Pregenerated sensors for EFNA5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048915Ensembl transcript IDs: ENSMUST00000076840.12, ENSMUST00000078839.5
Found 108 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CATAAGTATTGTATAGGAGAGGGCACCCCTCTCAGGCCTGGACATTaGAGGCAGCATCTGCCGCCATTCTTTCTTGTGTGCATATGGTGG | + |
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Preference number: 1 (lower is better) Translates to: HKYCIGEGTPLRPGH*RQHLPPFFLVCIWW Trigger: CCACCATATGCACACAAGAAAGAATGGCGGCAGATGCTGCCTGCAATGTCCAGGCCTGAGAGGGGTGCCCTCTCCTATACAATACTTATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR GCA 90 bp | ATTGGGGAAAGGCCACAGCACACTGGAGCTCCAGCAAAGCCAAATTaGATCTCCTCTGGTCAGACTCTCTTTCCTTGTACATATTGTCCC | + |
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Preference number: 1 (lower is better) Translates to: IGERPQHTGAPAKPN*ISSGQTLFPCTYCP Trigger: GGGACAATATGTACAAGGAAAGAGAGTCTGACCAGAGGAGATGCAATTTGGCTTTGCTGGAGCTCCAGTGTGCTGTGGCCTTTCCCCAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR GCA 90 bp | GTTCTGTTTCAGTGGAAATGTTGGGTGCCTTCTGTGATGAGACTCTaGTACTCCAGAGAAGTCTCAGATGTTGGGAGAAGAGGGGAGAGG | + |
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Preference number: 1 (lower is better) Translates to: VLFQWKCWVPSVMRL*YSREVSDVGRRGER Trigger: CCTCTCCCCTCTTCTCCCAACATCTGAGACTTCTCTGGAGTAGCAGAGTCTCATCACAGAAGGCACCCAACATTTCCACTGAAACAGAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR CCA 90 bp | CCCAGAGGAGTAGCCAAAGCTATTCCACTCTCTACTCATCAACCCTaGCTTGGCAGCCTTGGGGAAGGTCACTTTATTCATAAAAATGCC | + |
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Preference number: 1 (lower is better) Translates to: PRGVAKAIPLSTHQP*LGSLGEGHFIHKNA Trigger: GGCATTTTTATGAATAAAGTGACCTTCCCCAAGGCTGCCAAGCCAGGGTTGATGAGTAGAGAGTGGAATAGCTTTGGCTACTCCTCTGGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR CCA 90 bp | GGCAAAGAAATCCAATGCTTTGAAGTTCTGTTTCAGTGGAAATGTTaGGTGCCTTCTGTGATGAGACTCTGCTACTCCAGAGAAGTCTCA | + |
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Preference number: 1 (lower is better) Translates to: GKEIQCFEVLFQWKC*VPSVMRLCYSREVS Trigger: TGAGACTTCTCTGGAGTAGCAGAGTCTCATCACAGAAGGCACCCAACATTTCCACTGAAACAGAACTTCAAAGCATTGGATTTCTTTGCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR CCA 90 bp | ATGAAAGACAATGGCAGAGAGGGCCATGAGGAATTGTTTCATCATTaGTTAGAGACAAATGCTAGAATCACAGGACTCACCATTTCTACA | + |
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Preference number: 1 (lower is better) Translates to: MKDNGREGHEELFHH*LETNARITGLTIST Trigger: TGTAGAAATGGTGAGTCCTGTGATTCTAGCATTTGTCTCTAACCAATGATGAAACAATTCCTCATGGCCCTCTCTGCCATTGTCTTTCAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR GCA 90 bp | ACTGGAATCACCATAGGATCACTTGGTGTCCTTGACTGTAGTACATaGAGTATTATCTTGGTTCTATCGATCCATCTTAGAAGGGATTTT | + |
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Preference number: 1 (lower is better) Translates to: TGITIGSLGVLDCST*SIILVLSIHLRRDF Trigger: AAAATCCCTTCTAAGATGGATCGATAGAACCAAGATAATACTGCATGTACTACAGTCAAGGACACCAAGTGATCCTATGGTGATTCCAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR CCA 90 bp | ATAAATAAAGGCAAAGAAATCCAATGCTTTGAAGTTCTGTTTCAGTaGAAATGTTGGGTGCCTTCTGTGATGAGACTCTGCTACTCCAGA | + |
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Preference number: 1 (lower is better) Translates to: INKGKEIQCFEVLFQ*KCWVPSVMRLCYSR Trigger: TCTGGAGTAGCAGAGTCTCATCACAGAAGGCACCCAACATTTCCACTGAAACAGAACTTCAAAGCATTGGATTTCTTTGCCTTTATTTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR-3UTR TCA 90 bp | GTAGTGCTGACTGACTCTCCTGGTGATAGGGGTCTGTGTCTGAGTCCCCTGTGGAGGGGTAGGGTGGGGTaGAGGAGGCAGCAACTGGTT | + |
