RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for EFTUD2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020929

Ensembl transcript IDs: ENSMUST00000021306.14, ENSMUST00000107060.8, ENSMUST00000132543.2, ENSMUST00000138483.8, ENSMUST00000172611.2, ENSMUST00000173679.8

Found 323 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ATGGAGGTTTCTGGGGCGTTCAGACGGCCCCATAGCAGTTCCCGATaGTCAGAGCTCGAGGGCCCAGTCACCAGGTCTCGGCTTGAGTCT +
Preference number: 1 (lower is better)
Translates to: MEVSGAFRRPHSSSR*SELEGPVTRSRLES
Trigger: AGACTCAAGCCGAGACCTGGTGACTGGGCCCTCGAGCTCTGAGCATCGGGAACTGCTATGGGGCCGTCTGAACGCCCCAGAAACCTCCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
3UTR TCA 90 bp AGGCCCTTCCTACGACGGGTTTTGATCATGAACTCCCGAGCCAGGTaGGGAGCTGGCTGTGGCTCCAGCGGGCGAATGACAATGCTCTTG +
Preference number: 1 (lower is better)
Translates to: RPFLRRVLIMNSRAR*GAGCGSSGRMTMLL
Trigger: CAAGAGCATTGTCATTCGCCCGCTGGAGCCACAGCCAGCTCCTCACCTGGCTCGGGAGTTCATGATCAAAACCCGTCGTAGGAAGGGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132543.2
3UTR CCA 90 bp CCTACGACGGGTTTTGATCATGAACTCCCGAGCCAGGTGAGGAGCTaGCTGTGGCTCCAGCGGGCGAATGACAATGCTCTTGTCCAGAGG +
Preference number: 1 (lower is better)
Translates to: PTTGFDHELPSQVRS*LWLQRANDNALVQR
Trigger: CCTCTGGACAAGAGCATTGTCATTCGCCCGCTGGAGCCACAGCCAGCTCCTCACCTGGCTCGGGAGTTCATGATCAAAACCCGTCGTAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132543.2
3UTR TCA 90 bp TGCCAATGGTGGAAGACAGACAGGGAAAAGGCCTGTCCCTGGGTGTaGGTGCGGAGATCAGTCTCAAAGCCGAATGAGTCGATGGCCGGG +
Preference number: 1 (lower is better)
Translates to: CQWWKTDREKACPWV*VRRSVSKPNESMAG
Trigger: CCCGGCCATCGACTCATTCGGCTTTGAGACTGATCTCCGCACTCACACCCAGGGACAGGCCTTTTCCCTGTCTGTCTTCCACCATTGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132543.2
3UTR TCA 90 bp GGCCTGTCCCTGGGTGTGAGTGCGGAGATCAGTCTCAAAGCCGAATaGGTCGATGGCCGGGATGAACGCTTTGATGGTATAGAGAGGGGA +
Preference number: 1 (lower is better)
Translates to: GLSLGVSAEISLKAE*VDGRDERFDGIERG
Trigger: TCCCCTCTCTATACCATCAAAGCGTTCATCCCGGCCATCGACTCATTCGGCTTTGAGACTGATCTCCGCACTCACACCCAGGGACAGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132543.2
3UTR CCA 90 bp TCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATaGGGCCAGGCAAAGGCCACAGAAGAAACCAGGCCAGATGCCCCT +
Preference number: 1 (lower is better)
Translates to: SFFFSGPKLSSVPWE*GQAKATEETRPDAP
Trigger: AGGGGCATCTGGCCTGGTTTCTTCTGTGGCCTTTGCCTGGCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
3UTR GCA 90 bp AGCCGGTCGATTTTGTTGATACACACGGTGACTGCTAACCTTTCCTaGACTGCGTGCTTGATCAGCCGCTCTGTGTTCAGCATCACCCCC +
Preference number: 1 (lower is better)
Translates to: SRSILLIHTVTANLS*TACLISRSVFSITP
Trigger: GGGGGTGATGCTGAACACAGAGCGGCTGATCAAGCACGCAGTGCAGGAAAGGTTAGCAGTCACCGTGTGTATCAACAAAATCGACCGGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138483.8
3UTR GCA 90 bp ATTTTGTTGATACACACGGTGACTGCTAACCTTTCCTGCACTGCGTaGTTGATCAGCCGCTCTGTGTTCAGCATCACCCCCTCAGCAGCA +
Preference number: 1 (lower is better)
Translates to: ILLIHTVTANLSCTA*LISRSVFSITPSAA
Trigger: TGCTGCTGAGGGGGTGATGCTGAACACAGAGCGGCTGATCAAGCACGCAGTGCAGGAAAGGTTAGCAGTCACCGTGTGTATCAACAAAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000138483.8
3UTR CCA 90 bp ATTGACCTCATCCACAATGTGTCGCAGCTTGTAATAAGCATCTGTTaGAGGCAGCTTCAGCTCCAAGATCAGCCGGTCGATTTTGTTGAT +
Preference number: 1 (lower is better)
Translates to: IDLIHNVSQLVISIC*RQLQLQDQPVDFVD
Trigger: ATCAACAAAATCGACCGGCTGATCTTGGAGCTGAAGCTGCCTCCAACAGATGCTTATTACAAGCTGCGACACATTGTGGATGAGGTCAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138483.8
3UTR-3UTR GCA 90 bp CATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCCAGGCATAGCAGTTCCCGATaGTCAGAGCTCGAGGGCCCA +
Preference number: 2 (lower is better)
Translates to: HSSSLGPSSPLFLGNGARHSSSR*SELEGP
Trigger: TGGGCCCTCGAGCTCTGAGCATCGGGAACTGCTATG...CCTGGCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
3UTR-3UTR GCA 90 bp TTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCCAGGCAAAGCATAGCAGTTCCCGATaGTCAGAGCTCGAGGGCCCA +
Preference number: 2 (lower is better)
Translates to: FFSGPKLSSVPWEWGQAKHSSSR*SELEGP
Trigger: TGGGCCCTCGAGCTCTGAGCATCGGGAACTGCTATG...CTTTGCCTGGCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
3UTR-3UTR TCA 90 bp ATGCTCTTGTCCAGAGGATCGCCTGGGACAATCTGCCAATGGTGGAAGACAGACGCCTGTCCCTGGGTGTaGGTGCGGAGATCAGTCTCA +
Preference number: 2 (lower is better)
Translates to: MLLSRGSPGTICQWWKTDACPWV*VRRSVS
Trigger: TGAGACTGATCTCCGCACTCACACCCAGGGACAGGC...GTCTGTCTTCCACCATTGGCAGATTGTCCCAGGCGATCCTCTGGACAAGAGCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132543.2
3UTR-3UTR GCA 90 bp TTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCAGAAACCAGGCCAGATaGCCCTTCCTCACTGGGATG +
Preference number: 2 (lower is better)
Translates to: FSFFFSGPKLSSVPWEWGRNQAR*PFLTGM
Trigger: CATCCCAGTGAGGAAGGGGCATCTGGCCTGGTTTCT...GCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
3UTR CAA 90 bp TTGTTGATACACACGGTGACTGCTAACCTTTCCTGCACTGCGTGCTaGATCAGCCGCTCTGTGTTCAGCATCACCCCCTCAGCAGCATCA +
Preference number: 2 (lower is better)
Translates to: LLIHTVTANLSCTAC*ISRSVFSITPSAAS
Trigger: TGATGCTGCTGAGGGGGTGATGCTGAACACAGAGCGGCTGATCAAGCACGCAGTGCAGGAAAGGTTAGCAGTCACCGTGTGTATCAACAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000138483.8
3UTR CAA 90 bp GCATCTGTTGGAGGCAGCTTCAGCTCCAAGATCAGCCGGTCGATTTaGTTGATACACACGGTGACTGCTAACCTTTCCTGCACTGCGTGC +
Preference number: 2 (lower is better)
Translates to: ASVGGSFSSKISRSI*LIHTVTANLSCTAC
Trigger: GCACGCAGTGCAGGAAAGGTTAGCAGTCACCGTGTGTATCAACAAAATCGACCGGCTGATCTTGGAGCTGAAGCTGCCTCCAACAGATGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138483.8
3UTR-3UTR TCA 90 bp GTCGAAGAACTTGCTGATGCTCACATCTTCACTCAGGCCCTTCCTACGACGGGTAGTCTCAAAGCCGAATaGGTCGATGGCCGGGATGAA +
Preference number: 2 (lower is better)
Translates to: VEELADAHIFTQALPTTGSLKAE*VDGRDE
Trigger: TTCATCCCGGCCATCGACTCATTCGGCTTTGAGACT...ACCCGTCGTAGGAAGGGCCTGAGTGAAGATGTGAGCATCAGCAAGTTCTTCGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132543.2
3UTR-3UTR TCA 90 bp CGCTCTGTGTTCAGCATCACCCCCTCAGCAGCATCAATGAAAAGGACCACTCCACCATCTCATACACCGTaGCGGGTAATGTCTGCTCCA +
Preference number: 2 (lower is better)
Translates to: RSVFSITPSAASMKRTTPPSHTP*RVMSAP
Trigger: TGGAGCAGACATTACCCGTCACGGTGTATGAGATGG...TGGAGTGGTCCTTTTCATTGATGCTGCTGAGGGGGTGATGCTGAACACAGAGCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000138483.8
3UTR-3UTR GCA 90 bp TGGAGGCAGCTTCAGCTCCAAGATCAGCCGGTCGATTTTGTTGATACACACGGTCTACGAAACAGGTCTTaGCGTGGTGGAGATGGCCAC +
Preference number: 2 (lower is better)
Translates to: WRQLQLQDQPVDFVDTHGLRNRS*RGGDGH
Trigger: GTGGCCATCTCCACCACGGCAAGACCTGTTTCGTAG...ACCGTGTGTATCAACAAAATCGACCGGCTGATCTTGGAGCTGAAGCTGCCTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138483.8
3UTR CAA 90 bp TCTGTTGGAGGCAGCTTCAGCTCCAAGATCAGCCGGTCGATTTTGTaGATACACACGGTGACTGCTAACCTTTCCTGCACTGCGTGCTTG +
Preference number: 2 (lower is better)
Translates to: SVGGSFSSKISRSIL*IHTVTANLSCTACL
Trigger: CAAGCACGCAGTGCAGGAAAGGTTAGCAGTCACCGTGTGTATCAACAAAATCGACCGGCTGATCTTGGAGCTGAAGCTGCCTCCAACAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138483.8
3UTR-3UTR TCA 90 bp CCACAATGTGTCGCAGCTTGTAATAAGCATCTGTTGGAGGCAGCTTCAGCTCCAAAGGACCACTCCATCTaGGATGCGCAAGCCAGCTGT +
Preference number: 2 (lower is better)
Translates to: PQCVAACNKHLLEAASAPKDHSI*DAQASC
Trigger: ACAGCTGGCTTGCGCATCTCAGATGGAGTGGTCCTT...TGGAGCTGAAGCTGCCTCCAACAGATGCTTATTACAAGCTGCGACACATTGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138483.8
3UTR-3UTR GCA 90 bp AATGACAATGCTCTTGTCCAGAGGATCGCCTGGGACAATCTGCCAATGGTGGAAGTCCCTGGGTGTGAGTaGGGAGATCAGTCTCAAAGC +
Preference number: 2 (lower is better)
Translates to: NDNALVQRIAWDNLPMVEVPGCE*GDQSQS
Trigger: GCTTTGAGACTGATCTCCGCACTCACACCCAGGGAC...TTCCACCATTGGCAGATTGTCCCAGGCGATCCTCTGGACAAGAGCATTGTCATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132543.2
3UTR-3UTR TCA 90 bp CGCTCTGTGTTCAGCATCACCCCCTCAGCAGCATCAATGAAAAGGACCACTCCATCAGAAAAATTCACATaGCCTGGCGTGTCCATGATG +
Preference number: 2 (lower is better)
Translates to: RSVFSITPSAASMKRTTPSEKFT*PGVSMM
Trigger: CATCATGGACACGCCAGGTCATGTGAATTTTTCTGA...TGGAGTGGTCCTTTTCATTGATGCTGCTGAGGGGGTGATGCTGAACACAGAGCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000138483.8
3UTR-3UTR TCA 90 bp AATAAGCATCTGTTGGAGGCAGCTTCAGCTCCAAGATCAGCCGGTCGATTTTGTGGTCATAGCGCTTTCTaGTTTCCGGATGCGTCTGTT +
Preference number: 2 (lower is better)
Translates to: NKHLLEAASAPRSAGRFCGHSAF*FPDASV
Trigger: AACAGACGCATCCGGAAATCAGAAAGCGCTATGACC...ACAAAATCGACCGGCTGATCTTGGAGCTGAAGCTGCCTCCAACAGATGCTTATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138483.8
3UTR CAA 90 bp TGGTGGAGATGGCCACACAAGGTTACGTTTCTGATGAGCTCAGAGTaGTCCATCAGATCTGCTAAGAAATCCATCTCATACACCGTGACG +
Preference number: 2 (lower is better)
Translates to: WWRWPHKVTFLMSSE*SIRSAKKSISYTVT
Trigger: CGTCACGGTGTATGAGATGGATTTCTTAGCAGATCTGATGGACAACTCTGAGCTCATCAGAAACGTAACCTTGTGTGGCCATCTCCACCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138483.8
3UTR-3UTR GCA 90 bp AATAAGCATCTGTTGGAGGCAGCTTCAGCTCCAAGATCAGCCGGTCGATTTTGTGTGACGGGTAATGTCTaGTCCATCAGAGTGAATTTC +
Preference number: 2 (lower is better)
Translates to: NKHLLEAASAPRSAGRFCVTGNV*SIRVNF
Trigger: GAAATTCACTCTGATGGAGCAGACATTACCCGTCAC...ACAAAATCGACCGGCTGATCTTGGAGCTGAAGCTGCCTCCAACAGATGCTTATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138483.8
3UTR-3UTR GCA 90 bp TGGAGGCAGCTTCAGCTCCAAGATCAGCCGGTCGATTTTGTTGATACACACGGTTTTCTGATTTCCGGATaGGTCTGTTCTATTAAACAA +
Preference number: 2 (lower is better)
Translates to: WRQLQLQDQPVDFVDTHGFLISG*VCSIKQ
Trigger: TTGTTTAATAGAACAGACGCATCCGGAAATCAGAAA...ACCGTGTGTATCAACAAAATCGACCGGCTGATCTTGGAGCTGAAGCTGCCTCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000138483.8
3UTR GCA 72 bp TCTGGGGCGTTCAGACGGCCCCATAGCAGTTCCCGATaGTCAGAGCTCGAGGGCCCAGTCACCAGGTCTCGG +
Preference number: 3 (lower is better)
Translates to: SGAFRRPHSSSR*SELEGPVTRSR
Trigger: CCGAGACCTGGTGACTGGGCCCTCGAGCTCTGAGCATCGGGAACTGCTATGGGGCCGTCTGAACGCCCCAGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
3UTR TCA 72 bp CTACGACGGGTTTTGATCATGAACTCCCGAGCCAGGTaGGGAGCTGGCTGTGGCTCCAGCGGGCGAATGACA +
Preference number: 3 (lower is better)
Translates to: LRRVLIMNSRAR*GAGCGSSGRMT
Trigger: TGTCATTCGCCCGCTGGAGCCACAGCCAGCTCCTCACCTGGCTCGGGAGTTCATGATCAAAACCCGTCGTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132543.2
3UTR GCA 72 bp ATACACACGGTGACTGCTAACCTTTCCTGCACTGCGTaGTTGATCAGCCGCTCTGTGTTCAGCATCACCCCC +
Preference number: 3 (lower is better)
Translates to: IHTVTANLSCTA*LISRSVFSITP
Trigger: GGGGGTGATGCTGAACACAGAGCGGCTGATCAAGCACGCAGTGCAGGAAAGGTTAGCAGTCACCGTGTGTAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138483.8
3UTR TCA 72 bp CTGGGTGTGAGTGCGGAGATCAGTCTCAAAGCCGAATaGGTCGATGGCCGGGATGAACGCTTTGATGGTATA +
Preference number: 3 (lower is better)
Translates to: LGVSAEISLKAE*VDGRDERFDGI
Trigger: TATACCATCAAAGCGTTCATCCCGGCCATCGACTCATTCGGCTTTGAGACTGATCTCCGCACTCACACCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132543.2
3UTR TCA 72 bp CCCCTCAGCAGCATCAATGAAAAGGACCACTCCATCTaGGATGCGCAAGCCAGCTGTGACCTCATCAGAAAA +
Preference number: 3 (lower is better)
Translates to: PLSSINEKDHSI*DAQASCDLIRK
Trigger: TTTTCTGATGAGGTCACAGCTGGCTTGCGCATCTCAGATGGAGTGGTCCTTTTCATTGATGCTGCTGAGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000138483.8
3UTR TCA 72 bp AAAGGACCACTCCATCTGAGATGCGCAAGCCAGCTGTaGCCTCATCAGAAAAATTCACATGACCTGGCGTGT +
Preference number: 3 (lower is better)
Translates to: KGPLHLRCASQL*PHQKNSHDLAC
Trigger: ACACGCCAGGTCATGTGAATTTTTCTGATGAGGTCACAGCTGGCTTGCGCATCTCAGATGGAGTGGTCCTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000138483.8
3UTR GCA 72 bp ATTTTGTTGATACACACGGTGACTGCTAACCTTTCCTaGACTGCGTGCTTGATCAGCCGCTCTGTGTTCAGC +
Preference number: 3 (lower is better)
Translates to: ILLIHTVTANLS*TACLISRSVFS
Trigger: GCTGAACACAGAGCGGCTGATCAAGCACGCAGTGCAGGAAAGGTTAGCAGTCACCGTGTGTATCAACAAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138483.8
3UTR CCA 72 bp ATCCACAATGTGTCGCAGCTTGTAATAAGCATCTGTTaGAGGCAGCTTCAGCTCCAAGATCAGCCGGTCGAT +
Preference number: 3 (lower is better)
Translates to: IHNVSQLVISIC*RQLQLQDQPVD
Trigger: ATCGACCGGCTGATCTTGGAGCTGAAGCTGCCTCCAACAGATGCTTATTACAAGCTGCGACACATTGTGGAT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138483.8
3UTR CCA 72 bp TCTATTAAACAATCTACGAAACAGGTCTTGCCGTGGTaGAGATGGCCACACAAGGTTACGTTTCTGATGAGC +
Preference number: 3 (lower is better)
Translates to: SIKQSTKQVLPW*RWPHKVTFLMS
Trigger: GCTCATCAGAAACGTAACCTTGTGTGGCCATCTCCACCACGGCAAGACCTGTTTCGTAGATTGTTTAATAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138483.8
3UTR CCA 72 bp TGTTCTATTAAACAATCTACGAAACAGGTCTTGCCGTaGTGGAGATGGCCACACAAGGTTACGTTTCTGATG +
Preference number: 3 (lower is better)
Translates to: CSIKQSTKQVLP*WRWPHKVTFLM
Trigger: CATCAGAAACGTAACCTTGTGTGGCCATCTCCACCACGGCAAGACCTGTTTCGTAGATTGTTTAATAGAACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138483.8
3UTR TCA 72 bp TGTCAGTATAGCATAGGTCTTGGTCATAGCGCTTTCTaGTTTCCGGATGCGTCTGTTCTATTAAACAATCTA +
Preference number: 3 (lower is better)
Translates to: CQYSIGLGHSAF*FPDASVLLNNL
Trigger: TAGATTGTTTAATAGAACAGACGCATCCGGAAATCAGAAAGCGCTATGACCAAGACCTATGCTATACTGACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138483.8
CDS-3UTR CCA 90 bp GCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCACAGGCTGCCCAGCGTaGATGGTGCCGCTCAGCACC +
Preference number: 4 (lower is better)
Translates to: ARCPFLTGMEVSGAFRRPTGCPA*MVPLST
Trigger: GGTGCTGAGCGGCACCATCCACGCTGGGCAGCCTGT...GGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp TCGAGGGCCCAGTCACCAGGTCTCGGCTTGAGTCTAGAGCTGCCAGCCCCTTCAAACTCCCGAGCCAGGTaGGGAGCTGGCTGTGGCTCC +
