Pregenerated sensors for EFNB3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000003934Ensembl transcript IDs: ENSMUST00000004036.6
Found 85 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGTCCATGGACCACCTCTTCACTGACAAGGGCGCTGTGTTGGGCTTaGAGGGAGGAAGGCATCAGCCAGACAGCCGTCTGGTTAGGTGGG | + |
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Preference number: 1 (lower is better) Translates to: SPWTTSSLTRALCWA*REEGISQTAVWLGG Trigger: CCCACCTAACCAGACGGCTGTCTGGCTGATGCCTTCCTCCCTTCAAGCCCAACACAGCGCCCTTGTCAGTGAAGAGGTGGTCCATGGACT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR CCA 90 bp | GGGCCAAAGTCATGGCGCAGGTGTCCCTCATACCATGAATTACACTaGAGGAGCACCCCATGGACGGCTAGATTGAGGAGAGCCAGGTGG | + |
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Preference number: 1 (lower is better) Translates to: GPKSWRRCPSYHELH*RSTPWTARLRRARW Trigger: CCACCTGGCTCTCCTCAATCTAGCCGTCCATGGGGTGCTCCTCCAGTGTAATTCATGGTATGAGGGACACCTGCGCCATGACTTTGGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR CCA 90 bp | CCAGGAGGAGCCAAAGAGCTGGTAGGGCAAAGGGGGCCAAAGTCATaGCGCAGGTGTCCCTCATACCATGAATTACACTGGAGGAGCACC | + |
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Preference number: 1 (lower is better) Translates to: PGGAKELVGQRGPKS*RRCPSYHELHWRST Trigger: GGTGCTCCTCCAGTGTAATTCATGGTATGAGGGACACCTGCGCCATGACTTTGGCCCCCTTTGCCCTACCAGCTCTTTGGCTCCTCCTGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR GCA 90 bp | GGGCCTGCCACAGCAAGTGGCAGTCATCTTAGCTGTCCTAAAAACTaGACAGAGCACAAGGGAAGGGGTCCTTGGGAAGTGCCACTGAAC | + |
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Preference number: 1 (lower is better) Translates to: GPATASGSHLSCPKN*TEHKGRGPWEVPLN Trigger: GTTCAGTGGCACTTCCCAAGGACCCCTTCCCTTGTGCTCTGTGCAGTTTTTAGGACAGCTAAGATGACTGCCACTTGCTGTGGCAGGCCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR CCA 90 bp | GCGCCAGAGAGATGGCTTGACCTCTGGTGGACAAAGCAACCATTTTaGCTGGTGATTGAGGTGGCCAACATGATGGCCAAGGGCAGCTTT | + |
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Preference number: 1 (lower is better) Translates to: APERWLDLWWTKQPF*LVIEVANMMAKGSF Trigger: AAAGCTGCCCTTGGCCATCATGTTGGCCACCTCAATCACCAGCCAAAATGGTTGCTTTGTCCACCAGAGGTCAAGCCATCTCTCTGGCGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR CCA 90 bp | AAGGAGCTGGGAACTACAGCGCCAGAGAGATGGCTTGACCTCTGGTaGACAAAGCAACCATTTTGGCTGGTGATTGAGGTGGCCAACATG | + |
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Preference number: 1 (lower is better) Translates to: KELGTTAPERWLDLW*TKQPFWLVIEVANM Trigger: CATGTTGGCCACCTCAATCACCAGCCAAAATGGTTGCTTTGTCCACCAGAGGTCAAGCCATCTCTCTGGCGCTGTAGTTCCCAGCTCCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR GCA 90 bp | CTAAGCCACTTGGAATTCCAGCCAGACCACTTCCTATTTCAGAAGTaGGACTTCCTGTTCTGGATGAAGGCACTTCCAGTTCCTGCTGCG | + |
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Preference number: 1 (lower is better) Translates to: LSHLEFQPDHFLFQK*DFLFWMKALPVPAA Trigger: CGCAGCAGGAACTGGAAGTGCCTTCATCCAGAACAGGAAGTCGCACTTCTGAAATAGGAAGTGGTCTGGCTGGAATTCCAAGTGGCTTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR GCA 90 bp | GATCTAATAAAACTGAGGCGGGAGAACACCGAGGCAGCAGCCCACTaGACACTAAAGAGCGGGAAGAGGTATAGGCTTGTCACTATGGAA | + |
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Preference number: 1 (lower is better) Translates to: DLIKLRRENTEAAAH*TLKSGKRYRLVTME Trigger: TTCCATAGTGACAAGCCTATACCTCTTCCCGCTCTTTAGTGTGCAGTGGGCTGCTGCCTCGGTGTTCTCCCGCCTCAGTTTTATTAGATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR CCA 90 bp | ACAGTCCATCATGTCCACACTGCTTCATGTCTTCCTATCAGCCACTaGCCACAACAGGACACTTCTTCTCATGGTAGTAGTTGTGGCCCA | + |
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Preference number: 1 (lower is better) Translates to: TVHHVHTASCLPISH*PQQDTSSHGSSCGP Trigger: TGGGCCACAACTACTACCATGAGAAGAAGTGTCCTGTTGTGGCCAGTGGCTGATAGGAAGACATGAAGCAGTGTGGACATGATGGACTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR CCA 90 bp | CAGCCAGACAGCCGTCTGGTTAGGTGGGGAGAACATGTGGGTTCTTaGGGTAGTTCTGTTGATCAACAGAGATTATACTGGGGTACAGTA | + |
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Preference number: 1 (lower is better) Translates to: QPDSRLVRWGEHVGS*GSSVDQQRLYWGTV Trigger: TACTGTACCCCAGTATAATCTCTGTTGATCAACAGAACTACCCCAAGAACCCACATGTTCTCCCCACCTAACCAGACGGCTGTCTGGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR GCA 90 bp | AGGTATAGGCTTGTCACTATGGAAACAGCAACCAGTGCTAATAACTaGCATCAGCTAGACCAGTCCATGGACCACCTCTTCACTGACAAG | + |
