: NVTAESSQNRGSSLVCLAVSLLL*KQIVRD
Trigger: ATCCCTGACTATCTGTTTCCACAACAACAGGGAGAC...AGCCAAGCAAACCAATGATGATCCTCTATTTTGTGATGACTCTGCTGTGACATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CCA 90 bp AATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGGCTGTTTCAGGCAGCGTCTTAAATGGATTTTaGTATGCCTCTTGCGTTCAT +
Preference number: 4 (lower is better)
Translates to: NQVLWIEVKNLDMAVSGSVLNGF*YASCVH
Trigger: ATGAACGCAAGAGGCATACCAAAATCCATTTAAGAC...GCTGCCTGAAACAGCCATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
3UTR CAA 72 bp GAAATGATTTATCCAATACCATGCAAATCAAGTCCTTaGGATAGAGGTGAAGAACTTGGACATGGCTGTTTC +
Preference number: 4 (lower is better)
Translates to: EMIYPIPCKSSP*DRGEELGHGCF
Trigger: GAAACAGCCATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATTTGCATGGTATTGGATAAATCATTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR GCA 90 bp AACCAAACAAACCATACTTTGTCACATGTGAGAGTTACAGTCGAGCAGTATTTAAAATGGATTTTGGTATaGCTCTTGCGTTCATCACTC +
Preference number: 4 (lower is better)
Translates to: NQTNHTLSHVRVTVEQYLKWILV*LLRSSL
Trigger: GAGTGATGAACGCAAGAGGCATACCAAAATCCATTT...TAAATACTGCTCGACTGTAACTCTCACATGTGACAAAGTATGGTTTGTTTGGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CCA 90 bp GGACTGCTGTCGTTGGACGGCACGGCACAGCTCAGGGGCGGGCTCTaGGAGGCAGAGGAAGACGATGAAGCAGCTGGAGAAGGCGCCGAG +
Preference number: 5 (lower is better)
Translates to: GLLSLDGTAQLRGGL*EAEEDDEAAGEGAE
Trigger: CTCGGCGCCTTCTCCAGCTGCTTCATCGTCTTCCTCTGCCTCCCAGAGCCCGCCCCTGAGCTGTGCCGTGCCGTCCAACGACAGCAGTCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS GCA 90 bp CACCTTTGGTGGCAGGGTAGGCAGGAGGCGGGTACTGCAAGGCTGTaGCTGCCGAGCCAGGAAAGGCCTGGCTTTGGGGCTCAGGAAAAA +
Preference number: 5 (lower is better)
Translates to: HLWWQGRQEAGTARL*LPSQERPGFGAQEK
Trigger: TTTTTCCTGAGCCCCAAAGCCAGGCCTTTCCTGGCTCGGCAGGCACAGCCTTGCAGTACCCGCCTCCTGCCTACCCTGCCACCAAAGGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CCA 90 bp AGCGAAGGCTGCTGGGTACGGTTCTCCAGACCCTGGAAGGGCTTCTaGTCTGGGGTGCCCAGGCTCAGGTCTCCCTGTTGTTGTGGAAAC +
Preference number: 5 (lower is better)
Translates to: SEGCWVRFSRPWKGF*SGVPRLRSPCCCGN
Trigger: GTTTCCACAACAACAGGGAGACCTGAGCCTGGGCACCCCAGACCAGAAGCCCTTCCAGGGTCTGGAGAACCGTACCCAGCAGCCTTCGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS TCA 90 bp TGCCACTGTTGGGTGCGGGCTCCAGGGAGAAGCGGCCAGTATAGGTaGTGGGAGGCAACCGAGTCGTTTGGCTGGGATAACTCGTCTCCA +
Preference number: 5 (lower is better)
Translates to: CHCWVRAPGRSGQYR*WEATESFGWDNSSP
Trigger: TGGAGACGAGTTATCCCAGCCAAACGACTCGGTTGCCTCCCATCACCTATACTGGCCGCTTCTCCCTGGAGCCCGCACCCAACAGTGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CAA 90 bp TCCTACCCCCTTAAGGCTAAGGTGAGCGTGTCCCTCACATCTGCGCATGTCAAGGGCCGGTTGGGGTACTaGCGCATGCGGCTGGGTTTG +
Preference number: 5 (lower is better)
Translates to: SYPLKAKVSVSLTSAHVKGRLGY*RMRLGL
Trigger: CAAACCCAGCCGCATGCGCAAGTACCCCAACCGGCC...CTTGACATGCGCAGATGTGAGGGACACGCTCACCTTAGCCTTAAGGGGGTAGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CCA 90 bp GGAACTGGGGAGCCCCGTTGCTCAGCAGCATCATCTCCTCCAGTTTaGGGTAGTTGTCCATGGTGGGTGAGTGAGGAAAGGAGCCGAACG +
Preference number: 5 (lower is better)
Translates to: GTGEPRCSAASSPPV*GSCPWWVSEERSRT