Preference number: 4 (lower is better)
Translates to: SRAQSPGLGLSLELPAPSNSRAR*GAGCGS
Trigger: GGAGCCACAGCCAGCTCCTCACCTGGCTCGGGAGTT...TGAAGGGGCTGGCAGCTCTAGACTCAAGCCGAGACCTGGTGACTGGGCCCTCGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR GCA 90 bp TCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCCATAGCAGTTCCCGATGCCCAGCGTGGATGGTaGCGCTCAGCACCCGGCCGA +
Preference number: 4 (lower is better)
Translates to: SLGWRFLGRSDGPIAVPDAQRGW*RSAPGR
Trigger: TCGGCCGGGTGCTGAGCGGCACCATCCACGCTGGGC...ATCGGGAACTGCTATGGGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR GCA 90 bp GAAACCAGGCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGCCCAGCGTGGATGGTaGCGCTCAGCACCCGGCCGA +
Preference number: 4 (lower is better)
Translates to: ETRPDAPSSLGWRFLGRSAQRGW*RSAPGR
Trigger: TCGGCCGGGTGCTGAGCGGCACCATCCACGCTGGGC...TGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGCCTGGTTTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp AAACCAGGCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGGCTGCCCAGCGTGGATaGTGCCGCTCAGCACCCGGC +
Preference number: 4 (lower is better)
Translates to: KPGQMPLPHWDGGFWGVQAAQRG*CRSAPG
Trigger: GCCGGGTGCTGAGCGGCACCATCCACGCTGGGCAGC...CTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGCCTGGTTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp TCGAGGGCCCAGTCACCAGGTCTCGGCTTGAGTCTAGAGCTGCCAGCCCCTTCATCCTGGCTGTGGGAATaGTCTGACCTCCACCCCGGT +
Preference number: 4 (lower is better)
Translates to: SRAQSPGLGLSLELPAPSSWLWE*SDLHPG
Trigger: ACCGGGGTGGAGGTCAGATCATTCCCACAGCCAGGA...TGAAGGGGCTGGCAGCTCTAGACTCAAGCCGAGACCTGGTGACTGGGCCCTCGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp GAAACCAGGCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAAACTCCCGAGCCAGGTaGGGAGCTGGCTGTGGCTCC +
Preference number: 4 (lower is better)
Translates to: ETRPDAPSSLGWRFLGRSNSRAR*GAGCGS
Trigger: GGAGCCACAGCCAGCTCCTCACCTGGCTCGGGAGTT...TGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGCCTGGTTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp AAACCAGGCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGACAGGCTGCCCAGCGTaGATGGTGCCGCTCAGCACC +
Preference number: 4 (lower is better)
Translates to: KPGQMPLPHWDGGFWGVQTGCPA*MVPLST
Trigger: GGTGCTGAGCGGCACCATCCACGCTGGGCAGCCTGT...CTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGCCTGGTTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp TCGAGGGCCCAGTCACCAGGTCTCGGCTTGAGTCTAGAGCTGCCAGCCCCTTCAAAGGGCCGGAAAATCTaGGCCTCCTCATTGCCTCGG +
Preference number: 4 (lower is better)
Translates to: SRAQSPGLGLSLELPAPSKGRKI*ASSLPR
Trigger: CCGAGGCAATGAGGAGGCTCAGATTTTCCGGCCCTT...TGAAGGGGCTGGCAGCTCTAGACTCAAGCCGAGACCTGGTGACTGGGCCCTCGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR GCA 90 bp TCGAGGGCCCAGTCACCAGGTCTCGGCTTGAGTCTAGAGCTGCCAGCCCCTTCAAGAGGCGGCCCACGGTaGAGATCTGGGAATCTTCCT +
Preference number: 4 (lower is better)
Translates to: SRAQSPGLGLSLELPAPSRGGPR*RSGNLP
Trigger: AGGAAGATTCCCAGATCTGCACCGTGGGCCGCCTCT...TGAAGGGGCTGGCAGCTCTAGACTCAAGCCGAGACCTGGTGACTGGGCCCTCGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR GCA 90 bp CTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCCAGGCAAAGGCGGTAGAGCTCCCCAGTaGCCAGGATCACATGCTCGC +
Preference number: 4 (lower is better)
Translates to: LLWAQALLCSLGMGPGKGGRAPQ*PGSHAR
Trigger: GCGAGCATGTGATCCTGGGCACTGGGGAGCTCTACC...GCCTTTGCCTGGCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp TCGAGGGCCCAGTCACCAGGTCTCGGCTTGAGTCTAGAGCTGCCAGCCCCTTCAGGTCACAGTCGCTCATaGCCTCGCCAAGGTCAGAGT +
Preference number: 4 (lower is better)
Translates to: SRAQSPGLGLSLELPAPSGHSRS*PRQGQS
Trigger: ACTCTGACCTTGGCGAGGCCATGAGCGACTGTGACC...TGAAGGGGCTGGCAGCTCTAGACTCAAGCCGAGACCTGGTGACTGGGCCCTCGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp GCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCCAAAGGAACCCAGTGTaGAGCAGATGCTGTACTGGG +
Preference number: 4 (lower is better)
Translates to: ARCPFLTGMEVSGAFRRPQRNPV*SRCCTG
Trigger: CCCAGTACAGCATCTGCTTCACACTGGGTTCCTTTG...GGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp TCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCCATAGCAGTTCCCGATGCCTGTCCCTGGGTGTaGGTGCGGAGATCAGTCTCA +
Preference number: 4 (lower is better)
Translates to: SLGWRFLGRSDGPIAVPDACPWV*VRRSVS
Trigger: TGAGACTGATCTCCGCACTCACACCCAGGGACAGGC...ATCGGGAACTGCTATGGGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR GCA 90 bp AAACCAGGCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGGGGTGGTCATCCTCGTaGTCTCCCACGTCATCCTCG +
Preference number: 4 (lower is better)
Translates to: KPGQMPLPHWDGGFWGVQGWSSS*SPTSSS
Trigger: CGAGGATGACGTGGGAGAGCACGAGGATGACCACCC...CTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGCCTGGTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR GCA 90 bp CCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCCATAGCAGTAGAGGCGGCCCACGGTaGAGATCTGGGAATCTTCCT +
Preference number: 4 (lower is better)
Translates to: PFLTGMEVSGAFRRPHSSRGGPR*RSGNLP
Trigger: AGGAAGATTCCCAGATCTGCACCGTGGGCCGCCTCT...ACTGCTATGGGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR GCA 90 bp TCGAGGGCCCAGTCACCAGGTCTCGGCTTGAGTCTAGAGCTGCCAGCCCCTTCAGTCCCTGGGTGTGAGTaGGGAGATCAGTCTCAAAGC +
Preference number: 4 (lower is better)
Translates to: SRAQSPGLGLSLELPAPSVPGCE*GDQSQS
Trigger: GCTTTGAGACTGATCTCCGCACTCACACCCAGGGAC...TGAAGGGGCTGGCAGCTCTAGACTCAAGCCGAGACCTGGTGACTGGGCCCTCGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp GCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCATAGAGAGGGGAGCCTaGTATGGGTGCATCCTGAGT +
Preference number: 4 (lower is better)
Translates to: ARCPFLTGMEVSGAFRRPIERGA*YGCILS
Trigger: ACTCAGGATGCACCCATACCAGGCTCCCCTCTCTAT...GGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp TTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCCAGGCAAAGGTGAGGAGCTGGCTGTaGCTCCAGCGGGCGAATGAC +
Preference number: 4 (lower is better)
Translates to: FFSGPKLSSVPWEWGQAKVRSWL*LQRAND
Trigger: GTCATTCGCCCGCTGGAGCCACAGCCAGCTCCTCAC...CTTTGCCTGGCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
3UTR CAA 72 bp GCTGGCTGTGGCTCCAGCGGGCGAATGACAATGCTCTaGTCCAGAGGATCGCCTGGGACAATCTGCCAATGG +
Preference number: 4 (lower is better)
Translates to: AGCGSSGRMTML*SRGSPGTICQW
Trigger: CCATTGGCAGATTGTCCCAGGCGATCCTCTGGACAAGAGCATTGTCATTCGCCCGCTGGAGCCACAGCCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132543.2
CDS-3UTR TCA 90 bp TCGAGGGCCCAGTCACCAGGTCTCGGCTTGAGTCTAGAGCTGCCAGCCCCTTCACCATCTCATACACCGTaGCGGGTAATGTCTGCTCCA +
Preference number: 4 (lower is better)
Translates to: SRAQSPGLGLSLELPAPSPSHTP*RVMSAP
Trigger: TGGAGCAGACATTACCCGTCACGGTGTATGAGATGG...TGAAGGGGCTGGCAGCTCTAGACTCAAGCCGAGACCTGGTGACTGGGCCCTCGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp CTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCCAGGCAAAGGCAAGGACCACTCCATCTaGGATGCGCAAGCCAGCTGT +
Preference number: 4 (lower is better)
Translates to: LLWAQALLCSLGMGPGKGKDHSI*DAQASC
Trigger: ACAGCTGGCTTGCGCATCTCAGATGGAGTGGTCCTT...GCCTTTGCCTGGCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp TCGAGGGCCCAGTCACCAGGTCTCGGCTTGAGTCTAGAGCTGCCAGCCCCTTCACAAAGGAACCCAGTGTaGAGCAGATGCTGTACTGGG +
Preference number: 4 (lower is better)
Translates to: SRAQSPGLGLSLELPAPSQRNPV*SRCCTG
Trigger: CCCAGTACAGCATCTGCTTCACACTGGGTTCCTTTG...TGAAGGGGCTGGCAGCTCTAGACTCAAGCCGAGACCTGGTGACTGGGCCCTCGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp GCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCATGGATAGCTCTTGTTaGCCTTGCGCAGGCCATCAA +
Preference number: 4 (lower is better)
Translates to: ARCPFLTGMEVSGAFRRPMDSSC*PCAGHQ
Trigger: TTGATGGCCTGCGCAAGGTCAACAAGAGCTATCCAT...GGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp CTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCCAGGCAAAGGCAATGCTGTCCTTCACTaGGCCGAGAAGGGCCTTGTC +
Preference number: 4 (lower is better)
Translates to: LLWAQALLCSLGMGPGKGNAVLH*AEKGLV
Trigger: GACAAGGCCCTTCTCGGCTCAGTGAAGGACAGCATT...GCCTTTGCCTGGCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp GCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCCCCCACTGGAAACCTTaGACAATGCTGTCCTTCACT +
Preference number: 4 (lower is better)
Translates to: ARCPFLTGMEVSGAFRRPPHWKP*TMLSFT
Trigger: AGTGAAGGACAGCATTGTTCAAGGTTTCCAGTGGGG...GGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGC
59% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp AAACCAGGCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGGACGGGGAGTGGCCATaGGGAAGGCAGAGTACACTA +
Preference number: 4 (lower is better)
Translates to: KPGQMPLPHWDGGFWGVQDGEWP*GRQSTL
Trigger: TAGTGTACTCTGCCTTCCTCATGGCCACTCCCCGTC...CTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGCCTGGTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR GCA 90 bp AAACCAGGCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGAGCTCCTCTGGGAGCTaGTGCTGGGAGCCTTTTTGG +
Preference number: 4 (lower is better)
Translates to: KPGQMPLPHWDGGFWGVQSSSGS*CWEPFW
Trigger: CCAAAAAGGCTCCCAGCAGCAGCTCCCAGAGGAGCT...CTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGCCTGGTTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR GCA 90 bp TCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCCATAGCAGTTCCCGATGTGCCCAGGATCACATaGTCGCCAGACTCTTCCACC +
Preference number: 4 (lower is better)
Translates to: SLGWRFLGRSDGPIAVPDVPRIT*SPDSST
Trigger: GGTGGAAGAGTCTGGCGAGCATGTGATCCTGGGCAC...ATCGGGAACTGCTATGGGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR GCA 90 bp TCGAGGGCCCAGTCACCAGGTCTCGGCTTGAGTCTAGAGCTGCCAGCCCCTTCAAGCAGACACACAATCTaGAGGAGCCTGGACCTCTAC +
Preference number: 4 (lower is better)
Translates to: SRAQSPGLGLSLELPAPSSRHTI*RSLDLY
Trigger: GTAGAGGTCCAGGCTCCTGCAGATTGTGTGTCTGCT...TGAAGGGGCTGGCAGCTCTAGACTCAAGCCGAGACCTGGTGACTGGGCCCTCGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp CTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCCAGGCAAAGGCACACCTCCTCGGCCGTaGGGTAGTACTTCTTGTCCT +
Preference number: 4 (lower is better)
Translates to: LLWAQALLCSLGMGPGKGTPPRP*GSTSCP
Trigger: AGGACAAGAAGTACTACCCCACGGCCGAGGAGGTGT...GCCTTTGCCTGGCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp GAAACCAGGCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCATTCGTCCAGGGTCCTTaGCAGGCTGGTGTCCACATC +
Preference number: 4 (lower is better)
Translates to: ETRPDAPSSLGWRFLGRSFVQGP*QAGVHI
Trigger: GATGTGGACACCAGCCTGCCAAGGACCCTGGACGAA...TGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGCCTGGTTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp CTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCCAGGCAAAGGCGCTCGATCTTGGGTTTaGCGCCCACCTTTGGAGATG +
Preference number: 4 (lower is better)
Translates to: LLWAQALLCSLGMGPGKGARSWV*RPPLEM
Trigger: CATCTCCAAAGGTGGGCGCCAAACCCAAGATCGAGC...GCCTTTGCCTGGCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp GCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCGTCTTCACGATCGGCTaGTCAACACCTTCAATCAGG +
Preference number: 4 (lower is better)
Translates to: ARCPFLTGMEVSGAFRRPVFTIG*STPSIR
Trigger: CCTGATTGAAGGTGTTGACCAGCCGATCGTGAAGAC...GGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp AAACCAGGCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGAGAGGGGTCCTTCCCTaGTCCCCCACTGGAAACCTT +
Preference number: 4 (lower is better)
Translates to: KPGQMPLPHWDGGFWGVQRGVLP*SPTGNL
Trigger: AAGGTTTCCAGTGGGGGACCAGGGAAGGACCCCTCT...CTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGCCTGGTTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp CCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCCATAGCAGTCATGACCCCTGCGTCTaGCCAGGACTGTGTAAACAG +
Preference number: 4 (lower is better)
Translates to: PFLTGMEVSGAFRRPHSSHDPCV*PGLCKQ
Trigger: CTGTTTACACAGTCCTGGCCAGACGCAGGGGTCATG...ACTGCTATGGGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp TTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCCAGGCAAAGCCTGCACTGCGTGCTTaGTCAGCCGCTCTGTGTTCA +
Preference number: 4 (lower is better)
Translates to: FFSGPKLSSVPWEWGQAKPALRA*SAALCS
Trigger: TGAACACAGAGCGGCTGATCAAGCACGCAGTGCAGG...CTTTGCCTGGCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp CCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCCATAGCAGTAGAGTGGCTCCAAGATaGACTCCACGAAGCTCCTCT +
Preference number: 4 (lower is better)
Translates to: PFLTGMEVSGAFRRPHSSRVAPR*TPRSSS
Trigger: AGAGGAGCTTCGTGGAGTTCATCTTGGAGCCACTCT...ACTGCTATGGGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp CATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCCAGGGCTCCAGCGGGCGAATaGCAATGCTCTTGTCCAGAG +
Preference number: 4 (lower is better)
Translates to: HSSSLGPSSPLFLGNGARAPAGE*QCSCPE
Trigger: CTCTGGACAAGAGCATTGTCATTCGCCCGCTGGAGC...CCTGGCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp TTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCCAGGCAAAGGCTCCAGCGGGCGAATaGCAATGCTCTTGTCCAGAG +
Preference number: 4 (lower is better)
Translates to: FFSGPKLSSVPWEWGQAKAPAGE*QCSCPE
Trigger: CTCTGGACAAGAGCATTGTCATTCGCCCGCTGGAGC...CTTTGCCTGGCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR GCA 90 bp GTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGAGCACCTTCACAGGCTaGCCAGCGTGGATGGTGCCG +
Preference number: 4 (lower is better)
Translates to: VLILLLWAQALLCSLGMGSTFTG*PAWMVP
Trigger: CGGCACCATCCACGCTGGGCAGCCTGTGAAGGTGCT...CCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp CATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCCAGGCTTCCTCCTGGACTATaGTCTCCACCTCGGGACCGT +
Preference number: 4 (lower is better)
Translates to: HSSSLGPSSPLFLGNGARLPPGL*SPPRDR