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Preference number: 1 (lower is better) Translates to: RYRLVTMETATSANN*HQLDQSMDHLFTDK Trigger: CTTGTCAGTGAAGAGGTGGTCCATGGACTGGTCTAGCTGATGGCAGTTATTAGCACTGGTTGCTGTTTCCATAGTGACAAGCCTATACCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR CCA 90 bp | CATGTGGGTTCTTGGGGTAGTTCTGTTGATCAACAGAGATTATACTaGGGTACAGTAAGGGGAGAACAAGACAAATTGGGCCTGCCACAG | + |
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Preference number: 1 (lower is better) Translates to: HVGSWGSSVDQQRLY*GTVRGEQDKLGLPQ Trigger: CTGTGGCAGGCCCAATTTGTCTTGTTCTCCCCTTACTGTACCCCAGTATAATCTCTGTTGATCAACAGAACTACCCCAAGAACCCACATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR CAA 90 bp | CAGTCCATGGACCACCTCTTCACTGACAAGGGCGCTGTGTTGGGCTaGAAGGGAGGAAGGCATCAGCCAGACAGCCGTCTGGTTAGGTGG | + |
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Preference number: 2 (lower is better) Translates to: QSMDHLFTDKGAVLG*KGGRHQPDSRLVRW Trigger: CCACCTAACCAGACGGCTGTCTGGCTGATGCCTTCCTCCCTTCAAGCCCAACACAGCGCCCTTGTCAGTGAAGAGGTGGTCCATGGACTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR-3UTR TCA 90 bp | GAGGCAGCAGCCCACTGCACACTAAAGAGCGGGAAGAGGTATAGGCTTGTCACTCCCACTCTGGGTGGGTaGGGGAGAAAGGACACCTGG | + |
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Preference number: 2 (lower is better) Translates to: EAAAHCTLKSGKRYRLVTPTLGG*GRKDTW Trigger: CCAGGTGTCCTTTCTCCCTCACCCACCCAGAGTGGG...AGTGACAAGCCTATACCTCTTCCCGCTCTTTAGTGTGCAGTGGGCTGCTGCCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR CAA 90 bp | CTAGACCAGTCCATGGACCACCTCTTCACTGACAAGGGCGCTGTGTaGGGCTTGAAGGGAGGAAGGCATCAGCCAGACAGCCGTCTGGTT | + |
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Preference number: 2 (lower is better) Translates to: LDQSMDHLFTDKGAV*GLKGGRHQPDSRLV Trigger: AACCAGACGGCTGTCTGGCTGATGCCTTCCTCCCTTCAAGCCCAACACAGCGCCCTTGTCAGTGAAGAGGTGGTCCATGGACTGGTCTAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR-3UTR CCA 90 bp | GATGCCCCAACCCAGGAGACACGTGAGAGGCACAGGAAGGACAAGAAGCCGAGATGGAGGAGCACCCCATaGACGGCTAGATTGAGGAGA | + |
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Preference number: 2 (lower is better) Translates to: DAPTQETRERHRKDKKPRWRSTP*TARLRR Trigger: TCTCCTCAATCTAGCCGTCCATGGGGTGCTCCTCCA...TCTCGGCTTCTTGTCCTTCCTGTGCCTCTCACGTGTCTCCTGGGTTGGGGCATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR-3UTR CCA 90 bp | TGCCCATTCGGCATCAGACACAGTCCATCATGTCCACACTGCTTCATGTCTTCCTCCCCACCCCCACTCTaGGTGGGTGAGGGAGAAAGG | + |
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Preference number: 2 (lower is better) Translates to: CPFGIRHSPSCPHCFMSSSPPPL*VGEGER Trigger: CCTTTCTCCCTCACCCACCCAGAGTGGGGGTGGGGA...GGAAGACATGAAGCAGTGTGGACATGATGGACTGTGTCTGATGCCGAATGGGCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR-3UTR CCA 90 bp | TGCCCATTCGGCATCAGACACAGTCCATCATGTCCACACTGCTTCATGTCTTCCCACCCCCACTCTGGGTaGGTGAGGGAGAAAGGACAC | + |
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Preference number: 2 (lower is better) Translates to: CPFGIRHSPSCPHCFMSSHPHSG*VREKGH Trigger: GTGTCCTTTCTCCCTCACCCACCCAGAGTGGGGGTG...GGAAGACATGAAGCAGTGTGGACATGATGGACTGTGTCTGATGCCGAATGGGCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR-3UTR CCA 90 bp | GACCACCTCTTCACTGACAAGGGCGCTGTGTTGGGCTTGAAGGGAGGAAGGCATAAGGGAAGGGGTCCTTaGGAAGTGCCACTGAACACT | + |
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Preference number: 2 (lower is better) Translates to: DHLFTDKGAVLGLKGGRHKGRGP*EVPLNT Trigger: AGTGTTCAGTGGCACTTCCCAAGGACCCCTTCCCTT...ATGCCTTCCTCCCTTCAAGCCCAACACAGCGCCCTTGTCAGTGAAGAGGTGGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR-3UTR TCA 90 bp | GCTTCATGTCTTCCTATCAGCCACTGGCCACAACAGGACACTTCTTCTCATGGTCATGGACGGCTAGATTaGGGAGAGCCAGGTGGGAGG | + |
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Preference number: 2 (lower is better) Translates to: ASCLPISHWPQQDTSSHGHGRLD*GEPGGR Trigger: CCTCCCACCTGGCTCTCCTCAATCTAGCCGTCCATG...ACCATGAGAAGAAGTGTCCTGTTGTGGCCAGTGGCTGATAGGAAGACATGAAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR-3UTR TCA 90 bp | CCCAGGCCATTTCTGTCCAGGCCTGGTCACTTCTTGTCTGGAACGAGTCACTTCGTGTCCCTCATACCATaGATTACACTGGAGGAGCAC | + |