Trigger: CGTTCGGCTCCTTTCCTCACTCACCCACCATGGACAACTACCCCAAACTGGAGGAGATGATGCTGCTGAGCAACGGGGCTCCCCAGTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CCA 90 bp GGAGGCGGGTACTGCAAGGCTGTGCCTGCCGAGCCAGGAAAGGCCTaGCTTTGGGGCTCAGGAAAAATGTCAGTGTTGGGAGTAGGAAAG +
Preference number: 5 (lower is better)
Translates to: GGGYCKAVPAEPGKA*LWGSGKMSVLGVGK
Trigger: CTTTCCTACTCCCAACACTGACATTTTTCCTGAGCCCCAAAGCCAGGCCTTTCCTGGCTCGGCAGGCACAGCCTTGCAGTACCCGCCTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CCA 90 bp GAAACAGATAGTCAGGGATCATGGGAACCTGGAAACCACCTTTGGTaGCAGGGTAGGCAGGAGGCGGGTACTGCAAGGCTGTGCCTGCCG +
Preference number: 5 (lower is better)
Translates to: ETDSQGSWEPGNHLW*QGRQEAGTARLCLP
Trigger: CGGCAGGCACAGCCTTGCAGTACCCGCCTCCTGCCTACCCTGCCACCAAAGGTGGTTTCCAGGTTCCCATGATCCCTGACTATCTGTTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CCA 90 bp AGGCTGCTGGGTACGGTTCTCCAGACCCTGGAAGGGCTTCTGGTCTaGGGTGCCCAGGCTCAGGTCTCCCTGTTGTTGTGGAAACAGATA +
Preference number: 5 (lower is better)
Translates to: RLLGTVLQTLEGLLV*GAQAQVSLLLWKQI
Trigger: TATCTGTTTCCACAACAACAGGGAGACCTGAGCCTGGGCACCCCAGACCAGAAGCCCTTCCAGGGTCTGGAGAACCGTACCCAGCAGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CAA 90 bp TGTCCCTCACATCTGCGCATGTCAAGCCATCGGCAAGGCGTGTCACACAAAAGGATGGGACTGCTGTCGTaGGACGGCACGGCACAGCTC +
Preference number: 5 (lower is better)
Translates to: CPSHLRMSSHRQGVSHKRMGLLS*DGTAQL
Trigger: GAGCTGTGCCGTGCCGTCCAACGACAGCAGTCCCAT...CCTTTTGTGTGACACGCCTTGCCGATGGCTTGACATGCGCAGATGTGAGGGACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CCA 90 bp GTGGAAACAGATAGTCAGGGATCATGGGAACCTGGAAACCACCTTTaGTGGCAGGGTAGGCAGGAGGCGGGTACTGCAAGGCTGTGCCTG +
Preference number: 5 (lower is better)
Translates to: VETDSQGSWEPGNHL*WQGRQEAGTARLCL
Trigger: CAGGCACAGCCTTGCAGTACCCGCCTCCTGCCTACCCTGCCACCAAAGGTGGTTTCCAGGTTCCCATGATCCCTGACTATCTGTTTCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CCA 90 bp GTGGCGAAGGCTTTAATAGTGGATAGTGGAGTGAGCGAAGGCTGCTaGGTACGGTTCTCCAGACCCTGGAAGGGCTTCTGGTCTGGGGTG +
Preference number: 5 (lower is better)
Translates to: VAKALIVDSGVSEGC*VRFSRPWKGFWSGV
Trigger: CACCCCAGACCAGAAGCCCTTCCAGGGTCTGGAGAACCGTACCCAGCAGCCTTCGCTCACTCCACTATCCACTATTAAAGCCTTCGCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS TCA 90 bp CAGCAGCATCATCTCCTCCAGTTTGGGGTAGTTGTCCATGGTGGGTaGGTGAGGAAAGGAGCCGAACGGGTCAGAGATCTGCAGCGGAGA +
Preference number: 5 (lower is better)
Translates to: QQHHLLQFGVVVHGG*VRKGAERVRDLQRR
Trigger: TCTCCGCTGCAGATCTCTGACCCGTTCGGCTCCTTTCCTCACTCACCCACCATGGACAACTACCCCAAACTGGAGGAGATGATGCTGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CCA 90 bp TGCTCAGCAGCATCATCTCCTCCAGTTTGGGGTAGTTGTCCATGGTaGGTGAGTGAGGAAAGGAGCCGAACGGGTCAGAGATCTGCAGCG +
Preference number: 5 (lower is better)
Translates to: CSAASSPPVWGSCPW*VSEERSRTGQRSAA
Trigger: CGCTGCAGATCTCTGACCCGTTCGGCTCCTTTCCTCACTCACCCACCATGGACAACTACCCCAAACTGGAGGAGATGATGCTGCTGAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CCA 90 bp GGCTCAGGTCTCCCTGTTGTTGTGGAAACAGATAGTCAGGGATCATaGGAACCTGGAAACCACCTTTGGTGGCAGGGTAGGCAGGAGGCG +
Preference number: 5 (lower is better)
Translates to: GSGLPVVVETDSQGS*EPGNHLWWQGRQEA
Trigger: CGCCTCCTGCCTACCCTGCCACCAAAGGTGGTTTCCAGGTTCCCATGATCCCTGACTATCTGTTTCCACAACAACAGGGAGACCTGAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CAA 90 bp GCTAAGGTGAGCGTGTCCCTCACATCTGCGCATGTCAAGCCATCGGCAAGGCGTAGGAAAGGCCTGGCTTaGGGGCTCAGGAAAAATGTC +