Trigger: ACGGTCCCGAGGTGGAGACCATAGTCCAGGAGGAAG...CCTGGCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp CCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCCATAGCAGTGACGTTGCCCAGGAGTaGAGAAAGGATCAGGTTCTC +
Preference number: 4 (lower is better)
Translates to: PFLTGMEVSGAFRRPHSSDVAQE*RKDQVL
Trigger: GAGAACCTGATCCTTTCTCCACTCCTGGGCAACGTC...ACTGCTATGGGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp CTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCCAGGCAAAGGCTGCTGTACTGGGAACTaGAGAAGCAGACGTTGCCCA +
Preference number: 4 (lower is better)
Translates to: LLWAQALLCSLGMGPGKGCCTGN*RSRRCP
Trigger: TGGGCAACGTCTGCTTCTCCAGTTCCCAGTACAGCA...GCCTTTGCCTGGCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp CCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCCATAGCAGTAGGTATGCTCGATCTTaGGTTTGGCGCCCACCTTTG +
Preference number: 4 (lower is better)
Translates to: PFLTGMEVSGAFRRPHSSRYARS*VWRPPL
Trigger: CAAAGGTGGGCGCCAAACCCAAGATCGAGCATACCT...ACTGCTATGGGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp ATCTTGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAAGCTGCCCAGCGTGGATaGTGCCGCTCAGCACCCGGC +
Preference number: 4 (lower is better)
Translates to: ILFSFFFSGPKLSSVPWEAAQRG*CRSAPG
Trigger: GCCGGGTGCTGAGCGGCACCATCCACGCTGGGCAGC...TTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACAAGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp GCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCACAGAATGTCACAACTaGGTCAGCCACCTTGATGTC +
Preference number: 4 (lower is better)
Translates to: ARCPFLTGMEVSGAFRRPTECHN*VSHLDV
Trigger: GACATCAAGGTGGCTGACCCAGTTGTGACATTCTGT...GGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp GAAACCAGGCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCACATGACCCCTGCGTCTaGCCAGGACTGTGTAAACAG +
Preference number: 4 (lower is better)
Translates to: ETRPDAPSSLGWRFLGRSHDPCV*PGLCKQ
Trigger: CTGTTTACACAGTCCTGGCCAGACGCAGGGGTCATG...TGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGCCTGGTTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp AAACCAGGCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGGAGGGGAGCCTGGTATaGGTGCATCCTGAGTCACAT +
Preference number: 4 (lower is better)
Translates to: KPGQMPLPHWDGGFWGVQEGSLV*VHPESH
Trigger: ATGTGACTCAGGATGCACCCATACCAGGCTCCCCTC...CTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGCCTGGTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp GCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCTCAGAAAAATTCACATaGCCTGGCGTGTCCATGATG +
Preference number: 4 (lower is better)
Translates to: ARCPFLTGMEVSGAFRRPSEKFT*PGVSMM
Trigger: CATCATGGACACGCCAGGTCATGTGAATTTTTCTGA...GGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp AAACCAGGCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGCTGGGTCAGCCACCTTaGTGTCGATCTCTGAGTACA +
Preference number: 4 (lower is better)
Translates to: KPGQMPLPHWDGGFWGVQLGQPP*CRSLST
Trigger: TGTACTCAGAGATCGACATCAAGGTGGCTGACCCAG...CTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGCCTGGTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp CCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCCATAGCAGTCCCCACTGGAAACCTTaGACAATGCTGTCCTTCACT +
Preference number: 4 (lower is better)
Translates to: PFLTGMEVSGAFRRPHSSPHWKP*TMLSFT
Trigger: AGTGAAGGACAGCATTGTTCAAGGTTTCCAGTGGGG...ACTGCTATGGGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp GAAACCAGGCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAAGTCTCAAAGCCGAATaGGTCGATGGCCGGGATGAA +
Preference number: 4 (lower is better)
Translates to: ETRPDAPSSLGWRFLGRSSLKAE*VDGRDE
Trigger: TTCATCCCGGCCATCGACTCATTCGGCTTTGAGACT...TGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGCCTGGTTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp TCGAGGGCCCAGTCACCAGGTCTCGGCTTGAGTCTAGAGCTGCCAGCCCCTTCACGTCGAAGAACTTGCTaGTGCTCACATCTTCACTCA +
Preference number: 4 (lower is better)
Translates to: SRAQSPGLGLSLELPAPSRRRTC*CSHLHS
Trigger: TGAGTGAAGATGTGAGCATCAGCAAGTTCTTCGACG...TGAAGGGGCTGGCAGCTCTAGACTCAAGCCGAGACCTGGTGACTGGGCCCTCGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR GCA 90 bp CATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCCAGGCTACGAAACAGGTCTTaGCGTGGTGGAGATGGCCAC +
Preference number: 4 (lower is better)
Translates to: HSSSLGPSSPLFLGNGARLRNRS*RGGDGH
Trigger: GTGGCCATCTCCACCACGGCAAGACCTGTTTCGTAG...CCTGGCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR GCA 90 bp TGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGAGCACCTTCACAGGCTaGCCAGCGTGGATGGTGCCG +
Preference number: 4 (lower is better)
Translates to: CSHSSSLGPSSPLFLGNGSTFTG*PAWMVP
Trigger: CGGCACCATCCACGCTGGGCAGCCTGTGAAGGTGCT...CCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp TTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCCAGGCAAAGACACCTCCTCGGCCGTaGGGTAGTACTTCTTGTCCT +
Preference number: 4 (lower is better)
Translates to: FFSGPKLSSVPWEWGQAKTPPRP*GSTSCP
Trigger: AGGACAAGAAGTACTACCCCACGGCCGAGGAGGTGT...CTTTGCCTGGCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp GAAACCAGGCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCATGCTGTACTGGGAACTaGAGAAGCAGACGTTGCCCA +
Preference number: 4 (lower is better)
Translates to: ETRPDAPSSLGWRFLGRSCCTGN*RSRRCP
Trigger: TGGGCAACGTCTGCTTCTCCAGTTCCCAGTACAGCA...TGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGCCTGGTTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp CCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCCATAGCAGTTACATCTTCGTCGTGTaGCACATCAGGGGACCATCT +
Preference number: 4 (lower is better)
Translates to: PFLTGMEVSGAFRRPHSSYIFVV*HIRGPS
Trigger: AGATGGTCCCCTGATGTGCCACACGACGAAGATGTA...ACTGCTATGGGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp GTGCGGAGATCAGTCTCAAAGCCGAATGAGTCGATGGCCGGGATGAACGCTTTGAGAGGGGTCCTTCCCTaGTCCCCCACTGGAAACCTT +
Preference number: 4 (lower is better)
Translates to: VRRSVSKPNESMAGMNALRGVLP*SPTGNL
Trigger: AAGGTTTCCAGTGGGGGACCAGGGAAGGACCCCTCT...CAAAGCGTTCATCCCGGCCATCGACTCATTCGGCTTTGAGACTGATCTCCGCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000132543.2
CDS-3UTR CCA 90 bp AGACAGGGAAAAGGCCTGTCCCTGGGTGTGAGTGCGGAGATCAGTCTCAAAGCCCATGACCCCTGCGTCTaGCCAGGACTGTGTAAACAG +
Preference number: 4 (lower is better)
Translates to: RQGKGLSLGVSAEISLKAHDPCV*PGLCKQ
Trigger: CTGTTTACACAGTCCTGGCCAGACGCAGGGGTCATG...GGCTTTGAGACTGATCTCCGCACTCACACCCAGGGACAGGCCTTTTCCCTGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132543.2
CDS-3UTR CCA 90 bp CCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCCATAGCAGTGGGACAATCTGCCAATaGTGGAAGACAGACAGGGAA +
Preference number: 4 (lower is better)
Translates to: PFLTGMEVSGAFRRPHSSGTICQ*WKTDRE
Trigger: TTCCCTGTCTGTCTTCCACCATTGGCAGATTGTCCC...ACTGCTATGGGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
3UTR CAA 72 bp CACACGGTGACTGCTAACCTTTCCTGCACTGCGTGCTaGATCAGCCGCTCTGTGTTCAGCATCACCCCCTCA +
Preference number: 4 (lower is better)
Translates to: HTVTANLSCTAC*ISRSVFSITPS
Trigger: TGAGGGGGTGATGCTGAACACAGAGCGGCTGATCAAGCACGCAGTGCAGGAAAGGTTAGCAGTCACCGTGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000138483.8
CDS-3UTR TCA 90 bp CATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCCAGGCCATCTCATACACCGTaGCGGGTAATGTCTGCTCCA +
Preference number: 4 (lower is better)
Translates to: HSSSLGPSSPLFLGNGARPSHTP*RVMSAP
Trigger: TGGAGCAGACATTACCCGTCACGGTGTATGAGATGG...CCTGGCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp TCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCCATAGCAGTTCCCGATGGTCATAGCGCTTTCTaGTTTCCGGATGCGTCTGTT +
Preference number: 4 (lower is better)
Translates to: SLGWRFLGRSDGPIAVPDGHSAF*FPDASV
Trigger: AACAGACGCATCCGGAAATCAGAAAGCGCTATGACC...ATCGGGAACTGCTATGGGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp GTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCATTTTGGGCAGCTCTaGGGGGTTAACCGGCTCCAC +
Preference number: 4 (lower is better)
Translates to: VLILLLWAQALLCSLGMGHFGQL*GVNRLH
Trigger: GTGGAGCCGGTTAACCCCTCAGAGCTGCCCAAAATG...CCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp TCGAAGAACTTGCTGATGCTCACATCTTCACTCAGGCCCTTCCTACGACGGGTTTCCTGGCTGTGGGAATaGTCTGACCTCCACCCCGGT +
Preference number: 4 (lower is better)
Translates to: SKNLLMLTSSLRPFLRRVSWLWE*SDLHPG
Trigger: ACCGGGGTGGAGGTCAGATCATTCCCACAGCCAGGA...AACCCGTCGTAGGAAGGGCCTGAGTGAAGATGTGAGCATCAGCAAGTTCTTCGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132543.2
CDS-3UTR TCA 90 bp TTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCGACGGGGAGTGGCCATaGGGAAGGCAGAGTACACTA +
Preference number: 4 (lower is better)
Translates to: FSFFFSGPKLSSVPWEWGDGEWP*GRQSTL
Trigger: TAGTGTACTCTGCCTTCCTCATGGCCACTCCCCGTC...GCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR GCA 90 bp CATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCCAGGTACTTCTTGTCCTCATaGAGCACCACCTCCATGCCG +
Preference number: 4 (lower is better)
Translates to: HSSSLGPSSPLFLGNGARYFLSS*STTSMP
Trigger: CGGCATGGAGGTGGTGCTGCATGAGGACAAGAAGTA...CCTGGCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR GCA 90 bp CCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCCATAGCAGTGGAGATGGAATGTGCTaGACACACATGTCCACAAAG +
Preference number: 4 (lower is better)
Translates to: PFLTGMEVSGAFRRPHSSGDGMC*THMSTK
Trigger: CTTTGTGGACATGTGTGTGCAGCACATTCCATCTCC...ACTGCTATGGGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp CATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCCAGGGACGTTGCCCAGGAGTaGAGAAAGGATCAGGTTCTC +
Preference number: 4 (lower is better)
Translates to: HSSSLGPSSPLFLGNGARDVAQE*RKDQVL
Trigger: GAGAACCTGATCCTTTCTCCACTCCTGGGCAACGTC...CCTGGCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp AAACCAGGCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGGCCCACCTTTGGAGATaGAATGTGCTGCACACACAT +
Preference number: 4 (lower is better)
Translates to: KPGQMPLPHWDGGFWGVQAHLWR*NVLHTH
Trigger: ATGTGTGTGCAGCACATTCCATCTCCAAAGGTGGGC...CTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGCCTGGTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp GTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGGGTCACAGTCGCTCATaGCCTCGCCAAGGTCAGAGT +
Preference number: 4 (lower is better)
Translates to: VLILLLWAQALLCSLGMGGHSRS*PRQGQS
Trigger: ACTCTGACCTTGGCGAGGCCATGAGCGACTGTGACC...CCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAAC
56% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp GAAACCAGGCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCACTCGGGGTTCAGTTATaGTTGCTGTCTTCACGATCG +
Preference number: 4 (lower is better)
Translates to: ETRPDAPSSLGWRFLGRSLGVQL*LLSSRS
Trigger: CGATCGTGAAGACAGCAACCATAACTGAACCCCGAG...TGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGCCTGGTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp TTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCAGAGGGGTCCTTCCCTaGTCCCCCACTGGAAACCTT +
Preference number: 4 (lower is better)
Translates to: FSFFFSGPKLSSVPWEWGRGVLP*SPTGNL
Trigger: AAGGTTTCCAGTGGGGGACCAGGGAAGGACCCCTCT...GCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp CATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCCAGGATAGAGAGGGGAGCCTaGTATGGGTGCATCCTGAGT +
Preference number: 4 (lower is better)
Translates to: HSSSLGPSSPLFLGNGARIERGA*YGCILS
Trigger: ACTCAGGATGCACCCATACCAGGCTCCCCTCTCTAT...CCTGGCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp CATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCCAGGGGTCATAGCGCTTTCTaGTTTCCGGATGCGTCTGTT +
Preference number: 4 (lower is better)
Translates to: HSSSLGPSSPLFLGNGARGHSAF*FPDASV
Trigger: AACAGACGCATCCGGAAATCAGAAAGCGCTATGACC...CCTGGCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp TGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGCCTGCACTGCGTGCTTaGTCAGCCGCTCTGTGTTCA +
Preference number: 4 (lower is better)
Translates to: CSHSSSLGPSSPLFLGNGPALRA*SAALCS
Trigger: TGAACACAGAGCGGCTGATCAAGCACGCAGTGCAGG...CCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp TTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCCAGGCAAAGATGGATAGCTCTTGTTaGCCTTGCGCAGGCCATCAA +
Preference number: 4 (lower is better)
Translates to: FFSGPKLSSVPWEWGQAKMDSSC*PCAGHQ
Trigger: TTGATGGCCTGCGCAAGGTCAACAAGAGCTATCCAT...CTTTGCCTGGCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp TCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCCATAGCAGTTCCCGATTCTCAGCAAAGCATTTaGGGGAGGACGTTTCTACCA +
Preference number: 4 (lower is better)
Translates to: SLGWRFLGRSDGPIAVPDSQQSI*GRTFLP
Trigger: TGGTAGAAACGTCCTCCCTCAAATGCTTTGCTGAGA...ATCGGGAACTGCTATGGGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp TTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCAATGCTGTCCTTCACTaGGCCGAGAAGGGCCTTGTC +
Preference number: 4 (lower is better)
Translates to: FSFFFSGPKLSSVPWEWGNAVLH*AEKGLV
Trigger: GACAAGGCCCTTCTCGGCTCAGTGAAGGACAGCATT...GCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp GAAACCAGGCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCACGTCGAAGAACTTGCTaGTGCTCACATCTTCACTCA +
Preference number: 4 (lower is better)
Translates to: ETRPDAPSSLGWRFLGRSRRRTC*CSHLHS
Trigger: TGAGTGAAGATGTGAGCATCAGCAAGTTCTTCGACG...TGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGCCTGGTTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp CGAATGACAATGCTCTTGTCCAGAGGATCGCCTGGGACAATCTGCCAATGGTGGGGAGCCTGGACCTCATaGGGAAGGCAGAGTACACTA +
Preference number: 4 (lower is better)
Translates to: RMTMLLSRGSPGTICQWWGAWTS*GRQSTL
Trigger: TAGTGTACTCTGCCTTCCTCATGAGGTCCAGGCTCC...CCACCATTGGCAGATTGTCCCAGGCGATCCTCTGGACAAGAGCATTGTCATTCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132543.2
CDS-3UTR GCA 90 bp TTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCCTACGAAACAGGTCTTaGCGTGGTGGAGATGGCCAC +
