RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for EFR3A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000015002

Ensembl transcript IDs: ENSMUST00000015146.16, ENSMUST00000172756.2, ENSMUST00000173858.8, ENSMUST00000174856.7, ENSMUST00000211878.2, ENSMUST00000227340.2

Found 241 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGAGAAGTGAGAGAGACTGAGTATGAGAGCTCAGGGAAGATTCAGTaGCACTACGGAAGCAGCAGAACGCACAGGATCACAAGCATCGGA +
Preference number: 1 (lower is better)
Translates to: REVRETEYESSGKIQ*HYGSSRTHRITSIG
Trigger: TCCGATGCTTGTGATCCTGTGCGTTCTGCTGCTTCCGTAGTGTCACTGAATCTTCCCTGAGCTCTCATACTCAGTCTCTCTCACTTCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
3UTR CCA 90 bp TCCTGCTCTCTACCAAGAGAACAGGAAAGGGAAAAAGGTTCGGAGTaGTGGTGCACACCTTTAATCCCAGCACTCAGCAAGCAGAGACAA +
Preference number: 1 (lower is better)
Translates to: SCSLPREQEREKGSE*WCTPLIPALSKQRQ
Trigger: TTGTCTCTGCTTGCTGAGTGCTGGGATTAAAGGTGTGCACCACCACTCCGAACCTTTTTCCCTTTCCTGTTCTCTTGGTAGAGAGCAGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000172756.2
3UTR GCA 90 bp TCTCTACCAAGAGAACAGGAAAGGGAAAAAGGTTCGGAGTGGTGGTaGACACCTTTAATCCCAGCACTCAGCAAGCAGAGACAAGAGGAT +
Preference number: 1 (lower is better)
Translates to: SLPREQEREKGSEWW*TPLIPALSKQRQED
Trigger: ATCCTCTTGTCTCTGCTTGCTGAGTGCTGGGATTAAAGGTGTGCACCACCACTCCGAACCTTTTTCCCTTTCCTGTTCTCTTGGTAGAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000172756.2
3UTR TCA 90 bp CACATGTTACTATGGAGGACTGAAGGGACGTGTGCACAGTCCATCTaGAGCACGGATTTAGAAAGCAGGAGAGAATTTGCAACCCTAAAA +
Preference number: 1 (lower is better)
Translates to: HMLLWRTEGTCAQSI*STDLESRREFATLK
Trigger: TTTTAGGGTTGCAAATTCTCTCCTGCTTTCTAAATCCGTGCTTCAGATGGACTGTGCACACGTCCCTTCAGTCCTCCATAGTAACATGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
3UTR CCA 90 bp TGTGATCCCTGCAAATGTGGAAGAATCAGACAAACATCCATTGTTTaGGAACCCTTGTCAATAAAACCAGTTGGGTCTAATGGGCCTAAG +
Preference number: 1 (lower is better)
Translates to: CDPCKCGRIRQTSIV*EPLSIKPVGSNGPK
Trigger: CTTAGGCCCATTAGACCCAACTGGTTTTATTGACAAGGGTTCCCAAACAATGGATGTTTGTCTGATTCTTCCACATTTGCAGGGATCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
3UTR TCA 90 bp AATAAGGACTCTGAATTTCAACCACTTTCATCTTGCACATTCAGTTaGATACTGTATGTTCTAACAATGGAAGGCTGTTTCATGAGCATC +
Preference number: 1 (lower is better)
Translates to: NKDSEFQPLSSCTFS*ILYVLTMEGCFMSI
Trigger: GATGCTCATGAAACAGCCTTCCATTGTTAGAACATACAGTATTCAACTGAATGTGCAAGATGAAAGTGGTTGAAATTCAGAGTCCTTATT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172756.2
3UTR-3UTR TCA 90 bp CAGAACAAAAACCCCTGGCCTCCTGTCCTGCTCTCTACCAAGAGAACAGGAAAGACAAGAGGATCTCTCTaGGCTCATGCCAGCCTCGTC +
Preference number: 2 (lower is better)
Translates to: QNKNPWPPVLLSTKRTGKTRGSL*AHASLV
Trigger: GACGAGGCTGGCATGAGCTCAGAGAGATCCTCTTGT...CTTTCCTGTTCTCTTGGTAGAGAGCAGGACAGGAGGCCAGGGGTTTTTGTTCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000172756.2
3UTR-3UTR GCA 90 bp GCGACATATCCCTGGTGTGAGGGAAGCTACAGTGCGAGCTCGCACAGGGCACTGGAAATGCATAGACTCTaGATAGGTGAACTGGTAGCT +
Preference number: 2 (lower is better)
Translates to: ATYPWCEGSYSASSHRALEMHRL*IGELVA
Trigger: AGCTACCAGTTCACCTATGCAGAGTCTATGCATTTC...CAGTGCCCTGTGCGAGCTCGCACTGTAGCTTCCCTCACACCAGGGATATGTCGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
3UTR-3UTR CCA 90 bp GCACTCAGCAAGCAGAGACAAGAGGATCTCTCTGAGCTCATGCCAGCCTCGTCTAGGCAGAGGAGGAAATaGGTCACTCTGGACGAGAAT +
Preference number: 2 (lower is better)
Translates to: ALSKQRQEDLSELMPASSRQRRK*VTLDEN
Trigger: ATTCTCGTCCAGAGTGACCCATTTCCTCCTCTGCCT...AGACGAGGCTGGCATGAGCTCAGAGAGATCCTCTTGTCTCTGCTTGCTGAGTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172756.2
3UTR-3UTR TCA 90 bp AATGAAGTCATCCAGGAGCGAACCCTGAGTGAAGTGAGGACAAAGCTGAACACGGCGGATCACAGGAACTaGAACAGGCAGAGGAGGAAA +
Preference number: 2 (lower is better)
Translates to: NEVIQERTLSEVRTKLNTADHRN*NRQRRK
Trigger: TTTCCTCCTCTGCCTGTTTCAGTTCCTGTGATCCGC...CGTGTTCAGCTTTGTCCTCACTTCACTCAGGGTTCGCTCCTGGATGACTTCATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172756.2
3UTR-3UTR TCA 90 bp TCAGAACAAAAACCCCTGGCCTCCTGTCCTGCTCTCTACCAAGAGAACAGGAAAGGAGCGAACCCTGAGTaGAGTGAGGACAAAGCTGAA +
Preference number: 2 (lower is better)
Translates to: SEQKPLASCPALYQENRKGANPE*SEDKAE
Trigger: TTCAGCTTTGTCCTCACTTCACTCAGGGTTCGCTCC...TTTCCTGTTCTCTTGGTAGAGAGCAGGACAGGAGGCCAGGGGTTTTTGTTCTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000172756.2
3UTR-3UTR GCA 90 bp AGTGCTCAGAACAAAAACCCCTGGCCTCCTGTCCTGCTCTCTACCAAGAGAACAATCTCTCTGAGCTCATaGCAGCCTCGTCTACAAAGC +
Preference number: 2 (lower is better)
Translates to: SAQNKNPWPPVLLSTKRTISLSS*QPRLQS
Trigger: GCTTTGTAGACGAGGCTGGCATGAGCTCAGAGAGAT...TGTTCTCTTGGTAGAGAGCAGGACAGGAGGCCAGGGGTTTTTGTTCTGAGCACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000172756.2
3UTR-3UTR TCA 90 bp GGTGGTGTCCCTAGCATGTGCAGTACATATCGCTCTTGTAGTCTTACAAGTCTCATCACAAGACCAGCATaGTCTGGCCAGTTTCCAGAG +
Preference number: 2 (lower is better)
Translates to: GGVPSMCSTYRSCSLTSLITRPA*SGQFPE
Trigger: CTCTGGAAACTGGCCAGATCATGCTGGTCTTGTGAT...GAGACTTGTAAGACTACAAGAGCGATATGTACTGCACATGCTAGGGACACCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
3UTR-3UTR TCA 90 bp ACAGCACAGCTTGCACACGCATCCAAATGTGATCCCTGCAAATGTGGAAGAATCACACTATGCAAATCCTaGAACTCATCTTGGCCCTGT +
Preference number: 2 (lower is better)
Translates to: TAQLAHASKCDPCKCGRITLCKS*NSSWPC
Trigger: ACAGGGCCAAGATGAGTTTCAGGATTTGCATAGTGT...GATTCTTCCACATTTGCAGGGATCACATTTGGATGCGTGTGCAAGCTGTGCTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
3UTR-3UTR TCA 90 bp GAGAGACTGAGTATGAGAGCTCAGGGAAGATTCAGTGACACTACGGAAGCAGCAACTTCTAATACAGCATaGCAAGTGTTGGTAGAGACA +
Preference number: 2 (lower is better)
Translates to: ERLSMRAQGRFSDTTEAATSNTA*QVLVET
Trigger: TGTCTCTACCAACACTTGTCATGCTGTATTAGAAGT...TGCTGCTTCCGTAGTGTCACTGAATCTTCCCTGAGCTCTCATACTCAGTCTCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
3UTR-3UTR TCA 90 bp GAGAGACTGAGTATGAGAGCTCAGGGAAGATTCAGTGACACTACGGAAGCAGCACCCAAGATACAGGTATaGGAAAAGACTAACTGCAAT +
Preference number: 2 (lower is better)
Translates to: ERLSMRAQGRFSDTTEAAPKIQV*EKTNCN
Trigger: ATTGCAGTTAGTCTTTTCTCATACCTGTATCTTGGG...TGCTGCTTCCGTAGTGTCACTGAATCTTCCCTGAGCTCTCATACTCAGTCTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
3UTR-3UTR TCA 90 bp CGTGTGGTGGTGTCCCTAGCATGTGCAGTACATATCGCTCTTGTAGTCTTACAACTCAAGAGCTTAACCTaGAGCAGAAAACATAGTATC +
Preference number: 2 (lower is better)
Translates to: RVVVSLACAVHIALVVLQLKSLT*SRKHSI
Trigger: GATACTATGTTTTCTGCTTCAGGTTAAGCTCTTGAG...TTGTAAGACTACAAGAGCGATATGTACTGCACATGCTAGGGACACCACCACACG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
3UTR-3UTR GCA 90 bp GAGAGACTGAGTATGAGAGCTCAGGGAAGATTCAGTGACACTACGGAAGCAGCAAAGGTCCTTTTAAAATaGTGTAGTCTTCATGAGCCA +
Preference number: 2 (lower is better)
Translates to: ERLSMRAQGRFSDTTEAAKVLLK*CSLHEP
Trigger: TGGCTCATGAAGACTACAGCATTTTAAAAGGACCTT...TGCTGCTTCCGTAGTGTCACTGAATCTTCCCTGAGCTCTCATACTCAGTCTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
3UTR-3UTR GCA 90 bp GGTGGTGTCCCTAGCATGTGCAGTACATATCGCTCTTGTAGTCTTACAAGTCTCACATATGAGAAACACTaGACCTTTTCCCACTCTAAG +
Preference number: 2 (lower is better)
Translates to: GGVPSMCSTYRSCSLTSLTYEKH*TFSHSK
Trigger: CTTAGAGTGGGAAAAGGTGCAGTGTTTCTCATATGT...GAGACTTGTAAGACTACAAGAGCGATATGTACTGCACATGCTAGGGACACCACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
3UTR-3UTR GCA 90 bp ACAGCACAGCTTGCACACGCATCCAAATGTGATCCCTGCAAATGTGGAAGAATCGCAAAGCTTGTGTTCTaGATGAATGCAAGTGAATAT +
Preference number: 2 (lower is better)
Translates to: TAQLAHASKCDPCKCGRIAKLVF*MNASEY
Trigger: ATATTCACTTGCATTCATGCAGAACACAAGCTTTGC...GATTCTTCCACATTTGCAGGGATCACATTTGGATGCGTGTGCAAGCTGTGCTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
3UTR CAA 90 bp AAAGGCAACTCACTCATACACCTTAGCAAGAACACACAGACTGTTTaGAAGTATGTAACTAATCTTCATAGAGATGCATACAAGTTTTGG +
Preference number: 2 (lower is better)
Translates to: KGNSLIHLSKNTQTV*KYVTNLHRDAYKFW
Trigger: CCAAAACTTGTATGCATCTCTATGAAGATTAGTTACATACTTCAAAACAGTCTGTGTGTTCTTGCTAAGGTGTATGAGTGAGTTGCCTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
3UTR CCA 72 bp AAGGGGGAGGGGACCCGATTCCCGCCGAATAATCTCTaGTCCAGTAGAAAGGTGCACGTGTGTGGCTCCGCA +
Preference number: 3 (lower is better)
Translates to: KGEGTRFPPNNL*SSRKVHVCGSA
Trigger: TGCGGAGCCACACACGTGCACCTTTCTACTGGACCAGAGATTATTCGGCGGGAATCGGGTCCCCTCCCCCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000227340.2
3UTR-3UTR CAA 90 bp GCGACATATCCCTGGTGTGAGGGAAGCTACAGTGCGAGCTCGCACAGGGCACTGGCTGCGTTGTCCTTCTaGAGAACAAGGTCTGGTGTA +
Preference number: 3 (lower is better)
Translates to: ATYPWCEGSYSASSHRALAALSF*RTRSGV
Trigger: TACACCAGACCTTGTTCTCAAGAAGGACAACGCAGC...CAGTGCCCTGTGCGAGCTCGCACTGTAGCTTCCCTCACACCAGGGATATGTCGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
3UTR GCA 72 bp CGAGCTCGCACAGGGCACTGGTCTTCCAGTGGCAGCTaGGTTGTCCTTCTTGAGAACAAGGTCTGGTGTATC +
Preference number: 3 (lower is better)
Translates to: RARTGHWSSSGS*VVLLENKVWCI
Trigger: GATACACCAGACCTTGTTCTCAAGAAGGACAACGCAGCTGCCACTGGAAGACCAGTGCCCTGTGCGAGCTCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
3UTR-3UTR CAA 90 bp GCGACATATCCCTGGTGTGAGGGAAGCTACAGTGCGAGCTCGCACAGGGCACTGATCCTGAAACTCATCTaGGCCCTGTTTTGCAGGCTT +
Preference number: 3 (lower is better)
Translates to: ATYPWCEGSYSASSHRALILKLI*ALFCRL
Trigger: AAGCCTGCAAAACAGGGCCAAGATGAGTTTCAGGAT...CAGTGCCCTGTGCGAGCTCGCACTGTAGCTTCCCTCACACCAGGGATATGTCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
3UTR TCA 72 bp ATGAGGTTTTCCTTAGCTGGCGACATATCCCTGGTGTaGGGGAAGCTACAGTGCGAGCTCGCACAGGGCACT +
Preference number: 3 (lower is better)
Translates to: MRFSLAGDISLV*GKLQCELAQGT
Trigger: AGTGCCCTGTGCGAGCTCGCACTGTAGCTTCCCTCACACCAGGGATATGTCGCCAGCTAAGGAAAACCTCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
3UTR TCA 72 bp CCCAGCACTCAGCAAGCAGAGACAAGAGGATCTCTCTaGGCTCATGCCAGCCTCGTCTACAAAGCAAAAAGC +
Preference number: 3 (lower is better)
Translates to: PSTQQAETRGSL*AHASLVYKAKS
Trigger: GCTTTTTGCTTTGTAGACGAGGCTGGCATGAGCTCAGAGAGATCCTCTTGTCTCTGCTTGCTGAGTGCTGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000172756.2
3UTR TCA 72 bp AGAGAGACTGAGTATGAGAGCTCAGGGAAGATTCAGTaGCACTACGGAAGCAGCAGAACGCACAGGATCACA +