Preference number: 5 (lower is better)
Translates to: AKVSVSLTSAHVKPSARRRKGLA*GLRKNV
Trigger: GACATTTTTCCTGAGCCCCAAAGCCAGGCCTTTCCT...ACGCCTTGCCGATGGCTTGACATGCGCAGATGTGAGGGACACGCTCACCTTAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CCA 90 bp CGTTGCTCAGCAGCATCATCTCCTCCAGTTTGGGGTAGTTGTCCATaGTGGGTGAGTGAGGAAAGGAGCCGAACGGGTCAGAGATCTGCA +
Preference number: 5 (lower is better)
Translates to: RCSAASSPPVWGSCP*WVSEERSRTGQRSA
Trigger: TGCAGATCTCTGACCCGTTCGGCTCCTTTCCTCACTCACCCACCATGGACAACTACCCCAAACTGGAGGAGATGATGCTGCTGAGCAACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CAA 90 bp GCTAAGGTGAGCGTGTCCCTCACATCTGCGCATGTCAAGCCATCGGCAAGGCGTGCTCAGGTCTCCCTGTaGTTGTGGAAACAGATAGTC +
Preference number: 5 (lower is better)
Translates to: AKVSVSLTSAHVKPSARRAQVSL*LWKQIV
Trigger: GACTATCTGTTTCCACAACAACAGGGAGACCTGAGC...ACGCCTTGCCGATGGCTTGACATGCGCAGATGTGAGGGACACGCTCACCTTAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CAA 90 bp AATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGGCTGTTTCAGGCAGCATGGGACTGCTGTCGTaGGACGGCACGGCACAGCTC +
Preference number: 5 (lower is better)
Translates to: NQVLWIEVKNLDMAVSGSMGLLS*DGTAQL
Trigger: GAGCTGTGCCGTGCCGTCCAACGACAGCAGTCCCAT...GCTGCCTGAAACAGCCATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CAA 90 bp GCTAAGGTGAGCGTGTCCCTCACATCTGCGCATGTCAAGCCATCGGCAAGGCGTTTTGATGAGCTGGGATaGGTAGGTGGTATTAAGAGC +
Preference number: 5 (lower is better)
Translates to: AKVSVSLTSAHVKPSARRFDELG*VGGIKS
Trigger: GCTCTTAATACCACCTACCAATCCCAGCTCATCAAA...ACGCCTTGCCGATGGCTTGACATGCGCAGATGTGAGGGACACGCTCACCTTAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CCA 90 bp CCATCGCCTTCTCATTATTCAGAGCGATGTCAGAAAAGGACTCTGTaGTCAGGTGCTCATAGGGTTGTTCGCTCGGCTCCCCTTGAGGAT +
Preference number: 5 (lower is better)
Translates to: PSPSHYSERCQKRTL*SGAHRVVRSAPLED
Trigger: ATCCTCAAGGGGAGCCGAGCGAACAACCCTATGAGCACCTGACCACAGAGTCCTTTTCTGACATCGCTCTGAATAATGAGAAGGCGATGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CAA 90 bp TGCAAATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGGCTGTTTCAGGAAAGTGTTGCCACTGTaGGGTGCGGGCTCCAGGGAG +
Preference number: 5 (lower is better)
Translates to: CKSSPLDRGEELGHGCFRKVLPL*GAGSRE
Trigger: CTCCCTGGAGCCCGCACCCAACAGTGGCAACACTTT...CCTGAAACAGCCATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATTTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CAA 90 bp AATGTCACAGCAGAGTCATCACAAAATAGAGGATCATCATTGGTTTGCTTGGCTCAGCGGAGACATCAATaGCATCTCGGCCTTGGCCGC +
Preference number: 5 (lower is better)
Translates to: NVTAESSQNRGSSLVCLAQRRHQ*HLGLGR
Trigger: GCGGCCAAGGCCGAGATGCAATTGATGTCTCCGCTG...AGCCAAGCAAACCAATGATGATCCTCTATTTTGTGATGACTCTGCTGTGACATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CAA 90 bp AATGTCACAGCAGAGTCATCACAAAATAGAGGATCATCATTGGTTTGCTTGGCTAAAGTGTTGCCACTGTaGGGTGCGGGCTCCAGGGAG +
Preference number: 5 (lower is better)
Translates to: NVTAESSQNRGSSLVCLAKVLPL*GAGSRE
Trigger: CTCCCTGGAGCCCGCACCCAACAGTGGCAACACTTT...AGCCAAGCAAACCAATGATGATCCTCTATTTTGTGATGACTCTGCTGTGACATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CAA 90 bp AATGTCACAGCAGAGTCATCACAAAATAGAGGATCATCATTGGTTTGCTTGGCTTCAGGCCACAAAGTGTaGCCACTGTTGGGTGCGGGC +