Preference number: 4 (lower is better)
Translates to: FSFFFSGPKLSSVPWEWGLRNRS*RGGDGH
Trigger: GTGGCCATCTCCACCACGGCAAGACCTGTTTCGTAG...GCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR GCA 90 bp TTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCCTTTCCTGCACTGCGTaGTTGATCAGCCGCTCTGTG +
Preference number: 4 (lower is better)
Translates to: FSFFFSGPKLSSVPWEWGLSCTA*LISRSV
Trigger: CACAGAGCGGCTGATCAAGCACGCAGTGCAGGAAAG...GCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR GCA 90 bp CCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCCATAGCAGTTTTGGAGATGGAATGTaGTGCACACACATGTCCACA +
Preference number: 4 (lower is better)
Translates to: PFLTGMEVSGAFRRPHSSFGDGM*CTHMST
Trigger: TGTGGACATGTGTGTGCAGCACATTCCATCTCCAAA...ACTGCTATGGGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR GCA 90 bp TCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCCATAGCAGTTCCCGATGGACTCCATCATCTGTaGTGTACATCTTCGTCGTGT +
Preference number: 4 (lower is better)
Translates to: SLGWRFLGRSDGPIAVPDGLHHL*CTSSSC
Trigger: ACACGACGAAGATGTACAGCACAGATGATGGAGTCC...ATCGGGAACTGCTATGGGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR GCA 90 bp GTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGGTCCCTGGGTGTGAGTaGGGAGATCAGTCTCAAAGC +
Preference number: 4 (lower is better)
Translates to: VLILLLWAQALLCSLGMGVPGCE*GDQSQS
Trigger: GCTTTGAGACTGATCTCCGCACTCACACCCAGGGAC...CCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp GCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCTCAGGTTCTCGTCGGTaGAATACATGCTTATTAATC +
Preference number: 4 (lower is better)
Translates to: ARCPFLTGMEVSGAFRRPSGSRR*NTCLLI
Trigger: GATTAATAAGCATGTATTCCACCGACGAGAACCTGA...GGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp GTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGGCTCGATCTTGGGTTTaGCGCCCACCTTTGGAGATG +
Preference number: 4 (lower is better)
Translates to: VLILLLWAQALLCSLGMGARSWV*RPPLEM
Trigger: CATCTCCAAAGGTGGGCGCCAAACCCAAGATCGAGC...CCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp TTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCCAGGCAAAGCTCGGGGTTCAGTTATaGTTGCTGTCTTCACGATCG +
Preference number: 4 (lower is better)
Translates to: FFSGPKLSSVPWEWGQAKLGVQL*LLSSRS
Trigger: CGATCGTGAAGACAGCAACCATAACTGAACCCCGAG...CTTTGCCTGGCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp CATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCCAGGGGGACAATCTGCCAATaGTGGAAGACAGACAGGGAA +
Preference number: 4 (lower is better)
Translates to: HSSSLGPSSPLFLGNGARGTICQ*WKTDRE
Trigger: TTCCCTGTCTGTCTTCCACCATTGGCAGATTGTCCC...CCTGGCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp ATCTTGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAAGTGAGGAGCTGGCTGTaGCTCCAGCGGGCGAATGAC +
Preference number: 4 (lower is better)
Translates to: ILFSFFFSGPKLSSVPWEVRSWL*LQRAND
Trigger: GTCATTCGCCCGCTGGAGCCACAGCCAGCTCCTCAC...TTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACAAGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp TCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCCATAGCAGTTCCCGATTGTCCACAAAGCCTGTaGACTCGCCAAAGAACTTTT +
Preference number: 4 (lower is better)
Translates to: SLGWRFLGRSDGPIAVPDCPQSL*TRQRTF
Trigger: AAAAGTTCTTTGGCGAGTTCACAGGCTTTGTGGACA...ATCGGGAACTGCTATGGGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp TGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGACCCGGCCGAAGGCATaGAACTGGACTCCATCATCT +
Preference number: 4 (lower is better)
Translates to: CSHSSSLGPSSPLFLGNGTRPKA*NWTPSS
Trigger: AGATGATGGAGTCCAGTTTCATGCCTTCGGCCGGGT...CCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp ATCTTGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATCCTGGCTGTGGGAATaGTCTGACCTCCACCCCGGT +
Preference number: 4 (lower is better)
Translates to: ILFSFFFSGPKLSSVPWESWLWE*SDLHPG
Trigger: ACCGGGGTGGAGGTCAGATCATTCCCACAGCCAGGA...TTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACAAGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp TTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCAGTCTCAAAGCCGAATaGGTCGATGGCCGGGATGAA +
Preference number: 4 (lower is better)
Translates to: FSFFFSGPKLSSVPWEWGSLKAE*VDGRDE
Trigger: TTCATCCCGGCCATCGACTCATTCGGCTTTGAGACT...GCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR GCA 90 bp ATCTTGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAAGGGTGGTCATCCTCGTaGTCTCCCACGTCATCCTCG +
Preference number: 4 (lower is better)
Translates to: ILFSFFFSGPKLSSVPWEGWSSS*SPTSSS
Trigger: CGAGGATGACGTGGGAGAGCACGAGGATGACCACCC...TTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACAAGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR GCA 90 bp ATCTTGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAAGGTAGAGCTCCCCAGTaGCCAGGATCACATGCTCGC +
Preference number: 4 (lower is better)
Translates to: ILFSFFFSGPKLSSVPWEGRAPQ*PGSHAR
Trigger: GCGAGCATGTGATCCTGGGCACTGGGGAGCTCTACC...TTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACAAGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR GCA 90 bp TGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGGAGCCTGGTATGGGTaGATCCTGAGTCACATGACC +
Preference number: 4 (lower is better)
Translates to: CSHSSSLGPSSPLFLGNGGAWYG*ILSHMT
Trigger: GGTCATGTGACTCAGGATGCACCCATACCAGGCTCC...CCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR GCA 90 bp ATCTTCACTCAGGCCCTTCCTACGACGGGTTTTGATCATGAACTCCCGAGCCAGAGCAGACACACAATCTaGAGGAGCCTGGACCTCATG +
Preference number: 4 (lower is better)
Translates to: IFTQALPTTGFDHELPSQSRHTI*RSLDLM
Trigger: CATGAGGTCCAGGCTCCTGCAGATTGTGTGTCTGCT...CTGGCTCGGGAGTTCATGATCAAAACCCGTCGTAGGAAGGGCCTGAGTGAAGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132543.2
CDS-3UTR CCA 90 bp AAACCAGGCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGCAGGATCTTATAGAGTaGCTCCAAGATGAACTCCAC +
Preference number: 4 (lower is better)
Translates to: KPGQMPLPHWDGGFWGVQQDLIE*LQDELH
Trigger: GTGGAGTTCATCTTGGAGCCACTCTATAAGATCCTG...CTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGCCTGGTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp TTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCTTTGGCGCCCACCTTTaGAGATGGAATGTGCTGCAC +
Preference number: 4 (lower is better)
Translates to: FSFFFSGPKLSSVPWEWGFGAHL*RWNVLH
Trigger: GTGCAGCACATTCCATCTCCAAAGGTGGGCGCCAAA...GCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp TCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCCATAGCAGTTCCCGATCTTGGTGGTGAGAGATaGATAGCTCTTGTTGACCTT +
Preference number: 4 (lower is better)
Translates to: SLGWRFLGRSDGPIAVPDLGGER*IALVDL
Trigger: AAGGTCAACAAGAGCTATCCATCTCTCACCACCAAG...ATCGGGAACTGCTATGGGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp GCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCTCTTGTTCTTCTTATTaGGTGTCTCAGCAAAGCATT +
Preference number: 4 (lower is better)
Translates to: ARCPFLTGMEVSGAFRRPSCSSY*VSQQSI
Trigger: AATGCTTTGCTGAGACACCCAATAAGAAGAACAAGA...GGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp GAAACCAGGCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCACTGTTCCAGGTGATCTaGACCACTTCATTCTCTATG +
Preference number: 4 (lower is better)
Translates to: ETRPDAPSSLGWRFLGRSLFQVI*TTSFSM
Trigger: CATAGAGAATGAAGTGGTCCAGATCACCTGGAACAG...TGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGCCTGGTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
3UTR CAA 72 bp GGAGGCAGCTTCAGCTCCAAGATCAGCCGGTCGATTTaGTTGATACACACGGTGACTGCTAACCTTTCCTGC +
Preference number: 4 (lower is better)
Translates to: GGSFSSKISRSI*LIHTVTANLSC
Trigger: GCAGGAAAGGTTAGCAGTCACCGTGTGTATCAACAAAATCGACCGGCTGATCTTGGAGCTGAAGCTGCCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138483.8
CDS-3UTR TCA 90 bp GTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGTTAGCTCTTCCTTGGTaGGGTGGATGCCAAGTTCGT +
Preference number: 4 (lower is better)
Translates to: VLILLLWAQALLCSLGMGLALPW*GGCQVR
Trigger: ACGAACTTGGCATCCACCTCACCAAGGAAGAGCTAA...CCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp TTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCCAGGCAAAGTGTCCACAAAGCCTGTaGACTCGCCAAAGAACTTTT +
Preference number: 4 (lower is better)
Translates to: FFSGPKLSSVPWEWGQAKCPQSL*TRQRTF
Trigger: AAAAGTTCTTTGGCGAGTTCACAGGCTTTGTGGACA...CTTTGCCTGGCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp TTCATCTTGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGCATTTTGGGCAGCTCTaGGGGGTTAACCGGCTCCAC +
Preference number: 4 (lower is better)
Translates to: FILFSFFFSGPKLSSVPWHFGQL*GVNRLH
Trigger: GTGGAGCCGGTTAACCCCTCAGAGCTGCCCAAAATG...CCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACAAGATGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp GTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCTTGATGTCGATCTCTaGGTACATCTTCCGCAGGTC +
Preference number: 4 (lower is better)
Translates to: VLILLLWAQALLCSLGMGLDVDL*VHLPQV
Trigger: GACCTGCGGAAGATGTACTCAGAGATCGACATCAAG...CCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR GCA 90 bp TTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCCAGGCAAAGGTGACGGGTAATGTCTaGTCCATCAGAGTGAATTTC +
Preference number: 4 (lower is better)
Translates to: FFSGPKLSSVPWEWGQAKVTGNV*SIRVNF
Trigger: GAAATTCACTCTGATGGAGCAGACATTACCCGTCAC...CTTTGCCTGGCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR GCA 90 bp TTCATCTTGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGAGCTCCTCTGGGAGCTaGTGCTGGGAGCCTTTTTGG +
Preference number: 4 (lower is better)
Translates to: FILFSFFFSGPKLSSVPWSSSGS*CWEPFW
Trigger: CCAAAAAGGCTCCCAGCAGCAGCTCCCAGAGGAGCT...CCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACAAGATGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp CATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCCAGGCAGGATCTTATAGAGTaGCTCCAAGATGAACTCCAC +
Preference number: 4 (lower is better)
Translates to: HSSSLGPSSPLFLGNGARQDLIE*LQDELH
Trigger: GTGGAGTTCATCTTGGAGCCACTCTATAAGATCCTG...CCTGGCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp TGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGTTTGGCGCCCACCTTTaGAGATGGAATGTGCTGCAC +
Preference number: 4 (lower is better)
Translates to: CSHSSSLGPSSPLFLGNGFGAHL*RWNVLH
Trigger: GTGCAGCACATTCCATCTCCAAAGGTGGGCGCCAAA...CCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp TTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCTACATCTTCGTCGTGTaGCACATCAGGGGACCATCT +
Preference number: 4 (lower is better)
Translates to: FSFFFSGPKLSSVPWEWGYIFVV*HIRGPS
Trigger: AGATGGTCCCCTGATGTGCCACACGACGAAGATGTA...GCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp GTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGGTCTTCACGATCGGCTaGTCAACACCTTCAATCAGG +
Preference number: 4 (lower is better)
Translates to: VLILLLWAQALLCSLGMGVFTIG*STPSIR
Trigger: CCTGATTGAAGGTGTTGACCAGCCGATCGTGAAGAC...CCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp GAAACCAGGCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCACAGTCGTACTTTGTTTaGAAAAACTCTCCCAGCTTC +
Preference number: 4 (lower is better)
Translates to: ETRPDAPSSLGWRFLGRSQSYFV*KNSPSF
Trigger: GAAGCTGGGAGAGTTTTTCCAAACAAAGTACGACTG...TGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGCCTGGTTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp TTCATCTTGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGAAGGACCACTCCATCTaGGATGCGCAAGCCAGCTGT +
Preference number: 4 (lower is better)
Translates to: FILFSFFFSGPKLSSVPWKDHSI*DAQASC
Trigger: ACAGCTGGCTTGCGCATCTCAGATGGAGTGGTCCTT...CCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACAAGATGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp GAAACCAGGCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCATGCTTATTAATCCATTaGCCTCATCCACAATGTGTC +
Preference number: 4 (lower is better)
Translates to: ETRPDAPSSLGWRFLGRSCLLIH*PHPQCV
Trigger: GACACATTGTGGATGAGGTCAATGGATTAATAAGCA...TGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGCCTGGTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp TTCATCTTGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGACCCGGCCGAAGGCATaGAACTGGACTCCATCATCT +
Preference number: 4 (lower is better)
Translates to: FILFSFFFSGPKLSSVPWTRPKA*NWTPSS
Trigger: AGATGATGGAGTCCAGTTTCATGCCTTCGGCCGGGT...CCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACAAGATGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp TGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGCTTGATGTCGATCTCTaGGTACATCTTCCGCAGGTC +
Preference number: 4 (lower is better)
Translates to: CSHSSSLGPSSPLFLGNGLDVDL*VHLPQV
Trigger: GACCTGCGGAAGATGTACTCAGAGATCGACATCAAG...CCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR GCA 90 bp TCGAGGGCCCAGTCACCAGGTCTCGGCTTGAGTCTAGAGCTGCCAGCCCCTTCATTTCTGATTTCCGGATaGGTCTGTTCTATTAAACAA +
Preference number: 4 (lower is better)
Translates to: SRAQSPGLGLSLELPAPSFLISG*VCSIKQ
Trigger: TTGTTTAATAGAACAGACGCATCCGGAAATCAGAAA...TGAAGGGGCTGGCAGCTCTAGACTCAAGCCGAGACCTGGTGACTGGGCCCTCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR GCA 90 bp TTCATCTTGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGCTTTCCTGCACTGCGTaGTTGATCAGCCGCTCTGTG +
Preference number: 4 (lower is better)
Translates to: FILFSFFFSGPKLSSVPWLSCTA*LISRSV
Trigger: CACAGAGCGGCTGATCAAGCACGCAGTGCAGGAAAG...CCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACAAGATGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR GCA 90 bp TTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCGGAAACCTTGAACAATaGTGTCCTTCACTGAGCCGA +
Preference number: 4 (lower is better)
Translates to: FSFFFSGPKLSSVPWEWGGNLEQ*CPSLSR