Preference number: 3 (lower is better)
Translates to: RETEYESSGKIQ*HYGSSRTHRIT
Trigger: TGTGATCCTGTGCGTTCTGCTGCTTCCGTAGTGTCACTGAATCTTCCCTGAGCTCTCATACTCAGTCTCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
3UTR CCA 72 bp AAAAGGGAACCGAAAGTGCATGAGGTTTTCCTTAGCTaGCGACATATCCCTGGTGTGAGGGAAGCTACAGTG +
Preference number: 3 (lower is better)
Translates to: KREPKVHEVFLS*RHIPGVREATV
Trigger: CACTGTAGCTTCCCTCACACCAGGGATATGTCGCCAGCTAAGGAAAACCTCATGCACTTTCGGTTCCCTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
3UTR TCA 72 bp CTATGGAGGACTGAAGGGACGTGTGCACAGTCCATCTaGAGCACGGATTTAGAAAGCAGGAGAGAATTTGCA +
Preference number: 3 (lower is better)
Translates to: LWRTEGTCAQSI*STDLESRREFA
Trigger: TGCAAATTCTCTCCTGCTTTCTAAATCCGTGCTTCAGATGGACTGTGCACACGTCCCTTCAGTCCTCCATAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
3UTR GCA 72 bp TCAGCAAGCAGAGACAAGAGGATCTCTCTGAGCTCATaGCAGCCTCGTCTACAAAGCAAAAAGCAAGGTCTA +
Preference number: 3 (lower is better)
Translates to: SASRDKRISLSS*QPRLQSKKQGL
Trigger: TAGACCTTGCTTTTTGCTTTGTAGACGAGGCTGGCATGAGCTCAGAGAGATCCTCTTGTCTCTGCTTGCTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000172756.2
3UTR-3UTR CAA 90 bp GAGAGACTGAGTATGAGAGCTCAGGGAAGATTCAGTGACACTACGGAAGCAGCATGCAATGGTTTTCCTTaGCATGCAAAGCATGCCTTT +
Preference number: 3 (lower is better)
Translates to: ERLSMRAQGRFSDTTEAACNGFP*HAKHAF
Trigger: AAAGGCATGCTTTGCATGCAAAGGAAAACCATTGCA...TGCTGCTTCCGTAGTGTCACTGAATCTTCCCTGAGCTCTCATACTCAGTCTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
3UTR CCA 72 bp GGAACTGAAACAGGCAGAGGAGGAAATGGGTCACTCTaGACGAGAATAAGGACTCTGAATTTCAACCACTTT +
Preference number: 3 (lower is better)
Translates to: GTETGRGGNGSL*TRIRTLNFNHF
Trigger: AAAGTGGTTGAAATTCAGAGTCCTTATTCTCGTCCAGAGTGACCCATTTCCTCCTCTGCCTGTTTCAGTTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172756.2
3UTR-3UTR CAA 90 bp CTGAAGCACGGATTTAGAAAGCAGGAGAGAATTTGCAACCCTAAAATTCGGAATCATCTTGGCCCTGTTTaGCAGGCTTTAAGGTCCTTT +
Preference number: 3 (lower is better)
Translates to: LKHGFRKQERICNPKIRNHLGPV*QALRSF
Trigger: AAAGGACCTTAAAGCCTGCAAAACAGGGCCAAGATG...ATTCCGAATTTTAGGGTTGCAAATTCTCTCCTGCTTTCTAAATCCGTGCTTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
3UTR CCA 72 bp GGGTCTAATGGGCCTAAGATATTCAGACATGTACTGTaGCTTAAGAGTAATAAAACTCAAACCAGCAGTTTA +
Preference number: 3 (lower is better)
Translates to: GSNGPKIFRHVL*LKSNKTQTSSL
Trigger: TAAACTGCTGGTTTGAGTTTTATTACTCTTAAGCCACAGTACATGTCTGAATATCTTAGGCCCATTAGACCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
3UTR CCA 72 bp TGCAAATGTGGAAGAATCAGACAAACATCCATTGTTTaGGAACCCTTGTCAATAAAACCAGTTGGGTCTAAT +
Preference number: 3 (lower is better)
Translates to: CKCGRIRQTSIV*EPLSIKPVGSN
Trigger: ATTAGACCCAACTGGTTTTATTGACAAGGGTTCCCAAACAATGGATGTTTGTCTGATTCTTCCACATTTGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR TCA 90 bp GCGACATATCCCTGGTGTGAGGGAAGCTACAGTGCGAGCTCGCACAGGGCACTGCTTCCAGTTCCACACTaGGCCGCAGGTGCTTCAACA +
Preference number: 4 (lower is better)
Translates to: ATYPWCEGSYSASSHRALLPVPH*AAGAST
Trigger: TGTTGAAGCACCTGCGGCTCAGTGTGGAACTGGAAG...CAGTGCCCTGTGCGAGCTCGCACTGTAGCTTCCCTCACACCAGGGATATGTCGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR GCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCCCACACTGTACCCGCTaGCACCCAGGGACTCCGCAA +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCPHCTR*HPGTPQ
Trigger: TTGCGGAGTCCCTGGGTGGCAGCGGGTACAGTGTGG...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR CCA 90 bp GCGACATATCCCTGGTGTGAGGGAAGCTACAGTGCGAGCTCGCACAGGGCACTGACCTGCTCGAACCCGTaGAGAATCCTTCCTACGAGC +
Preference number: 4 (lower is better)
Translates to: ATYPWCEGSYSASSHRALTCSNP*RILPTS
Trigger: GCTCGTAGGAAGGATTCTCCACGGGTTCGAGCAGGT...CAGTGCCCTGTGCGAGCTCGCACTGTAGCTTCCCTCACACCAGGGATATGTCGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR TCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCCCTTGGAGCTTACGGTaGCGCTGCCTACAGACCCCT +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCPWSLR*RCLQTP
Trigger: AGGGGTCTGTAGGCAGCGTCACCGTAAGCTCCAAGG...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR CCA 90 bp GCGACATATCCCTGGTGTGAGGGAAGCTACAGTGCGAGCTCGCACAGGGCACTGCCTACAGACCCCTTCTaGGAATCGTTGGCTTCCAGT +
Preference number: 4 (lower is better)
Translates to: ATYPWCEGSYSASSHRALPTDPF*ESLASS
Trigger: ACTGGAAGCCAACGATTCCCAGAAGGGGTCTGTAGG...CAGTGCCCTGTGCGAGCTCGCACTGTAGCTTCCCTCACACCAGGGATATGTCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR TCA 90 bp TCCCAGCACTCAGCAAGCAGAGACAAGAGGATCTCTCTGAGCTCATGCCAGCCTACCCAGAACGGTGTCTaGCAACATCCCTGCTCAGCC +
Preference number: 4 (lower is better)
Translates to: SQHSASRDKRISLSSCQPTQNGV*QHPCSA
Trigger: GGCTGAGCAGGGATGTTGTCAGACACCGTTCTGGGT...AGGCTGGCATGAGCTCAGAGAGATCCTCTTGTCTCTGCTTGCTGAGTGCTGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172756.2
CDS-3UTR TCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCACCCAGAACGGTGTCTaGCAACATCCCTGCTCAGCC +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCTQNGV*QHPCSA
Trigger: GGCTGAGCAGGGATGTTGTCAGACACCGTTCTGGGT...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR TCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCCTTCCAGTTCCACACTaGGCCGCAGGTGCTTCAACA +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCLPVPH*AAGAST
Trigger: TGTTGAAGCACCTGCGGCTCAGTGTGGAACTGGAAG...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR TCA 90 bp AGCAGTGGGCGTGGCAGAACGAATGAGCAGGAAGCTCCACCCCTGAGCAAGCAGCTCAGCAGCATTATCTaGATCCTCCTGGTTCCCAAA +
Preference number: 4 (lower is better)
Translates to: SSGRGRTNEQEAPPLSKQLSSII*ILLVPK
Trigger: TTTGGGAACCAGGAGGATTCAGATAATGCTGCTGAG...CTGCTTGCTCAGGGGTGGAGCTTCCTGCTCATTCGTTCTGCCACGCCCACTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227340.2
CDS-3UTR TCA 90 bp AGCAGTGGGCGTGGCAGAACGAATGAGCAGGAAGCTCCACCCCTGAGCAAGCAGATCCAGAAGTCACCATaGGCAAAGATCTCAGCAGCA +
Preference number: 4 (lower is better)
Translates to: SSGRGRTNEQEAPPLSKQIQKSP*AKISAA
Trigger: TGCTGCTGAGATCTTTGCTCATGGTGACTTCTGGAT...CTGCTTGCTCAGGGGTGGAGCTTCCTGCTCATTCGTTCTGCCACGCCCACTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227340.2
CDS-3UTR TCA 90 bp GCGACATATCCCTGGTGTGAGGGAAGCTACAGTGCGAGCTCGCACAGGGCACTGTCTGACTCACAAAGTTaGGATAAGCTGCAACCAGGG +
Preference number: 4 (lower is better)
Translates to: ATYPWCEGSYSASSHRALSDSQS*DKLQPG
Trigger: CCCTGGTTGCAGCTTATCTCAACTTTGTGAGTCAGA...CAGTGCCCTGTGCGAGCTCGCACTGTAGCTTCCCTCACACCAGGGATATGTCGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR CCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCACCTGCTCGAACCCGTaGAGAATCCTTCCTACGAGC +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCTCSNP*RILPTS
Trigger: GCTCGTAGGAAGGATTCTCCACGGGTTCGAGCAGGT...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR CCA 90 bp AGCAGTGGGCGTGGCAGAACGAATGAGCAGGAAGCTCCACCCCTGAGCAAGCAGCAAGTCAGCCACATCTaGTATTATCCTGATACCGCG +
Preference number: 4 (lower is better)
Translates to: SSGRGRTNEQEAPPLSKQQVSHI*YYPDTA
Trigger: CGCGGTATCAGGATAATACCAGATGTGGCTGACTTG...CTGCTTGCTCAGGGGTGGAGCTTCCTGCTCATTCGTTCTGCCACGCCCACTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227340.2
CDS-3UTR TCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCCTGCAACCAGGGCCATaGTCCCACAACGATGAAACA +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCLQPGP*SHNDET
Trigger: TGTTTCATCGTTGTGGGATCATGGCCCTGGTTGCAG...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR GCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCTCTGAAACAGCTCTCTaGCAGCACTGCAGGGTTCTC +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCSETAL*QHCRVL
Trigger: GAGAACCCTGCAGTGCTGGCAGAGAGCTGTTTCAGA...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR GCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCACACTGAGCCGCAGGTaGTTCAACAGGGTGTTGAAG +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCTLSRR*FNRVLK
Trigger: CTTCAACACCCTGTTGAAGCACCTGCGGCTCAGTGT...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR GCA 90 bp CGTGTGGTGGTGTCCCTAGCATGTGCAGTACATATCGCTCTTGTAGTCTTACAACCACACTGTACCCGCTaGCACCCAGGGACTCCGCAA +
Preference number: 4 (lower is better)
Translates to: RVVVSLACAVHIALVVLQPHCTR*HPGTPQ
Trigger: TTGCGGAGTCCCTGGGTGGCAGCGGGTACAGTGTGG...TTGTAAGACTACAAGAGCGATATGTACTGCACATGCTAGGGACACCACCACACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR CCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCCCTACAGACCCCTTCTaGGAATCGTTGGCTTCCAGT +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCPTDPF*ESLASS
Trigger: ACTGGAAGCCAACGATTCCCAGAAGGGGTCTGTAGG...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR TCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCAAGCTTTGGTTCCCCTaGTTCCAGGAGCTTTGCTAC +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCKLWFP*FQELCY
Trigger: GTAGCAAAGCTCCTGGAATCAGGGGAACCAAAGCTT...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR TCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCCTAACAGAACCTGAATaGTACCTGCTCGAACCCGTG +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCLTEPE*YLLEPV
Trigger: CACGGGTTCGAGCAGGTATCATTCAGGTTCTGTTAG...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR TCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCGCCTCTAACAGAACCTaGATGATACCTGCTCGAACC +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCASNRT*MIPART
Trigger: GGTTCGAGCAGGTATCATTCAGGTTCTGTTAGAGGC...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR TCA 90 bp ACAGCACAGCTTGCACACGCATCCAAATGTGATCCCTGCAAATGTGGAAGAATCCCTTGGAGCTTACGGTaGCGCTGCCTACAGACCCCT +
Preference number: 4 (lower is better)
Translates to: TAQLAHASKCDPCKCGRIPWSLR*RCLQTP
Trigger: AGGGGTCTGTAGGCAGCGTCACCGTAAGCTCCAAGG...GATTCTTCCACATTTGCAGGGATCACATTTGGATGCGTGTGCAAGCTGTGCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR TCA 90 bp GCGACATATCCCTGGTGTGAGGGAAGCTACAGTGCGAGCTCGCACAGGGCACTGATCCTATTGTCTGGATaGCAGCATTCTGCACAATCT +
Preference number: 4 (lower is better)
Translates to: ATYPWCEGSYSASSHRALILLSG*QHSAQS