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Preference number: 2 (lower is better) Translates to: PRPFLSRPGHFLSGTSHFVSLIP*ITLEEH Trigger: GTGCTCCTCCAGTGTAATTCATGGTATGAGGGACAC...GAAGTGACTCGTTCCAGACAAGAAGTGACCAGGCCTGGACAGAAATGGCCTGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR-3UTR TCA 90 bp | GCTTCATGTCTTCCTATCAGCCACTGGCCACAACAGGACACTTCTTCTCATGGTAGAGGAGAGATGCTTTaGTGCCCCAACCCAGGAGAC | + |
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Preference number: 2 (lower is better) Translates to: ASCLPISHWPQQDTSSHGRGEML*CPNPGD Trigger: GTCTCCTGGGTTGGGGCATCAAAGCATCTCTCCTCT...ACCATGAGAAGAAGTGTCCTGTTGTGGCCAGTGGCTGATAGGAAGACATGAAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR-3UTR TCA 90 bp | AAGAGCGGGAAGAGGTATAGGCTTGTCACTATGGAAACAGCAACCAGTGCTAATGCGCTGTGTTGGGCTTaGAGGGAGGAAGGCATCAGC | + |
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Preference number: 2 (lower is better) Translates to: KSGKRYRLVTMETATSANALCWA*REEGIS Trigger: GCTGATGCCTTCCTCCCTTCAAGCCCAACACAGCGC...ATTAGCACTGGTTGCTGTTTCCATAGTGACAAGCCTATACCTCTTCCCGCTCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR-3UTR GCA 90 bp | CAACCCAGGAGACACGTGAGAGGCACAGGAAGGACAAGAAGCCGAGAGGGTAAAAGAGGCAGAAAGAGGTaGCAACCAAAAGACAGACTG | + |
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Preference number: 2 (lower is better) Translates to: QPRRHVRGTGRTRSREGKRGRKR*QPKDRL Trigger: CAGTCTGTCTTTTGGTTGGCACCTCTTTCTGCCTCT...TTTACCCTCTCGGCTTCTTGTCCTTCCTGTGCCTCTCACGTGTCTCCTGGGTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR-3UTR GCA 90 bp | GACCACCTCTTCACTGACAAGGGCGCTGTGTTGGGCTTGAAGGGAGGAAGGCATCCATCATGTCCACACTaGTTCATGTCTTCCTATCAG | + |
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Preference number: 2 (lower is better) Translates to: DHLFTDKGAVLGLKGGRHPSCPH*FMSSYQ Trigger: CTGATAGGAAGACATGAAGCAGTGTGGACATGATGG...ATGCCTTCCTCCCTTCAAGCCCAACACAGCGCCCTTGTCAGTGAAGAGGTGGTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR-3UTR CCA 90 bp | TATCGAGGTGACGGCCATACCCCGCCACCTCCCCAATGGCAATATCAACTTCCTTGGCTTGACCTCTGGTaGACAAAGCAACCATTTTGG | + |
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Preference number: 2 (lower is better) Translates to: YRGDGHTPPPPQWQYQLPWLDLW*TKQPFW Trigger: CCAAAATGGTTGCTTTGTCCACCAGAGGTCAAGCCA...AGGAAGTTGATATTGCCATTGGGGAGGTGGCGGGGTATGGCCGTCACCTCGATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR-3UTR GCA 90 bp | TGCCCATTCGGCATCAGACACAGTCCATCATGTCCACACTGCTTCATGTCTTCCAGCAAAGAGGAGAGATaGTTTGATGCCCCAACCCAG | + |
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Preference number: 2 (lower is better) Translates to: CPFGIRHSPSCPHCFMSSSKEER*FDAPTQ Trigger: CTGGGTTGGGGCATCAAAGCATCTCTCCTCTTTGCT...GGAAGACATGAAGCAGTGTGGACATGATGGACTGTGTCTGATGCCGAATGGGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR-3UTR GCA 90 bp | GCTTCATGTCTTCCTATCAGCCACTGGCCACAACAGGACACTTCTTCTCATGGTGCAGAAACAGAGGAGTaGCCACAGTCAAATGAGGGT | + |
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Preference number: 2 (lower is better) Translates to: ASCLPISHWPQQDTSSHGAETEE*PQSNEG Trigger: ACCCTCATTTGACTGTGGGCACTCCTCTGTTTCTGC...ACCATGAGAAGAAGTGTCCTGTTGTGGCCAGTGGCTGATAGGAAGACATGAAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR-3UTR GCA 90 bp | GCCAAGGGCAGCTTTGATCTAATAAAACTGAGGCGGGAGAACACCGAGGCAGCATTCCTATTTCAGAAGTaGGACTTCCTGTTCTGGATG | + |
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Preference number: 2 (lower is better) Translates to: AKGSFDLIKLRRENTEAAFLFQK*DFLFWM Trigger: CATCCAGAACAGGAAGTCGCACTTCTGAAATAGGAA...TGCTGCCTCGGTGTTCTCCCGCCTCAGTTTTATTAGATCAAAGCTGCCCTTGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR-3UTR CCA 90 bp | AAGAGCGGGAAGAGGTATAGGCTTGTCACTATGGAAACAGCAACCAGTGCTAATTACCATGAATTACACTaGAGGAGCACCCCATGGACG | + |
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Preference number: 2 (lower is better) Translates to: KSGKRYRLVTMETATSANYHELH*RSTPWT Trigger: CGTCCATGGGGTGCTCCTCCAGTGTAATTCATGGTA...ATTAGCACTGGTTGCTGTTTCCATAGTGACAAGCCTATACCTCTTCCCGCTCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR CAA 90 bp | CAACAGAGATTATACTGGGGTACAGTAAGGGGAGAACAAGACAAATaGGGCCTGCCACAGCAAGTGGCAGTCATCTTAGCTGTCCTAAAA | + |
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Preference number: 2 (lower is better) Translates to: QQRLYWGTVRGEQDK*GLPQQVAVILAVLK Trigger: TTTTAGGACAGCTAAGATGACTGCCACTTGCTGTGGCAGGCCCAATTTGTCTTGTTCTCCCCTTACTGTACCCCAGTATAATCTCTGTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR GCA 72 bp | AAACTGAGGCGGGAGAACACCGAGGCAGCAGCCCACTaGACACTAAAGAGCGGGAAGAGGTATAGGCTTGTC | + |