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Preference number: 2 (lower is better) Translates to: VVLTDSPGDRGLCLSPLWRGRVG*RRQQLV Trigger: AACCAGTTGCTGCCTCCTTCACCCCACCCTACCCCT...CCACAGGGGACTCAGACACAGACCCCTATCACCAGGAGAGTCAGTCAGCACTAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR CAA 90 bp | GGCTGGCGACTCCGGTCACATGGTTCAGGTGAGAGCAGACTCCAGTaGCCTCCACTCCAAAGGGACCAGGTAAGTAAGCCCAGCTTACAT | + |
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Preference number: 2 (lower is better) Translates to: GWRLRSHGSGESRLQ*PPLQRDQVSKPSLH Trigger: ATGTAAGCTGGGCTTACTTACCTGGTCCCTTTGGAGTGGAGGCAACTGGAGTCTGCTCTCACCTGAACCATGTGACCGGAGTCGCCAGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR-3UTR CCA 90 bp | TGCAAAGCCCTTGGCAACCAGGGGCAAAGGTCGCTGGGGTTTGACCAACTGGGGGTCGTTAGGACTAACTaGAATCACCATAGGATCACT | + |
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Preference number: 2 (lower is better) Translates to: CKALGNQGQRSLGFDQLGVVRTN*NHHRIT Trigger: AGTGATCCTATGGTGATTCCAGTTAGTCCTAACGAC...CCCCAGTTGGTCAAACCCCAGCGACCTTTGCCCCTGGTTGCCAAGGGCTTTGCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR-3UTR GCA 90 bp | CAGATGTTGGGAGAAGAGGGGAGAGGACTAACTATATCTTTGAGGCTGGCGACTAGAGCAGACTCCAGTTaGCTCCACTCCAAAGGGACC | + |
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Preference number: 2 (lower is better) Translates to: QMLGEEGRGLTISLRLATRADSS*LHSKGT Trigger: GGTCCCTTTGGAGTGGAGGCAACTGGAGTCTGCTCT...AGTCGCCAGCCTCAAAGATATAGTTAGTCCTCTCCCCTCTTCTCCCAACATCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR-3UTR CCA 90 bp | TATTGTCCCCAGAGGAGTAGCCAAAGCTATTCCACTCTCTACTCATCAACCCTGCACCCCTCTCAGGCCTaGACATTGCAGGCAGCATCT | + |
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Preference number: 2 (lower is better) Translates to: YCPQRSSQSYSTLYSSTLHPSQA*TLQAAS Trigger: AGATGCTGCCTGCAATGTCCAGGCCTGAGAGGGGTG...CAGGGTTGATGAGTAGAGAGTGGAATAGCTTTGGCTACTCCTCTGGGGACAATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR-3UTR CCA 90 bp | CACTGGAGCTCCAGCAAAGCCAAATTGCATCTCCTCTGGTCAGACTCTCTTTCCTCTACTCATCAACCCTaGCTTGGCAGCCTTGGGGAA | + |
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Preference number: 2 (lower is better) Translates to: HWSSSKAKLHLLWSDSLSSTHQP*LGSLGE Trigger: TTCCCCAAGGCTGCCAAGCCAGGGTTGATGAGTAGA...GGAAAGAGAGTCTGACCAGAGGAGATGCAATTTGGCTTTGCTGGAGCTCCAGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR CAA 90 bp | TGCTGCTGTCACTCTGACAATCTGGCATTTTTATCTGGACTCCGTTaGATTGGGAAGGGGATGAGAGGAGTCAAGGGCAAGGGCTTAGGG | + |
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Preference number: 2 (lower is better) Translates to: CCCHSDNLAFLSGLR*IGKGMRGVKGKGLG Trigger: CCCTAAGCCCTTGCCCTTGACTCCTCTCATCCCCTTCCCAATCAAACGGAGTCCAGATAAAAATGCCAGATTGTCAGAGTGACAGCAGCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR CAA 90 bp | AATTGGGGAAAGGCCACAGCACACTGGAGCTCCAGCAAAGCCAAATaGCATCTCCTCTGGTCAGACTCTCTTTCCTTGTACATATTGTCC | + |
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Preference number: 2 (lower is better) Translates to: NWGKATAHWSSSKAK*HLLWSDSLSLYILS Trigger: GGACAATATGTACAAGGAAAGAGAGTCTGACCAGAGGAGATGCAATTTGGCTTTGCTGGAGCTCCAGTGTGCTGTGGCCTTTCCCCAATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR-3UTR TCA 90 bp | CATCTTGTTTATCTCCCACAGATAAACACGCGTTTCCCCCTACGCTTTAGGCTGAGTCCCTTCTTGGGATaGGCAGTTAGGTGGATCTCT | + |