Trigger: AGATTGTGCAGAATGCTGTCATCCAGACAATAGGAT...CAGTGCCCTGTGCGAGCTCGCACTGTAGCTTCCCTCACACCAGGGATATGTCGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR GCA 90 bp GCGACATATCCCTGGTGTGAGGGAAGCTACAGTGCGAGCTCGCACAGGGCACTGGGATTCACACTGTGCTaGTATTTCTTCAAATGGTGC +
Preference number: 4 (lower is better)
Translates to: ATYPWCEGSYSASSHRALGFTLC*YFFKWC
Trigger: GCACCATTTGAAGAAATAGCAGCACAGTGTGAATCC...CAGTGCCCTGTGCGAGCTCGCACTGTAGCTTCCCTCACACCAGGGATATGTCGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR CCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCTCTGTCCCCAAGCCATaGGCTGGGTATAACATGGTT +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCSVPKP*AGYNMV
Trigger: AACCATGTTATACCCAGCCCATGGCTTGGGGACAGA...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR TCA 90 bp GGTGGTGTCCCTAGCATGTGCAGTACATATCGCTCTTGTAGTCTTACAAGTCTCACCCAGAACGGTGTCTaGCAACATCCCTGCTCAGCC +
Preference number: 4 (lower is better)
Translates to: GGVPSMCSTYRSCSLTSLTQNGV*QHPCSA
Trigger: GGCTGAGCAGGGATGTTGTCAGACACCGTTCTGGGT...GAGACTTGTAAGACTACAAGAGCGATATGTACTGCACATGCTAGGGACACCACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR TCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCTTGCGAACCACACCTTaGATGCCTCTTATTCCAGCA +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCLRTTP*MPLIPA
Trigger: TGCTGGAATAAGAGGCATTCAAGGTGTGGTTCGCAA...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR TCA 90 bp GCGACATATCCCTGGTGTGAGGGAAGCTACAGTGCGAGCTCGCACAGGGCACTGCTGATATCCAAAGTATaGGTGGATGTTCCAAACACA +
Preference number: 4 (lower is better)
Translates to: ATYPWCEGSYSASSHRALLISKV*VDVPNT
Trigger: TGTGTTTGGAACATCCACTCATACTTTGGATATCAG...CAGTGCCCTGTGCGAGCTCGCACTGTAGCTTCCCTCACACCAGGGATATGTCGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR TCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCCTCAGCAGCATTATCTaGATCCTCCTGGTTCCCAAA +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCLSSII*ILLVPK
Trigger: TTTGGGAACCAGGAGGATTCAGATAATGCTGCTGAG...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR TCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCATCCAGAAGTCACCATaGGCAAAGATCTCAGCAGCA +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCIQKSP*AKISAA
Trigger: TGCTGCTGAGATCTTTGCTCATGGTGACTTCTGGAT...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR TCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCTCTGACTCACAAAGTTaGGATAAGCTGCAACCAGGG +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCSDSQS*DKLQPG
Trigger: CCCTGGTTGCAGCTTATCTCAACTTTGTGAGTCAGA...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR GCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCCATATTCCCAAAAGTTaGTCGGCCCAGCAGTTCTCT +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCHIPKS*SAQQFS
Trigger: AGAGAACTGCTGGGCCGAGCAACTTTTGGGAATATG...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR GCA 90 bp AGCAGTGGGCGTGGCAGAACGAATGAGCAGGAAGCTCCACCCCTGAGCAAGCAGCGATCCATTAGGTTGTaGATTACTTCCAAGACTAAC +
Preference number: 4 (lower is better)
Translates to: SSGRGRTNEQEAPPLSKQRSIRL*ITSKTN
Trigger: GTTAGTCTTGGAAGTAATGCACAACCTAATGGATCG...CTGCTTGCTCAGGGGTGGAGCTTCCTGCTCATTCGTTCTGCCACGCCCACTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227340.2
CDS-3UTR GCA 90 bp GCGACATATCCCTGGTGTGAGGGAAGCTACAGTGCGAGCTCGCACAGGGCACTGTGCCTGTATAGCTGTTaGCCATTCTTTTTCATGAAG +
Preference number: 4 (lower is better)
Translates to: ATYPWCEGSYSASSHRALCLYSC*PFFFMK
Trigger: CTTCATGAAAAAGAATGGGCAACAGCTATACAGGCA...CAGTGCCCTGTGCGAGCTCGCACTGTAGCTTCCCTCACACCAGGGATATGTCGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR GCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCCATTGTCCTCCTCTTTaGAGCCCAGATATATGTGCC +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCHCPPL*SPDICA
Trigger: GGCACATATATCTGGGCTGCAAAGAGGAGGACAATG...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR GCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCAAAGTTGAGATAAGCTaGAACCAGGGCCATGATCCC +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCKVEIS*NQGHDP
Trigger: GGGATCATGGCCCTGGTTGCAGCTTATCTCAACTTT...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR CCA 90 bp GCGACATATCCCTGGTGTGAGGGAAGCTACAGTGCGAGCTCGCACAGGGCACTGTCGATCGAGTTTCTCTaGTGCAGATACTGCATAAAA +
Preference number: 4 (lower is better)
Translates to: ATYPWCEGSYSASSHRALSIEFL*CRYCIK
Trigger: TTTTATGCAGTATCTGCACCAGAGAAACTCGATCGA...CAGTGCCCTGTGCGAGCTCGCACTGTAGCTTCCCTCACACCAGGGATATGTCGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR CCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCCTTATCCATATGCTGTaGTTCCCAAATGGTAGCCCG +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCLIHML*FPNGSP
Trigger: CGGGCTACCATTTGGGAACCACAGCATATGGATAAG...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR CCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCCAAGTCAGCCACATCTaGTATTATCCTGATACCGCG +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCQVSHI*YYPDTA
Trigger: CGCGGTATCAGGATAATACCAGATGTGGCTGACTTG...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR CCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCACCTTGCTAACATGCTaGCAAAATGCTGGAACGGCT +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCTLLTC*QNAGTA
Trigger: AGCCGTTCCAGCATTTTGCCAGCATGTTAGCAAGGT...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR TCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCGCCCATTCTTTTTCATaGAGCTCGTATCTTGTCGAC +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCAHSFS*SSYLVD
Trigger: GTCGACAAGATACGAGCTTCATGAAAAAGAATGGGC...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR GCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCGAACCACACCTTGAATaGCTCTTATTCCAGCAATGC +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCEPHLE*LLFQQC
Trigger: GCATTGCTGGAATAAGAGGCATTCAAGGTGTGGTTC...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR GCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCAACATGCTGGCAAAATaGTGGAACGGCTATCATCTG +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCNMLAK*WNGYHL
Trigger: CAGATGATAGCCGTTCCAGCATTTTGCCAGCATGTT...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR GCA 90 bp GCGACATATCCCTGGTGTGAGGGAAGCTACAGTGCGAGCTCGCACAGGGCACTGATCATGAAGCAAATTTaGTTTGGATTCACACTGTGC +
Preference number: 4 (lower is better)
Translates to: ATYPWCEGSYSASSHRALIMKQI*FGFTLC
Trigger: GCACAGTGTGAATCCAAAGCAAATTTGCTTCATGAT...CAGTGCCCTGTGCGAGCTCGCACTGTAGCTTCCCTCACACCAGGGATATGTCGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR CCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCCTCGGTTCGTATTTCTaGATCACTATGACAGGAGTG +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCLGSYF*ITMTGV
Trigger: CACTCCTGTCATAGTGATCCAGAAATACGAACCGAG...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR CCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCATGCTGGCAAAATGCTaGAACGGCTATCATCTGACT +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCMLAKC*NGYHLT
Trigger: AGTCAGATGATAGCCGTTCCAGCATTTTGCCAGCAT...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR CCA 90 bp GAGAGACTGAGTATGAGAGCTCAGGGAAGATTCAGTGACACTACGGAAGCAGCAGGGACGGACTGGTATTaGGTATGCCCAGAAGTAACG +
Preference number: 4 (lower is better)
Translates to: ERLSMRAQGRFSDTTEAAGTDWY*VCPEVT
Trigger: CGTTACTTCTGGGCATACCCAATACCAGTCCGTCCC...TGCTGCTTCCGTAGTGTCACTGAATCTTCCCTGAGCTCTCATACTCAGTCTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
3UTR CAA 72 bp GGCACTGGTCTTCCAGTGGCAGCTGCGTTGTCCTTCTaGAGAACAAGGTCTGGTGTATCTGCACTTAATCAG +
Preference number: 4 (lower is better)
Translates to: GTGLPVAAALSF*RTRSGVSALNQ
Trigger: CTGATTAAGTGCAGATACACCAGACCTTGTTCTCAAGAAGGACAACGCAGCTGCCACTGGAAGACCAGTGCC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR TCA 90 bp GAGAGACTGAGTATGAGAGCTCAGGGAAGATTCAGTGACACTACGGAAGCAGCAAAGCTTTGGTTCCCCTaGTTCCAGGAGCTTTGCTAC +
Preference number: 4 (lower is better)
Translates to: ERLSMRAQGRFSDTTEAAKLWFP*FQELCY
Trigger: GTAGCAAAGCTCCTGGAATCAGGGGAACCAAAGCTT...TGCTGCTTCCGTAGTGTCACTGAATCTTCCCTGAGCTCTCATACTCAGTCTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR TCA 90 bp TGCACACCTTTAATCCCAGCACTCAGCAAGCAGAGACAAGAGGATCTCTCTGAGAAGCTTTGGTTCCCCTaGTTCCAGGAGCTTTGCTAC +
Preference number: 4 (lower is better)
Translates to: CTPLIPALSKQRQEDLSEKLWFP*FQELCY
Trigger: GTAGCAAAGCTCCTGGAATCAGGGGAACCAAAGCTT...CTCAGAGAGATCCTCTTGTCTCTGCTTGCTGAGTGCTGGGATTAAAGGTGTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172756.2
CDS-3UTR TCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCATCCTATTGTCTGGATaGCAGCATTCTGCACAATCT +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCILLSG*QHSAQS
Trigger: AGATTGTGCAGAATGCTGTCATCCAGACAATAGGAT...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR TCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCAATCCCCTAGTTGACTaGTATCCAAAGTATGAGTGG +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCNPLVD*YPKYEW
Trigger: CCACTCATACTTTGGATATCAGTCAACTAGGGGATT...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR GCA 90 bp CGTGTGGTGGTGTCCCTAGCATGTGCAGTACATATCGCTCTTGTAGTCTTACAATCTGAAACAGCTCTCTaGCAGCACTGCAGGGTTCTC +
Preference number: 4 (lower is better)
Translates to: RVVVSLACAVHIALVVLQSETAL*QHCRVL
Trigger: GAGAACCCTGCAGTGCTGGCAGAGAGCTGTTTCAGA...TTGTAAGACTACAAGAGCGATATGTACTGCACATGCTAGGGACACCACCACACG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR GCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCCTTAAAGCAGTGGACTaGAAACTCATTAGGATCCCA +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCLKAVD*KLIRIP
Trigger: TGGGATCCTAATGAGTTTGCAGTCCACTGCTTTAAG...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR GCA 90 bp GGTGGTGTCCCTAGCATGTGCAGTACATATCGCTCTTGTAGTCTTACAAGTCTCACACTGAGCCGCAGGTaGTTCAACAGGGTGTTGAAG +
Preference number: 4 (lower is better)
Translates to: GGVPSMCSTYRSCSLTSLTLSRR*FNRVLK
Trigger: CTTCAACACCCTGTTGAAGCACCTGCGGCTCAGTGT...GAGACTTGTAAGACTACAAGAGCGATATGTACTGCACATGCTAGGGACACCACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR GCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCTGGATGACAGCATTCTaGACAATCTTCTCATCGTTG +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCWMTAF*TIFSSL