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Preference number: 3 (lower is better) Translates to: KLRRENTEAAAH*TLKSGKRYRLV Trigger: GACAAGCCTATACCTCTTCCCGCTCTTTAGTGTGCAGTGGGCTGCTGCCTCGGTGTTCTCCCGCCTCAGTTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR CCA 72 bp | CCCTCATACCATGAATTACACTGGAGGAGCACCCCATaGACGGCTAGATTGAGGAGAGCCAGGTGGGAGGAG | + |
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Preference number: 3 (lower is better) Translates to: PSYHELHWRSTP*TARLRRARWEE Trigger: CTCCTCCCACCTGGCTCTCCTCAATCTAGCCGTCCATGGGGTGCTCCTCCAGTGTAATTCATGGTATGAGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR-3UTR CAA 90 bp | GAGGTGGCCAACATGATGGCCAAGGGCAGCTTTGATCTAATAAAACTGAGGCGGCCATGGACGGCTAGATaGAGGAGAGCCAGGTGGGAG | + |
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Preference number: 3 (lower is better) Translates to: EVANMMAKGSFDLIKLRRPWTAR*RRARWE Trigger: CTCCCACCTGGCTCTCCTCAATCTAGCCGTCCATGG...CCGCCTCAGTTTTATTAGATCAAAGCTGCCCTTGGCCATCATGTTGGCCACCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR CCA 72 bp | GCCAAAGAGCTGGTAGGGCAAAGGGGGCCAAAGTCATaGCGCAGGTGTCCCTCATACCATGAATTACACTGG | + |
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Preference number: 3 (lower is better) Translates to: AKELVGQRGPKS*RRCPSYHELHW Trigger: CCAGTGTAATTCATGGTATGAGGGACACCTGCGCCATGACTTTGGCCCCCTTTGCCCTACCAGCTCTTTGGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR-3UTR CAA 90 bp | GAGGCAGCAGCCCACTGCACACTAAAGAGCGGGAAGAGGTATAGGCTTGTCACTGGAGAACAAGACAAATaGGGCCTGCCACAGCAAGTG | + |
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Preference number: 3 (lower is better) Translates to: EAAAHCTLKSGKRYRLVTGEQDK*GLPQQV Trigger: CACTTGCTGTGGCAGGCCCAATTTGTCTTGTTCTCC...AGTGACAAGCCTATACCTCTTCCCGCTCTTTAGTGTGCAGTGGGCTGCTGCCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR-3UTR CAA 90 bp | TTTTGGCTGGTGATTGAGGTGGCCAACATGATGGCCAAGGGCAGCTTTGATCTACAAGGGAAGGGGTCCTaGGGAAGTGCCACTGAACAC | + |
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Preference number: 3 (lower is better) Translates to: FWLVIEVANMMAKGSFDLQGKGS*GSATEH Trigger: GTGTTCAGTGGCACTTCCCAAGGACCCCTTCCCTTG...TAGATCAAAGCTGCCCTTGGCCATCATGTTGGCCACCTCAATCACCAGCCAAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR GCA 72 bp | AAGTTCCAGCTTCCTCCTAAAGCAGGGAGTTCCTCCTaGCCCTTTCTCCACAGGGTAAGAACCATCCACTTC | + |
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Preference number: 3 (lower is better) Translates to: KFQLPPKAGSSS*PFLHRVRTIHF Trigger: GAAGTGGATGGTTCTTACCCTGTGGAGAAAGGGGCAGGAGGAACTCCCTGCTTTAGGAGGAAGCTGGAACTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR CCA 72 bp | GGAACTACAGCGCCAGAGAGATGGCTTGACCTCTGGTaGACAAAGCAACCATTTTGGCTGGTGATTGAGGTG | + |
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Preference number: 3 (lower is better) Translates to: GTTAPERWLDLW*TKQPFWLVIEV Trigger: CACCTCAATCACCAGCCAAAATGGTTGCTTTGTCCACCAGAGGTCAAGCCATCTCTCTGGCGCTGTAGTTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR CCA 72 bp | CTGGGAACTACAGCGCCAGAGAGATGGCTTGACCTCTaGTGGACAAAGCAACCATTTTGGCTGGTGATTGAG | + |
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Preference number: 3 (lower is better) Translates to: LGTTAPERWLDL*WTKQPFWLVIE Trigger: CTCAATCACCAGCCAAAATGGTTGCTTTGTCCACCAGAGGTCAAGCCATCTCTCTGGCGCTGTAGTTCCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR-3UTR CAA 90 bp | TATCGAGGTGACGGCCATACCCCGCCACCTCCCCAATGGCAATATCAACTTCCTGGAAGAGGTATAGGCTaGTCACTATGGAAACAGCAA | + |
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Preference number: 3 (lower is better) Translates to: YRGDGHTPPPPQWQYQLPGRGIG*SLWKQQ Trigger: TTGCTGTTTCCATAGTGACAAGCCTATACCTCTTCC...AGGAAGTTGATATTGCCATTGGGGAGGTGGCGGGGTATGGCCGTCACCTCGATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR GCA 72 bp | CCATTCGGCATCAGACACAGTCCATCATGTCCACACTaGTTCATGTCTTCCTATCAGCCACTGGCCACAACA | + |
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Preference number: 3 (lower is better) Translates to: PFGIRHSPSCPH*FMSSYQPLATT Trigger: TGTTGTGGCCAGTGGCTGATAGGAAGACATGAAGCAGTGTGGACATGATGGACTGTGTCTGATGCCGAATGG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR CCA 72 bp | AGATGGCTTGACCTCTGGTGGACAAAGCAACCATTTTaGCTGGTGATTGAGGTGGCCAACATGATGGCCAAG | + |