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Preference number: 2 (lower is better) Translates to: HLVYLPQINTRFPLRFRLSPFLG*AVRWIS Trigger: AGAGATCCACCTAACTGCTCATCCCAAGAAGGGACT...CAGCCTAAAGCGTAGGGGGAAACGCGTGTTTATCTGTGGGAGATAAACAAGATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR-3UTR TCA 90 bp | GTAGTGCTGACTGACTCTCCTGGTGATAGGGGTCTGTGTCTGAGTCCCCTGTGGATAAAAACTAGTATCTaGACCTTTGCAAAGCCTGCT | + |
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Preference number: 2 (lower is better) Translates to: VVLTDSPGDRGLCLSPLWIKTSI*TFAKPA Trigger: AGCAGGCTTTGCAAAGGTTCAGATACTAGTTTTTAT...CCACAGGGGACTCAGACACAGACCCCTATCACCAGGAGAGTCAGTCAGCACTAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR-3UTR GCA 90 bp | ACAGATCTTTATTCCCTGCTTCATGTTGCAAAGCCCTTGGCAACCAGGGGCAAAAGGGGCTTCAAGGGCTaGCCTTCCTGTTTTTCCATT | + |
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Preference number: 2 (lower is better) Translates to: TDLYSLLHVAKPLATRGKRGFKG*PSCFSI Trigger: AATGGAAAAACAGGAAGGGCAGCCCTTGAAGCCCCT...TTTGCCCCTGGTTGCCAAGGGCTTTGCAACATGAAGCAGGGAATAAAGATCTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR-3UTR TCA 90 bp | ACAGATCTTTATTCCCTGCTTCATGTTGCAAAGCCCTTGGCAACCAGGGGCAAAACTTTTCCATTGGTCTaGCACTATTCCCTGTCTCGC | + |
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Preference number: 2 (lower is better) Translates to: TDLYSLLHVAKPLATRGKTFPLV*HYSLSR Trigger: GCGAGACAGGGAATAGTGTCAGACCAATGGAAAAGT...TTTGCCCCTGGTTGCCAAGGGCTTTGCAACATGAAGCAGGGAATAAAGATCTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR-3UTR GCA 90 bp | ACAGATCTTTATTCCCTGCTTCATGTTGCAAAGCCCTTGGCAACCAGGGGCAAAGCTTACATTCCAACGTaGGTACAACTCTCTAGGGTG | + |
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Preference number: 2 (lower is better) Translates to: TDLYSLLHVAKPLATRGKAYIPT*VQLSRV Trigger: CACCCTAGAGAGTTGTACGCACGTTGGAATGTAAGC...TTTGCCCCTGGTTGCCAAGGGCTTTGCAACATGAAGCAGGGAATAAAGATCTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR-3UTR CCA 90 bp | CACTGGAGCTCCAGCAAAGCCAAATTGCATCTCCTCTGGTCAGACTCTCTTTCCTCTGGCATTTTTATCTaGACTCCGTTTGATTGGGAA | + |
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Preference number: 2 (lower is better) Translates to: HWSSSKAKLHLLWSDSLSSGIFI*TPFDWE Trigger: TTCCCAATCAAACGGAGTCCAGATAAAAATGCCAGA...GGAAAGAGAGTCTGACCAGAGGAGATGCAATTTGGCTTTGCTGGAGCTCCAGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR-3UTR CCA 90 bp | GTTGCACCACATCCTAAGCCCACAGAGGATTGTAACACCACCACAAAAAGCCACGAAGTTCTGTTTCAGTaGAAATGTTGGGTGCCTTCT | + |
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Preference number: 2 (lower is better) Translates to: VAPHPKPTEDCNTTTKSHEVLFQ*KCWVPS Trigger: AGAAGGCACCCAACATTTCCACTGAAACAGAACTTC...GTGGCTTTTTGTGGTGGTGTTACAATCCTCTGTGGGCTTAGGATGTGGTGCAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR-3UTR TCA 90 bp | CACTGGAGCTCCAGCAAAGCCAAATTGCATCTCCTCTGGTCAGACTCTCTTTCCGTTGTAGCACCATGGTaGACTGTATTCAAAGATTTA | + |
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Preference number: 2 (lower is better) Translates to: HWSSSKAKLHLLWSDSLSVVAPW*TVFKDL Trigger: TAAATCTTTGAATACAGTTCACCATGGTGCTACAAC...GGAAAGAGAGTCTGACCAGAGGAGATGCAATTTGGCTTTGCTGGAGCTCCAGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR-3UTR CCA 90 bp | CTCGGCCATGCTAAGTTTCTTTCAACAGGGTCATCCCATGTTCATTCTTCTGCCGTCACTCTGACAATCTaGCATTTTTATCTGGACTCC | + |
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Preference number: 2 (lower is better) Translates to: LGHAKFLSTGSSHVHSSAVTLTI*HFYLDS Trigger: GGAGTCCAGATAAAAATGCCAGATTGTCAGAGTGAC...GGCAGAAGAATGAACATGGGATGACCCTGTTGAAAGAAACTTAGCATGGCCGAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR-3UTR CCA 90 bp | GTTGCACCACATCCTAAGCCCACAGAGGATTGTAACACCACCACAAAAAGCCACAGATCACTTTTCCATTaGTCTGACACTATTCCCTGT | + |