Trigger: CAACGATGAGAAGATTGTGCAGAATGCTGTCATCCA...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR GCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCATAACCTTGCTAACATaGTGGCAAAATGCTGGAACG +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCITLLT*WQNAGT
Trigger: CGTTCCAGCATTTTGCCAGCATGTTAGCAAGGTTAT...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR GCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCGGATTCACACTGTGCTaGTATTTCTTCAAATGGTGC +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCGFTLC*YFFKWC
Trigger: GCACCATTTGAAGAAATAGCAGCACAGTGTGAATCC...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR CCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCTTATCTGAATCCTCCTaGTTCCCAAATCCCCTAGTT +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCLSESS*FPNPLV
Trigger: AACTAGGGGATTTGGGAACCAGGAGGATTCAGATAA...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR TCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCAGCTTTGCTACCATGTaGAGGAAGCTTTCTACAAAT +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCSFATM*RKLSTN
Trigger: ATTTGTAGAAAGCTTCCTTCACATGGTAGCAAAGCT...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR TCA 90 bp ACAGCACAGCTTGCACACGCATCCAAATGTGATCCCTGCAAATGTGGAAGAATCCTAACAGAACCTGAATaGTACCTGCTCGAACCCGTG +
Preference number: 4 (lower is better)
Translates to: TAQLAHASKCDPCKCGRILTEPE*YLLEPV
Trigger: CACGGGTTCGAGCAGGTATCATTCAGGTTCTGTTAG...GATTCTTCCACATTTGCAGGGATCACATTTGGATGCGTGTGCAAGCTGTGCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR TCA 90 bp CGTGTGGTGGTGTCCCTAGCATGTGCAGTACATATCGCTCTTGTAGTCTTACAAGCCTCTAACAGAACCTaGATGATACCTGCTCGAACC +
Preference number: 4 (lower is better)
Translates to: RVVVSLACAVHIALVVLQASNRT*MIPART
Trigger: GGTTCGAGCAGGTATCATTCAGGTTCTGTTAGAGGC...TTGTAAGACTACAAGAGCGATATGTACTGCACATGCTAGGGACACCACCACACG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR TCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCCTGATATCCAAAGTATaGGTGGATGTTCCAAACACA +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCLISKV*VDVPNT
Trigger: TGTGTTTGGAACATCCACTCATACTTTGGATATCAG...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR GCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCCTCTTATTCCAGCAATaGGAATCTCGGTTCGTATTT +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCLLFQQ*ESRFVF
Trigger: AAATACGAACCGAGATTCGCATTGCTGGAATAAGAG...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR GCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCCGATCCATTAGGTTGTaGATTACTTCCAAGACTAAC +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCRSIRL*ITSKTN
Trigger: GTTAGTCTTGGAAGTAATGCACAACCTAATGGATCG...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR GCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCTGCCTGTATAGCTGTTaGCCATTCTTTTTCATGAAG +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCCLYSC*PFFFMK
Trigger: CTTCATGAAAAAGAATGGGCAACAGCTATACAGGCA...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR GCA 90 bp GAGAGACTGAGTATGAGAGCTCAGGGAAGATTCAGTGACACTACGGAAGCAGCACATTGTCCTCCTCTTTaGAGCCCAGATATATGTGCC +
Preference number: 4 (lower is better)
Translates to: ERLSMRAQGRFSDTTEAAHCPPL*SPDICA
Trigger: GGCACATATATCTGGGCTGCAAAGAGGAGGACAATG...TGCTGCTTCCGTAGTGTCACTGAATCTTCCCTGAGCTCTCATACTCAGTCTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR GCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCGGTATAACATGGTTCTaGTTCAGTCTTGTAGAGCAT +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCGITWF*FSLVEH
Trigger: ATGCTCTACAAGACTGAAGCAGAACCATGTTATACC...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR CCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCTCGATCGAGTTTCTCTaGTGCAGATACTGCATAAAA +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCSIEFL*CRYCIK
Trigger: TTTTATGCAGTATCTGCACCAGAGAAACTCGATCGA...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR CCA 90 bp CTCAGAACAAAAACCCCTGGCCTCCTGTCCTGCTCTCTACCAAGAGAACAGGAACTCGGTTCGTATTTCTaGATCACTATGACAGGAGTG +
Preference number: 4 (lower is better)
Translates to: LRTKTPGLLSCSLPREQELGSYF*ITMTGV
Trigger: CACTCCTGTCATAGTGATCCAGAAATACGAACCGAG...TTCCTGTTCTCTTGGTAGAGAGCAGGACAGGAGGCCAGGGGTTTTTGTTCTGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000172756.2
CDS-3UTR CCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCTATCCAAAGTATGAGTaGATGTTCCAAACACAGGCA +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCYPKYE*MFQTQA
Trigger: TGCCTGTGTTTGGAACATCCACTCATACTTTGGATA...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR CCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCCAGAAGGCACACTGTTaGATAAAATATCCACCTGAA +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCQKAHC*IKYPPE
Trigger: TTCAGGTGGATATTTTATCCAACAGTGTGCCTTCTG...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR TCA 90 bp GGTGGTGTCCCTAGCATGTGCAGTACATATCGCTCTTGTAGTCTTACAAGTCTCTTGCGAACCACACCTTaGATGCCTCTTATTCCAGCA +
Preference number: 4 (lower is better)
Translates to: GGVPSMCSTYRSCSLTSLLRTTP*MPLIPA
Trigger: TGCTGGAATAAGAGGCATTCAAGGTGTGGTTCGCAA...GAGACTTGTAAGACTACAAGAGCGATATGTACTGCACATGCTAGGGACACCACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR TCA 90 bp CGTGTGGTGGTGTCCCTAGCATGTGCAGTACATATCGCTCTTGTAGTCTTACAACTCAGCAGCATTATCTaGATCCTCCTGGTTCCCAAA +
Preference number: 4 (lower is better)
Translates to: RVVVSLACAVHIALVVLQLSSII*ILLVPK
Trigger: TTTGGGAACCAGGAGGATTCAGATAATGCTGCTGAG...TTGTAAGACTACAAGAGCGATATGTACTGCACATGCTAGGGACACCACCACACG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR TCA 90 bp CGTGTGGTGGTGTCCCTAGCATGTGCAGTACATATCGCTCTTGTAGTCTTACAAATCCAGAAGTCACCATaGGCAAAGATCTCAGCAGCA +
Preference number: 4 (lower is better)
Translates to: RVVVSLACAVHIALVVLQIQKSP*AKISAA
Trigger: TGCTGCTGAGATCTTTGCTCATGGTGACTTCTGGAT...TTGTAAGACTACAAGAGCGATATGTACTGCACATGCTAGGGACACCACCACACG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR GCA 90 bp GGTGGTGTCCCTAGCATGTGCAGTACATATCGCTCTTGTAGTCTTACAAGTCTCCATATTCCCAAAAGTTaGTCGGCCCAGCAGTTCTCT +
Preference number: 4 (lower is better)
Translates to: GGVPSMCSTYRSCSLTSLHIPKS*SAQQFS
Trigger: AGAGAACTGCTGGGCCGAGCAACTTTTGGGAATATG...GAGACTTGTAAGACTACAAGAGCGATATGTACTGCACATGCTAGGGACACCACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR GCA 90 bp CGTGTGGTGGTGTCCCTAGCATGTGCAGTACATATCGCTCTTGTAGTCTTACAAAAAGTTGAGATAAGCTaGAACCAGGGCCATGATCCC +
Preference number: 4 (lower is better)
Translates to: RVVVSLACAVHIALVVLQKVEIS*NQGHDP
Trigger: GGGATCATGGCCCTGGTTGCAGCTTATCTCAACTTT...TTGTAAGACTACAAGAGCGATATGTACTGCACATGCTAGGGACACCACCACACG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR GCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCATCATGAAGCAAATTTaGTTTGGATTCACACTGTGC +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCIMKQI*FGFTLC
Trigger: GCACAGTGTGAATCCAAAGCAAATTTGCTTCATGAT...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR CCA 90 bp CGTGTGGTGGTGTCCCTAGCATGTGCAGTACATATCGCTCTTGTAGTCTTACAACTTATCCATATGCTGTaGTTCCCAAATGGTAGCCCG +
Preference number: 4 (lower is better)
Translates to: RVVVSLACAVHIALVVLQLIHML*FPNGSP
Trigger: CGGGCTACCATTTGGGAACCACAGCATATGGATAAG...TTGTAAGACTACAAGAGCGATATGTACTGCACATGCTAGGGACACCACCACACG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR CCA 90 bp GAGAGACTGAGTATGAGAGCTCAGGGAAGATTCAGTGACACTACGGAAGCAGCAATGCTGGCAAAATGCTaGAACGGCTATCATCTGACT +
Preference number: 4 (lower is better)
Translates to: ERLSMRAQGRFSDTTEAAMLAKC*NGYHLT
Trigger: AGTCAGATGATAGCCGTTCCAGCATTTTGCCAGCAT...TGCTGCTTCCGTAGTGTCACTGAATCTTCCCTGAGCTCTCATACTCAGTCTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR CCA 90 bp CGTGTGGTGGTGTCCCTAGCATGTGCAGTACATATCGCTCTTGTAGTCTTACAAACCTTGCTAACATGCTaGCAAAATGCTGGAACGGCT +
Preference number: 4 (lower is better)
Translates to: RVVVSLACAVHIALVVLQTLLTC*QNAGTA
Trigger: AGCCGTTCCAGCATTTTGCCAGCATGTTAGCAAGGT...TTGTAAGACTACAAGAGCGATATGTACTGCACATGCTAGGGACACCACCACACG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR CCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCTCAAATGGTGCTTTCTaGAACTTCTCTATCACAAGA +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCSNGAF*NFSITR
Trigger: TCTTGTGATAGAGAAGTTCCAGAAAGCACCATTTGA...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR CCA 90 bp ACAGCACAGCTTGCACACGCATCCAAATGTGATCCCTGCAAATGTGGAAGAATCCTTCATCTCATAGACTaGGACGGACTGGTATTGGGT +
Preference number: 4 (lower is better)
Translates to: TAQLAHASKCDPCKCGRILHLID*DGLVLG
Trigger: ACCCAATACCAGTCCGTCCCAGTCTATGAGATGAAG...GATTCTTCCACATTTGCAGGGATCACATTTGGATGCGTGTGCAAGCTGTGCTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR TCA 90 bp CGTGTGGTGGTGTCCCTAGCATGTGCAGTACATATCGCTCTTGTAGTCTTACAATTTCTACAAATGGCTTaGTGCTCTGAGAATGGCAGG +
Preference number: 4 (lower is better)
Translates to: RVVVSLACAVHIALVVLQFLQMA*CSENGR
Trigger: CCTGCCATTCTCAGAGCATCAAGCCATTTGTAGAAA...TTGTAAGACTACAAGAGCGATATGTACTGCACATGCTAGGGACACCACCACACG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR GCA 90 bp ACAGCACAGCTTGCACACGCATCCAAATGTGATCCCTGCAAATGTGGAAGAATCGAACCACACCTTGAATaGCTCTTATTCCAGCAATGC +
Preference number: 4 (lower is better)
Translates to: TAQLAHASKCDPCKCGRIEPHLE*LLFQQC
Trigger: GCATTGCTGGAATAAGAGGCATTCAAGGTGTGGTTC...GATTCTTCCACATTTGCAGGGATCACATTTGGATGCGTGTGCAAGCTGTGCTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR GCA 90 bp GAGAGACTGAGTATGAGAGCTCAGGGAAGATTCAGTGACACTACGGAAGCAGCATGGATGACAGCATTCTaGACAATCTTCTCATCGTTG +
Preference number: 4 (lower is better)
Translates to: ERLSMRAQGRFSDTTEAAWMTAF*TIFSSL
Trigger: CAACGATGAGAAGATTGTGCAGAATGCTGTCATCCA...TGCTGCTTCCGTAGTGTCACTGAATCTTCCCTGAGCTCTCATACTCAGTCTCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR GCA 90 bp GAGAGACTGAGTATGAGAGCTCAGGGAAGATTCAGTGACACTACGGAAGCAGCAATAACCTTGCTAACATaGTGGCAAAATGCTGGAACG +
Preference number: 4 (lower is better)
Translates to: ERLSMRAQGRFSDTTEAAITLLT*WQNAGT
Trigger: CGTTCCAGCATTTTGCCAGCATGTTAGCAAGGTTAT...TGCTGCTTCCGTAGTGTCACTGAATCTTCCCTGAGCTCTCATACTCAGTCTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR GCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCTCCATTGGTATCAATTaGTTTCTTCAGTGCTTCAAA +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCSIGIN*FLQCFK