Preference number: 5 (lower is better)
Translates to: NVTAESSQNRGSSLVCLASGHKV*PLLGAG
Trigger: GCCCGCACCCAACAGTGGCAACACTTTGTGGCCTGA...AGCCAAGCAAACCAATGATGATCCTCTATTTTGTGATGACTCTGCTGTGACATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CAA 90 bp AACCAAACAAACCATACTTTGTCACATGTGAGAGTTACAGTCGAGCAGTATTTAGGCCGGTTGGGGTACTaGCGCATGCGGCTGGGTTTG +
Preference number: 5 (lower is better)
Translates to: NQTNHTLSHVRVTVEQYLGRLGY*RMRLGL
Trigger: CAAACCCAGCCGCATGCGCAAGTACCCCAACCGGCC...TAAATACTGCTCGACTGTAACTCTCACATGTGACAAAGTATGGTTTGTTTGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CAA 90 bp TGCAAATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGGCTGTTTCAGGAGGAAAGGCCTGGCTTaGGGGCTCAGGAAAAATGTC +
Preference number: 5 (lower is better)
Translates to: CKSSPLDRGEELGHGCFRRKGLA*GLRKNV
Trigger: GACATTTTTCCTGAGCCCCAAAGCCAGGCCTTTCCT...CCTGAAACAGCCATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATTTGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CAA 90 bp AATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGGCTGTTTCAGGCAGCGAGGCCACCACACTTTaGTCTGCTTTCTTGTCCTTC +
Preference number: 5 (lower is better)
Translates to: NQVLWIEVKNLDMAVSGSEATTL*SAFLSF
Trigger: GAAGGACAAGAAAGCAGACAAAAGTGTGGTGGCCTC...GCTGCCTGAAACAGCCATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CAA 90 bp AACCAAACAAACCATACTTTGTCACATGTGAGAGTTACAGTCGAGCAGTATTTATCAGGCCACAAAGTGTaGCCACTGTTGGGTGCGGGC +
Preference number: 5 (lower is better)
Translates to: NQTNHTLSHVRVTVEQYLSGHKV*PLLGAG
Trigger: GCCCGCACCCAACAGTGGCAACACTTTGTGGCCTGA...TAAATACTGCTCGACTGTAACTCTCACATGTGACAAAGTATGGTTTGTTTGGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CAA 90 bp TGCAAATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGGCTGTTTCAGGGCTCAGGTCTCCCTGTaGTTGTGGAAACAGATAGTC +
Preference number: 5 (lower is better)
Translates to: CKSSPLDRGEELGHGCFRAQVSL*LWKQIV
Trigger: GACTATCTGTTTCCACAACAACAGGGAGACCTGAGC...CCTGAAACAGCCATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATTTGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CAA 90 bp TGCAAATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGGCTGTTTCAGGGAGGCCACCACACTTTaGTCTGCTTTCTTGTCCTTC +
Preference number: 5 (lower is better)
Translates to: CKSSPLDRGEELGHGCFREATTL*SAFLSF
Trigger: GAAGGACAAGAAAGCAGACAAAAGTGTGGTGGCCTC...CCTGAAACAGCCATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATTTGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS GCA 90 bp CTGCTTTCTTGTCCTTCTGTCTTAAATGGATTTTGGTATGCCTCTTaGGTTCATCACTCCTGGCAAACTTCCTCCCACAAATGTCACAGG +
Preference number: 5 (lower is better)
Translates to: LLSCPSVLNGFWYAS*VHHSWQTSSHKCHR
Trigger: CCTGTGACATTTGTGGGAGGAAGTTTGCCAGGAGTGATGAACGCAAGAGGCATACCAAAATCCATTTAAGACAGAAGGACAAGAAAGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CCA 90 bp CCACACTTTTGTCTGCTTTCTTGTCCTTCTGTCTTAAATGGATTTTaGTATGCCTCTTGCGTTCATCACTCCTGGCAAACTTCCTCCCAC +
Preference number: 5 (lower is better)
Translates to: PHFCLLSCPSVLNGF*YASCVHHSWQTSSH
Trigger: GTGGGAGGAAGTTTGCCAGGAGTGATGAACGCAAGAGGCATACCAAAATCCATTTAAGACAGAAGGACAAGAAAGCAGACAAAAGTGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CCA 90 bp GAGGCCACCACACTTTTGTCTGCTTTCTTGTCCTTCTGTCTTAAATaGATTTTGGTATGCCTCTTGCGTTCATCACTCCTGGCAAACTTC +