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Preference number: 2 (lower is better) Translates to: VAPHPKPTEDCNTTTKSHRSLFH*SDTIPC Trigger: ACAGGGAATAGTGTCAGACCAATGGAAAAGTGATCT...GTGGCTTTTTGTGGTGGTGTTACAATCCTCTGTGGGCTTAGGATGTGGTGCAAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR-3UTR TCA 90 bp | AAATTGCATCTCCTCTGGTCAGACTCTCTTTCCTTGTACATATTGTCCCCAGAGCTGCTGCTGTCACTCTaGCAATCTGGCATTTTTATC | + |
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Preference number: 2 (lower is better) Translates to: KLHLLWSDSLSLYILSPELLLSL*QSGIFI Trigger: GATAAAAATGCCAGATTGTCAGAGTGACAGCAGCAG...CTCTGGGGACAATATGTACAAGGAAAGAGAGTCTGACCAGAGGAGATGCAATTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR-3UTR TCA 90 bp | ACAGATCTTTATTCCCTGCTTCATGTTGCAAAGCCCTTGGCAACCAGGGGCAAAAGGCATGGTTTCTATTaGTGTCGTGCAATAGCAAAA | + |
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Preference number: 2 (lower is better) Translates to: TDLYSLLHVAKPLATRGKRHGFY*CRAIAK Trigger: TTTTGCTATTGCACGACATCAATAGAAACCATGCCT...TTTGCCCCTGGTTGCCAAGGGCTTTGCAACATGAAGCAGGGAATAAAGATCTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR-3UTR GCA 90 bp | CAGATGTTGGGAGAAGAGGGGAGAGGACTAACTATATCTTTGAGGCTGGCGACTTTGCATTTACTGACTTaGTTGTTTACAAAGGCATGG | + |
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Preference number: 2 (lower is better) Translates to: QMLGEEGRGLTISLRLATLHLLT*LFTKAW Trigger: CCATGCCTTTGTAAACAAGCAAGTCAGTAAATGCAA...AGTCGCCAGCCTCAAAGATATAGTTAGTCCTCTCCCCTCTTCTCCCAACATCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR-3UTR CCA 90 bp | GTCAAAGTCTTTGGGACTCCATCTTGTTTATCTCCCACAGATAAACACGCGTTTATCCAACCTTCCTCCTaGGAGAAAAGGCTTCTTCAA | + |
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Preference number: 2 (lower is better) Translates to: VKVFGTPSCLSPTDKHAFIQPSS*EKRLLQ Trigger: TTGAAGAAGCCTTTTCTCCCAGGAGGAAGGTTGGAT...AAACGCGTGTTTATCTGTGGGAGATAAACAAGATGGAGTCCCAAAGACTTTGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR-3UTR CCA 90 bp | CCCTACGCTTTAGGCTGTGTCAGAAAGGGAAAGGATAGAACATCAACACTTGAAAAATTGCATCTCCTCTaGTCAGACTCTCTTTCCTTG | + |
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Preference number: 2 (lower is better) Translates to: PYALGCVRKGKDRTSTLEKLHLL*SDSLSL Trigger: CAAGGAAAGAGAGTCTGACCAGAGGAGATGCAATTT...TTCAAGTGTTGATGTTCTATCCTTTCCCTTTCTGACACAGCCTAAAGCGTAGGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR-3UTR CCA 90 bp | TTAGCTAAGATTATGTCACAGGTAAAAAGCATATTGTCTACTGGCGTGGATAGTAAGGCCACAGCACACTaGAGCTCCAGCAAAGCCAAA | + |
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Preference number: 2 (lower is better) Translates to: LAKIMSQVKSILSTGVDSKATAH*SSSKAK Trigger: TTTGGCTTTGCTGGAGCTCCAGTGTGCTGTGGCCTT...ACTATCCACGCCAGTAGACAATATGCTTTTTACCTGTGACATAATCTTAGCTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR-3UTR CCA 90 bp | CAGATGTTGGGAGAAGAGGGGAGAGGACTAACTATATCTTTGAGGCTGGCGACTTTTTGTCAAAGTCTTTaGGACTCCATCTTGTTTATC | + |
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Preference number: 2 (lower is better) Translates to: QMLGEEGRGLTISLRLATFCQSL*DSILFI Trigger: GATAAACAAGATGGAGTCCCAAAGACTTTGACAAAA...AGTCGCCAGCCTCAAAGATATAGTTAGTCCTCTCCCCTCTTCTCCCAACATCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR-3UTR CCA 90 bp | TTAGCTAAGATTATGTCACAGGTAAAAAGCATATTGTCTACTGGCGTGGATAGTCTGGCTTGGCAGCCTTaGGGAAGGTCACTTTATTCA | + |