Trigger: TTTGAAGCACTGAAGAAAGCAATTGATACCAATGGA...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR CCA 90 bp CAAAAACCCCTGGCCTCCTGTCCTGCTCTCTACCAAGAGAACAGGAAAGGGAAAGAAGCTTTCTACAAATaGCTTGATGCTCTGAGAATG +
Preference number: 4 (lower is better)
Translates to: QKPLASCPALYQENRKGKEAFYK*LDALRM
Trigger: CATTCTCAGAGCATCAAGCCATTTGTAGAAAGCTTC...TTTCCCTTTCCTGTTCTCTTGGTAGAGAGCAGGACAGGAGGCCAGGGGTTTTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000172756.2
CDS-3UTR CCA 90 bp GGTGGTGTCCCTAGCATGTGCAGTACATATCGCTCTTGTAGTCTTACAAGTCTCCTCGGTTCGTATTTCTaGATCACTATGACAGGAGTG +
Preference number: 4 (lower is better)
Translates to: GGVPSMCSTYRSCSLTSLLGSYF*ITMTGV
Trigger: CACTCCTGTCATAGTGATCCAGAAATACGAACCGAG...GAGACTTGTAAGACTACAAGAGCGATATGTACTGCACATGCTAGGGACACCACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR CCA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCATAATCTTAAAGCAGTaGACTGCAAACTCATTAGGA +
Preference number: 4 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCIILKQ*TANSLG
Trigger: TCCTAATGAGTTTGCAGTCCACTGCTTTAAGATTAT...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR TCA 90 bp GGTGGTGTCCCTAGCATGTGCAGTACATATCGCTCTTGTAGTCTTACAAGTCTCAATCCCCTAGTTGACTaGTATCCAAAGTATGAGTGG +
Preference number: 4 (lower is better)
Translates to: GGVPSMCSTYRSCSLTSLNPLVD*YPKYEW
Trigger: CCACTCATACTTTGGATATCAGTCAACTAGGGGATT...GAGACTTGTAAGACTACAAGAGCGATATGTACTGCACATGCTAGGGACACCACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR TCA 90 bp CTGAAGCACGGATTTAGAAAGCAGGAGAGAATTTGCAACCCTAAAATTCGGAATCTGCAACCAGGGCCATaGTCCCACAACGATGAAACA +
Preference number: 4 (lower is better)
Translates to: LKHGFRKQERICNPKIRNLQPGP*SHNDET
Trigger: TGTTTCATCGTTGTGGGATCATGGCCCTGGTTGCAG...ATTCCGAATTTTAGGGTTGCAAATTCTCTCCTGCTTTCTAAATCCGTGCTTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR CCA 90 bp TCAGAACAAAAACCCCTGGCCTCCTGTCCTGCTCTCTACCAAGAGAACAGGAAATCGATCGAGTTTCTCTaGTGCAGATACTGCATAAAA +
Preference number: 4 (lower is better)
Translates to: SEQKPLASCPALYQENRKSIEFL*CRYCIK
Trigger: TTTTATGCAGTATCTGCACCAGAGAAACTCGATCGA...TTTCCTGTTCTCTTGGTAGAGAGCAGGACAGGAGGCCAGGGGTTTTTGTTCTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000172756.2
CDS-3UTR CCA 90 bp ACAGCACAGCTTGCACACGCATCCAAATGTGATCCCTGCAAATGTGGAAGAATCTTATCTGAATCCTCCTaGTTCCCAAATCCCCTAGTT +
Preference number: 4 (lower is better)
Translates to: TAQLAHASKCDPCKCGRILSESS*FPNPLV
Trigger: AACTAGGGGATTTGGGAACCAGGAGGATTCAGATAA...GATTCTTCCACATTTGCAGGGATCACATTTGGATGCGTGTGCAAGCTGTGCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR CCA 90 bp GAGAGACTGAGTATGAGAGCTCAGGGAAGATTCAGTGACACTACGGAAGCAGCACAGAAGGCACACTGTTaGATAAAATATCCACCTGAA +
Preference number: 4 (lower is better)
Translates to: ERLSMRAQGRFSDTTEAAQKAHC*IKYPPE
Trigger: TTCAGGTGGATATTTTATCCAACAGTGTGCCTTCTG...TGCTGCTTCCGTAGTGTCACTGAATCTTCCCTGAGCTCTCATACTCAGTCTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR CCA 90 bp CTGAAGCACGGATTTAGAAAGCAGGAGAGAATTTGCAACCCTAAAATTCGGAATGGTCAATGTTCCAGATaGACTGGGAGGAGGGCGTAT +
Preference number: 4 (lower is better)
Translates to: LKHGFRKQERICNPKIRNGQCSR*TGRRAY
Trigger: ATACGCCCTCCTCCCAGTCCATCTGGAACATTGACC...ATTCCGAATTTTAGGGTTGCAAATTCTCTCCTGCTTTCTAAATCCGTGCTTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
3UTR CAA 72 bp ACATGTATAAGCATTAGTGAGACAAATGAGTCCCGTTaGAGGGAGCGGGGAGTTAAACTGCTGGTTAAGGGT +
Preference number: 4 (lower is better)
Translates to: TCISISETNESR*RERGVKLLVKG
Trigger: ACCCTTAACCAGCAGTTTAACTCCCCGCTCCCTCAAACGGGACTCATTTGTCTCACTAATGCTTATACATGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR TCA 90 bp GGTGGTGTCCCTAGCATGTGCAGTACATATCGCTCTTGTAGTCTTACAAGTCTCAGCTTTGCTACCATGTaGAGGAAGCTTTCTACAAAT +
Preference number: 4 (lower is better)
Translates to: GGVPSMCSTYRSCSLTSLSFATM*RKLSTN
Trigger: ATTTGTAGAAAGCTTCCTTCACATGGTAGCAAAGCT...GAGACTTGTAAGACTACAAGAGCGATATGTACTGCACATGCTAGGGACACCACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR TCA 90 bp CTAGTCAAAGTGCTCAGTAATACAGCAGTGCTCAGAACAAAAACCCCTGGCCTCAGCTTTGCTACCATGTaGAGGAAGCTTTCTACAAAT +
Preference number: 4 (lower is better)
Translates to: LVKVLSNTAVLRTKTPGLSFATM*RKLSTN
Trigger: ATTTGTAGAAAGCTTCCTTCACATGGTAGCAAAGCT...GAGGCCAGGGGTTTTTGTTCTGAGCACTGCTGTATTACTGAGCACTTTGACTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000172756.2
CDS-3UTR GCA 90 bp GGTGGTGTCCCTAGCATGTGCAGTACATATCGCTCTTGTAGTCTTACAAGTCTCCTCTTATTCCAGCAATaGGAATCTCGGTTCGTATTT +
Preference number: 4 (lower is better)
Translates to: GGVPSMCSTYRSCSLTSLLLFQQ*ESRFVF
Trigger: AAATACGAACCGAGATTCGCATTGCTGGAATAAGAG...GAGACTTGTAAGACTACAAGAGCGATATGTACTGCACATGCTAGGGACACCACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR GCA 90 bp ACAGCACAGCTTGCACACGCATCCAAATGTGATCCCTGCAAATGTGGAAGAATCCGATCCATTAGGTTGTaGATTACTTCCAAGACTAAC +
Preference number: 4 (lower is better)
Translates to: TAQLAHASKCDPCKCGRIRSIRL*ITSKTN
Trigger: GTTAGTCTTGGAAGTAATGCACAACCTAATGGATCG...GATTCTTCCACATTTGCAGGGATCACATTTGGATGCGTGTGCAAGCTGTGCTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR CCA 90 bp GGTGGTGTCCCTAGCATGTGCAGTACATATCGCTCTTGTAGTCTTACAAGTCTCGAAGCTTTCTACAAATaGCTTGATGCTCTGAGAATG +
Preference number: 4 (lower is better)
Translates to: GGVPSMCSTYRSCSLTSLEAFYK*LDALRM
Trigger: CATTCTCAGAGCATCAAGCCATTTGTAGAAAGCTTC...GAGACTTGTAAGACTACAAGAGCGATATGTACTGCACATGCTAGGGACACCACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR CCA 90 bp CGTGTGGTGGTGTCCCTAGCATGTGCAGTACATATCGCTCTTGTAGTCTTACAATATCCAAAGTATGAGTaGATGTTCCAAACACAGGCA +
Preference number: 4 (lower is better)
Translates to: RVVVSLACAVHIALVVLQYPKYE*MFQTQA
Trigger: TGCCTGTGTTTGGAACATCCACTCATACTTTGGATA...TTGTAAGACTACAAGAGCGATATGTACTGCACATGCTAGGGACACCACCACACG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR GCA 90 bp ACAGCACAGCTTGCACACGCATCCAAATGTGATCCCTGCAAATGTGGAAGAATCACAATCTTATCCATATaGTGTGGTTCCCAAATGGTA +
Preference number: 4 (lower is better)
Translates to: TAQLAHASKCDPCKCGRITILSI*CGSQMV
Trigger: TACCATTTGGGAACCACAGCATATGGATAAGATTGT...GATTCTTCCACATTTGCAGGGATCACATTTGGATGCGTGTGCAAGCTGTGCTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR CCA 90 bp CTGAAGCACGGATTTAGAAAGCAGGAGAGAATTTGCAACCCTAAAATTCGGAATCAAGTCAGCCACATCTaGTATTATCCTGATACCGCG +
Preference number: 4 (lower is better)
Translates to: LKHGFRKQERICNPKIRNQVSHI*YYPDTA
Trigger: CGCGGTATCAGGATAATACCAGATGTGGCTGACTTG...ATTCCGAATTTTAGGGTTGCAAATTCTCTCCTGCTTTCTAAATCCGTGCTTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR CCA 90 bp GGTGGTGTCCCTAGCATGTGCAGTACATATCGCTCTTGTAGTCTTACAAGTCTCTCAAATGGTGCTTTCTaGAACTTCTCTATCACAAGA +
Preference number: 4 (lower is better)
Translates to: GGVPSMCSTYRSCSLTSLSNGAF*NFSITR
Trigger: TCTTGTGATAGAGAAGTTCCAGAAAGCACCATTTGA...GAGACTTGTAAGACTACAAGAGCGATATGTACTGCACATGCTAGGGACACCACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
3UTR CAA 72 bp GGAAGAATCAGACAAACATCCATTGTTTGGGAACCCTaGTCAATAAAACCAGTTGGGTCTAATGGGCCTAAG +
Preference number: 4 (lower is better)
Translates to: GRIRQTSIVWEP*SIKPVGSNGPK
Trigger: CTTAGGCCCATTAGACCCAACTGGTTTTATTGACAAGGGTTCCCAAACAATGGATGTTTGTCTGATTCTTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR TCA 90 bp CTGAAGCACGGATTTAGAAAGCAGGAGAGAATTTGCAACCCTAAAATTCGGAATGCCCATTCTTTTTCATaGAGCTCGTATCTTGTCGAC +
Preference number: 4 (lower is better)
Translates to: LKHGFRKQERICNPKIRNAHSFS*SSYLVD
Trigger: GTCGACAAGATACGAGCTTCATGAAAAAGAATGGGC...ATTCCGAATTTTAGGGTTGCAAATTCTCTCCTGCTTTCTAAATCCGTGCTTCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR GCA 90 bp CTGAAGCACGGATTTAGAAAGCAGGAGAGAATTTGCAACCCTAAAATTCGGAATAACATGCTGGCAAAATaGTGGAACGGCTATCATCTG +
Preference number: 4 (lower is better)
Translates to: LKHGFRKQERICNPKIRNNMLAK*WNGYHL
Trigger: CAGATGATAGCCGTTCCAGCATTTTGCCAGCATGTT...ATTCCGAATTTTAGGGTTGCAAATTCTCTCCTGCTTTCTAAATCCGTGCTTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR GCA 90 bp CGTGTGGTGGTGTCCCTAGCATGTGCAGTACATATCGCTCTTGTAGTCTTACAATCCATTGGTATCAATTaGTTTCTTCAGTGCTTCAAA +
Preference number: 4 (lower is better)
Translates to: RVVVSLACAVHIALVVLQSIGIN*FLQCFK
Trigger: TTTGAAGCACTGAAGAAAGCAATTGATACCAATGGA...TTGTAAGACTACAAGAGCGATATGTACTGCACATGCTAGGGACACCACCACACG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR CCA 90 bp ACAGCACAGCTTGCACACGCATCCAAATGTGATCCCTGCAAATGTGGAAGAATCATAATCTTAAAGCAGTaGACTGCAAACTCATTAGGA +
Preference number: 4 (lower is better)
Translates to: TAQLAHASKCDPCKCGRIIILKQ*TANSLG
Trigger: TCCTAATGAGTTTGCAGTCCACTGCTTTAAGATTAT...GATTCTTCCACATTTGCAGGGATCACATTTGGATGCGTGTGCAAGCTGTGCTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR GCA 90 bp CTGAAGCACGGATTTAGAAAGCAGGAGAGAATTTGCAACCCTAAAATTCGGAATCTTAAAGCAGTGGACTaGAAACTCATTAGGATCCCA +
Preference number: 4 (lower is better)
Translates to: LKHGFRKQERICNPKIRNLKAVD*KLIRIP
Trigger: TGGGATCCTAATGAGTTTGCAGTCCACTGCTTTAAG...ATTCCGAATTTTAGGGTTGCAAATTCTCTCCTGCTTTCTAAATCCGTGCTTCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR TCA 90 bp TTTTGTAGTCACTGTGAAGTACAGCAGCACAATATTCAGTCACTTCTTGTATCATTTCTACAAATGGCTTaGTGCTCTGAGAATGGCAGG +
Preference number: 4 (lower is better)
Translates to: FCSHCEVQQHNIQSLLVSFLQMA*CSENGR
Trigger: CCTGCCATTCTCAGAGCATCAAGCCATTTGTAGAAA...TGATACAAGAAGTGACTGAATATTGTGCTGCTGTACTTCACAGTGACTACAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172756.2
CDS CCA 90 bp TCGTTGTCCTTGGAGCTTACGGTGACGCTGCCTACAGACCCCTTCTaGGAATCGTTGGCTTCCAGTTCCACACTGAGCCGCAGGTGCTTC +
Preference number: 5 (lower is better)
Translates to: SLSLELTVTLPTDPF*ESLASSSTLSRRCF
Trigger: GAAGCACCTGCGGCTCAGTGTGGAACTGGAAGCCAACGATTCCCAGAAGGGGTCTGTAGGCAGCGTCACCGTAAGCTCCAAGGACAACGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
CDS TCA 90 bp AGCACACCCTCAGATAAAGCCACGTGGATGACTCTCCTGGAGAGGTaGACTCGTAAGGCTTCTCCGGCTCAGCGGCAGGCACCTGAACAT +
Preference number: 5 (lower is better)
Translates to: STPSDKATWMTLLER*TRKASPAQRQAPEH
Trigger: ATGTTCAGGTGCCTGCCGCTGAGCCGGAGAAGCCTTACGAGTTCACCTCTCCAGGAGAGTCATCCACGTGGCTTTATCTGAGGGTGTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211878.2
CDS GCA 90 bp AGTTGCTCGGCCCAGCAGTTCTCTGAAACAGCTCTCTGCCAGCACTaGAGGGTTCTCTTCTTTGTCAGCTGCAGAGGGGGAAGAAGGTGG +