Preference number: 5 (lower is better)
Translates to: EATTLLSAFLSFCLK*ILVCLLRSSLLANF
Trigger: GAAGTTTGCCAGGAGTGATGAACGCAAGAGGCATACCAAAATCCATTTAAGACAGAAGGACAAGAAAGCAGACAAAAGTGTGGTGGCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CAA 90 bp ATCCAATACCATGCAAATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGCAGGTCTCCCTGTTGTaGTGGAAACAGATAGTCAGG +
Preference number: 5 (lower is better)
Translates to: IQYHANQVLWIEVKNLDMQVSLL*WKQIVR
Trigger: CCTGACTATCTGTTTCCACAACAACAGGGAGACCTG...CATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATTTGCATGGTATTGGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS GCA 90 bp CTTTTGTCTGCTTTCTTGTCCTTCTGTCTTAAATGGATTTTGGTATaGCTCTTGCGTTCATCACTCCTGGCAAACTTCCTCCCACAAATG +
Preference number: 5 (lower is better)
Translates to: LLSAFLSFCLKWILV*LLRSSLLANFLPQM
Trigger: CATTTGTGGGAGGAAGTTTGCCAGGAGTGATGAACGCAAGAGGCATACCAAAATCCATTTAAGACAGAAGGACAAGAAAGCAGACAAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CAA 90 bp CAACCAAACAAACCATACTTTGTCACATGTGAGAGTTACAGTCGAGCAGTATTTCAGGTCTCCCTGTTGTaGTGGAAACAGATAGTCAGG +
Preference number: 5 (lower is better)
Translates to: QPNKPYFVTCESYSRAVFQVSLL*WKQIVR
Trigger: CCTGACTATCTGTTTCCACAACAACAGGGAGACCTG...AAATACTGCTCGACTGTAACTCTCACATGTGACAAAGTATGGTTTGTTTGGTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CAA 90 bp ATCCAATACCATGCAAATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGATTTTGGTATGCCTCTaGCGTTCATCACTCCTGGCA +
Preference number: 5 (lower is better)
Translates to: IQYHANQVLWIEVKNLDMILVCL*RSSLLA
Trigger: TGCCAGGAGTGATGAACGCAAGAGGCATACCAAAAT...CATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATTTGCATGGTATTGGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CAA 90 bp AATCAAGTCCTTTGGATAGAGGTGAAGAACTTGGACATGGCTGTTTCAGGCAGCCTTTTGTCTGCTTTCTaGTCCTTCTGTCTTAAATGG +
Preference number: 5 (lower is better)
Translates to: NQVLWIEVKNLDMAVSGSLLSAF*SFCLKW
Trigger: CCATTTAAGACAGAAGGACAAGAAAGCAGACAAAAG...GCTGCCTGAAACAGCCATGTCCAAGTTCTTCACCTCTATCCAAAGGACTTGATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS-3UTR CAA 90 bp CAACCAAACAAACCATACTTTGTCACATGTGAGAGTTACAGTCGAGCAGTATTTTTTGATGAGCTGGGATaGGTAGGTGGTATTAAGAGC +
Preference number: 5 (lower is better)
Translates to: QPNKPYFVTCESYSRAVFFDELG*VGGIKS
Trigger: GCTCTTAATACCACCTACCAATCCCAGCTCATCAAA...AAATACTGCTCGACTGTAACTCTCACATGTGACAAAGTATGGTTTGTTTGGTTG
41% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS GCA 72 bp CCCCGCTGCTGGTGCTGCTGCTGCTATTACCGCCGCTaGCCTCTGGGGTTCCGGCAGCACCGAGGAACTGGG +
Preference number: 6 (lower is better)
Translates to: PRCWCCCCYYRR*PLGFRQHRGTG
Trigger: CCCAGTTCCTCGGTGCTGCCGGAACCCCAGAGGGCAGCGGCGGTAATAGCAGCAGCAGCACCAGCAGCGGGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CCA 72 bp AGGTGGGCGCAGCCGAGTAGATGGGACTGCTGTCGTTaGACGGCACGGCACAGCTCAGGGGCGGGCTCTGGG +
Preference number: 6 (lower is better)
Translates to: RWAQPSRWDCCR*TARHSSGAGSG
Trigger: CCCAGAGCCCGCCCCTGAGCTGTGCCGTGCCGTCCAACGACAGCAGTCCCATCTACTCGGCTGCGCCCACCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CAA 72 bp GGTCAGGTGCTCATAGGGTTGTTCGCTCGGCTCCCCTaGAGGATTGAAGGCGCTGCTGCCGCTGTTGCTGCC +
Preference number: 6 (lower is better)