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Preference number: 3 (lower is better) Translates to: RWLDLWWTKQPF*LVIEVANMMAK Trigger: CTTGGCCATCATGTTGGCCACCTCAATCACCAGCCAAAATGGTTGCTTTGTCCACCAGAGGTCAAGCCATCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR-3UTR CAA 90 bp | CAACAGAGATTATACTGGGGTACAGTAAGGGGAGAACAAGACAAATTGGGCCTGCCCAGACTAAGCCACTaGGAATTCCAGCCAGACCAC | + |
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Preference number: 3 (lower is better) Translates to: QQRLYWGTVRGEQDKLGLPRLSH*EFQPDH Trigger: GTGGTCTGGCTGGAATTCCAAGTGGCTTAGTCTGGG...CAGGCCCAATTTGTCTTGTTCTCCCCTTACTGTACCCCAGTATAATCTCTGTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR TCA 72 bp | TGGTCACTTCTTGTCTGGAACGAGTCACTTCCTATCTaGTGCCCATTCGGCATCAGACACAGTCCATCATGT | + |
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Preference number: 3 (lower is better) Translates to: WSLLVWNESLPI*CPFGIRHSPSC Trigger: ACATGATGGACTGTGTCTGATGCCGAATGGGCATCAGATAGGAAGTGACTCGTTCCAGACAAGAAGTGACCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR GCA 72 bp | CTTGTCACTATGGAAACAGCAACCAGTGCTAATAACTaGCATCAGCTAGACCAGTCCATGGACCACCTCTTC | + |
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Preference number: 3 (lower is better) Translates to: LVTMETATSANN*HQLDQSMDHLF Trigger: GAAGAGGTGGTCCATGGACTGGTCTAGCTGATGGCAGTTATTAGCACTGGTTGCTGTTTCCATAGTGACAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR CCA 72 bp | CATGTCCACACTGCTTCATGTCTTCCTATCAGCCACTaGCCACAACAGGACACTTCTTCTCATGGTAGTAGT | + |
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Preference number: 3 (lower is better) Translates to: HVHTASCLPISH*PQQDTSSHGSS Trigger: ACTACTACCATGAGAAGAAGTGTCCTGTTGTGGCCAGTGGCTGATAGGAAGACATGAAGCAGTGTGGACATG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR-3UTR CAA 90 bp | CAACAGGACACTTCTTCTCATGGTAGTAGTTGTGGCCCAATAACCACCCCAAATAGTTGGTATGAAAGGTaGGAAAGGGCCAAGAGCAAA | + |
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Preference number: 3 (lower is better) Translates to: QQDTSSHGSSCGPITTPNSWYER*ERAKSK Trigger: TTTGCTCTTGGCCCTTTCCAACCTTTCATACCAACT...ATTTGGGGTGGTTATTGGGCCACAACTACTACCATGAGAAGAAGTGTCCTGTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR CCA 72 bp | TCTTGGGGTAGTTCTGTTGATCAACAGAGATTATACTaGGGTACAGTAAGGGGAGAACAAGACAAATTGGGC | + |
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Preference number: 3 (lower is better) Translates to: SWGSSVDQQRLY*GTVRGEQDKLG Trigger: GCCCAATTTGTCTTGTTCTCCCCTTACTGTACCCCAGTATAATCTCTGTTGATCAACAGAACTACCCCAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| CDS-3UTR TCA 90 bp | GATGCCCCAACCCAGGAGACACGTGAGAGGCACAGGAAGGACAAGAAGCCGAGAAGACAGGCTCCAGGCTaGGTCCAGATACCAGCCCCG | + |
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Preference number: 4 (lower is better) Translates to: DAPTQETRERHRKDKKPRRQAPG*VQIPAP Trigger: CGGGGCTGGTATCTGGACTCAGCCTGGAGCCTGTCT...TCTCGGCTTCTTGTCCTTCCTGTGCCTCTCACGTGTCTCCTGGGTTGGGGCATC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| CDS-3UTR CCA 90 bp | GATGCCCCAACCCAGGAGACACGTGAGAGGCACAGGAAGGACAAGAAGCCGAGATCACAACGCCGACCCTaGGCACCCTCTACCAGGTAC | + |
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Preference number: 4 (lower is better) Translates to: DAPTQETRERHRKDKKPRSQRRP*APSTRY Trigger: GTACCTGGTAGAGGGTGCCCAGGGTCGGCGTTGTGA...TCTCGGCTTCTTGTCCTTCCTGTGCCTCTCACGTGTCTCCTGGGTTGGGGCATC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| CDS-3UTR GCA 90 bp | GAGGCAGCAGCCCACTGCACACTAAAGAGCGGGAAGAGGTATAGGCTTGTCACTAGCACCCCGGGAGGTTaGATTGCTGCTGGGGTCACC | + |
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Preference number: 4 (lower is better) Translates to: EAAAHCTLKSGKRYRLVTSTPGG*IAAGVT Trigger: GGTGACCCCAGCAGCAATGCAACCTCCCGGGGTGCT...AGTGACAAGCCTATACCTCTTCCCGCTCTTTAGTGTGCAGTGGGCTGCTGCCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| CDS-3UTR GCA 90 bp | GACCACCTCTTCACTGACAAGGGCGCTGTGTTGGGCTTGAAGGGAGGAAGGCATAGGCACACGCCTCCTTaGAAGCTCTCAAGGCCTTCC | + |
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Preference number: 4 (lower is better) Translates to: DHLFTDKGAVLGLKGGRHRHTPP*KLSRPS Trigger: GGAAGGCCTTGAGAGCTTGCAAGGAGGCGTGTGCCT...ATGCCTTCCTCCCTTCAAGCCCAACACAGCGCCCTTGTCAGTGAAGAGGTGGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| CDS-3UTR GCA 90 bp | CCACAACAGGACACTTCTTCTCATGGTAGTAGTTGTGGCCCAATAACCACCCCAGTTTGGGGCAGGGGGTaGCTCACAACGCCGACCCTG | + |