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Preference number: 2 (lower is better) Translates to: LAKIMSQVKSILSTGVDSLAWQP*GRSLYS Trigger: TGAATAAAGTGACCTTCCCCAAGGCTGCCAAGCCAG...ACTATCCACGCCAGTAGACAATATGCTTTTTACCTGTGACATAATCTTAGCTAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR CAA 90 bp | GTGCAGTTCGTTCACAGCTGCCTTCCACTCACATATTTTTCTAATTaGAAACCACTCGAAATTCTAAGCAATTTCCGATCCATGAAGTCC | + |
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Preference number: 2 (lower is better) Translates to: VQFVHSCLPLTYFSN*KPLEILSNFRSMKS Trigger: GGACTTCATGGATCGGAAATTGCTTAGAATTTCGAGTGGTTTCAAATTAGAAAAATATGTGAGTGGAAGGCAGCTGTGAACGAACTGCAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR-3UTR CAA 90 bp | TGCAAAGCCCTTGGCAACCAGGGGCAAAGGTCGCTGGGGTTTGACCAACTGGGGGTATCGGGGTGGGAATaGGGGAAAGGCCACAGCACA | + |
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Preference number: 3 (lower is better) Translates to: CKALGNQGQRSLGFDQLGVSGWE*GKGHST Trigger: TGTGCTGTGGCCTTTCCCCAATTCCCACCCCGATAC...CCCCAGTTGGTCAAACCCCAGCGACCTTTGCCCCTGGTTGCCAAGGGCTTTGCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR CCA 72 bp | TCTCCTGGTGATAGGGGTCTGTGTCTGAGTCCCCTGTaGTCACGGAGCAAGGAGCAGAACGTGGGTATCGGG | + |
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Preference number: 3 (lower is better) Translates to: SPGDRGLCLSPL*SRSKEQNVGIG Trigger: CCCGATACCCACGTTCTGCTCCTTGCTCCGTGACCACAGGGGACTCAGACACAGACCCCTATCACCAGGAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR-3UTR CAA 90 bp | TGCAAAGCCCTTGGCAACCAGGGGCAAAGGTCGCTGGGGTTTGACCAACTGGGGAAACCAACTACCGAGTaGCACCACATCCTAAGCCCA | + |
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Preference number: 3 (lower is better) Translates to: CKALGNQGQRSLGFDQLGKPTTE*HHILSP Trigger: TGGGCTTAGGATGTGGTGCAACTCGGTAGTTGGTTT...CCCCAGTTGGTCAAACCCCAGCGACCTTTGCCCCTGGTTGCCAAGGGCTTTGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR TCA 72 bp | TCTTTGAGGCTGGCGACTCCGGTCACATGGTTCAGGTaGGAGCAGACTCCAGTTGCCTCCACTCCAAAGGGA | + |
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Preference number: 3 (lower is better) Translates to: SLRLATPVTWFR*EQTPVASTPKG Trigger: TCCCTTTGGAGTGGAGGCAACTGGAGTCTGCTCTCACCTGAACCATGTGACCGGAGTCGCCAGCCTCAAAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR GCA 72 bp | TGTATAGGAGAGGGCACCCCTCTCAGGCCTGGACATTaGAGGCAGCATCTGCCGCCATTCTTTCTTGTGTGC | + |
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Preference number: 3 (lower is better) Translates to: CIGEGTPLRPGH*RQHLPPFFLVC Trigger: GCACACAAGAAAGAATGGCGGCAGATGCTGCCTGCAATGTCCAGGCCTGAGAGGGGTGCCCTCTCCTATACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR CCA 72 bp | GGAGACCCCCACTGCTTGTGTTTCCTGGCAATCAGCTaGAACCAACCCCTCGGCCATGCTAAGTTTCTTTCA | + |
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Preference number: 3 (lower is better) Translates to: GDPHCLCFLAIS*NQPLGHAKFLS Trigger: TGAAAGAAACTTAGCATGGCCGAGGGGTTGGTTCCAGCTGATTGCCAGGAAACACAAGCAGTGGGGGTCTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR-3UTR CAA 90 bp | GTCAAAGTCTTTGGGACTCCATCTTGTTTATCTCCCACAGATAAACACGCGTTTTCTCAGGCCTGGACATaGCAGGCAGCATCTGCCGCC | + |
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Preference number: 3 (lower is better) Translates to: VKVFGTPSCLSPTDKHAFSQAWT*QAASAA Trigger: GGCGGCAGATGCTGCCTGCAATGTCCAGGCCTGAGA...AAACGCGTGTTTATCTGTGGGAGATAAACAAGATGGAGTCCCAAAGACTTTGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR-3UTR CAA 90 bp | AGACTCTCTTTCCTTGTACATATTGTCCCCAGAGGAGTAGCCAAAGCTATTCCACTCATCAACCCTGGCTaGGCAGCCTTGGGGAAGGTC | + |