Translates to: GQVLIGLFARLP*RIEGAAAAVAA
Trigger: GGCAGCAACAGCGGCAGCAGCGCCTTCAATCCTCAAGGGGAGCCGAGCGAACAACCCTATGAGCACCTGACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS TCA 72 bp TGGGTGCGGGCTCCAGGGAGAAGCGGCCAGTATAGGTaGTGGGAGGCAACCGAGTCGTTTGGCTGGGATAAC +
Preference number: 6 (lower is better)
Translates to: WVRAPGRSGQYR*WEATESFGWDN
Trigger: GTTATCCCAGCCAAACGACTCGGTTGCCTCCCATCACCTATACTGGCCGCTTCTCCCTGGAGCCCGCACCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CAA 72 bp CTGACTAGGCTGAAAAGGGGTTCAGGCCACAAAGTGTaGCCACTGTTGGGTGCGGGCTCCAGGGAGAAGCGG +
Preference number: 6 (lower is better)
Translates to: LTRLKRGSGHKV*PLLGAGSREKR
Trigger: CCGCTTCTCCCTGGAGCCCGCACCCAACAGTGGCAACACTTTGTGGCCTGAACCCCTTTTCAGCCTAGTCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CAA 90 bp CGGGTACTGCAAGGCTGTGCCTGCCGAGCCAGGAAAGGCCTGGCTTaGGGGCTCAGGAAAAATGTCAGTGTTGGGAGTAGGAAAGGTGGG +
Preference number: 6 (lower is better)
Translates to: RVLQGCACRARKGLA*GLRKNVSVGSRKGG
Trigger: CCCACCTTTCCTACTCCCAACACTGACATTTTTCCTGAGCCCCAAAGCCAGGCCTTTCCTGGCTCGGCAGGCACAGCCTTGCAGTACCCG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CAA 90 bp CAGAGCGATGTCAGAAAAGGACTCTGTGGTCAGGTGCTCATAGGGTaGTTCGCTCGGCTCCCCTTGAGGATTGAAGGCGCTGCTGCCGCT +
Preference number: 6 (lower is better)
Translates to: QSDVRKGLCGQVLIG*FARLPLRIEGAAAA
Trigger: AGCGGCAGCAGCGCCTTCAATCCTCAAGGGGAGCCGAGCGAACAACCCTATGAGCACCTGACCACAGAGTCCTTTTCTGACATCGCTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CCA 72 bp GATAGTCAGGGATCATGGGAACCTGGAAACCACCTTTaGTGGCAGGGTAGGCAGGAGGCGGGTACTGCAAGG +
Preference number: 6 (lower is better)
Translates to: DSQGSWEPGNHL*WQGRQEAGTAR
Trigger: CCTTGCAGTACCCGCCTCCTGCCTACCCTGCCACCAAAGGTGGTTTCCAGGTTCCCATGATCCCTGACTATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CAA 72 bp GCGGCCAGTATAGGTGATGGGAGGCAACCGAGTCGTTaGGCTGGGATAACTCGTCTCCACCATCGCCTTCTC +
Preference number: 6 (lower is better)
Translates to: AASIGDGRQPSR*AGITRLHHRLL
Trigger: GAGAAGGCGATGGTGGAGACGAGTTATCCCAGCCAAACGACTCGGTTGCCTCCCATCACCTATACTGGCCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CAA 72 bp GCTGGAGAAGGCGCCGAGGATGAAGAGGTCGGAGGATaGGTCATGCTCACGAGGCCACTGACTAGGCTGAAA +
Preference number: 6 (lower is better)
Translates to: AGEGAEDEEVGG*VMLTRPLTRLK
Trigger: TTTCAGCCTAGTCAGTGGCCTCGTGAGCATGACCAATCCTCCGACCTCTTCATCCTCGGCGCCTTCTCCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CAA 72 bp CAAGGCTGTGCCTGCCGAGCCAGGAAAGGCCTGGCTTaGGGGCTCAGGAAAAATGTCAGTGTTGGGAGTAGG +
Preference number: 6 (lower is better)
Translates to: QGCACRARKGLA*GLRKNVSVGSR
Trigger: CCTACTCCCAACACTGACATTTTTCCTGAGCCCCAAAGCCAGGCCTTTCCTGGCTCGGCAGGCACAGCCTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CAA 90 bp GATGAAGCAGCTGGAGAAGGCGCCGAGGATGAAGAGGTCGGAGGATaGGTCATGCTCACGAGGCCACTGACTAGGCTGAAAAGGGGTTCA +
Preference number: 6 (lower is better)
Translates to: DEAAGEGAEDEEVGG*VMLTRPLTRLKRGS
Trigger: TGAACCCCTTTTCAGCCTAGTCAGTGGCCTCGTGAGCATGACCAATCCTCCGACCTCTTCATCCTCGGCGCCTTCTCCAGCTGCTTCATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CAA 90 bp GAAGGGCTTCTGGTCTGGGGTGCCCAGGCTCAGGTCTCCCTGTTGTaGTGGAAACAGATAGTCAGGGATCATGGGAACCTGGAAACCACC +
Preference number: 6 (lower is better)
Translates to: EGLLVWGAQAQVSLL*WKQIVRDHGNLETT