Preference number: 5 (lower is better)
Translates to: SCSAQQFSETALCQH*RVLFFVSCRGGRRW
Trigger: CCACCTTCTTCCCCCTCTGCAGCTGACAAAGAAGAGAACCCTGCAGTGCTGGCAGAGAGCTGTTTCAGAGAACTGCTGGGCCGAGCAACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
CDS-3UTR CAA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCGCAGGGTTCTCTTCTTaGTCAGCTGCAGAGGGGGAA +
Preference number: 5 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCAGFSS*SAAEGE
Trigger: TTCCCCCTCTGCAGCTGACAAAGAAGAGAACCCTGC...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR CAA 90 bp GCGACATATCCCTGGTGTGAGGGAAGCTACAGTGCGAGCTCGCACAGGGCACTGTGGCGATCCATTAGGTaGTGCATTACTTCCAAGACT +
Preference number: 5 (lower is better)
Translates to: ATYPWCEGSYSASSHRALWRSIR*CITSKT
Trigger: AGTCTTGGAAGTAATGCACAACCTAATGGATCGCCA...CAGTGCCCTGTGCGAGCTCGCACTGTAGCTTCCCTCACACCAGGGATATGTCGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR CAA 90 bp AGCAGTGGGCGTGGCAGAACGAATGAGCAGGAAGCTCCACCCCTGAGCAAGCAGTGGCGATCCATTAGGTaGTGCATTACTTCCAAGACT +
Preference number: 5 (lower is better)
Translates to: SSGRGRTNEQEAPPLSKQWRSIR*CITSKT
Trigger: AGTCTTGGAAGTAATGCACAACCTAATGGATCGCCA...CTGCTTGCTCAGGGGTGGAGCTTCCTGCTCATTCGTTCTGCCACGCCCACTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227340.2
CDS-3UTR CAA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCCTGATTCCAGGAGCTTaGCTACCATGTGAAGGAAGC +
Preference number: 5 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCLIPGA*LPCEGS
Trigger: GCTTCCTTCACATGGTAGCAAAGCTCCTGGAATCAG...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR CAA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCTCATATTCCCAAAAGTaGCTCGGCCCAGCAGTTCTC +
Preference number: 5 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCSYSQK*LGPAVL
Trigger: GAGAACTGCTGGGCCGAGCAACTTTTGGGAATATGA...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR CAA 90 bp AGCAGTGGGCGTGGCAGAACGAATGAGCAGGAAGCTCCACCCCTGAGCAAGCAGACAATTGTCTTGGCTTaGTATCCAGAAGTCACCATG +
Preference number: 5 (lower is better)
Translates to: SSGRGRTNEQEAPPLSKQTIVLA*YPEVTM
Trigger: CATGGTGACTTCTGGATACAAAGCCAAGACAATTGT...CTGCTTGCTCAGGGGTGGAGCTTCCTGCTCATTCGTTCTGCCACGCCCACTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227340.2
CDS-3UTR CAA 90 bp AGCAGTGGGCGTGGCAGAACGAATGAGCAGGAAGCTCCACCCCTGAGCAAGCAGGCAGTAACAATTGTCTaGGCTTTGTATCCAGAAGTC +
Preference number: 5 (lower is better)
Translates to: SSGRGRTNEQEAPPLSKQAVTIV*ALYPEV
Trigger: GACTTCTGGATACAAAGCCAAGACAATTGTTACTGC...CTGCTTGCTCAGGGGTGGAGCTTCCTGCTCATTCGTTCTGCCACGCCCACTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227340.2
CDS TCA 90 bp CCTATGGAACCTTTAGCAGCAATGGCGACCGCCTCTAACAGAACCTaGATGATACCTGCTCGAACCCGTGGAGAATCCTTCCTACGAGCA +
Preference number: 5 (lower is better)
Translates to: PMEPLAAMATASNRT*MIPARTRGESFLRA
Trigger: TGCTCGTAGGAAGGATTCTCCACGGGTTCGAGCAGGTATCATTCAGGTTCTGTTAGAGGCGGTCGCCATTGCTGCTAAAGGTTCCATAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
CDS TCA 90 bp CAGCATTCTGCACAATCTTCTCATCGTTGTCCTTGGAGCTTACGGTaGCGCTGCCTACAGACCCCTTCTGGGAATCGTTGGCTTCCAGTT +
Preference number: 5 (lower is better)
Translates to: QHSAQSSHRCPWSLR*RCLQTPSGNRWLPV
Trigger: AACTGGAAGCCAACGATTCCCAGAAGGGGTCTGTAGGCAGCGTCACCGTAAGCTCCAAGGACAACGATGAGAAGATTGTGCAGAATGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
CDS-3UTR CAA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCTTTGCGAACCACACCTaGAATGCCTCTTATTCCAGC +
Preference number: 5 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCFANHT*NASYSS
Trigger: GCTGGAATAAGAGGCATTCAAGGTGTGGTTCGCAAA...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR CAA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCTGCTTCAACAGGGTGTaGAAGACTTCCAGCACTGTA +
Preference number: 5 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCCFNRV*KTSSTV
Trigger: TACAGTGCTGGAAGTCTTCAACACCCTGTTGAAGCA...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR CAA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCACAATCTTCTCATCGTaGTCCTTGGAGCTTACGGTG +
Preference number: 5 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCTIFSS*SLELTV
Trigger: CACCGTAAGCTCCAAGGACAACGATGAGAAGATTGT...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR CAA 90 bp ACAGCACAGCTTGCACACGCATCCAAATGTGATCCCTGCAAATGTGGAAGAATCGCAGGGTTCTCTTCTTaGTCAGCTGCAGAGGGGGAA +
Preference number: 5 (lower is better)
Translates to: TAQLAHASKCDPCKCGRIAGFSS*SAAEGE
Trigger: TTCCCCCTCTGCAGCTGACAAAGAAGAGAACCCTGC...GATTCTTCCACATTTGCAGGGATCACATTTGGATGCGTGTGCAAGCTGTGCTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR CAA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCTGGCGATCCATTAGGTaGTGCATTACTTCCAAGACT +
Preference number: 5 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCWRSIR*CITSKT
Trigger: AGTCTTGGAAGTAATGCACAACCTAATGGATCGCCA...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR CAA 90 bp GCGACATATCCCTGGTGTGAGGGAAGCTACAGTGCGAGCTCGCACAGGGCACTGTGTTCTTCCATTCCATaGGTATCAATTGCTTTCTTC +
Preference number: 5 (lower is better)
Translates to: ATYPWCEGSYSASSHRALCSSIP*VSIAFF
Trigger: GAAGAAAGCAATTGATACCAATGGAATGGAAGAACA...CAGTGCCCTGTGCGAGCTCGCACTGTAGCTTCCCTCACACCAGGGATATGTCGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS CCA 90 bp CTCCTTTATTCTCCTCTGTCCCCAAGCCATGGGCTGGGTATAACATaGTTCTGCTTCAGTCTTGTAGAGCATAGACTCTCTTCTCTGGCG +
Preference number: 5 (lower is better)
Translates to: LLYSPLSPSHGLGIT*FCFSLVEHRLSSLA
Trigger: CGCCAGAGAAGAGAGTCTATGCTCTACAAGACTGAAGCAGAACCATGTTATACCCAGCCCATGGCTTGGGGACAGAGGAGAATAAAGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR CAA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCACAATTGTCTTGGCTTaGTATCCAGAAGTCACCATG +
Preference number: 5 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCTIVLA*YPEVTM
Trigger: CATGGTGACTTCTGGATACAAAGCCAAGACAATTGT...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR CAA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCGCAGTAACAATTGTCTaGGCTTTGTATCCAGAAGTC +
Preference number: 5 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCAVTIV*ALYPEV
Trigger: GACTTCTGGATACAAAGCCAAGACAATTGTTACTGC...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR CAA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCATAACCACCTCTTCATaGGCGAGCTCAATAGTTATC +
Preference number: 5 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCITTSS*ASSIVI
Trigger: GATAACTATTGAGCTCGCCAATGAAGAGGTGGTTAT...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR CAA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCGGTGAGCTCCAATATTaGAGCAAGTCTATCATGAAG +
Preference number: 5 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCGELQY*SKSIMK
Trigger: CTTCATGATAGACTTGCTCAAATATTGGAGCTCACC...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR CAA 90 bp ACAGCACAGCTTGCACACGCATCCAAATGTGATCCCTGCAAATGTGGAAGAATCTGGGACGGACTGGTATaGGGTATGCCCAGAAGTAAC +
Preference number: 5 (lower is better)
Translates to: TAQLAHASKCDPCKCGRIWDGLV*GMPRSN
Trigger: GTTACTTCTGGGCATACCCAATACCAGTCCGTCCCA...GATTCTTCCACATTTGCAGGGATCACATTTGGATGCGTGTGCAAGCTGTGCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS TCA 90 bp TGTGCATTACTTCCAAGACTAACTGCCTCAGCTCATAGTCTTCCATaGGGGATGGCGACAATAGAGGATCCAGAAATGACCCAGGCAGTG +
Preference number: 5 (lower is better)
Translates to: CALLPRLTASAHSLP*GMATIEDPEMTQAV
Trigger: CACTGCCTGGGTCATTTCTGGATCCTCTATTGTCGCCATCCCTCATGGAAGACTATGAGCTGAGGCAGTTAGTCTTGGAAGTAATGCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
ENSMUST00000227340.2
CDS GCA 90 bp ATGCGCAAAAACTGGCCTAACAGCATTATTCATATTCCCAAAAGTTaGTCGGCCCAGCAGTTCTCTGAAACAGCTCTCTGCCAGCACTGC +
Preference number: 5 (lower is better)
Translates to: MRKNWPNSIIHIPKS*SAQQFSETALCQHC
Trigger: GCAGTGCTGGCAGAGAGCTGTTTCAGAGAACTGCTGGGCCGAGCAACTTTTGGGAATATGAATAATGCTGTTAGGCCAGTTTTTGCGCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
CDS-3UTR CAA 90 bp ACAGCACAGCTTGCACACGCATCCAAATGTGATCCCTGCAAATGTGGAAGAATCCTGATTCCAGGAGCTTaGCTACCATGTGAAGGAAGC +
Preference number: 5 (lower is better)
Translates to: TAQLAHASKCDPCKCGRILIPGA*LPCEGS
Trigger: GCTTCCTTCACATGGTAGCAAAGCTCCTGGAATCAG...GATTCTTCCACATTTGCAGGGATCACATTTGGATGCGTGTGCAAGCTGTGCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR CAA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCCGAGTTTCAATAACCTaGCTAACATGCTGGCAAAAT +
Preference number: 5 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCRVSIT*LTCWQN
Trigger: ATTTTGCCAGCATGTTAGCAAGGTTATTGAAACTCG...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR CAA 90 bp ACAGCACAGCTTGCACACGCATCCAAATGTGATCCCTGCAAATGTGGAAGAATCTTTGCGAACCACACCTaGAATGCCTCTTATTCCAGC +
Preference number: 5 (lower is better)
Translates to: TAQLAHASKCDPCKCGRIFANHT*NASYSS
Trigger: GCTGGAATAAGAGGCATTCAAGGTGTGGTTCGCAAA...GATTCTTCCACATTTGCAGGGATCACATTTGGATGCGTGTGCAAGCTGTGCTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR CAA 90 bp ACAGCACAGCTTGCACACGCATCCAAATGTGATCCCTGCAAATGTGGAAGAATCTGCTTCAACAGGGTGTaGAAGACTTCCAGCACTGTA +
Preference number: 5 (lower is better)
Translates to: TAQLAHASKCDPCKCGRICFNRV*KTSSTV
Trigger: TACAGTGCTGGAAGTCTTCAACACCCTGTTGAAGCA...GATTCTTCCACATTTGCAGGGATCACATTTGGATGCGTGTGCAAGCTGTGCTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR CAA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCTTCCATTGGTATCAATaGCTTTCTTCAGTGCTTCAA +
Preference number: 5 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCFHWYQ*LSSVLQ
Trigger: TTGAAGCACTGAAGAAAGCAATTGATACCAATGGAA...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR CAA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCTGTTCTTCCATTCCATaGGTATCAATTGCTTTCTTC +
Preference number: 5 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCCSSIP*VSIAFF
Trigger: GAAGAAAGCAATTGATACCAATGGAATGGAAGAACA...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS-3UTR CAA 90 bp TCCTGGATACATGACTGCCATGGCTGCTGCTGCTGCTGCTACTTCTGTTGCTGCTATCATGAAGCAAATTaGCTTTGGATTCACACTGTG +
Preference number: 5 (lower is better)
Translates to: SWIHDCHGCCCCCYFCCCYHEAN*LWIHTV