Trigger: TCGGCTCAGTGAAGGACAGCATTGTTCAAGGTTTCC...GCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp AAACCAGGCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGTCAGGTTCTCGTCGGTaGAATACATGCTTATTAATC +
Preference number: 4 (lower is better)
Translates to: KPGQMPLPHWDGGFWGVQSGSRR*NTCLLI
Trigger: GATTAATAAGCATGTATTCCACCGACGAGAACCTGA...CTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGCCTGGTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp TTCATCTTGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGCCCACGGTGCAGATCTaGGAATCTTCCTCGTCTTCC +
Preference number: 4 (lower is better)
Translates to: FILFSFFFSGPKLSSVPWPTVQI*ESSSSS
Trigger: GGAAGACGAGGAAGATTCCCAGATCTGCACCGTGGG...CCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACAAGATGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp CCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCCATAGCAGTTCTTGTTCTTCTTATTaGGTGTCTCAGCAAAGCATT +
Preference number: 4 (lower is better)
Translates to: PFLTGMEVSGAFRRPHSSSCSSY*VSQQSI
Trigger: AATGCTTTGCTGAGACACCCAATAAGAAGAACAAGA...ACTGCTATGGGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp ATCTTGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAAGTCCAGAGGATCGCCTaGGACAATCTGCCAATGGTG +
Preference number: 4 (lower is better)
Translates to: ILFSFFFSGPKLSSVPWEVQRIA*DNLPMV
Trigger: CACCATTGGCAGATTGTCCCAGGCGATCCTCTGGAC...TTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACAAGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp TTCATCTTGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGTCCAGAGGATCGCCTaGGACAATCTGCCAATGGTG +
Preference number: 4 (lower is better)
Translates to: FILFSFFFSGPKLSSVPWVQRIA*DNLPMV
Trigger: CACCATTGGCAGATTGTCCCAGGCGATCCTCTGGAC...CCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACAAGATGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
3UTR CAA 72 bp GGCAGCTTCAGCTCCAAGATCAGCCGGTCGATTTTGTaGATACACACGGTGACTGCTAACCTTTCCTGCACT +
Preference number: 4 (lower is better)
Translates to: GSFSSKISRSIL*IHTVTANLSCT
Trigger: AGTGCAGGAAAGGTTAGCAGTCACCGTGTGTATCAACAAAATCGACCGGCTGATCTTGGAGCTGAAGCTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000138483.8
3UTR CAA 72 bp CATCCACAATGTGTCGCAGCTTGTAATAAGCATCTGTaGGAGGCAGCTTCAGCTCCAAGATCAGCCGGTCGA +
Preference number: 4 (lower is better)
Translates to: HPQCVAACNKHL*EAASAPRSAGR
Trigger: TCGACCGGCTGATCTTGGAGCTGAAGCTGCCTCCAACAGATGCTTATTACAAGCTGCGACACATTGTGGATG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138483.8
CDS-3UTR TCA 90 bp ATCTTGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAAAGAGTGGCTCCAAGATaGACTCCACGAAGCTCCTCT +
Preference number: 4 (lower is better)
Translates to: ILFSFFFSGPKLSSVPWERVAPR*TPRSSS
Trigger: AGAGGAGCTTCGTGGAGTTCATCTTGGAGCCACTCT...TTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACAAGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp CAGCAACATAGGATCGTCGAAGAACTTGCTGATGCTCACATCTTCACTCAGGCCCCCCACTGGAAACCTTaGACAATGCTGTCCTTCACT +
Preference number: 4 (lower is better)
Translates to: QQHRIVEELADAHIFTQAPHWKP*TMLSFT
Trigger: AGTGAAGGACAGCATTGTTCAAGGTTTCCAGTGGGG...GGCCTGAGTGAAGATGTGAGCATCAGCAAGTTCTTCGACGATCCTATGTTGCTG
50% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000132543.2
CDS-3UTR GCA 90 bp ATCTTGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATACTTCTTGTCCTCATaGAGCACCACCTCCATGCCG +
Preference number: 4 (lower is better)
Translates to: ILFSFFFSGPKLSSVPWEYFLSS*STTSMP
Trigger: CGGCATGGAGGTGGTGCTGCATGAGGACAAGAAGTA...TTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACAAGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp TGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGACAGAATGTCACAACTaGGTCAGCCACCTTGATGTC +
Preference number: 4 (lower is better)
Translates to: CSHSSSLGPSSPLFLGNGTECHN*VSHLDV
Trigger: GACATCAAGGTGGCTGACCCAGTTGTGACATTCTGT...CCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp ATCTTGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATTAGCTCTTCCTTGGTaGGGTGGATGCCAAGTTCGT +
Preference number: 4 (lower is better)
Translates to: ILFSFFFSGPKLSSVPWELALPW*GGCQVR
Trigger: ACGAACTTGGCATCCACCTCACCAAGGAAGAGCTAA...TTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACAAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp AAACCAGGCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGATCAGAATCAAGCTCTaGTCCAATATAATTCCCAAA +
Preference number: 4 (lower is better)
Translates to: KPGQMPLPHWDGGFWGVQIRIKL*SNIIPK
Trigger: TTTGGGAATTATATTGGACCAGAGCTTGATTCTGAT...CTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGCCTGGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp TTCATCTTGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGCCCACCTTTGGAGATaGAATGTGCTGCACACACAT +
Preference number: 4 (lower is better)
Translates to: FILFSFFFSGPKLSSVPWAHLWR*NVLHTH
Trigger: ATGTGTGTGCAGCACATTCCATCTCCAAAGGTGGGC...CCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACAAGATGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp CCTGAAGACAGGCCCCTTAGGGTTAAACATTTTCATCTTGTTCTCATTCTTCTTAAGGGCCGGAAAATCTaGGCCTCCTCATTGCCTCGG +
Preference number: 4 (lower is better)
Translates to: PEDRPLRVKHFHLVLILLKGRKI*ASSLPR
Trigger: CCGAGGCAATGAGGAGGCTCAGATTTTCCGGCCCTT...AAGAAGAATGAGAACAAGATGAAAATGTTTAACCCTAAGGGGCCTGTCTTCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR GCA 90 bp TTCATCTTGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGGAGATGGAATGTGCTaGACACACATGTCCACAAAG +
Preference number: 4 (lower is better)
Translates to: FILFSFFFSGPKLSSVPWGDGMC*THMSTK
Trigger: CTTTGTGGACATGTGTGTGCAGCACATTCCATCTCC...CCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACAAGATGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR GCA 90 bp TTCATCTTGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGGACTCCATCATCTGTaGTGTACATCTTCGTCGTGT +
Preference number: 4 (lower is better)
Translates to: FILFSFFFSGPKLSSVPWGLHHL*CTSSSC
Trigger: ACACGACGAAGATGTACAGCACAGATGATGGAGTCC...CCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACAAGATGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR GCA 90 bp CCTGAAGACAGGCCCCTTAGGGTTAAACATTTTCATCTTGTTCTCATTCTTCTTGTGCCCAGGATCACATaGTCGCCAGACTCTTCCACC +
Preference number: 4 (lower is better)
Translates to: PEDRPLRVKHFHLVLILLVPRIT*SPDSST
Trigger: GGTGGAAGAGTCTGGCGAGCATGTGATCCTGGGCAC...AAGAAGAATGAGAACAAGATGAAAATGTTTAACCCTAAGGGGCCTGTCTTCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp CCTGAAGACAGGCCCCTTAGGGTTAAACATTTTCATCTTGTTCTCATTCTTCTTCTTCCTCCTGGACTATaGTCTCCACCTCGGGACCGT +
Preference number: 4 (lower is better)
Translates to: PEDRPLRVKHFHLVLILLLPPGL*SPPRDR
Trigger: ACGGTCCCGAGGTGGAGACCATAGTCCAGGAGGAAG...AAGAAGAATGAGAACAAGATGAAAATGTTTAACCCTAAGGGGCCTGTCTTCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp CCTGAAGACAGGCCCCTTAGGGTTAAACATTTTCATCTTGTTCTCATTCTTCTTTTCGTCCAGGGTCCTTaGCAGGCTGGTGTCCACATC +
Preference number: 4 (lower is better)
Translates to: PEDRPLRVKHFHLVLILLFVQGP*QAGVHI
Trigger: GATGTGGACACCAGCCTGCCAAGGACCCTGGACGAA...AAGAAGAATGAGAACAAGATGAAAATGTTTAACCCTAAGGGGCCTGTCTTCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp TTCATCTTGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGTAATAAGCATCTGTTaGAGGCAGCTTCAGCTCCAA +
Preference number: 4 (lower is better)
Translates to: FILFSFFFSGPKLSSVPWVISIC*RQLQLQ
Trigger: TTGGAGCTGAAGCTGCCTCCAACAGATGCTTATTAC...CCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACAAGATGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp CCTGAAGACAGGCCCCTTAGGGTTAAACATTTTCATCTTGTTCTCATTCTTCTTGAGGGGAGCCTGGTATaGGTGCATCCTGAGTCACAT +
Preference number: 4 (lower is better)
Translates to: PEDRPLRVKHFHLVLILLEGSLV*VHPESH
Trigger: ATGTGACTCAGGATGCACCCATACCAGGCTCCCCTC...AAGAAGAATGAGAACAAGATGAAAATGTTTAACCCTAAGGGGCCTGTCTTCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp CCTGAAGACAGGCCCCTTAGGGTTAAACATTTTCATCTTGTTCTCATTCTTCTTCTGGGTCAGCCACCTTaGTGTCGATCTCTGAGTACA +
Preference number: 4 (lower is better)
Translates to: PEDRPLRVKHFHLVLILLLGQPP*CRSLST
Trigger: TGTACTCAGAGATCGACATCAAGGTGGCTGACCCAG...AAGAAGAATGAGAACAAGATGAAAATGTTTAACCCTAAGGGGCCTGTCTTCAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR GCA 90 bp CCTGAAGACAGGCCCCTTAGGGTTAAACATTTTCATCTTGTTCTCATTCTTCTTAGCAGACACACAATCTaGAGGAGCCTGGACCTCTAC +
Preference number: 4 (lower is better)
Translates to: PEDRPLRVKHFHLVLILLSRHTI*RSLDLY
Trigger: GTAGAGGTCCAGGCTCCTGCAGATTGTGTGTCTGCT...AAGAAGAATGAGAACAAGATGAAAATGTTTAACCCTAAGGGGCCTGTCTTCAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp CCTGAAGACAGGCCCCTTAGGGTTAAACATTTTCATCTTGTTCTCATTCTTCTTAGGTATGCTCGATCTTaGGTTTGGCGCCCACCTTTG +
Preference number: 4 (lower is better)
Translates to: PEDRPLRVKHFHLVLILLRYARS*VWRPPL
Trigger: CAAAGGTGGGCGCCAAACCCAAGATCGAGCATACCT...AAGAAGAATGAGAACAAGATGAAAATGTTTAACCCTAAGGGGCCTGTCTTCAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp TTCATCTTGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGCAGTCGTACTTTGTTTaGAAAAACTCTCCCAGCTTC +
Preference number: 4 (lower is better)
Translates to: FILFSFFFSGPKLSSVPWQSYFV*KNSPSF
Trigger: GAAGCTGGGAGAGTTTTTCCAAACAAAGTACGACTG...CCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACAAGATGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR TCA 90 bp TTCATCTTGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGTGCTTATTAATCCATTaGCCTCATCCACAATGTGTC +
Preference number: 4 (lower is better)
Translates to: FILFSFFFSGPKLSSVPWCLLIH*PHPQCV
Trigger: GACACATTGTGGATGAGGTCAATGGATTAATAAGCA...CCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACAAGATGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp GCAGCTTGTAATAAGCATCTGTTGGAGGCAGCTTCAGCTCCAAGATCAGCCGGTATCAGAATCAAGCTCTaGTCCAATATAATTCCCAAA +
Preference number: 4 (lower is better)
Translates to: AACNKHLLEAASAPRSAGIRIKL*SNIIPK
Trigger: TTTGGGAATTATATTGGACCAGAGCTTGATTCTGAT...ACCGGCTGATCTTGGAGCTGAAGCTGCCTCCAACAGATGCTTATTACAAGCTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138483.8
3UTR CAA 72 bp TGGCCACACAAGGTTACGTTTCTGATGAGCTCAGAGTaGTCCATCAGATCTGCTAAGAAATCCATCTCATAC +
Preference number: 4 (lower is better)
Translates to: WPHKVTFLMSSE*SIRSAKKSISY
Trigger: GTATGAGATGGATTTCTTAGCAGATCTGATGGACAACTCTGAGCTCATCAGAAACGTAACCTTGTGTGGCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138483.8
CDS-3UTR GCA 90 bp CCTGAAGACAGGCCCCTTAGGGTTAAACATTTTCATCTTGTTCTCATTCTTCTTGGAAACCTTGAACAATaGTGTCCTTCACTGAGCCGA +
Preference number: 4 (lower is better)
Translates to: PEDRPLRVKHFHLVLILLGNLEQ*CPSLSR
Trigger: TCGGCTCAGTGAAGGACAGCATTGTTCAAGGTTTCC...AAGAAGAATGAGAACAAGATGAAAATGTTTAACCCTAAGGGGCCTGTCTTCAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR GCA 90 bp ATCTTGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATTTCTGATTTCCGGATaGGTCTGTTCTATTAAACAA +
Preference number: 4 (lower is better)
Translates to: ILFSFFFSGPKLSSVPWEFLISG*VCSIKQ
Trigger: TTGTTTAATAGAACAGACGCATCCGGAAATCAGAAA...TTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACAAGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR GCA 90 bp CCTGAAGACAGGCCCCTTAGGGTTAAACATTTTCATCTTGTTCTCATTCTTCTTTTTGGAGATGGAATGTaGTGCACACACATGTCCACA +
Preference number: 4 (lower is better)
Translates to: PEDRPLRVKHFHLVLILLFGDGM*CTHMST
Trigger: TGTGGACATGTGTGTGCAGCACATTCCATCTCCAAA...AAGAAGAATGAGAACAAGATGAAAATGTTTAACCCTAAGGGGCCTGTCTTCAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp TTCATCTTGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGATCAGAATCAAGCTCTaGTCCAATATAATTCCCAAA +
Preference number: 4 (lower is better)
Translates to: FILFSFFFSGPKLSSVPWIRIKL*SNIIPK
Trigger: TTTGGGAATTATATTGGACCAGAGCTTGATTCTGAT...CCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACAAGATGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp TTCATCTTGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGTTTCTTGGTTTTCACTaGCTTTATAATGGGTTCTGT +
Preference number: 4 (lower is better)
Translates to: FILFSFFFSGPKLSSVPWFLGFH*LYNGFC
Trigger: ACAGAACCCATTATAAAGCCAGTGAAAACCAAGAAA...CCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACAAGATGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp CCTGAAGACAGGCCCCTTAGGGTTAAACATTTTCATCTTGTTCTCATTCTTCTTGTAATAAGCATCTGTTaGAGGCAGCTTCAGCTCCAA +
Preference number: 4 (lower is better)
Translates to: PEDRPLRVKHFHLVLILLVISIC*RQLQLQ
Trigger: TTGGAGCTGAAGCTGCCTCCAACAGATGCTTATTAC...AAGAAGAATGAGAACAAGATGAAAATGTTTAACCCTAAGGGGCCTGTCTTCAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CCA 90 bp CCTGAAGACAGGCCCCTTAGGGTTAAACATTTTCATCTTGTTCTCATTCTTCTTCTGTTCCAGGTGATCTaGACCACTTCATTCTCTATG +
Preference number: 4 (lower is better)
Translates to: PEDRPLRVKHFHLVLILLLFQVI*TTSFSM
Trigger: CATAGAGAATGAAGTGGTCCAGATCACCTGGAACAG...AAGAAGAATGAGAACAAGATGAAAATGTTTAACCCTAAGGGGCCTGTCTTCAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS GCA 90 bp CGGCCGTGGGGTAGTACTTCTTGTCCTCATGCAGCACCACCTCCATaGCGGGGTGGTCATCCTCGTGCTCTCCCACGTCATCCTCGTCCT +
Preference number: 5 (lower is better)
Translates to: RPWGSTSCPHAAPPP*RGGHPRALPRHPRP
Trigger: AGGACGAGGATGACGTGGGAGAGCACGAGGATGACCACCCCGGCATGGAGGTGGTGCTGCATGAGGACAAGAAGTACTACCCCACGGCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CCA 90 bp CCTGGACTATGGTCTCCACCTCGGGACCGTACACCTCCTCGGCCGTaGGGTAGTACTTCTTGTCCTCATGCAGCACCACCTCCATGCCGG +
Preference number: 5 (lower is better)
Translates to: PGLWSPPRDRTPPRP*GSTSCPHAAPPPCR
Trigger: CCGGCATGGAGGTGGTGCTGCATGAGGACAAGAAGTACTACCCCACGGCCGAGGAGGTGTACGGTCCCGAGGTGGAGACCATAGTCCAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CCA 90 bp AGGTGTAGTTCTCCCCCAGCACCTTCACAGGCTGCCCAGCGTGGATaGTGCCGCTCAGCACCCGGCCGAAGGCATGAAACTGGACTCCAT +