Trigger: GGTGGTTTCCAGGTTCCCATGATCCCTGACTATCTGTTTCCACAACAACAGGGAGACCTGAGCCTGGGCACCCCAGACCAGAAGCCCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CAA 90 bp CTGGAAGGGCTTCTGGTCTGGGGTGCCCAGGCTCAGGTCTCCCTGTaGTTGTGGAAACAGATAGTCAGGGATCATGGGAACCTGGAAACC +
Preference number: 6 (lower is better)
Translates to: LEGLLVWGAQAQVSL*LWKQIVRDHGNLET
Trigger: GGTTTCCAGGTTCCCATGATCCCTGACTATCTGTTTCCACAACAACAGGGAGACCTGAGCCTGGGCACCCCAGACCAGAAGCCCTTCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CCA 72 bp GCAGCATCATCTCCTCCAGTTTGGGGTAGTTGTCCATaGTGGGTGAGTGAGGAAAGGAGCCGAACGGGTCAG +
Preference number: 6 (lower is better)
Translates to: AASSPPVWGSCP*WVSEERSRTGQ
Trigger: CTGACCCGTTCGGCTCCTTTCCTCACTCACCCACCATGGACAACTACCCCAAACTGGAGGAGATGATGCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CCA 72 bp GAGCCCCGTTGCTCAGCAGCATCATCTCCTCCAGTTTaGGGTAGTTGTCCATGGTGGGTGAGTGAGGAAAGG +
Preference number: 6 (lower is better)
Translates to: EPRCSAASSPPV*GSCPWWVSEER
Trigger: CCTTTCCTCACTCACCCACCATGGACAACTACCCCAAACTGGAGGAGATGATGCTGCTGAGCAACGGGGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CAA 72 bp CTGGTCTGGGGTGCCCAGGCTCAGGTCTCCCTGTTGTaGTGGAAACAGATAGTCAGGGATCATGGGAACCTG +
Preference number: 6 (lower is better)
Translates to: LVWGAQAQVSLL*WKQIVRDHGNL
Trigger: CAGGTTCCCATGATCCCTGACTATCTGTTTCCACAACAACAGGGAGACCTGAGCCTGGGCACCCCAGACCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS TCA 72 bp CATCTCCTCCAGTTTGGGGTAGTTGTCCATGGTGGGTaGGTGAGGAAAGGAGCCGAACGGGTCAGAGATCTG +
Preference number: 6 (lower is better)
Translates to: HLLQFGVVVHGG*VRKGAERVRDL
Trigger: CAGATCTCTGACCCGTTCGGCTCCTTTCCTCACTCACCCACCATGGACAACTACCCCAAACTGGAGGAGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CCA 72 bp GCATCATCTCCTCCAGTTTGGGGTAGTTGTCCATGGTaGGTGAGTGAGGAAAGGAGCCGAACGGGTCAGAGA +
Preference number: 6 (lower is better)
Translates to: ASSPPVWGSCPW*VSEERSRTGQR
Trigger: TCTCTGACCCGTTCGGCTCCTTTCCTCACTCACCCACCATGGACAACTACCCCAAACTGGAGGAGATGATGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CCA 72 bp GTCTGGGGTGCCCAGGCTCAGGTCTCCCTGTTGTTGTaGAAACAGATAGTCAGGGATCATGGGAACCTGGAA +
Preference number: 6 (lower is better)
Translates to: VWGAQAQVSLLL*KQIVRDHGNLE
Trigger: TTCCAGGTTCCCATGATCCCTGACTATCTGTTTCCACAACAACAGGGAGACCTGAGCCTGGGCACCCCAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CCA 72 bp GCTTTAATAGTGGATAGTGGAGTGAGCGAAGGCTGCTaGGTACGGTTCTCCAGACCCTGGAAGGGCTTCTGG +
Preference number: 6 (lower is better)
Translates to: ALIVDSGVSEGC*VRFSRPWKGFW
Trigger: CCAGAAGCCCTTCCAGGGTCTGGAGAACCGTACCCAGCAGCCTTCGCTCACTCCACTATCCACTATTAAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CAA 72 bp GTCAGAAAAGGACTCTGTGGTCAGGTGCTCATAGGGTaGTTCGCTCGGCTCCCCTTGAGGATTGAAGGCGCT +
Preference number: 6 (lower is better)
Translates to: VRKGLCGQVLIG*FARLPLRIEGA
Trigger: AGCGCCTTCAATCCTCAAGGGGAGCCGAGCGAACAACCCTATGAGCACCTGACCACAGAGTCCTTTTCTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CAA 72 bp CTTCTGGTCTGGGGTGCCCAGGCTCAGGTCTCCCTGTaGTTGTGGAAACAGATAGTCAGGGATCATGGGAAC +
Preference number: 6 (lower is better)
Translates to: LLVWGAQAQVSL*LWKQIVRDHGN
Trigger: GTTCCCATGATCCCTGACTATCTGTTTCCACAACAACAGGGAGACCTGAGCCTGGGCACCCCAGACCAGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CAA 90 bp CAGGGAGAAGCGGCCAGTATAGGTGATGGGAGGCAACCGAGTCGTTaGGCTGGGATAACTCGTCTCCACCATCGCCTTCTCATTATTCAG +