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Preference number: 4 (lower is better) Translates to: PQQDTSSHGSSCGPITTPVWGRG*LTTPTL Trigger: CAGGGTCGGCGTTGTGAGGCACCCCCTGCCCCAAAC...TGGGGTGGTTATTGGGCCACAACTACTACCATGAGAAGAAGTGTCCTGTTGTGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| CDS-3UTR GCA 90 bp | ATGAGGGCTATAGCCAGGAGGAGCCAAAGAGCTGGTAGGGCAAAGGGGGCCAAAGCAGAAGCACCTTCATaGCTCTGGTTAGGCACACGC | + |
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Preference number: 4 (lower is better) Translates to: MRAIARRSQRAGRAKGAKAEAPS*LWLGTR Trigger: GCGTGTGCCTAACCAGAGGCATGAAGGTGCTTCTGC...TTTGGCCCCCTTTGCCCTACCAGCTCTTTGGCTCCTCCTGGCTATAGCCCTCAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| CDS-3UTR GCA 90 bp | TATCGAGGTGACGGCCATACCCCGCCACCTCCCCAATGGCAATATCAACTTCCTGGGAGGTTGCATTGCTaGTGGGGTCACCTGGTATGG | + |
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Preference number: 4 (lower is better) Translates to: YRGDGHTPPPPQWQYQLPGRLHC*WGHLVW Trigger: CCATACCAGGTGACCCCAGCAGCAATGCAACCTCCC...AGGAAGTTGATATTGCCATTGGGGAGGTGGCGGGGTATGGCCGTCACCTCGATA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| CDS-3UTR CCA 90 bp | CCCTCATACCATGAATTACACTGGAGGAGCACCCCATGGACGGCTAGATTGAGGTGGGGTCACCTGGTATaGTGTCCCTCCCAGGTTCCG | + |
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Preference number: 4 (lower is better) Translates to: PSYHELHWRSTPWTARLRWGHLV*CPSQVP Trigger: CGGAACCTGGGAGGGACACCATACCAGGTGACCCCA...CCTCAATCTAGCCGTCCATGGGGTGCTCCTCCAGTGTAATTCATGGTATGAGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| CDS-3UTR TCA 90 bp | CAACAGAGATTATACTGGGGTACAGTAAGGGGAGAACAAGACAAATTGGGCCTGCCAGGTTCCGCGCTGTaGGCTGCCCCTCTGTCTCTC | + |
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Preference number: 4 (lower is better) Translates to: QQRLYWGTVRGEQDKLGLPGSAL*AAPLSL Trigger: GAGAGACAGAGGGGCAGCTCACAGCGCGGAACCTGG...CAGGCCCAATTTGTCTTGTTCTCCCCTTACTGTACCCCAGTATAATCTCTGTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| CDS-3UTR CCA 90 bp | AAGAGCGGGAAGAGGTATAGGCTTGTCACTATGGAAACAGCAACCAGTGCTAATGACTCTCCGAAGGCTTaGCCCGCCGTCTCCGCCAAC | + |
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Preference number: 4 (lower is better) Translates to: KSGKRYRLVTMETATSANDSPKA*PAVSAN Trigger: GTTGGCGGAGACGGCGGGCCAAGCCTTCGGAGAGTC...ATTAGCACTGGTTGCTGTTTCCATAGTGACAAGCCTATACCTCTTCCCGCTCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR CAA 72 bp | AGAAGGAGCTGGGAACTACAGCGCCAGAGAGATGGCTaGACCTCTGGTGGACAAAGCAACCATTTTGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: RRSWELQRQRDG*TSGGQSNHFGW Trigger: CCAGCCAAAATGGTTGCTTTGTCCACCAGAGGTCAAGCCATCTCTCTGGCGCTGTAGTTCCCAGCTCCTTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| CDS-3UTR GCA 90 bp | CAACAGAGATTATACTGGGGTACAGTAAGGGGAGAACAAGACAAATTGGGCCTGAGCAGGGCCCCGACTTaGACACCCCCTGGCCCAAAA | + |
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Preference number: 4 (lower is better) Translates to: QQRLYWGTVRGEQDKLGLSRAPT*TPPGPK Trigger: TTTTGGGCCAGGGGGTGTGCAAGTCGGGGCCCTGCT...CAGGCCCAATTTGTCTTGTTCTCCCCTTACTGTACCCCAGTATAATCTCTGTTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| CDS-3UTR CCA 90 bp | CCACAACAGGACACTTCTTCTCATGGTAGTAGTTGTGGCCCAATAACCACCCCAGCACCTTCATGCCTCTaGTTAGGCACACGCCTCCTT | + |
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Preference number: 4 (lower is better) Translates to: PQQDTSSHGSSCGPITTPAPSCL*LGTRLL Trigger: AAGGAGGCGTGTGCCTAACCAGAGGCATGAAGGTGC...TGGGGTGGTTATTGGGCCACAACTACTACCATGAGAAGAAGTGTCCTGTTGTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| CDS-3UTR CCA 90 bp | CAACAGGACACTTCTTCTCATGGTAGTAGTTGTGGCCCAATAACCACCCCAAATAGGTTGCATTGCTGCTaGGGTCACCTGGTATGGTGT | + |
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Preference number: 4 (lower is better) Translates to: QQDTSSHGSSCGPITTPNRLHCC*GHLVWC Trigger: ACACCATACCAGGTGACCCCAGCAGCAATGCAACCT...ATTTGGGGTGGTTATTGGGCCACAACTACTACCATGAGAAGAAGTGTCCTGTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| 3UTR CAA 72 bp | TTATACTGGGGTACAGTAAGGGGAGAACAAGACAAATaGGGCCTGCCACAGCAAGTGGCAGTCATCTTAGCT | + |