Preference number: 5 (lower is better)
Translates to: RCSSPPAPSQAAQRG*CRSAPGRRHETGLH
Trigger: ATGGAGTCCAGTTTCATGCCTTCGGCCGGGTGCTGAGCGGCACCATCCACGCTGGGCAGCCTGTGAAGGTGCTGGGGGAGAACTACACCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS-3UTR CAA 90 bp TCGAGGGCCCAGTCACCAGGTCTCGGCTTGAGTCTAGAGCTGCCAGCCCCTTCAGTTCGTCCAGGGTCCTaGGCAGGCTGGTGTCCACAT +
Preference number: 5 (lower is better)
Translates to: SRAQSPGLGLSLELPAPSVRPGS*AGWCPH
Trigger: ATGTGGACACCAGCCTGCCAAGGACCCTGGACGAAC...TGAAGGGGCTGGCAGCTCTAGACTCAAGCCGAGACCTGGTGACTGGGCCCTCGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS TCA 90 bp GGCTGCCCAGCGTGGATGGTGCCGCTCAGCACCCGGCCGAAGGCATaGAACTGGACTCCATCATCTGTGCTGTACATCTTCGTCGTGTGG +
Preference number: 5 (lower is better)
Translates to: GCPAWMVPLSTRPKA*NWTPSSVLYIFVVW
Trigger: CCACACGACGAAGATGTACAGCACAGATGATGGAGTCCAGTTTCATGCCTTCGGCCGGGTGCTGAGCGGCACCATCCACGCTGGGCAGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS GCA 90 bp TGTAGTTCTCCCCCAGCACCTTCACAGGCTGCCCAGCGTGGATGGTaGCGCTCAGCACCCGGCCGAAGGCATGAAACTGGACTCCATCAT +
Preference number: 5 (lower is better)
Translates to: CSSPPAPSQAAQRGW*RSAPGRRHETGLHH
Trigger: ATGATGGAGTCCAGTTTCATGCCTTCGGCCGGGTGCTGAGCGGCACCATCCACGCTGGGCAGCCTGTGAAGGTGCTGGGGGAGAACTACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CCA 90 bp TCGTCGTGTGGCACATCAGGGGACCATCTGGGTCACAGTCGCTCATaGCCTCGCCAAGGTCAGAGTCCACGCCGCCAGTGTAGGTATGCT +
Preference number: 5 (lower is better)
Translates to: SSCGTSGDHLGHSRS*PRQGQSPRRQCRYA
Trigger: AGCATACCTACACTGGCGGCGTGGACTCTGACCTTGGCGAGGCCATGAGCGACTGTGACCCAGATGGTCCCCTGATGTGCCACACGACGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS-3UTR CAA 90 bp GCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCCGAATGACAATGCTCTaGTCCAGAGGATCGCCTGGG +
Preference number: 5 (lower is better)
Translates to: ARCPFLTGMEVSGAFRRPRMTML*SRGSPG
Trigger: CCCAGGCGATCCTCTGGACAAGAGCATTGTCATTCG...GGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS TCA 90 bp ATGAGGAAGGCAGAGTACACTACCCTCCTGGCTGTGGGAATGATCTaGCCTCCACCCCGGTGGAGGGGTTCCTGGGCAACCACAGCATCC +
Preference number: 5 (lower is better)
Translates to: MRKAEYTTLLAVGMI*PPPRWRGSWATTAS
Trigger: GGATGCTGTGGTTGCCCAGGAACCCCTCCACCGGGGTGGAGGTCAGATCATTCCCACAGCCAGGAGGGTAGTGTACTCTGCCTTCCTCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000132543.2
ENSMUST00000173679.8
CDS-3UTR CAA 90 bp TCGAGGGCCCAGTCACCAGGTCTCGGCTTGAGTCTAGAGCTGCCAGCCCCTTCATGCTCGATCTTGGGTTaGGCGCCCACCTTTGGAGAT +
Preference number: 5 (lower is better)
Translates to: SRAQSPGLGLSLELPAPSCSILG*APTFGD
Trigger: ATCTCCAAAGGTGGGCGCCAAACCCAAGATCGAGCA...TGAAGGGGCTGGCAGCTCTAGACTCAAGCCGAGACCTGGTGACTGGGCCCTCGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CAA 90 bp GCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCGGGGTTCAGTTATGGTaGCTGTCTTCACGATCGGCT +
Preference number: 5 (lower is better)
Translates to: ARCPFLTGMEVSGAFRRPGVQLW*LSSRSA
Trigger: AGCCGATCGTGAAGACAGCAACCATAACTGAACCCC...GGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS GCA 90 bp TTGTCCTCATGCAGCACCACCTCCATGCCGGGGTGGTCATCCTCGTaGTCTCCCACGTCATCCTCGTCCTCGTCCTCATCCATCTCATCA +
Preference number: 5 (lower is better)
Translates to: LSSCSTTSMPGWSSS*SPTSSSSSSSSISS
Trigger: TGATGAGATGGATGAGGACGAGGACGAGGATGACGTGGGAGAGCACGAGGATGACCACCCCGGCATGGAGGTGGTGCTGCATGAGGACAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000173679.8
CDS GCA 90 bp CGCAGAGGGGTCCTTCCCTGGTCCCCCACTGGAAACCTTGAACAATaGTGTCCTTCACTGAGCCGAGAAGGGCCTTGTCTACCTCTGAGG +
Preference number: 5 (lower is better)
Translates to: RRGVLPWSPTGNLEQ*CPSLSREGPCLPLR
Trigger: CCTCAGAGGTAGACAAGGCCCTTCTCGGCTCAGTGAAGGACAGCATTGTTCAAGGTTTCCAGTGGGGGACCAGGGAAGGACCCCTCTGCG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CCA 90 bp CTGAGCAGGGGGCGGATGTTCAGCTTTAGCTCTTCCTTGGTGAGGTaGATGCCAAGTTCGTCCAGGGTCCTTGGCAGGCTGGTGTCCACA +
Preference number: 5 (lower is better)
Translates to: LSRGRMFSFSSSLVR*MPSSSRVLGRLVST
Trigger: TGTGGACACCAGCCTGCCAAGGACCCTGGACGAACTTGGCATCCACCTCACCAAGGAAGAGCTAAAGCTGAACATCCGCCCCCTGCTCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CCA 90 bp ATCTGTGCTGTACATCTTCGTCGTGTGGCACATCAGGGGACCATCTaGGTCACAGTCGCTCATGGCCTCGCCAAGGTCAGAGTCCACGCC +
Preference number: 5 (lower is better)
Translates to: ICAVHLRRVAHQGTI*VTVAHGLAKVRVHA
Trigger: GGCGTGGACTCTGACCTTGGCGAGGCCATGAGCGACTGTGACCCAGATGGTCCCCTGATGTGCCACACGACGAAGATGTACAGCACAGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CCA 90 bp GTCGATGGCCGGGATGAACGCTTTGATGGTATAGAGAGGGGAGCCTaGTATGGGTGCATCCTGAGTCACATGACCCCTGCGTCTGGCCAG +
Preference number: 5 (lower is better)
Translates to: VDGRDERFDGIERGA*YGCILSHMTPASGQ
Trigger: CTGGCCAGACGCAGGGGTCATGTGACTCAGGATGCACCCATACCAGGCTCCCCTCTCTATACCATCAAAGCGTTCATCCCGGCCATCGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS-3UTR CAA 90 bp TCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCCATAGCAGTTCCCGATTCCTGCACTGCGTGCTaGATCAGCCGCTCTGTGTTC +
Preference number: 5 (lower is better)
Translates to: SLGWRFLGRSDGPIAVPDSCTAC*ISRSVF
Trigger: GAACACAGAGCGGCTGATCAAGCACGCAGTGCAGGA...ATCGGGAACTGCTATGGGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CAA 90 bp CTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCCAGGCAAAGGCGTTTGGCGCCCACCTTaGGAGATGGAATGTGCTGCA +
Preference number: 5 (lower is better)
Translates to: LLWAQALLCSLGMGPGKGVWRPP*EMECAA
Trigger: TGCAGCACATTCCATCTCCAAAGGTGGGCGCCAAAC...GCCTTTGCCTGGCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS TCA 90 bp GCCCAGTCACCAGGTCTCGGCTTGAGTCTAGAGCTGCCAGCCCCTTaGTGTCGATCTCTGAGTACATCTTCCGCAGGTCGTGCATCACAC +
Preference number: 5 (lower is better)
Translates to: AQSPGLGLSLELPAP*CRSLSTSSAGRASH
Trigger: GTGTGATGCACGACCTGCGGAAGATGTACTCAGAGATCGACATCAAGGGGCTGGCAGCTCTAGACTCAAGCCGAGACCTGGTGACTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172611.2
CDS GCA 90 bp CGCTCAGCACCCGGCCGAAGGCATGAAACTGGACTCCATCATCTGTaGTGTACATCTTCGTCGTGTGGCACATCAGGGGACCATCTGGGT +
Preference number: 5 (lower is better)
Translates to: RSAPGRRHETGLHHL*CTSSSCGTSGDHLG
Trigger: ACCCAGATGGTCCCCTGATGTGCCACACGACGAAGATGTACAGCACAGATGATGGAGTCCAGTTTCATGCCTTCGGCCGGGTGCTGAGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CCA 90 bp CGCCAAGGTCAGAGTCCACGCCGCCAGTGTAGGTATGCTCGATCTTaGGTTTGGCGCCCACCTTTGGAGATGGAATGTGCTGCACACACA +
Preference number: 5 (lower is better)
Translates to: RQGQSPRRQCRYARS*VWRPPLEMECAAHT
Trigger: TGTGTGTGCAGCACATTCCATCTCCAAAGGTGGGCGCCAAACCCAAGATCGAGCATACCTACACTGGCGGCGTGGACTCTGACCTTGGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS-3UTR CAA 90 bp GAAACCAGGCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGCCGACGCCTCTCTCTaGTTCTGTGAAGAGGATGTC +
Preference number: 5 (lower is better)
Translates to: ETRPDAPSSLGWRFLGRSADASL*FCEEDV
Trigger: GACATCCTCTTCACAGAACAAGAGAGAGGCGTCGGC...TGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGCCTGGTTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CAA 90 bp GAAACCAGGCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGTTTGGCGCCCACCTTaGGAGATGGAATGTGCTGCA +
Preference number: 5 (lower is better)
Translates to: ETRPDAPSSLGWRFLGRSVWRPP*EMECAA
Trigger: TGCAGCACATTCCATCTCCAAAGGTGGGCGCCAAAC...TGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGCCTGGTTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CAA 90 bp TCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCCATAGCAGTTCCCGATTGCTCGATCTTGGGTTaGGCGCCCACCTTTGGAGAT +
Preference number: 5 (lower is better)
Translates to: SLGWRFLGRSDGPIAVPDCSILG*APTFGD
Trigger: ATCTCCAAAGGTGGGCGCCAAACCCAAGATCGAGCA...ATCGGGAACTGCTATGGGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CAA 90 bp CTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCCAGGCAAAGGCACTGGGTCAGCCACCTaGATGTCGATCTCTGAGTAC +
Preference number: 5 (lower is better)
Translates to: LLWAQALLCSLGMGPGKGTGSAT*MSISEY
Trigger: GTACTCAGAGATCGACATCAAGGTGGCTGACCCAGT...GCCTTTGCCTGGCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CAA 90 bp TCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCCATAGCAGTTCCCGATCGAATGACAATGCTCTaGTCCAGAGGATCGCCTGGG +
Preference number: 5 (lower is better)
Translates to: SLGWRFLGRSDGPIAVPDRMTML*SRGSPG
Trigger: CCCAGGCGATCCTCTGGACAAGAGCATTGTCATTCG...ATCGGGAACTGCTATGGGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS TCA 90 bp CATCACCCACCACCTGGGCCAGGATCTTATAGAGTGGCTCCAAGATaGACTCCACGAAGCTCCTCTGGGAGCTGCTGCTGGGAGCCTTTT +
Preference number: 5 (lower is better)
Translates to: HHPPPGPGSYRVAPR*TPRSSSGSCCWEPF
Trigger: AAAAGGCTCCCAGCAGCAGCTCCCAGAGGAGCTTCGTGGAGTTCATCTTGGAGCCACTCTATAAGATCCTGGCCCAGGTGGTGGGTGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS GCA 90 bp CGGGATGAACGCTTTGATGGTATAGAGAGGGGAGCCTGGTATGGGTaGATCCTGAGTCACATGACCCCTGCGTCTGGCCAGGACTGTGTA +
Preference number: 5 (lower is better)
Translates to: RDERFDGIERGAWYG*ILSHMTPASGQDCV
Trigger: TACACAGTCCTGGCCAGACGCAGGGGTCATGTGACTCAGGATGCACCCATACCAGGCTCCCCTCTCTATACCATCAAAGCGTTCATCCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS GCA 90 bp ACCCCTGCGTCTGGCCAGGACTGTGTAAACAGCAGACACACAATCTaGAGGAGCCTGGACCTCATGAGGAAGGCAGAGTACACTACCCTC +
Preference number: 5 (lower is better)
Translates to: TPASGQDCVNSRHTI*RSLDLMRKAEYTTL
Trigger: GAGGGTAGTGTACTCTGCCTTCCTCATGAGGTCCAGGCTCCTGCAGATTGTGTGTCTGCTGTTTACACAGTCCTGGCCAGACGCAGGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132543.2
CDS CCA 90 bp GGTCAGAGTCCACGCCGCCAGTGTAGGTATGCTCGATCTTGGGTTTaGCGCCCACCTTTGGAGATGGAATGTGCTGCACACACATGTCCA +
Preference number: 5 (lower is better)
Translates to: GQSPRRQCRYARSWV*RPPLEMECAAHTCP
Trigger: TGGACATGTGTGTGCAGCACATTCCATCTCCAAAGGTGGGCGCCAAACCCAAGATCGAGCATACCTACACTGGCGGCGTGGACTCTGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS-3UTR CAA 90 bp CTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCCAGGCAAAGGCAGCACAACATCCTGTTaGGCGAGCTCCAGCAACATA +
Preference number: 5 (lower is better)
Translates to: LLWAQALLCSLGMGPGKGSTTSC*ASSSNI
Trigger: TATGTTGCTGGAGCTCGCCAAACAGGATGTTGTGCT...GCCTTTGCCTGGCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CAA 90 bp CTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCCAGGCAAAGGCCTGATGAGCTCAGAGTaGTCCATCAGATCTGCTAAG +
Preference number: 5 (lower is better)
Translates to: LLWAQALLCSLGMGPGKGLMSSE*SIRSAK
Trigger: CTTAGCAGATCTGATGGACAACTCTGAGCTCATCAG...GCCTTTGCCTGGCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CAA 90 bp GTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCTGGAGAAGCAGACGTaGCCCAGGAGTGGAGAAAGG +
Preference number: 5 (lower is better)
Translates to: VLILLLWAQALLCSLGMGLEKQT*PRSGER
Trigger: CCTTTCTCCACTCCTGGGCAACGTCTGCTTCTCCAG...CCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CAA 90 bp TCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCCATAGCAGTTCCCGATGTCTCAGCAAAGCATTaGAGGGAGGACGTTTCTACC +
Preference number: 5 (lower is better)
Translates to: SLGWRFLGRSDGPIAVPDVSAKH*REDVST
Trigger: GGTAGAAACGTCCTCCCTCAAATGCTTTGCTGAGAC...ATCGGGAACTGCTATGGGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CAA 90 bp AAACCAGGCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGGTCTCAGCAAAGCATTaGAGGGAGGACGTTTCTACC +
Preference number: 5 (lower is better)
Translates to: KPGQMPLPHWDGGFWGVQVSAKH*REDVST
Trigger: GGTAGAAACGTCCTCCCTCAAATGCTTTGCTGAGAC...CTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGCCTGGTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CAA 90 bp TCGAGGGCCCAGTCACCAGGTCTCGGCTTGAGTCTAGAGCTGCCAGCCCCTTCAGATCCCAGTCGTACTTaGTTTGGAAAAACTCTCCCA +
Preference number: 5 (lower is better)
Translates to: SRAQSPGLGLSLELPAPSDPSRT*FGKTLP
Trigger: TGGGAGAGTTTTTCCAAACAAAGTACGACTGGGATC...TGAAGGGGCTGGCAGCTCTAGACTCAAGCCGAGACCTGGTGACTGGGCCCTCGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CAA 90 bp CCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCCATAGCAGTGGATCGTCGAAGAACTaGCTGATGCTCACATCTTCA +
Preference number: 5 (lower is better)
Translates to: PFLTGMEVSGAFRRPHSSGSSKN*LMLTSS
Trigger: TGAAGATGTGAGCATCAGCAAGTTCTTCGACGATCC...ACTGCTATGGGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS GCA 90 bp ACCCCTGCGTCTGGCCAGGACTGTGTAAACAGCAGACACACAATCTaGAGGAGCCTGGACCTCTACAAAGTAGTAAGGCTCCATCAGACG +
Preference number: 5 (lower is better)
Translates to: TPASGQDCVNSRHTI*RSLDLYKVVRLHQT
Trigger: CGTCTGATGGAGCCTTACTACTTTGTAGAGGTCCAGGCTCCTGCAGATTGTGTGTCTGCTGTTTACACAGTCCTGGCCAGACGCAGGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CCA 90 bp GCCGCCAGTGTAGGTATGCTCGATCTTGGGTTTGGCGCCCACCTTTaGAGATGGAATGTGCTGCACACACATGTCCACAAAGCCTGTGAA +
Preference number: 5 (lower is better)
Translates to: AASVGMLDLGFGAHL*RWNVLHTHVHKACE
Trigger: TTCACAGGCTTTGTGGACATGTGTGTGCAGCACATTCCATCTCCAAAGGTGGGCGCCAAACCCAAGATCGAGCATACCTACACTGGCGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS-3UTR CAA 90 bp AAACCAGGCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGATCAGCCGGTCGATTTaGTTGATACACACGGTGACT +
Preference number: 5 (lower is better)
Translates to: KPGQMPLPHWDGGFWGVQISRSI*LIHTVT
Trigger: AGTCACCGTGTGTATCAACAAAATCGACCGGCTGAT...CTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGCCTGGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS GCA 90 bp CCGGAAAATCTGAGCCTCCTCATTGCCTCGGGGTTCAGTTATGGTTaGTGTCTTCACGATCGGCTGGTCAACACCTTCAATCAGGACCCA +
Preference number: 5 (lower is better)
Translates to: PENLSLLIASGFSYG*CLHDRLVNTFNQDP
Trigger: TGGGTCCTGATTGAAGGTGTTGACCAGCCGATCGTGAAGACAGCAACCATAACTGAACCCCGAGGCAATGAGGAGGCTCAGATTTTCCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CCA 90 bp TCATTGCCTCGGGGTTCAGTTATGGTTGCTGTCTTCACGATCGGCTaGTCAACACCTTCAATCAGGACCCAGTTGCCAGCAGGAACACGA +
Preference number: 5 (lower is better)