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Preference number: 3 (lower is better) Translates to: RLSFLVHIVPRGVAKAIPLINPG*AALGKV Trigger: GACCTTCCCCAAGGCTGCCAAGCCAGGGTTGATGAG...TGGAATAGCTTTGGCTACTCCTCTGGGGACAATATGTACAAGGAAAGAGAGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR GCA 72 bp | AGGCCACAGCACACTGGAGCTCCAGCAAAGCCAAATTaGATCTCCTCTGGTCAGACTCTCTTTCCTTGTACA | + |
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Preference number: 3 (lower is better) Translates to: RPQHTGAPAKPN*ISSGQTLFPCT Trigger: TGTACAAGGAAAGAGAGTCTGACCAGAGGAGATGCAATTTGGCTTTGCTGGAGCTCCAGTGTGCTGTGGCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR-3UTR CAA 90 bp | CAGATGTTGGGAGAAGAGGGGAGAGGACTAACTATATCTTTGAGGCTGGCGACTTCCAGCAAAGCCAAATaGCATCTCCTCTGGTCAGAC | + |
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Preference number: 3 (lower is better) Translates to: QMLGEEGRGLTISLRLATSSKAK*HLLWSD Trigger: GTCTGACCAGAGGAGATGCAATTTGGCTTTGCTGGA...AGTCGCCAGCCTCAAAGATATAGTTAGTCCTCTCCCCTCTTCTCCCAACATCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR-3UTR CAA 90 bp | CAGATGTTGGGAGAAGAGGGGAGAGGACTAACTATATCTTTGAGGCTGGCGACTTTATCTGGACTCCGTTaGATTGGGAAGGGGATGAGA | + |
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Preference number: 3 (lower is better) Translates to: QMLGEEGRGLTISLRLATLSGLR*IGKGMR Trigger: TCTCATCCCCTTCCCAATCAAACGGAGTCCAGATAA...AGTCGCCAGCCTCAAAGATATAGTTAGTCCTCTCCCCTCTTCTCCCAACATCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| 3UTR-3UTR CAA 90 bp | AGACTCTCTTTCCTTGTACATATTGTCCCCAGAGGAGTAGCCAAAGCTATTCCACCTGGCTTGGCAGCCTaGGGGAAGGTCACTTTATTC | + |
|
Preference number: 3 (lower is better) Translates to: RLSFLVHIVPRGVAKAIPPGLAA*GKVTLF Trigger: GAATAAAGTGACCTTCCCCAAGGCTGCCAAGCCAGG...TGGAATAGCTTTGGCTACTCCTCTGGGGACAATATGTACAAGGAAAGAGAGTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| 3UTR GCA 72 bp | CAGCTTACATTCCAACGTGCGTACAACTCTCTAGGGTaGAGTTCGTTCACAGCTGCCTTCCACTCACATATT | + |
|
Preference number: 3 (lower is better) Translates to: QLTFQRAYNSLG*SSFTAAFHSHI Trigger: AATATGTGAGTGGAAGGCAGCTGTGAACGAACTGCACCCTAGAGAGTTGTACGCACGTTGGAATGTAAGCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| 3UTR GCA 72 bp | CAGTGGAAATGTTGGGTGCCTTCTGTGATGAGACTCTaGTACTCCAGAGAAGTCTCAGATGTTGGGAGAAGA | + |
|
Preference number: 3 (lower is better) Translates to: QWKCWVPSVMRL*YSREVSDVGRR Trigger: TCTTCTCCCAACATCTGAGACTTCTCTGGAGTAGCAGAGTCTCATCACAGAAGGCACCCAACATTTCCACTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| 3UTR CCA 72 bp | GTAGCCAAAGCTATTCCACTCTCTACTCATCAACCCTaGCTTGGCAGCCTTGGGGAAGGTCACTTTATTCAT | + |
|
Preference number: 3 (lower is better) Translates to: VAKAIPLSTHQP*LGSLGEGHFIH Trigger: ATGAATAAAGTGACCTTCCCCAAGGCTGCCAAGCCAGGGTTGATGAGTAGAGAGTGGAATAGCTTTGGCTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| 3UTR CCA 72 bp | CACTGGAGCTCCAGCAAAGCCAAATTGCATCTCCTCTaGTCAGACTCTCTTTCCTTGTACATATTGTCCCCA | + |
|
Preference number: 3 (lower is better) Translates to: HWSSSKAKLHLL*SDSLSLYILSP Trigger: TGGGGACAATATGTACAAGGAAAGAGAGTCTGACCAGAGGAGATGCAATTTGGCTTTGCTGGAGCTCCAGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| 3UTR-3UTR CAA 90 bp | CACTGGAGCTCCAGCAAAGCCAAATTGCATCTCCTCTGGTCAGACTCTCTTTCCAACAACCCCAAGTTGTaGCTTAGAAATCAGGCTGAA | + |
|
Preference number: 3 (lower is better) Translates to: HWSSSKAKLHLLWSDSLSNNPKL*LRNQAE Trigger: TTCAGCCTGATTTCTAAGCAACAACTTGGGGTTGTT...GGAAAGAGAGTCTGACCAGAGGAGATGCAATTTGGCTTTGCTGGAGCTCCAGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| 3UTR-3UTR CAA 90 bp | GTTGCACCACATCCTAAGCCCACAGAGGATTGTAACACCACCACAAAAAGCCACCTGACACCAATCATCTaGAAAACTCTGCACAAGCGT | + |