Trigger: CACAGTGTGAATCCAAAGCAAATTTGCTTCATGATA...GCAGCAACAGAAGTAGCAGCAGCAGCAGCAGCCATGGCAGTCATGTATCCAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS CCA 90 bp ACATCTGGTATTATCCTGATACCGCGGAGCTTTGCTCTGTTGTCATaGCGATCCATTAGGTTGTGCATTACTTCCAAGACTAACTGCCTC +
Preference number: 5 (lower is better)
Translates to: TSGIILIPRSFALLS*RSIRLCITSKTNCL
Trigger: GAGGCAGTTAGTCTTGGAAGTAATGCACAACCTAATGGATCGCCATGACAACAGAGCAAAGCTCCGCGGTATCAGGATAATACCAGATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
ENSMUST00000227340.2
CDS CCA 90 bp GCTCAGCCTTTCCGCCAGGTAGGCACCAATTCGATCGAGTTTCTCTaGTGCAGATACTGCATAAAATGTCAGTTTTTCCATATCAGCTTT +
Preference number: 5 (lower is better)
Translates to: AQPFRQVGTNSIEFL*CRYCIKCQFFHISF
Trigger: AAAGCTGATATGGAAAAACTGACATTTTATGCAGTATCTGCACCAGAGAAACTCGATCGAATTGGTGCCTACCTGGCGGAAAGGCTGAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000015146.16
ENSMUST00000172756.2
ENSMUST00000173858.8
ENSMUST00000211878.2
CDS-3UTR CAA 90 bp GGTGGTGTCCCTAGCATGTGCAGTACATATCGCTCTTGTAGTCTTACAAGTCTCGCAGTAACAATTGTCTaGGCTTTGTATCCAGAAGTC +
Preference number: 5 (lower is better)
Translates to: GGVPSMCSTYRSCSLTSLAVTIV*ALYPEV
Trigger: GACTTCTGGATACAAAGCCAAGACAATTGTTACTGC...GAGACTTGTAAGACTACAAGAGCGATATGTACTGCACATGCTAGGGACACCACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR CAA 90 bp ACAGCACAGCTTGCACACGCATCCAAATGTGATCCCTGCAAATGTGGAAGAATCATAACCACCTCTTCATaGGCGAGCTCAATAGTTATC +
Preference number: 5 (lower is better)
Translates to: TAQLAHASKCDPCKCGRIITTSS*ASSIVI
Trigger: GATAACTATTGAGCTCGCCAATGAAGAGGTGGTTAT...GATTCTTCCACATTTGCAGGGATCACATTTGGATGCGTGTGCAAGCTGTGCTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR CAA 90 bp GAGAGACTGAGTATGAGAGCTCAGGGAAGATTCAGTGACACTACGGAAGCAGCACGAGTTTCAATAACCTaGCTAACATGCTGGCAAAAT +
Preference number: 5 (lower is better)
Translates to: ERLSMRAQGRFSDTTEAARVSIT*LTCWQN
Trigger: ATTTTGCCAGCATGTTAGCAAGGTTATTGAAACTCG...TGCTGCTTCCGTAGTGTCACTGAATCTTCCCTGAGCTCTCATACTCAGTCTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS GCA 90 bp CGCCAGGTAGGCACCAATTCGATCGAGTTTCTCTGGTGCAGATACTaGATAAAATGTCAGTTTTTCCATATCAGCTTTAACAAGGCCATC +
Preference number: 5 (lower is better)
Translates to: RQVGTNSIEFLWCRY*IKCQFFHISFNKAI
Trigger: GATGGCCTTGTTAAAGCTGATATGGAAAAACTGACATTTTATGCAGTATCTGCACCAGAGAAACTCGATCGAATTGGTGCCTACCTGGCG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000015146.16
ENSMUST00000172756.2
ENSMUST00000173858.8
ENSMUST00000211878.2
CDS GCA 90 bp CAGCCTTTCCGCCAGGTAGGCACCAATTCGATCGAGTTTCTCTGGTaGAGATACTGCATAAAATGTCAGTTTTTCCATATCAGCTTTAAC +
Preference number: 5 (lower is better)
Translates to: QPFRQVGTNSIEFLW*RYCIKCQFFHISFN
Trigger: GTTAAAGCTGATATGGAAAAACTGACATTTTATGCAGTATCTGCACCAGAGAAACTCGATCGAATTGGTGCCTACCTGGCGGAAAGGCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000015146.16
ENSMUST00000172756.2
ENSMUST00000173858.8
ENSMUST00000211878.2
CDS-3UTR CAA 90 bp ATCTCTCATGCCTTTTGTAGTCACTGTGAAGTACAGCAGCACAATATTCAGTCACTGATTCCAGGAGCTTaGCTACCATGTGAAGGAAGC +
Preference number: 5 (lower is better)
Translates to: ISHAFCSHCEVQQHNIQSLIPGA*LPCEGS
Trigger: GCTTCCTTCACATGGTAGCAAAGCTCCTGGAATCAG...TGACTGAATATTGTGCTGCTGTACTTCACAGTGACTACAAAAGGCATGAGAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172756.2
CDS-3UTR CAA 90 bp CTGAAGCACGGATTTAGAAAGCAGGAGAGAATTTGCAACCCTAAAATTCGGAATTCATATTCCCAAAAGTaGCTCGGCCCAGCAGTTCTC +
Preference number: 5 (lower is better)
Translates to: LKHGFRKQERICNPKIRNSYSQK*LGPAVL
Trigger: GAGAACTGCTGGGCCGAGCAACTTTTGGGAATATGA...ATTCCGAATTTTAGGGTTGCAAATTCTCTCCTGCTTTCTAAATCCGTGCTTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS TCA 90 bp ATGGTAGCCCGAAGTTCATCATTAACTGTTTTGCGAACCACACCTTaGATGCCTCTTATTCCAGCAATGCGAATCTCGGTTCGTATTTCT +
Preference number: 5 (lower is better)
Translates to: MVARSSSLTVLRTTP*MPLIPAMRISVRIS
Trigger: AGAAATACGAACCGAGATTCGCATTGCTGGAATAAGAGGCATTCAAGGTGTGGTTCGCAAAACAGTTAATGATGAACTTCGGGCTACCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
CDS TCA 90 bp TTTTCTCTCTTTTTATCTTCAAGTCAGCCACATCTGGTATTATCCTaGTACCGCGGAGCTTTGCTCTGTTGTCATGGCGATCCATTAGGT +
Preference number: 5 (lower is better)
Translates to: FSLFLSSSQPHLVLS*YRGALLCCHGDPLG
Trigger: ACCTAATGGATCGCCATGACAACAGAGCAAAGCTCCGCGGTATCAGGATAATACCAGATGTGGCTGACTTGAAGATAAAAAGAGAGAAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
ENSMUST00000227340.2
CDS-3UTR CAA 90 bp CTGAAGCACGGATTTAGAAAGCAGGAGAGAATTTGCAACCCTAAAATTCGGAATACAATCTTCTCATCGTaGTCCTTGGAGCTTACGGTG +
Preference number: 5 (lower is better)
Translates to: LKHGFRKQERICNPKIRNTIFSS*SLELTV
Trigger: CACCGTAAGCTCCAAGGACAACGATGAGAAGATTGT...ATTCCGAATTTTAGGGTTGCAAATTCTCTCCTGCTTTCTAAATCCGTGCTTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR CAA 90 bp GGTGGTGTCCCTAGCATGTGCAGTACATATCGCTCTTGTAGTCTTACAAGTCTCTTCCATTGGTATCAATaGCTTTCTTCAGTGCTTCAA +
Preference number: 5 (lower is better)
Translates to: GGVPSMCSTYRSCSLTSLFHWYQ*LSSVLQ
Trigger: TTGAAGCACTGAAGAAAGCAATTGATACCAATGGAA...GAGACTTGTAAGACTACAAGAGCGATATGTACTGCACATGCTAGGGACACCACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS CCA 90 bp CATAGTTCGAGTTTCAATAACCTTGCTAACATGCTGGCAAAATGCTaGAACGGCTATCATCTGACTCACAAAGTTGAGATAAGCTGCAAC +
Preference number: 5 (lower is better)
Translates to: HSSSFNNLANMLAKC*NGYHLTHKVEISCN
Trigger: GTTGCAGCTTATCTCAACTTTGTGAGTCAGATGATAGCCGTTCCAGCATTTTGCCAGCATGTTAGCAAGGTTATTGAAACTCGAACTATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
CDS CCA 90 bp AAGGTAAGTCATGAGGTAAAACAGTACATACTCGGTTCGTATTTCTaGATCACTATGACAGGAGTGACACATGGCACTGAATCGAGATAC +
Preference number: 5 (lower is better)
Translates to: KVSHEVKQYILGSYF*ITMTGVTHGTESRY
Trigger: GTATCTCGATTCAGTGCCATGTGTCACTCCTGTCATAGTGATCCAGAAATACGAACCGAGTATGTACTGTTTTACCTCATGACTTACCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172756.2
CDS-3UTR CAA 90 bp CTGAAGCACGGATTTAGAAAGCAGGAGAGAATTTGCAACCCTAAAATTCGGAATACAATTGTCTTGGCTTaGTATCCAGAAGTCACCATG +
Preference number: 5 (lower is better)
Translates to: LKHGFRKQERICNPKIRNTIVLA*YPEVTM
Trigger: CATGGTGACTTCTGGATACAAAGCCAAGACAATTGT...ATTCCGAATTTTAGGGTTGCAAATTCTCTCCTGCTTTCTAAATCCGTGCTTCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS-3UTR CAA 90 bp CTGAAGCACGGATTTAGAAAGCAGGAGAGAATTTGCAACCCTAAAATTCGGAATGGTGAGCTCCAATATTaGAGCAAGTCTATCATGAAG +
Preference number: 5 (lower is better)
Translates to: LKHGFRKQERICNPKIRNGELQY*SKSIMK
Trigger: CTTCATGATAGACTTGCTCAAATATTGGAGCTCACC...ATTCCGAATTTTAGGGTTGCAAATTCTCTCCTGCTTTCTAAATCCGTGCTTCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS GCA 90 bp ATGTATAAAGAAGCTCATAGTTTTTCTGAACATTGTCCTCCTCTTTaGAGCCCAGATATATGTGCCTGTATAGCTGTTGCCCATTCTTTT +
Preference number: 5 (lower is better)
Translates to: MYKEAHSFSEHCPPL*SPDICACIAVAHSF
Trigger: AAAAGAATGGGCAACAGCTATACAGGCACATATATCTGGGCTGCAAAGAGGAGGACAATGTTCAGAAAAACTATGAGCTTCTTTATACAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
CDS-3UTR CAA 90 bp CTGAAGCACGGATTTAGAAAGCAGGAGAGAATTTGCAACCCTAAAATTCGGAATTATCATGAAGCAAATTaGCTTTGGATTCACACTGTG +
Preference number: 5 (lower is better)
Translates to: LKHGFRKQERICNPKIRNYHEAN*LWIHTV
Trigger: CACAGTGTGAATCCAAAGCAAATTTGCTTCATGATA...ATTCCGAATTTTAGGGTTGCAAATTCTCTCCTGCTTTCTAAATCCGTGCTTCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015146.16
CDS CAA 72 bp ACGGTGACGCTGCCTACAGACCCCTTCTGGGAATCGTaGGCTTCCAGTTCCACACTGAGCCGCAGGTGCTTC +
Preference number: 6 (lower is better)
Translates to: TVTLPTDPFWES*ASSSTLSRRCF
Trigger: GAAGCACCTGCGGCTCAGTGTGGAACTGGAAGCCAACGATTCCCAGAAGGGGTCTGTAGGCAGCGTCACCGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
CDS CAA 90 bp TTGGAGCTTACGGTGACGCTGCCTACAGACCCCTTCTGGGAATCGTaGGCTTCCAGTTCCACACTGAGCCGCAGGTGCTTCAACAGGGTG +
Preference number: 6 (lower is better)
Translates to: LELTVTLPTDPFWES*ASSSTLSRRCFNRV
Trigger: CACCCTGTTGAAGCACCTGCGGCTCAGTGTGGAACTGGAAGCCAACGATTCCCAGAAGGGGTCTGTAGGCAGCGTCACCGTAAGCTCCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
CDS CCA 72 bp TTGGAGCTTACGGTGACGCTGCCTACAGACCCCTTCTaGGAATCGTTGGCTTCCAGTTCCACACTGAGCCGC +
Preference number: 6 (lower is better)
Translates to: LELTVTLPTDPF*ESLASSSTLSR
Trigger: GCGGCTCAGTGTGGAACTGGAAGCCAACGATTCCCAGAAGGGGTCTGTAGGCAGCGTCACCGTAAGCTCCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
CDS TCA 72 bp TCAGATAAAGCCACGTGGATGACTCTCCTGGAGAGGTaGACTCGTAAGGCTTCTCCGGCTCAGCGGCAGGCA +
Preference number: 6 (lower is better)
Translates to: SDKATWMTLLER*TRKASPAQRQA
Trigger: TGCCTGCCGCTGAGCCGGAGAAGCCTTACGAGTTCACCTCTCCAGGAGAGTCATCCACGTGGCTTTATCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211878.2
CDS TCA 72 bp GCAGCAGCAGCACACCCTCAGATAAAGCCACGTGGATaGCTCTCCTGGAGAGGTGAACTCGTAAGGCTTCTC +
Preference number: 6 (lower is better)
Translates to: AAAAHPQIKPRG*LSWRGELVRLL
Trigger: GAGAAGCCTTACGAGTTCACCTCTCCAGGAGAGTCATCCACGTGGCTTTATCTGAGGGTGTGCTGCTGCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211878.2
CDS TCA 72 bp GCACAATCTTCTCATCGTTGTCCTTGGAGCTTACGGTaGCGCTGCCTACAGACCCCTTCTGGGAATCGTTGG +
Preference number: 6 (lower is better)
Translates to: AQSSHRCPWSLR*RCLQTPSGNRW
Trigger: CCAACGATTCCCAGAAGGGGTCTGTAGGCAGCGTCACCGTAAGCTCCAAGGACAACGATGAGAAGATTGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
CDS GCA 72 bp CATAAGGAACTGTCAGCCTCTCCACACTGTACCCGCTaGCACCCAGGGACTCCGCAATCTTGTTGGTCAAAA +
Preference number: 6 (lower is better)
Translates to: HKELSASPHCTR*HPGTPQSCWSK
Trigger: TTTTGACCAACAAGATTGCGGAGTCCCTGGGTGGCAGCGGGTACAGTGTGGAGAGGCTGACAGTTCCTTATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
CDS TCA 72 bp CCTTTAGCAGCAATGGCGACCGCCTCTAACAGAACCTaGATGATACCTGCTCGAACCCGTGGAGAATCCTTC +
Preference number: 6 (lower is better)
Translates to: PLAAMATASNRT*MIPARTRGESF
Trigger: GAAGGATTCTCCACGGGTTCGAGCAGGTATCATTCAGGTTCTGTTAGAGGCGGTCGCCATTGCTGCTAAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
CDS CAA 90 bp ATTGTCTGGATGACAGCATTCTGCACAATCTTCTCATCGTTGTCCTaGGAGCTTACGGTGACGCTGCCTACAGACCCCTTCTGGGAATCG +
Preference number: 6 (lower is better)
Translates to: IVWMTAFCTIFSSLS*ELTVTLPTDPFWES
Trigger: CGATTCCCAGAAGGGGTCTGTAGGCAGCGTCACCGTAAGCTCCAAGGACAACGATGAGAAGATTGTGCAGAATGCTGTCATCCAGACAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