Translates to: SLPRGSVMVAVFTIG*STPSIRTQLPAGTR
Trigger: TCGTGTTCCTGCTGGCAACTGGGTCCTGATTGAAGGTGTTGACCAGCCGATCGTGAAGACAGCAACCATAACTGAACCCCGAGGCAATGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CCA 90 bp AGGGCCGGAAAATCTGAGCCTCCTCATTGCCTCGGGGTTCAGTTATaGTTGCTGTCTTCACGATCGGCTGGTCAACACCTTCAATCAGGA +
Preference number: 5 (lower is better)
Translates to: RAGKSEPPHCLGVQL*LLSSRSAGQHLQSG
Trigger: TCCTGATTGAAGGTGTTGACCAGCCGATCGTGAAGACAGCAACCATAACTGAACCCCGAGGCAATGAGGAGGCTCAGATTTTCCGGCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS-3UTR CAA 90 bp CATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCCAGGTGTAATAAGCATCTGTaGGAGGCAGCTTCAGCTCCA +
Preference number: 5 (lower is better)
Translates to: HSSSLGPSSPLFLGNGARCNKHL*EAASAP
Trigger: TGGAGCTGAAGCTGCCTCCAACAGATGCTTATTACA...CCTGGCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CAA 90 bp TTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCCAGGCAAAGTGTAATAAGCATCTGTaGGAGGCAGCTTCAGCTCCA +
Preference number: 5 (lower is better)
Translates to: FFSGPKLSSVPWEWGQAKCNKHL*EAASAP
Trigger: TGGAGCTGAAGCTGCCTCCAACAGATGCTTATTACA...CTTTGCCTGGCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CAA 90 bp GCCAGATGCCCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCATGCTTATTAATCCATaGACCTCATCCACAATGTGT +
Preference number: 5 (lower is better)
Translates to: ARCPFLTGMEVSGAFRRPMLINP*TSSTMC
Trigger: ACACATTGTGGATGAGGTCAATGGATTAATAAGCAT...GGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGGGCATCTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CAA 90 bp ATCTTGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAAGTTCGTCCAGGGTCCTaGGCAGGCTGGTGTCCACAT +
Preference number: 5 (lower is better)
Translates to: ILFSFFFSGPKLSSVPWEVRPGS*AGWCPH
Trigger: ATGTGGACACCAGCCTGCCAAGGACCCTGGACGAAC...TTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACAAGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CAA 90 bp TTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCACTGGGTCAGCCACCTaGATGTCGATCTCTGAGTAC +
Preference number: 5 (lower is better)
Translates to: FSFFFSGPKLSSVPWEWGTGSAT*MSISEY
Trigger: GTACTCAGAGATCGACATCAAGGTGGCTGACCCAGT...GCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS TCA 90 bp TGTCACCAAAGGTGTCAGCGTAGATCTTGGCAAAGGAACCCAGTGTaGAGCAGATGCTGTACTGGGAACTGGAGAAGCAGACGTTGCCCA +
Preference number: 5 (lower is better)
Translates to: CHQRCQRRSWQRNPV*SRCCTGNWRSRRCP
Trigger: TGGGCAACGTCTGCTTCTCCAGTTCCCAGTACAGCATCTGCTTCACACTGGGTTCCTTTGCCAAGATCTACGCTGACACCTTTGGTGACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS-3UTR CAA 90 bp TGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGGGGTTCAGTTATGGTaGCTGTCTTCACGATCGGCT +
Preference number: 5 (lower is better)
Translates to: CSHSSSLGPSSPLFLGNGGVQLW*LSSRSA
Trigger: AGCCGATCGTGAAGACAGCAACCATAACTGAACCCC...CCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACA
52% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CAA 90 bp CATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCCAGGCCAGTCGTACTTTGTTaGGAAAAACTCTCCCAGCTT +
Preference number: 5 (lower is better)
Translates to: HSSSLGPSSPLFLGNGARPVVLC*EKLSQL
Trigger: AAGCTGGGAGAGTTTTTCCAAACAAAGTACGACTGG...CCTGGCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS GCA 90 bp TGCTCGATCTTGGGTTTGGCGCCCACCTTTGGAGATGGAATGTGCTaGACACACATGTCCACAAAGCCTGTGAACTCGCCAAAGAACTTT +
Preference number: 5 (lower is better)
Translates to: CSILGLAPTFGDGMC*THMSTKPVNSPKNF
Trigger: AAAGTTCTTTGGCGAGTTCACAGGCTTTGTGGACATGTGTGTGCAGCACATTCCATCTCCAAAGGTGGGCGCCAAACCCAAGATCGAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS-3UTR CAA 90 bp GTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCTGATGAGCTCAGAGTaGTCCATCAGATCTGCTAAG +
Preference number: 5 (lower is better)
Translates to: VLILLLWAQALLCSLGMGLMSSE*SIRSAK
Trigger: CTTAGCAGATCTGATGGACAACTCTGAGCTCATCAG...CCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CAA 90 bp TTCATCTTGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGCCGACGCCTCTCTCTaGTTCTGTGAAGAGGATGTC +
Preference number: 5 (lower is better)
Translates to: FILFSFFFSGPKLSSVPWADASL*FCEEDV
Trigger: GACATCCTCTTCACAGAACAAGAGAGAGGCGTCGGC...CCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACAAGATGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CAA 90 bp TTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCATCAGCCGGTCGATTTaGTTGATACACACGGTGACT +
Preference number: 5 (lower is better)
Translates to: FSFFFSGPKLSSVPWEWGISRSI*LIHTVT
Trigger: AGTCACCGTGTGTATCAACAAAATCGACCGGCTGAT...GCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CAA 90 bp CCCTTCCTCACTGGGATGGAGGTTTCTGGGGCGTTCAGACGGCCCCATAGCAGTATGCTTATTAATCCATaGACCTCATCCACAATGTGT +
Preference number: 5 (lower is better)
Translates to: PFLTGMEVSGAFRRPHSSMLINP*TSSTMC
Trigger: ACACATTGTGGATGAGGTCAATGGATTAATAAGCAT...ACTGCTATGGGGCCGTCTGAACGCCCCAGAAACCTCCATCCCAGTGAGGAAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CAA 90 bp GTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCTGCTGGGAGCCTTTTaGGTGAACTTTCTCGTCTTA +
Preference number: 5 (lower is better)
Translates to: VLILLLWAQALLCSLGMGLLGAF*VNFLVL
Trigger: TAAGACGAGAAAGTTCACCAAAAAGGCTCCCAGCAG...CCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CAA 90 bp TGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGAGCTTTAGCTCTTCCTaGGTGAGGTGGATGCCAAGT +
Preference number: 5 (lower is better)
Translates to: CSHSSSLGPSSPLFLGNGSFSSS*VRWMPS
Trigger: ACTTGGCATCCACCTCACCAAGGAAGAGCTAAAGCT...CCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CAA 90 bp TTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCCAGGCAAAGATAACAGATGTGGTATaGAATTTCAAGGGCCGGAAA +
Preference number: 5 (lower is better)
Translates to: FFSGPKLSSVPWEWGQAKITDVV*NFKGRK
Trigger: TTTCCGGCCCTTGAAATTCAATACCACATCTGTTAT...CTTTGCCTGGCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CAA 90 bp ATCTTGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAAAGGCCATCAAGCATTTaGGGCAGCTCTGAGGGGTTA +
Preference number: 5 (lower is better)
Translates to: ILFSFFFSGPKLSSVPWERPSSI*GSSEGL
Trigger: TAACCCCTCAGAGCTGCCCAAAATGCTTGATGGCCT...TTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACAAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CAA 90 bp TTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGCCCAGTCGTACTTTGTTaGGAAAAACTCTCCCAGCTT +
Preference number: 5 (lower is better)
Translates to: FSFFFSGPKLSSVPWEWGPVVLC*EKLSQL
Trigger: AAGCTGGGAGAGTTTTTCCAAACAAAGTACGACTGG...GCCCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CAA 90 bp TGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAATGGGGGATCGTCGAAGAACTaGCTGATGCTCACATCTTCA +
Preference number: 5 (lower is better)
Translates to: CSHSSSLGPSSPLFLGNGGSSKN*LMLTSS
Trigger: TGAAGATGTGAGCATCAGCAAGTTCTTCGACGATCC...CCCATTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CAA 90 bp ATCTTGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAAAGCACAACATCCTGTTaGGCGAGCTCCAGCAACATA +
Preference number: 5 (lower is better)
Translates to: ILFSFFFSGPKLSSVPWESTTSC*ASSSNI
Trigger: TATGTTGCTGGAGCTCGCCAAACAGGATGTTGTGCT...TTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACAAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CAA 90 bp CCTGAAGACAGGCCCCTTAGGGTTAAACATTTTCATCTTGTTCTCATTCTTCTTCTGGAGAAGCAGACGTaGCCCAGGAGTGGAGAAAGG +
Preference number: 5 (lower is better)
Translates to: PEDRPLRVKHFHLVLILLLEKQT*PRSGER
Trigger: CCTTTCTCCACTCCTGGGCAACGTCTGCTTCTCCAG...AAGAAGAATGAGAACAAGATGAAAATGTTTAACCCTAAGGGGCCTGTCTTCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CAA 90 bp TTCATCTTGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGCTGCTGGGAGCCTTTTaGGTGAACTTTCTCGTCTTA +
Preference number: 5 (lower is better)
Translates to: FILFSFFFSGPKLSSVPWLLGAF*VNFLVL
Trigger: TAAGACGAGAAAGTTCACCAAAAAGGCTCCCAGCAG...CCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACAAGATGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CAA 90 bp ATCTTGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGGAAGATCCCAGTCGTACTTaGTTTGGAAAAACTCTCCCA +
Preference number: 5 (lower is better)
Translates to: ILFSFFFSGPKLSSVPWEDPSRT*FGKTLP
Trigger: TGGGAGAGTTTTTCCAAACAAAGTACGACTGGGATC...TTCCCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACAAGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CAA 90 bp CCTGAAGACAGGCCCCTTAGGGTTAAACATTTTCATCTTGTTCTCATTCTTCTTAGCTTTAGCTCTTCCTaGGTGAGGTGGATGCCAAGT +
Preference number: 5 (lower is better)
Translates to: PEDRPLRVKHFHLVLILLSFSSS*VRWMPS
Trigger: ACTTGGCATCCACCTCACCAAGGAAGAGCTAAAGCT...AAGAAGAATGAGAACAAGATGAAAATGTTTAACCCTAAGGGGCCTGTCTTCAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS-3UTR CAA 90 bp TTCATCTTGTTCTCATTCTTCTTCTCTGGGCCCAAGCTCTCCTCTGTTCCTTGGATAACAGATGTGGTATaGAATTTCAAGGGCCGGAAA +
Preference number: 5 (lower is better)
Translates to: FILFSFFFSGPKLSSVPWITDVV*NFKGRK
Trigger: TTTCCGGCCCTTGAAATTCAATACCACATCTGTTAT...CCAAGGAACAGAGGAGAGCTTGGGCCCAGAGAAGAAGAATGAGAACAAGATGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
CDS GCA 90 bp AGATCTGCTAAGAAATCCATCTCATACACCGTGACGGGTAATGTCTaGTCCATCAGAGTGAATTTCTTGGTTTTCACTGGCTTTATAATG +
Preference number: 5 (lower is better)
Translates to: RSAKKSISYTVTGNV*SIRVNFLVFTGFIM
Trigger: CATTATAAAGCCAGTGAAAACCAAGAAATTCACTCTGATGGAGCAGACATTACCCGTCACGGTGTATGAGATGGATTTCTTAGCAGATCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS GCA 72 bp CCCCCAGCACCTTCACAGGCTGCCCAGCGTGGATGGTaGCGCTCAGCACCCGGCCGAAGGCATGAAACTGGA +
Preference number: 6 (lower is better)
Translates to: PPAPSQAAQRGW*RSAPGRRHETG
Trigger: TCCAGTTTCATGCCTTCGGCCGGGTGCTGAGCGGCACCATCCACGCTGGGCAGCCTGTGAAGGTGCTGGGGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CCA 72 bp TCTCCCCCAGCACCTTCACAGGCTGCCCAGCGTGGATaGTGCCGCTCAGCACCCGGCCGAAGGCATGAAACT +
Preference number: 6 (lower is better)
Translates to: SPPAPSQAAQRG*CRSAPGRRHET
Trigger: AGTTTCATGCCTTCGGCCGGGTGCTGAGCGGCACCATCCACGCTGGGCAGCCTGTGAAGGTGCTGGGGGAGA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS GCA 72 bp TGCAGCACCACCTCCATGCCGGGGTGGTCATCCTCGTaGTCTCCCACGTCATCCTCGTCCTCGTCCTCATCC +
Preference number: 6 (lower is better)
Translates to: CSTTSMPGWSSS*SPTSSSSSSSS
Trigger: GGATGAGGACGAGGACGAGGATGACGTGGGAGAGCACGAGGATGACCACCCCGGCATGGAGGTGGTGCTGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CCA 72 bp GGCACATCAGGGGACCATCTGGGTCACAGTCGCTCATaGCCTCGCCAAGGTCAGAGTCCACGCCGCCAGTGT +
Preference number: 6 (lower is better)
Translates to: GTSGDHLGHSRS*PRQGQSPRRQC
Trigger: ACACTGGCGGCGTGGACTCTGACCTTGGCGAGGCCATGAGCGACTGTGACCCAGATGGTCCCCTGATGTGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS TCA 72 bp GCAGAGTACACTACCCTCCTGGCTGTGGGAATGATCTaGCCTCCACCCCGGTGGAGGGGTTCCTGGGCAACC +
Preference number: 6 (lower is better)
Translates to: AEYTTLLAVGMI*PPPRWRGSWAT
Trigger: GGTTGCCCAGGAACCCCTCCACCGGGGTGGAGGTCAGATCATTCCCACAGCCAGGAGGGTAGTGTACTCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000132543.2
ENSMUST00000173679.8
CDS CCA 72 bp CTTGGTGAGGTGGATGCCAAGTTCGTCCAGGGTCCTTaGCAGGCTGGTGTCCACATCACCCACCACCTGGGC +
Preference number: 6 (lower is better)
Translates to: LGEVDAKFVQGP*QAGVHITHHLG
Trigger: GCCCAGGTGGTGGGTGATGTGGACACCAGCCTGCCAAGGACCCTGGACGAACTTGGCATCCACCTCACCAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CCA 72 bp TTCTTGTCCTCATGCAGCACCACCTCCATGCCGGGGTaGTCATCCTCGTGCTCTCCCACGTCATCCTCGTCC +
Preference number: 6 (lower is better)
Translates to: FLSSCSTTSMPG*SSSCSPTSSSS
Trigger: GGACGAGGATGACGTGGGAGAGCACGAGGATGACCACCCCGGCATGGAGGTGGTGCTGCATGAGGACAAGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CCA 72 bp TGGTCTCCACCTCGGGACCGTACACCTCCTCGGCCGTaGGGTAGTACTTCTTGTCCTCATGCAGCACCACCT +
Preference number: 6 (lower is better)
Translates to: WSPPRDRTPPRP*GSTSCPHAAPP
Trigger: AGGTGGTGCTGCATGAGGACAAGAAGTACTACCCCACGGCCGAGGAGGTGTACGGTCCCGAGGTGGAGACCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CAA 90 bp CAGACCAGCCTGAGCAGGGGGCGGATGTTCAGCTTTAGCTCTTCCTaGGTGAGGTGGATGCCAAGTTCGTCCAGGGTCCTTGGCAGGCTG +
Preference number: 6 (lower is better)
Translates to: QTSLSRGRMFSFSSS*VRWMPSSSRVLGRL
Trigger: CAGCCTGCCAAGGACCCTGGACGAACTTGGCATCCACCTCACCAAGGAAGAGCTAAAGCTGAACATCCGCCCCCTGCTCAGGCTGGTCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS TCA 72 bp CAGAGGGGTCCTTCCCTGGTCCCCCACTGGAAACCTTaGACAATGCTGTCCTTCACTGAGCCGAGAAGGGCC +
Preference number: 6 (lower is better)
Translates to: QRGPSLVPHWKP*TMLSFTEPRRA
Trigger: GGCCCTTCTCGGCTCAGTGAAGGACAGCATTGTTCAAGGTTTCCAGTGGGGGACCAGGGAAGGACCCCTCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS GCA 72 bp GGTCGTGCATCACACAGTCCAGGTAGAGCTCCCCAGTaGCCAGGATCACATGCTCGCCAGACTCTTCCACCT +
Preference number: 6 (lower is better)
Translates to: GRASHSPGRAPQ*PGSHARQTLPP
Trigger: AGGTGGAAGAGTCTGGCGAGCATGTGATCCTGGGCACTGGGGAGCTCTACCTGGACTGTGTGATGCACGACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CAA 90 bp GGCCCAGTCACCAGGTCTCGGCTTGAGTCTAGAGCTGCCAGCCCCTaGATGTCGATCTCTGAGTACATCTTCCGCAGGTCGTGCATCACA +
Preference number: 6 (lower is better)
Translates to: GPVTRSRLESRAASP*MSISEYIFRRSCIT
Trigger: TGTGATGCACGACCTGCGGAAGATGTACTCAGAGATCGACATCAAGGGGCTGGCAGCTCTAGACTCAAGCCGAGACCTGGTGACTGGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172611.2
CDS TCA 72 bp GCAGGGGGCGGATGTTCAGCTTTAGCTCTTCCTTGGTaGGGTGGATGCCAAGTTCGTCCAGGGTCCTTGGCA +
Preference number: 6 (lower is better)
Translates to: AGGGCSALALPW*GGCQVRPGSLA
Trigger: TGCCAAGGACCCTGGACGAACTTGGCATCCACCTCACCAAGGAAGAGCTAAAGCTGAACATCCGCCCCCTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS TCA 72 bp GCGTGGATGGTGCCGCTCAGCACCCGGCCGAAGGCATaGAACTGGACTCCATCATCTGTGCTGTACATCTTC +