Preference number: 6 (lower is better)
Translates to: QGEAASIGDGRQPSR*AGITRLHHRLLIIQ
Trigger: CTGAATAATGAGAAGGCGATGGTGGAGACGAGTTATCCCAGCCAAACGACTCGGTTGCCTCCCATCACCTATACTGGCCGCTTCTCCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS GCA 72 bp AAGGCTTTAATAGTGGATAGTGGAGTGAGCGAAGGCTaGTGGGTACGGTTCTCCAGACCCTGGAAGGGCTTC +
Preference number: 6 (lower is better)
Translates to: KALIVDSGVSEG*WVRFSRPWKGF
Trigger: GAAGCCCTTCCAGGGTCTGGAGAACCGTACCCAGCAGCCTTCGCTCACTCCACTATCCACTATTAAAGCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CCA 72 bp CTCCCTGTTGTTGTGGAAACAGATAGTCAGGGATCATaGGAACCTGGAAACCACCTTTGGTGGCAGGGTAGG +
Preference number: 6 (lower is better)
Translates to: LPVVVETDSQGS*EPGNHLWWQGR
Trigger: CCTACCCTGCCACCAAAGGTGGTTTCCAGGTTCCCATGATCCCTGACTATCTGTTTCCACAACAACAGGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS TCA 72 bp GTGGTATTAAGAGCCTTTAAGTCCTGGGAGCCCGACTaGGTGGCGAAGGCTTTAATAGTGGATAGTGGAGTG +
Preference number: 6 (lower is better)
Translates to: VVLRAFKSWEPD*VAKALIVDSGV
Trigger: CACTCCACTATCCACTATTAAAGCCTTCGCCACTCAGTCGGGCTCCCAGGACTTAAAGGCTCTTAATACCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CCA 72 bp AATGGATTTTGGTATGCCTCTTGCGTTCATCACTCCTaGCAAACTTCCTCCCACAAATGTCACAGGCAAAAG +
Preference number: 6 (lower is better)
Translates to: NGFWYASCVHHS*QTSSHKCHRQK
Trigger: CTTTTGCCTGTGACATTTGTGGGAGGAAGTTTGCCAGGAGTGATGAACGCAAGAGGCATACCAAAATCCATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CAA 90 bp TCTGCTTTCTTGTCCTTCTGTCTTAAATGGATTTTGGTATGCCTCTaGCGTTCATCACTCCTGGCAAACTTCCTCCCACAAATGTCACAG +
Preference number: 6 (lower is better)
Translates to: SAFLSFCLKWILVCL*RSSLLANFLPQMSQ
Trigger: CTGTGACATTTGTGGGAGGAAGTTTGCCAGGAGTGATGAACGCAAGAGGCATACCAAAATCCATTTAAGACAGAAGGACAAGAAAGCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CAA 90 bp ACCACACTTTTGTCTGCTTTCTTGTCCTTCTGTCTTAAATGGATTTaGGTATGCCTCTTGCGTTCATCACTCCTGGCAAACTTCCTCCCA +
Preference number: 6 (lower is better)
Translates to: TTLLSAFLSFCLKWI*VCLLRSSLLANFLP
Trigger: TGGGAGGAAGTTTGCCAGGAGTGATGAACGCAAGAGGCATACCAAAATCCATTTAAGACAGAAGGACAAGAAAGCAGACAAAAGTGTGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS GCA 72 bp TGTCCTTCTGTCTTAAATGGATTTTGGTATGCCTCTTaGGTTCATCACTCCTGGCAAACTTCCTCCCACAAA +
Preference number: 6 (lower is better)
Translates to: CPSVLNGFWYAS*VHHSWQTSSHK
Trigger: TTTGTGGGAGGAAGTTTGCCAGGAGTGATGAACGCAAGAGGCATACCAAAATCCATTTAAGACAGAAGGACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS GCA 72 bp GCTTTCTTGTCCTTCTGTCTTAAATGGATTTTGGTATaGCTCTTGCGTTCATCACTCCTGGCAAACTTCCTC +
Preference number: 6 (lower is better)
Translates to: AFLSFCLKWILV*LLRSSLLANFL
Trigger: GAGGAAGTTTGCCAGGAGTGATGAACGCAAGAGGCATACCAAAATCCATTTAAGACAGAAGGACAAGAAAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2
CDS CAA 72 bp TTGTCCTTCTGTCTTAAATGGATTTTGGTATGCCTCTaGCGTTCATCACTCCTGGCAAACTTCCTCCCACAA +
Preference number: 6 (lower is better)
Translates to: LSFCLKWILVCL*RSSLLANFLPQ
Trigger: TTGTGGGAGGAAGTTTGCCAGGAGTGATGAACGCAAGAGGCATACCAAAATCCATTTAAGACAGAAGGACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064795.6
ENSMUST00000165033.2