CDS CCA 72 bp TTGGGTATGCCCAGAAGTAACGGTCAATGTTCCAGATaGACTGGGAGGAGGGCGTATGGTGAGCTCCAATAT +
Preference number: 6 (lower is better)
Translates to: LGMPRSNGQCSR*TGRRAYGELQY
Trigger: ATATTGGAGCTCACCATACGCCCTCCTCCCAGTCCATCTGGAACATTGACCGTTACTTCTGGGCATACCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015146.16
ENSMUST00000211878.2
CDS CAA 72 bp GTCTGGATGACAGCATTCTGCACAATCTTCTCATCGTaGTCCTTGGAGCTTACGGTGACGCTGCCTACAGAC +
Preference number: 6 (lower is better)
Translates to: VWMTAFCTIFSS*SLELTVTLPTD
Trigger: GTCTGTAGGCAGCGTCACCGTAAGCTCCAAGGACAACGATGAGAAGATTGTGCAGAATGCTGTCATCCAGAC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
CDS CAA 90 bp AATCCTATTGTCTGGATGACAGCATTCTGCACAATCTTCTCATCGTaGTCCTTGGAGCTTACGGTGACGCTGCCTACAGACCCCTTCTGG +
Preference number: 6 (lower is better)
Translates to: NPIVWMTAFCTIFSS*SLELTVTLPTDPFW
Trigger: CCAGAAGGGGTCTGTAGGCAGCGTCACCGTAAGCTCCAAGGACAACGATGAGAAGATTGTGCAGAATGCTGTCATCCAGACAATAGGATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
CDS CAA 72 bp CGGAGCTTTGCTCTGTTGTCATGGCGATCCATTAGGTaGTGCATTACTTCCAAGACTAACTGCCTCAGCTCA +
Preference number: 6 (lower is better)
Translates to: RSFALLSWRSIR*CITSKTNCLSS
Trigger: TGAGCTGAGGCAGTTAGTCTTGGAAGTAATGCACAACCTAATGGATCGCCATGACAACAGAGCAAAGCTCCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
ENSMUST00000227340.2
CDS CAA 90 bp TCAGCCACATCTGGTATTATCCTGATACCGCGGAGCTTTGCTCTGTaGTCATGGCGATCCATTAGGTTGTGCATTACTTCCAAGACTAAC +
Preference number: 6 (lower is better)
Translates to: SATSGIILIPRSFAL*SWRSIRLCITSKTN
Trigger: GTTAGTCTTGGAAGTAATGCACAACCTAATGGATCGCCATGACAACAGAGCAAAGCTCCGCGGTATCAGGATAATACCAGATGTGGCTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
ENSMUST00000227340.2
CDS GCA 72 bp AACTGGCCTAACAGCATTATTCATATTCCCAAAAGTTaGTCGGCCCAGCAGTTCTCTGAAACAGCTCTCTGC +
Preference number: 6 (lower is better)
Translates to: NWPNSIIHIPKS*SAQQFSETALC
Trigger: GCAGAGAGCTGTTTCAGAGAACTGCTGGGCCGAGCAACTTTTGGGAATATGAATAATGCTGTTAGGCCAGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
CDS CAA 72 bp GAACCTGAAGCTTTGGTTCCCCTGATTCCAGGAGCTTaGCTACCATGTGAAGGAAGCTTTCTACAAATGGCT +
Preference number: 6 (lower is better)
Translates to: EPEALVPLIPGA*LPCEGSFLQMA
Trigger: AGCCATTTGTAGAAAGCTTCCTTCACATGGTAGCAAAGCTCCTGGAATCAGGGGAACCAAAGCTTCAGGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000015146.16
ENSMUST00000172756.2
ENSMUST00000173858.8
ENSMUST00000174856.7
ENSMUST00000211878.2
CDS CAA 72 bp TCTGGTATTATCCTGATACCGCGGAGCTTTGCTCTGTaGTCATGGCGATCCATTAGGTTGTGCATTACTTCC +
Preference number: 6 (lower is better)
Translates to: SGIILIPRSFAL*SWRSIRLCITS
Trigger: GGAAGTAATGCACAACCTAATGGATCGCCATGACAACAGAGCAAAGCTCCGCGGTATCAGGATAATACCAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
ENSMUST00000227340.2
CDS CAA 72 bp ATGGCCAGTCGAATGAGGTCAATAACCACCTCTTCATaGGCGAGCTCAATAGTTATCAGCGCCAGAGATGTA +
Preference number: 6 (lower is better)
Translates to: MASRMRSITTSS*ASSIVISARDV
Trigger: TACATCTCTGGCGCTGATAACTATTGAGCTCGCCAATGAAGAGGTGGTTATTGACCTCATTCGACTGGCCAT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
CDS CAA 90 bp AATAGAGGATCCAGAAATGACCCAGGCAGTGCAGTAACAATTGTCTaGGCTTTGTATCCAGAAGTCACCATGAGCAAAGATCTCAGCAGC +
Preference number: 6 (lower is better)
Translates to: NRGSRNDPGSAVTIV*ALYPEVTMSKDLSS
Trigger: GCTGCTGAGATCTTTGCTCATGGTGACTTCTGGATACAAAGCCAAGACAATTGTTACTGCACTGCCTGGGTCATTTCTGGATCCTCTATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
ENSMUST00000227340.2
CDS CAA 90 bp TGTTCCAGATGGACTGGGAGGAGGGCGTATGGTGAGCTCCAATATTaGAGCAAGTCTATCATGAAGCAAATTTGCTTTGGATTCACACTG +
Preference number: 6 (lower is better)
Translates to: CSRWTGRRAYGELQY*SKSIMKQICFGFTL
Trigger: CAGTGTGAATCCAAAGCAAATTTGCTTCATGATAGACTTGCTCAAATATTGGAGCTCACCATACGCCCTCCTCCCAGTCCATCTGGAACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015146.16
ENSMUST00000211878.2
CDS GCA 72 bp AACGGCTATCATCTGACTCACAAAGTTGAGATAAGCTaGAACCAGGGCCATGATCCCACAACGATGAAACAT +
Preference number: 6 (lower is better)
Translates to: NGYHLTHKVEIS*NQGHDPTTMKH
Trigger: ATGTTTCATCGTTGTGGGATCATGGCCCTGGTTGCAGCTTATCTCAACTTTGTGAGTCAGATGATAGCCGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
CDS CCA 72 bp ATTATCCTGATACCGCGGAGCTTTGCTCTGTTGTCATaGCGATCCATTAGGTTGTGCATTACTTCCAAGACT +
Preference number: 6 (lower is better)
Translates to: IILIPRSFALLS*RSIRLCITSKT
Trigger: AGTCTTGGAAGTAATGCACAACCTAATGGATCGCCATGACAACAGAGCAAAGCTCCGCGGTATCAGGATAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
ENSMUST00000227340.2
CDS CAA 72 bp AATGACCCAGGCAGTGCAGTAACAATTGTCTTGGCTTaGTATCCAGAAGTCACCATGAGCAAAGATCTCAGC +
Preference number: 6 (lower is better)
Translates to: NDPGSAVTIVLA*YPEVTMSKDLS
Trigger: GCTGAGATCTTTGCTCATGGTGACTTCTGGATACAAAGCCAAGACAATTGTTACTGCACTGCCTGGGTCATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
ENSMUST00000227340.2
CDS TCA 72 bp TGCAACCAGGGCCATGATCCCACAACGATGAAACATTaGCAGGTTATCTTCATTGATAATTGCACTGTCCTG +
Preference number: 6 (lower is better)
Translates to: CNQGHDPTTMKH*QVIFIDNCTVL
Trigger: CAGGACAGTGCAATTATCAATGAAGATAACCTGTCAATGTTTCATCGTTGTGGGATCATGGCCCTGGTTGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
CDS GCA 72 bp GAAGCTCATAGTTTTTCTGAACATTGTCCTCCTCTTTaGAGCCCAGATATATGTGCCTGTATAGCTGTTGCC +
Preference number: 6 (lower is better)
Translates to: EAHSFSEHCPPL*SPDICACIAVA
Trigger: GGCAACAGCTATACAGGCACATATATCTGGGCTGCAAAGAGGAGGACAATGTTCAGAAAAACTATGAGCTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
CDS CCA 72 bp TTCCGCCAGGTAGGCACCAATTCGATCGAGTTTCTCTaGTGCAGATACTGCATAAAATGTCAGTTTTTCCAT +
Preference number: 6 (lower is better)
Translates to: FRQVGTNSIEFL*CRYCIKCQFFH
Trigger: ATGGAAAAACTGACATTTTATGCAGTATCTGCACCAGAGAAACTCGATCGAATTGGTGCCTACCTGGCGGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000015146.16
ENSMUST00000172756.2
ENSMUST00000173858.8
ENSMUST00000211878.2
CDS CCA 72 bp TCTTATTCCAGCAATGCGAATCTCGGTTCGTATTTCTaGATCACTATGACAGGAGTGACACATGGCACTGAA +
Preference number: 6 (lower is better)
Translates to: SYSSNANLGSYF*ITMTGVTHGTE
Trigger: TTCAGTGCCATGTGTCACTCCTGTCATAGTGATCCAGAAATACGAACCGAGATTCGCATTGCTGGAATAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
CDS CAA 72 bp CCGAAGTTCATCATTAACTGTTTTGCGAACCACACCTaGAATGCCTCTTATTCCAGCAATGCGAATCTCGGT +
Preference number: 6 (lower is better)
Translates to: PKFIINCFANHT*NASYSSNANLG
Trigger: ACCGAGATTCGCATTGCTGGAATAAGAGGCATTCAAGGTGTGGTTCGCAAAACAGTTAATGATGAACTTCGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
CDS CAA 72 bp TCCAGAAATGACCCAGGCAGTGCAGTAACAATTGTCTaGGCTTTGTATCCAGAAGTCACCATGAGCAAAGAT +
Preference number: 6 (lower is better)
Translates to: SRNDPGSAVTIV*ALYPEVTMSKD
Trigger: ATCTTTGCTCATGGTGACTTCTGGATACAAAGCCAAGACAATTGTTACTGCACTGCCTGGGTCATTTCTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
ENSMUST00000227340.2
CDS CAA 90 bp AATGGTAGCCCGAAGTTCATCATTAACTGTTTTGCGAACCACACCTaGAATGCCTCTTATTCCAGCAATGCGAATCTCGGTTCGTATTTC +
Preference number: 6 (lower is better)
Translates to: NGSPKFIINCFANHT*NASYSSNANLGSYF
Trigger: GAAATACGAACCGAGATTCGCATTGCTGGAATAAGAGGCATTCAAGGTGTGGTTCGCAAAACAGTTAATGATGAACTTCGGGCTACCATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
CDS TCA 72 bp CGAAGTTCATCATTAACTGTTTTGCGAACCACACCTTaGATGCCTCTTATTCCAGCAATGCGAATCTCGGTT +
Preference number: 6 (lower is better)
Translates to: RSSSLTVLRTTP*MPLIPAMRISV
Trigger: AACCGAGATTCGCATTGCTGGAATAAGAGGCATTCAAGGTGTGGTTCGCAAAACAGTTAATGATGAACTTCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
CDS GCA 72 bp TCTTTGCAGCCCAGATATATGTGCCTGTATAGCTGTTaGCCATTCTTTTTCATGAAGCTCGTATCTTGTCGA +
Preference number: 6 (lower is better)
Translates to: SLQPRYMCLYSC*PFFFMKLVSCR
Trigger: TCGACAAGATACGAGCTTCATGAAAAAGAATGGGCAACAGCTATACAGGCACATATATCTGGGCTGCAAAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
CDS GCA 72 bp TCGAGTTTCAATAACCTTGCTAACATGCTGGCAAAATaGTGGAACGGCTATCATCTGACTCACAAAGTTGAG +
Preference number: 6 (lower is better)
Translates to: SSFNNLANMLAK*WNGYHLTHKVE
Trigger: CTCAACTTTGTGAGTCAGATGATAGCCGTTCCAGCATTTTGCCAGCATGTTAGCAAGGTTATTGAAACTCGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
CDS CCA 72 bp CATGAGGTAAAACAGTACATACTCGGTTCGTATTTCTaGATCACTATGACAGGAGTGACACATGGCACTGAA +
Preference number: 6 (lower is better)
Translates to: HEVKQYILGSYF*ITMTGVTHGTE
Trigger: TTCAGTGCCATGTGTCACTCCTGTCATAGTGATCCAGAAATACGAACCGAGTATGTACTGTTTTACCTCATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172756.2
CDS CAA 90 bp GTAGAGCATAGACTCTCTTCTCTGGCGTATGGTGAGCTCCAATATTaGAGCAAGTCTATCATGAAGCAAATTTGCTTTGGATTCACACTG +
Preference number: 6 (lower is better)
Translates to: VEHRLSSLAYGELQY*SKSIMKQICFGFTL
Trigger: CAGTGTGAATCCAAAGCAAATTTGCTTCATGATAGACTTGCTCAAATATTGGAGCTCACCATACGCCAGAGAAGAGAGTCTATGCTCTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173858.8
CDS CCA 72 bp AGTTTCAATAACCTTGCTAACATGCTGGCAAAATGCTaGAACGGCTATCATCTGACTCACAAAGTTGAGATA +
Preference number: 6 (lower is better)
Translates to: SFNNLANMLAKC*NGYHLTHKVEI
Trigger: TATCTCAACTTTGTGAGTCAGATGATAGCCGTTCCAGCATTTTGCCAGCATGTTAGCAAGGTTATTGAAACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
CDS CCA 72 bp TCACACTGTGCTGCTATTTCTTCAAATGGTGCTTTCTaGAACTTCTCTATCACAAGACGTCTCTTTTCCTTT +
Preference number: 6 (lower is better)
Translates to: SHCAAISSNGAF*NFSITRRLFSF
Trigger: AAAGGAAAAGAGACGTCTTGTGATAGAGAAGTTCCAGAAAGCACCATTTGAAGAAATAGCAGCACAGTGTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
CDS GCA 72 bp CTGGATAGAATACATTATAATCTTAAAGCAGTGGACTaGAAACTCATTAGGATCCCACAGCTTGTGATGATC +
Preference number: 6 (lower is better)
Translates to: LDRIHYNLKAVD*KLIRIPQLVMI
Trigger: GATCATCACAAGCTGTGGGATCCTAATGAGTTTGCAGTCCACTGCTTTAAGATTATAATGTATTCTATCCAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2
CDS TCA 72 bp ATATGTGCCTGTATAGCTGTTGCCCATTCTTTTTCATaGAGCTCGTATCTTGTCGACAAATTTTCTCTCTTT +
Preference number: 6 (lower is better)
Translates to: ICACIAVAHSFS*SSYLVDKFSLF
Trigger: AAAGAGAGAAAATTTGTCGACAAGATACGAGCTTCATGAAAAAGAATGGGCAACAGCTATACAGGCACATAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000015146.16
ENSMUST00000173858.8
ENSMUST00000211878.2