Preference number: 6 (lower is better)
Translates to: AWMVPLSTRPKA*NWTPSSVLYIF
Trigger: GAAGATGTACAGCACAGATGATGGAGTCCAGTTTCATGCCTTCGGCCGGGTGCTGAGCGGCACCATCCACGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS GCA 72 bp GGTAGTACTTCTTGTCCTCATGCAGCACCACCTCCATaGCGGGGTGGTCATCCTCGTGCTCTCCCACGTCAT +
Preference number: 6 (lower is better)
Translates to: GSTSCPHAAPPP*RGGHPRALPRH
Trigger: ATGACGTGGGAGAGCACGAGGATGACCACCCCGGCATGGAGGTGGTGCTGCATGAGGACAAGAAGTACTACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS GCA 72 bp CGCTTTGATGGTATAGAGAGGGGAGCCTGGTATGGGTaGATCCTGAGTCACATGACCCCTGCGTCTGGCCAG +
Preference number: 6 (lower is better)
Translates to: RFDGIERGAWYG*ILSHMTPASGQ
Trigger: CTGGCCAGACGCAGGGGTCATGTGACTCAGGATGCACCCATACCAGGCTCCCCTCTCTATACCATCAAAGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CCA 72 bp GGGCGGATGTTCAGCTTTAGCTCTTCCTTGGTGAGGTaGATGCCAAGTTCGTCCAGGGTCCTTGGCAGGCTG +
Preference number: 6 (lower is better)
Translates to: GRMFSFSSSLVR*MPSSSRVLGRL
Trigger: CAGCCTGCCAAGGACCCTGGACGAACTTGGCATCCACCTCACCAAGGAAGAGCTAAAGCTGAACATCCGCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CCA 72 bp CCACGCCGCCAGTGTAGGTATGCTCGATCTTGGGTTTaGCGCCCACCTTTGGAGATGGAATGTGCTGCACAC +
Preference number: 6 (lower is better)
Translates to: PRRQCRYARSWV*RPPLEMECAAH
Trigger: GTGTGCAGCACATTCCATCTCCAAAGGTGGGCGCCAAACCCAAGATCGAGCATACCTACACTGGCGGCGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CCA 72 bp GTACATCTTCGTCGTGTGGCACATCAGGGGACCATCTaGGTCACAGTCGCTCATGGCCTCGCCAAGGTCAGA +
Preference number: 6 (lower is better)
Translates to: VHLRRVAHQGTI*VTVAHGLAKVR
Trigger: TCTGACCTTGGCGAGGCCATGAGCGACTGTGACCCAGATGGTCCCCTGATGTGCCACACGACGAAGATGTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CAA 90 bp AGGGCCTTGTCTACCTCTGAGGGCAGTGTATCATCTACTAGGATGTaGGGGCCTGTAGCATCAGGTCCGAAGGCCCAGATGGAACGGGCA +
Preference number: 6 (lower is better)
Translates to: RALSTSEGSVSSTRM*GPVASGPKAQMERA
Trigger: TGCCCGTTCCATCTGGGCCTTCGGACCTGATGCTACAGGCCCCAACATCCTAGTAGATGATACACTGCCCTCAGAGGTAGACAAGGCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS TCA 72 bp CCAGGTCTCGGCTTGAGTCTAGAGCTGCCAGCCCCTTaGTGTCGATCTCTGAGTACATCTTCCGCAGGTCGT +
Preference number: 6 (lower is better)
Translates to: PGLGLSLELPAP*CRSLSTSSAGR
Trigger: ACGACCTGCGGAAGATGTACTCAGAGATCGACATCAAGGGGCTGGCAGCTCTAGACTCAAGCCGAGACCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172611.2
CDS GCA 72 bp CCCGGCCGAAGGCATGAAACTGGACTCCATCATCTGTaGTGTACATCTTCGTCGTGTGGCACATCAGGGGAC +
Preference number: 6 (lower is better)
Translates to: PGRRHETGLHHL*CTSSSCGTSGD
Trigger: GTCCCCTGATGTGCCACACGACGAAGATGTACAGCACAGATGATGGAGTCCAGTTTCATGCCTTCGGCCGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS GCA 72 bp AGCCTGGTATGGGTGCATCCTGAGTCACATGACCCCTaGGTCTGGCCAGGACTGTGTAAACAGCAGACACAC +
Preference number: 6 (lower is better)
Translates to: SLVWVHPESHDP*VWPGLCKQQTH
Trigger: GTGTGTCTGCTGTTTACACAGTCCTGGCCAGACGCAGGGGTCATGTGACTCAGGATGCACCCATACCAGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CCA 72 bp CAGAGTCCACGCCGCCAGTGTAGGTATGCTCGATCTTaGGTTTGGCGCCCACCTTTGGAGATGGAATGTGCT +
Preference number: 6 (lower is better)
Translates to: QSPRRQCRYARS*VWRPPLEMECA
Trigger: AGCACATTCCATCTCCAAAGGTGGGCGCCAAACCCAAGATCGAGCATACCTACACTGGCGGCGTGGACTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CCA 72 bp CGGGATGAACGCTTTGATGGTATAGAGAGGGGAGCCTaGTATGGGTGCATCCTGAGTCACATGACCCCTGCG +
Preference number: 6 (lower is better)
Translates to: RDERFDGIERGA*YGCILSHMTPA
Trigger: CGCAGGGGTCATGTGACTCAGGATGCACCCATACCAGGCTCCCCTCTCTATACCATCAAAGCGTTCATCCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CAA 72 bp CTGAGCAGGGGGCGGATGTTCAGCTTTAGCTCTTCCTaGGTGAGGTGGATGCCAAGTTCGTCCAGGGTCCTT +
Preference number: 6 (lower is better)
Translates to: LSRGRMFSFSSS*VRWMPSSSRVL
Trigger: AAGGACCCTGGACGAACTTGGCATCCACCTCACCAAGGAAGAGCTAAAGCTGAACATCCGCCCCCTGCTCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CAA 72 bp ACCAGGTCTCGGCTTGAGTCTAGAGCTGCCAGCCCCTaGATGTCGATCTCTGAGTACATCTTCCGCAGGTCG +
Preference number: 6 (lower is better)
Translates to: TRSRLESRAASP*MSISEYIFRRS
Trigger: CGACCTGCGGAAGATGTACTCAGAGATCGACATCAAGGGGCTGGCAGCTCTAGACTCAAGCCGAGACCTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172611.2
CDS TCA 72 bp GACCTTGCGCAGGCCATCAAGCATTTTGGGCAGCTCTaGGGGGTTAACCGGCTCCACGGCAATCTTGATAAC +
Preference number: 6 (lower is better)
Translates to: DLAQAIKHFGQL*GVNRLHGNLDN
Trigger: GTTATCAAGATTGCCGTGGAGCCGGTTAACCCCTCAGAGCTGCCCAAAATGCTTGATGGCCTGCGCAAGGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS GCA 72 bp GTCCTTCCCTGGTCCCCCACTGGAAACCTTGAACAATaGTGTCCTTCACTGAGCCGAGAAGGGCCTTGTCTA +
Preference number: 6 (lower is better)
Translates to: VLPWSPTGNLEQ*CPSLSREGPCL
Trigger: TAGACAAGGCCCTTCTCGGCTCAGTGAAGGACAGCATTGTTCAAGGTTTCCAGTGGGGGACCAGGGAAGGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CCA 72 bp CACATCACCCACCACCTGGGCCAGGATCTTATAGAGTaGCTCCAAGATGAACTCCACGAAGCTCCTCTGGGA +
Preference number: 6 (lower is better)
Translates to: HITHHLGQDLIE*LQDELHEAPLG
Trigger: TCCCAGAGGAGCTTCGTGGAGTTCATCTTGGAGCCACTCTATAAGATCCTGGCCCAGGTGGTGGGTGATGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CCA 72 bp TGGACTCCATCATCTGTGCTGTACATCTTCGTCGTGTaGCACATCAGGGGACCATCTGGGTCACAGTCGCTC +
Preference number: 6 (lower is better)
Translates to: WTPSSVLYIFVV*HIRGPSGSQSL
Trigger: GAGCGACTGTGACCCAGATGGTCCCCTGATGTGCCACACGACGAAGATGTACAGCACAGATGATGGAGTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CAA 90 bp CCCAGTGTGAAGCAGATGCTGTACTGGGAACTGGAGAAGCAGACGTaGCCCAGGAGTGGAGAAAGGATCAGGTTCTCGTCGGTGGAATAC +
Preference number: 6 (lower is better)
Translates to: PSVKQMLYWELEKQT*PRSGERIRFSSVEY
Trigger: GTATTCCACCGACGAGAACCTGATCCTTTCTCCACTCCTGGGCAACGTCTGCTTCTCCAGTTCCCAGTACAGCATCTGCTTCACACTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CAA 90 bp GCCGGAAAATCTGAGCCTCCTCATTGCCTCGGGGTTCAGTTATGGTaGCTGTCTTCACGATCGGCTGGTCAACACCTTCAATCAGGACCC +
Preference number: 6 (lower is better)
Translates to: AGKSEPPHCLGVQLW*LSSRSAGQHLQSGP
Trigger: GGGTCCTGATTGAAGGTGTTGACCAGCCGATCGTGAAGACAGCAACCATAACTGAACCCCGAGGCAATGAGGAGGCTCAGATTTTCCGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS GCA 72 bp TTGGGTTTGGCGCCCACCTTTGGAGATGGAATGTGCTaGACACACATGTCCACAAAGCCTGTGAACTCGCCA +
Preference number: 6 (lower is better)
Translates to: LGLAPTFGDGMC*THMSTKPVNSP
Trigger: TGGCGAGTTCACAGGCTTTGTGGACATGTGTGTGCAGCACATTCCATCTCCAAAGGTGGGCGCCAAACCCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS GCA 72 bp TCTGGCCAGGACTGTGTAAACAGCAGACACACAATCTaGAGGAGCCTGGACCTCATGAGGAAGGCAGAGTAC +
Preference number: 6 (lower is better)
Translates to: SGQDCVNSRHTI*RSLDLMRKAEY
Trigger: GTACTCTGCCTTCCTCATGAGGTCCAGGCTCCTGCAGATTGTGTGTCTGCTGTTTACACAGTCCTGGCCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132543.2
CDS CCA 72 bp CGGGGTTCAGTTATGGTTGCTGTCTTCACGATCGGCTaGTCAACACCTTCAATCAGGACCCAGTTGCCAGCA +
Preference number: 6 (lower is better)
Translates to: RGSVMVAVFTIG*STPSIRTQLPA
Trigger: TGCTGGCAACTGGGTCCTGATTGAAGGTGTTGACCAGCCGATCGTGAAGACAGCAACCATAACTGAACCCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CCA 72 bp ATGCTCGCCAGACTCTTCCACCTTGGTGGTGAGAGATaGATAGCTCTTGTTGACCTTGCGCAGGCCATCAAG +
Preference number: 6 (lower is better)
Translates to: MLARLFHLGGER*IALVDLAQAIK
Trigger: CTTGATGGCCTGCGCAAGGTCAACAAGAGCTATCCATCTCTCACCACCAAGGTGGAAGAGTCTGGCGAGCAT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CAA 72 bp ATGTCCACAAAGCCTGTGAACTCGCCAAAGAACTTTTaGCAGACCAGCCTGAGCAGGGGGCGGATGTTCAGC +
Preference number: 6 (lower is better)
Translates to: MSTKPVNSPKNF*QTSLSRGRMFS
Trigger: GCTGAACATCCGCCCCCTGCTCAGGCTGGTCTGCAAAAAGTTCTTTGGCGAGTTCACAGGCTTTGTGGACAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CAA 90 bp CGGTGGAGGGGTTCCTGGGCAACCACAGCATCCAGTATCTTAAACTaGACATTCCGAATCAATTCATCGCAGAGGGGTCCTTCCCTGGTC +
Preference number: 6 (lower is better)
Translates to: RWRGSWATTASSILN*TFRINSSQRGPSLV
Trigger: GACCAGGGAAGGACCCCTCTGCGATGAATTGATTCGGAATGTCAAGTTTAAGATACTGGATGCTGTGGTTGCCCAGGAACCCCTCCACCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000132543.2
ENSMUST00000173679.8
CDS TCA 72 bp TGTCACAACTGGGTCAGCCACCTTGATGTCGATCTCTaGGTACATCTTCCGCAGGTCGTGCATCACACAGTC +
Preference number: 6 (lower is better)
Translates to: CHNWVSHLDVDL*VHLPQVVHHTV
Trigger: GACTGTGTGATGCACGACCTGCGGAAGATGTACTCAGAGATCGACATCAAGGTGGCTGACCCAGTTGTGACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS GCA 72 bp CTGAGCCTCCTCATTGCCTCGGGGTTCAGTTATGGTTaGTGTCTTCACGATCGGCTGGTCAACACCTTCAAT +
Preference number: 6 (lower is better)
Translates to: LSLLIASGFSYG*CLHDRLVNTFN
Trigger: ATTGAAGGTGTTGACCAGCCGATCGTGAAGACAGCAACCATAACTGAACCCCGAGGCAATGAGGAGGCTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CCA 72 bp CATTCCGAATCAATTCATCGCAGAGGGGTCCTTCCCTaGTCCCCCACTGGAAACCTTGAACAATGCTGTCCT +
Preference number: 6 (lower is better)
Translates to: HSESIHRRGVLP*SPTGNLEQCCP
Trigger: AGGACAGCATTGTTCAAGGTTTCCAGTGGGGGACCAGGGAAGGACCCCTCTGCGATGAATTGATTCGGAATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000132543.2
ENSMUST00000173679.8
CDS CAA 72 bp TCTGAGCCTCCTCATTGCCTCGGGGTTCAGTTATGGTaGCTGTCTTCACGATCGGCTGGTCAACACCTTCAA +
Preference number: 6 (lower is better)
Translates to: SEPPHCLGVQLW*LSSRSAGQHLQ
Trigger: TTGAAGGTGTTGACCAGCCGATCGTGAAGACAGCAACCATAACTGAACCCCGAGGCAATGAGGAGGCTCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CAA 90 bp ACATCCTGTTTGGCGAGCTCCAGCAACATAGGATCGTCGAAGAACTaGCTGATGCTCACATCTTCACTCAGGCCCTTCCTACGACGGGTT +
Preference number: 6 (lower is better)
Translates to: TSCLASSSNIGSSKN*LMLTSSLRPFLRRV
Trigger: AACCCGTCGTAGGAAGGGCCTGAGTGAAGATGTGAGCATCAGCAAGTTCTTCGACGATCCTATGTTGCTGGAGCTCGCCAAACAGGATGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS TCA 72 bp AGGTGTCAGCGTAGATCTTGGCAAAGGAACCCAGTGTaGAGCAGATGCTGTACTGGGAACTGGAGAAGCAGA +
Preference number: 6 (lower is better)
Translates to: RCQRRSWQRNPV*SRCCTGNWRSR
Trigger: TCTGCTTCTCCAGTTCCCAGTACAGCATCTGCTTCACACTGGGTTCCTTTGCCAAGATCTACGCTGACACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS TCA 72 bp CAGCAAGGCCCTTCTCAAGGGGCTCGGCAATCATGGTaGTCTTGTTCTTCTTATTGGGTGTCTCAGCAAAGC +
Preference number: 6 (lower is better)
Translates to: QQGPSQGARQSW*SCSSYWVSQQS
Trigger: GCTTTGCTGAGACACCCAATAAGAAGAACAAGATCACCATGATTGCCGAGCCCCTTGAGAAGGGCCTTGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS TCA 72 bp TGTCAGTATAGCATAGGTCTTGGTCATAGCGCTTTCTaGTTTCCGGATGCGTCTTGCCGTGGTGGAGATGGC +
Preference number: 6 (lower is better)
Translates to: CQYSIGLGHSAF*FPDASCRGGDG
Trigger: GCCATCTCCACCACGGCAAGACGCATCCGGAAATCAGAAAGCGCTATGACCAAGACCTATGCTATACTGACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173679.8
CDS GCA 72 bp TCTGGCCAGGACTGTGTAAACAGCAGACACACAATCTaGAGGAGCCTGGACCTCTACAAAGTAGTAAGGCTC +
Preference number: 6 (lower is better)
Translates to: SGQDCVNSRHTI*RSLDLYKVVRL
Trigger: GAGCCTTACTACTTTGTAGAGGTCCAGGCTCCTGCAGATTGTGTGTCTGCTGTTTACACAGTCCTGGCCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CCA 72 bp GTAGGTATGCTCGATCTTGGGTTTGGCGCCCACCTTTaGAGATGGAATGTGCTGCACACACATGTCCACAAA +
Preference number: 6 (lower is better)
Translates to: VGMLDLGFGAHL*RWNVLHTHVHK
Trigger: TTTGTGGACATGTGTGTGCAGCACATTCCATCTCCAAAGGTGGGCGCCAAACCCAAGATCGAGCATACCTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CCA 72 bp AAATCTGAGCCTCCTCATTGCCTCGGGGTTCAGTTATaGTTGCTGTCTTCACGATCGGCTGGTCAACACCTT +
Preference number: 6 (lower is better)
Translates to: KSEPPHCLGVQL*LLSSRSAGQHL
Trigger: AAGGTGTTGACCAGCCGATCGTGAAGACAGCAACCATAACTGAACCCCGAGGCAATGAGGAGGCTCAGATTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CAA 72 bp TGTAGGTATGCTCGATCTTGGGTTTGGCGCCCACCTTaGGAGATGGAATGTGCTGCACACACATGTCCACAA +
Preference number: 6 (lower is better)
Translates to: CRYARSWVWRPP*EMECAAHTCPQ
Trigger: TTGTGGACATGTGTGTGCAGCACATTCCATCTCCAAAGGTGGGCGCCAAACCCAAGATCGAGCATACCTACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CAA 72 bp TTGGCGAGCTCCAGCAACATAGGATCGTCGAAGAACTaGCTGATGCTCACATCTTCACTCAGGCCCTTCCTA +
Preference number: 6 (lower is better)
Translates to: LASSSNIGSSKN*LMLTSSLRPFL
Trigger: TAGGAAGGGCCTGAGTGAAGATGTGAGCATCAGCAAGTTCTTCGACGATCCTATGTTGCTGGAGCTCGCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CAA 90 bp CCACGTCATCCTCGTCCTCGTCCTCATCCATCTCATCAAGATCTTTaGTCTCTCTTCCCAGTTCATCATCATCTTCATCAGAATCAAGCT +
Preference number: 6 (lower is better)
Translates to: PRHPRPRPHPSHQDL*SLFPVHHHLHQNQA
Trigger: AGCTTGATTCTGATGAAGATGATGATGAACTGGGAAGAGAGACAAAAGATCTTGATGAGATGGATGAGGACGAGGACGAGGATGACGTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021306.14
ENSMUST00000173679.8
CDS CAA 90 bp ATCATGGTGATCTTGTTCTTCTTATTGGGTGTCTCAGCAAAGCATTaGAGGGAGGACGTTTCTACCACTGTCTCACAGAATGTCACAACT +
Preference number: 6 (lower is better)
Translates to: IMVILFFLLGVSAKH*REDVSTTVSQNVTT
Trigger: AGTTGTGACATTCTGTGAGACAGTGGTAGAAACGTCCTCCCTCAAATGCTTTGCTGAGACACCCAATAAGAAGAACAAGATCACCATGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS TCA 72 bp GGTTCTCGTCGGTGGAATACATGCTTATTAATCCATTaGCCTCATCCACAATGTGTCGCAGCTTGTAATAAG +
Preference number: 6 (lower is better)
Translates to: GSRRWNTCLLIH*PHPQCVAACNK
Trigger: CTTATTACAAGCTGCGACACATTGTGGATGAGGTCAATGGATTAATAAGCATGTATTCCACCGACGAGAACC
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8
CDS CAA 72 bp ATCTTGTTCTTCTTATTGGGTGTCTCAGCAAAGCATTaGAGGGAGGACGTTTCTACCACTGTCTCACAGAAT +
Preference number: 6 (lower is better)
Translates to: ILFFLLGVSAKH*REDVSTTVSQN
Trigger: ATTCTGTGAGACAGTGGTAGAAACGTCCTCCCTCAAATGCTTTGCTGAGACACCCAATAAGAAGAACAAGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021306.14
ENSMUST00000107060.8
ENSMUST00000173679.8