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Preference number: 4 (lower is better) Translates to: LYWGTVRGEQDK*GLPQQVAVILA Trigger: AGCTAAGATGACTGCCACTTGCTGTGGCAGGCCCAATTTGTCTTGTTCTCCCCTTACTGTACCCCAGTATAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| CDS-3UTR CCA 90 bp | CCACAACAGGACACTTCTTCTCATGGTAGTAGTTGTGGCCCAATAACCACCCCAGGGTCCCGTCTGATGTaGCAATTATGTAGTAATCGT | + |
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Preference number: 4 (lower is better) Translates to: PQQDTSSHGSSCGPITTPGSRLM*QLCSNR Trigger: ACGATTACTACATAATTGCCACATCAGACGGGACCC...TGGGGTGGTTATTGGGCCACAACTACTACCATGAGAAGAAGTGTCCTGTTGTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| CDS CCA 90 bp | GAAGCGGAGGTCCAGGTCTGGCCGGTCACATGTGAGAAGAAGGTTTaGGGCAGGGGGTGCCTCACAACGCCGACCCTGGGCACCCTCTAC | + |
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Preference number: 5 (lower is better) Translates to: EAEVQVWPVTCEKKV*GRGCLTTPTLGTLY Trigger: GTAGAGGGTGCCCAGGGTCGGCGTTGTGAGGCACCCCCTGCCCCAAACCTTCTTCTCACATGTGACCGGCCAGACCTGGACCTCCGCTTC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| CDS GCA 90 bp | CAGGTCTGGCCGGTCACATGTGAGAAGAAGGTTTGGGGCAGGGGGTaGCTCACAACGCCGACCCTGGGCACCCTCTACCAGGTACAGTTT | + |
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Preference number: 5 (lower is better) Translates to: QVWPVTCEKKVWGRG*LTTPTLGTLYQVQF Trigger: AAACTGTACCTGGTAGAGGGTGCCCAGGGTCGGCGTTGTGAGGCACCCCCTGCCCCAAACCTTCTTCTCACATGTGACCGGCCAGACCTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| CDS CCA 90 bp | CTCCTCGGGGACTTTGTCCCACTCGCAGAAGCACCTTCATGCCTCTaGTTAGGCACACGCCTCCTTGCAAGCTCTCAAGGCCTTCCCGGG | + |
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Preference number: 5 (lower is better) Translates to: LLGDFVPLAEAPSCL*LGTRLLASSQGLPG Trigger: CCCGGGAAGGCCTTGAGAGCTTGCAAGGAGGCGTGTGCCTAACCAGAGGCATGAAGGTGCTTCTGCGAGTGGGACAAAGTCCCCGAGGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| CDS-3UTR CAA 90 bp | CGGACACTTCCCAGGCCATTTCTGTCCAGGCCTGGTCACTTCTTGTCTGGAACGCAGCACCCCGGGAGGTaGCATTGCTGCTGGGGTCAC | + |
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Preference number: 5 (lower is better) Translates to: RTLPRPFLSRPGHFLSGTQHPGR*HCCWGH Trigger: GTGACCCCAGCAGCAATGCAACCTCCCGGGGTGCTG...CGTTCCAGACAAGAAGTGACCAGGCCTGGACAGAAATGGCCTGGGAAGTGTCCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| CDS GCA 90 bp | GGGGTCACCTGGTATGGTGTCCCTCCCAGGTTCCGCGCTGTGAGCTaGCCCTCTGTCTCTCTCCATGGGCATTTCAGACACAGGTTTTCG | + |
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Preference number: 5 (lower is better) Translates to: GVTWYGVPPRFRAVS*PSVSLHGHFRHRFS Trigger: CGAAAACCTGTGTCTGAAATGCCCATGGAGAGAGACAGAGGGGCAGCTCACAGCGCGGAACCTGGGAGGGACACCATACCAGGTGACCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| CDS TCA 90 bp | CCTGGAACCTCTTATTCGCCGAGTTCCAGTAGACAGGCTCCAGGCTaGGTCCAGATACCAGCCCCGCAAAACCTAACAGCAGCAGGGCCC | + |
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Preference number: 5 (lower is better) Translates to: PGTSYSPSSSRQAPG*VQIPAPQNLTAAGP Trigger: GGGCCCTGCTGCTGTTAGGTTTTGCGGGGCTGGTATCTGGACTCAGCCTGGAGCCTGTCTACTGGAACTCGGCGAATAAGAGGTTCCAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| CDS GCA 90 bp | CAGCTCCTCCTCGGGGACTTTGTCCCACTCGCAGAAGCACCTTCATaGCTCTGGTTAGGCACACGCCTCCTTGCAAGCTCTCAAGGCCTT | + |
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Preference number: 5 (lower is better) Translates to: QLLLGDFVPLAEAPS*LWLGTRLLASSQGL Trigger: AAGGCCTTGAGAGCTTGCAAGGAGGCGTGTGCCTAACCAGAGGCATGAAGGTGCTTCTGCGAGTGGGACAAAGTCCCCGAGGAGGAGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| CDS-3UTR CAA 90 bp | GATGCCCCAACCCAGGAGACACGTGAGAGGCACAGGAAGGACAAGAAGCCGAGACTGTATTCCTGGAACTaGATGGTGAAGCGGAGGTCC | + |
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Preference number: 5 (lower is better) Translates to: DAPTQETRERHRKDKKPRLYSWN*MVKRRS Trigger: GGACCTCCGCTTCACCATCAAGTTCCAGGAATACAG...TCTCGGCTTCTTGTCCTTCCTGTGCCTCTCACGTGTCTCCTGGGTTGGGGCATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| CDS-3UTR CAA 90 bp | GCTTCATGTCTTCCTATCAGCCACTGGCCACAACAGGACACTTCTTCTCATGGTCCCCGGGAGGTTGCATaGCTGCTGGGGTCACCTGGT | + |
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Preference number: 5 (lower is better) Translates to: ASCLPISHWPQQDTSSHGPREVA*LLGSPG Trigger: ACCAGGTGACCCCAGCAGCAATGCAACCTCCCGGGG...ACCATGAGAAGAAGTGTCCTGTTGTGGCCAGTGGCTGATAGGAAGACATGAAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| CDS-3UTR CAA 90 bp | TATCTGATGCCCATTCGGCATCAGACACAGTCCATCATGTCCACACTGCTTCATCGACTCTCCGAAGGCTaGGCCCGCCGTCTCCGCCAA | + |