|
Preference number: 3 (lower is better) Translates to: VAPHPKPTEDCNTTTKSHLTPII*KTLHKR Trigger: ACGCTTGTGCAGAGTTTTCAAGATGATTGGTGTCAG...GTGGCTTTTTGTGGTGGTGTTACAATCCTCTGTGGGCTTAGGATGTGGTGCAAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| 3UTR TCA 72 bp | ATCTGCCAAAAACCAATAACAAGTCCCTTCTTGGGATaGGCAGTTAGGTGGATCTCTGGTGTTCCAAGACCC | + |
|
Preference number: 3 (lower is better) Translates to: ICQKPITSPFLG*AVRWISGVPRP Trigger: GGGTCTTGGAACACCAGAGATCCACCTAACTGCTCATCCCAAGAAGGGACTTGTTATTGGTTTTTGGCAGAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| 3UTR-3UTR CAA 90 bp | CCCTACGCTTTAGGCTGTGTCAGAAAGGGAAAGGATAGAACATCAACACTTGAACTAGTATCTGAACCTTaGCAAAGCCTGCTCACTTCC | + |
|
Preference number: 3 (lower is better) Translates to: PYALGCVRKGKDRTSTLELVSEP*QSLLTS Trigger: GGAAGTGAGCAGGCTTTGCAAAGGTTCAGATACTAG...TTCAAGTGTTGATGTTCTATCCTTTCCCTTTCTGACACAGCCTAAAGCGTAGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| 3UTR-3UTR CAA 90 bp | GTTGCACCACATCCTAAGCCCACAGAGGATTGTAACACCACCACAAAAAGCCACAAGAAATCCAATGCTTaGAAGTTCTGTTTCAGTGGA | + |
|
Preference number: 3 (lower is better) Translates to: VAPHPKPTEDCNTTTKSHKKSNA*KFCFSG Trigger: TCCACTGAAACAGAACTTCAAAGCATTGGATTTCTT...GTGGCTTTTTGTGGTGGTGTTACAATCCTCTGTGGGCTTAGGATGTGGTGCAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| 3UTR-3UTR CAA 90 bp | TTAGCTAAGATTATGTCACAGGTAAAAAGCATATTGTCTACTGGCGTGGATAGTCCCAACAACCCCAAGTaGTTGCTTAGAAATCAGGCT | + |
|
Preference number: 3 (lower is better) Translates to: LAKIMSQVKSILSTGVDSPNNPK*LLRNQA Trigger: AGCCTGATTTCTAAGCAACAACTTGGGGTTGTTGGG...ACTATCCACGCCAGTAGACAATATGCTTTTTACCTGTGACATAATCTTAGCTAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| 3UTR-3UTR CAA 90 bp | TTAGCTAAGATTATGTCACAGGTAAAAAGCATATTGTCTACTGGCGTGGATAGTTGCCGCCATTCTTTCTaGTGTGCATATGGTGGATAC | + |
|
Preference number: 3 (lower is better) Translates to: LAKIMSQVKSILSTGVDSCRHSF*CAYGGY Trigger: GTATCCACCATATGCACACAAGAAAGAATGGCGGCA...ACTATCCACGCCAGTAGACAATATGCTTTTTACCTGTGACATAATCTTAGCTAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| 3UTR GCA 72 bp | ACCATAGGATCACTTGGTGTCCTTGACTGTAGTACATaGAGTATTATCTTGGTTCTATCGATCCATCTTAGA | + |
|
Preference number: 3 (lower is better) Translates to: TIGSLGVLDCST*SIILVLSIHLR Trigger: TCTAAGATGGATCGATAGAACCAAGATAATACTGCATGTACTACAGTCAAGGACACCAAGTGATCCTATGGT 40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| 3UTR CAA 72 bp | CTCCGGTCACATGGTTCAGGTGAGAGCAGACTCCAGTaGCCTCCACTCCAAAGGGACCAGGTAAGTAAGCCC | + |
|
Preference number: 4 (lower is better) Translates to: LRSHGSGESRLQ*PPLQRDQVSKP Trigger: GGGCTTACTTACCTGGTCCCTTTGGAGTGGAGGCAACTGGAGTCTGCTCTCACCTGAACCATGTGACCGGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| CDS-3UTR CCA 90 bp | CAGCACACTGGAGCTCCAGCAAAGCCAAATTGCATCTCCTCTGGTCAGACTCTCCTTCAGCGGTCCGTTTaGGGAGTGAGGCCGGTTACA | + |
|
Preference number: 4 (lower is better) Translates to: QHTGAPAKPNCISSGQTLLQRSV*GVRPVT Trigger: TGTAACCGGCCTCACTCCCCAAACGGACCGCTGAAG...GAGAGTCTGACCAGAGGAGATGCAATTTGGCTTTGCTGGAGCTCCAGTGTGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| CDS-3UTR TCA 90 bp | CAGATGTTGGGAGAAGAGGGGAGAGGACTAACTATATCTTTGAGGCTGGCGACTGCGGGATGGCTCGGCTaGCTCATGTACGGTGTCATC | + |
|