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Preference number: 5 (lower is better) Translates to: YLMPIRHQTQSIMSTLLHRLSEG*ARRLRQ Trigger: TTGGCGGAGACGGCGGGCCAAGCCTTCGGAGAGTCG...ATGAAGCAGTGTGGACATGATGGACTGTGTCTGATGCCGAATGGGCATCAGATA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| CDS CCA 72 bp | AGGAGCCAGGACCAGGGTGGCGACTCTCCGAAGGCTTaGCCCGCCGTCTCCGCCAACACATGGCACCCCCAG | + |
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Preference number: 6 (lower is better) Translates to: RSQDQGGDSPKA*PAVSANTWHPQ Trigger: CTGGGGGTGCCATGTGTTGGCGGAGACGGCGGGCCAAGCCTTCGGAGAGTCGCCACCCTGGTCCTGGCTCCT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| CDS CAA 72 bp | AAGGAGCCAGGACCAGGGTGGCGACTCTCCGAAGGCTaGGCCCGCCGTCTCCGCCAACACATGGCACCCCCA | + |
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Preference number: 6 (lower is better) Translates to: KEPGPGWRLSEG*ARRLRQHMAPP Trigger: TGGGGGTGCCATGTGTTGGCGGAGACGGCGGGCCAAGCCTTCGGAGAGTCGCCACCCTGGTCCTGGCTCCTT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| CDS CCA 72 bp | CCCGGGAGGTTGCATTGCTGCTGGGGTCACCTGGTATaGTGTCCCTCCCAGGTTCCGCGCTGTGAGCTGCCC | + |
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Preference number: 6 (lower is better) Translates to: PGRLHCCWGHLV*CPSQVPRCELP Trigger: GGGCAGCTCACAGCGCGGAACCTGGGAGGGACACCATACCAGGTGACCCCAGCAGCAATGCAACCTCCCGGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| CDS CCA 72 bp | GGGGGCCTTCAGCACCCCGGGAGGTTGCATTGCTGCTaGGGTCACCTGGTATGGTGTCCCTCCCAGGTTCCG | + |
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Preference number: 6 (lower is better) Translates to: GGLQHPGRLHCC*GHLVWCPSQVP Trigger: CGGAACCTGGGAGGGACACCATACCAGGTGACCCCAGCAGCAATGCAACCTCCCGGGGTGCTGAAGGCCCCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| CDS CCA 72 bp | AGCACCCCGGGAGGTTGCATTGCTGCTGGGGTCACCTaGTATGGTGTCCCTCCCAGGTTCCGCGCTGTGAGC | + |
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Preference number: 6 (lower is better) Translates to: STPGGCIAAGVT*YGVPPRFRAVS Trigger: GCTCACAGCGCGGAACCTGGGAGGGACACCATACCAGGTGACCCCAGCAGCAATGCAACCTCCCGGGGTGCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| CDS TCA 72 bp | TCACCTGGTATGGTGTCCCTCCCAGGTTCCGCGCTGTaGGCTGCCCCTCTGTCTCTCTCCATGGGCATTTCA | + |
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Preference number: 6 (lower is better) Translates to: SPGMVSLPGSAL*AAPLSLSMGIS Trigger: TGAAATGCCCATGGAGAGAGACAGAGGGGCAGCTCACAGCGCGGAACCTGGGAGGGACACCATACCAGGTGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| CDS GCA 72 bp | AGCACCTTCATGCCTCTGGTTAGGCACACGCCTCCTTaGAAGCTCTCAAGGCCTTCCCGGGTCCCGTCTGAT | + |
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Preference number: 6 (lower is better) Translates to: STFMPLVRHTPP*KLSRPSRVPSD Trigger: ATCAGACGGGACCCGGGAAGGCCTTGAGAGCTTGCAAGGAGGCGTGTGCCTAACCAGAGGCATGAAGGTGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| CDS GCA 72 bp | CTCGGGGACTTTGTCCCACTCGCAGAAGCACCTTCATaGCTCTGGTTAGGCACACGCCTCCTTGCAAGCTCT | + |
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Preference number: 6 (lower is better) Translates to: LGDFVPLAEAPS*LWLGTRLLASS Trigger: AGAGCTTGCAAGGAGGCGTGTGCCTAACCAGAGGCATGAAGGTGCTTCTGCGAGTGGGACAAAGTCCCCGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| CDS CCA 72 bp | GACTTTGTCCCACTCGCAGAAGCACCTTCATGCCTCTaGTTAGGCACACGCCTCCTTGCAAGCTCTCAAGGC | + |
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Preference number: 6 (lower is better) Translates to: DFVPLAEAPSCL*LGTRLLASSQG Trigger: GCCTTGAGAGCTTGCAAGGAGGCGTGTGCCTAACCAGAGGCATGAAGGTGCTTCTGCGAGTGGGACAAAGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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| CDS TCA 72 bp | TCTTATTCGCCGAGTTCCAGTAGACAGGCTCCAGGCTaGGTCCAGATACCAGCCCCGCAAAACCTAACAGCA | + |
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Preference number: 6 (lower is better) Translates to: SYSPSSSRQAPG*VQIPAPQNLTA Trigger: TGCTGTTAGGTTTTGCGGGGCTGGTATCTGGACTCAGCCTGGAGCCTGTCTACTGGAACTCGGCGAATAAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004036.6 |
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