Preference number: 4 (lower is better) Translates to: QMLGEEGRGLTISLRLATAGWLG*LMYGVI Trigger: GATGACACCGTACATGAGTCAGCCGAGCCATCCCGC...AGTCGCCAGCCTCAAAGATATAGTTAGTCCTCTCCCCTCTTCTCCCAACATCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| CDS-3UTR GCA 90 bp | TATTGTCCCCAGAGGAGTAGCCAAAGCTATTCCACTCTCTACTCATCAACCCTGGGTATCCTTGGTGTCTaGGCCGCGTTCTCACCGCGG | + |
|
Preference number: 4 (lower is better) Translates to: YCPQRSSQSYSTLYSSTLGILGV*AAFSPR Trigger: CCGCGGTGAGAACGCGGCGCAGACACCAAGGATACC...CAGGGTTGATGAGTAGAGAGTGGAATAGCTTTGGCTACTCCTCTGGGGACAATA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| CDS-3UTR TCA 90 bp | TGCAAAGCCCTTGGCAACCAGGGGCAAAGGTCGCTGGGGTTTGACCAACTGGGGCTAAAGAAAAGGGAGTaGAGAGCTGGAATTTTTCCG | + |
|
Preference number: 4 (lower is better) Translates to: CKALGNQGQRSLGFDQLGLKKRE*RAGIFP Trigger: CGGAAAAATTCCAGCTCTTCACTCCCTTTTCTTTAG...CCCCAGTTGGTCAAACCCCAGCGACCTTTGCCCCTGGTTGCCAAGGGCTTTGCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| 3UTR CAA 72 bp | ACAGATCTTTATTCCCTGCTTCATGTTGCAAAGCCCTaGGCAACCAGGGGCAAAGGTCGCTGGGGTTTGACC | + |
|
Preference number: 4 (lower is better) Translates to: TDLYSLLHVAKP*ATRGKGRWGLT Trigger: GGTCAAACCCCAGCGACCTTTGCCCCTGGTTGCCAAGGGCTTTGCAACATGAAGCAGGGAATAAAGATCTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| CDS-3UTR GCA 90 bp | CACTGGAGCTCCAGCAAAGCCAAATTGCATCTCCTCTGGTCAGACTCTCTTTCCTCTGGAATCTGGGGTTaGTGCTGTTCCAGTAGACGG | + |
|
Preference number: 4 (lower is better) Translates to: HWSSSKAKLHLLWSDSLSSGIWG*CCSSRR Trigger: CCGTCTACTGGAACAGCAGCAACCCCAGATTCCAGA...GGAAAGAGAGTCTGACCAGAGGAGATGCAATTTGGCTTTGCTGGAGCTCCAGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| CDS-3UTR CCA 90 bp | GTTGCACCACATCCTAAGCCCACAGAGGATTGTAACACCACCACAAAAAGCCACAACCCTTTGGACGTGTaGTCGCAGGCACTGTACCCA | + |
|
Preference number: 4 (lower is better) Translates to: VAPHPKPTEDCNTTTKSHNPLDV*SQALYP Trigger: TGGGTACAGTGCCTGCGACCACACGTCCAAAGGGTT...GTGGCTTTTTGTGGTGGTGTTACAATCCTCTGTGGGCTTAGGATGTGGTGCAAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| CDS-3UTR CCA 90 bp | TTTGTCAAAGTCTTTGGGACTCCATCTTGTTTATCTCCCACAGATAAACACGCGGCGGCTGGGTATCCTTaGTGTCTGCGCCGCGTTCTC | + |
|
Preference number: 4 (lower is better) Translates to: FVKVFGTPSCLSPTDKHAAAGYP*CLRRVL Trigger: GAGAACGCGGCGCAGACACCAAGGATACCCAGCCGC...CGCGTGTTTATCTGTGGGAGATAAACAAGATGGAGTCCCAAAGACTTTGACAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| 3UTR CAA 72 bp | AAGGCCACAGCACACTGGAGCTCCAGCAAAGCCAAATaGCATCTCCTCTGGTCAGACTCTCTTTCCTTGTAC | + |
|
Preference number: 4 (lower is better) Translates to: KATAHWSSSKAK*HLLWSDSLSLY Trigger: GTACAAGGAAAGAGAGTCTGACCAGAGGAGATGCAATTTGGCTTTGCTGGAGCTCCAGTGTGCTGTGGCCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| CDS-3UTR TCA 90 bp | CCCTACGCTTTAGGCTGTGTCAGAAAGGGAAAGGATAGAACATCAACACTTGAAGGTCCGTTTGGGGAGTaGGGCCGGTTACATTCCCAT | + |
|
Preference number: 4 (lower is better) Translates to: PYALGCVRKGKDRTSTLEGPFGE*GRLHSH Trigger: ATGGGAATGTAACCGGCCTCACTCCCCAAACGGACC...TTCAAGTGTTGATGTTCTATCCTTTCCCTTTCTGACACAGCCTAAAGCGTAGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| CDS-3UTR CCA 90 bp | CACTGGAGCTCCAGCAAAGCCAAATTGCATCTCCTCTGGTCAGACTCTCTTTCCCTCAGTCTTGTCTTCTaGGACAGAGTCCTCATAGTG | + |
|
Preference number: 4 (lower is better) Translates to: HWSSSKAKLHLLWSDSLSLSLVF*DRVLIV Trigger: CACTATGAGGACTCTGTCCCAGAAGACAAGACTGAG...GGAAAGAGAGTCTGACCAGAGGAGATGCAATTTGGCTTTGCTGGAGCTCCAGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| 3UTR CAA 72 bp | CCACTAAACAGACAGATCTTTATTCCCTGCTTCATGTaGCAAAGCCCTTGGCAACCAGGGGCAAAGGTCGCT | + |
|
Preference number: 4 (lower is better) Translates to: PLNRQIFIPCFM*QSPWQPGAKVA Trigger: AGCGACCTTTGCCCCTGGTTGCCAAGGGCTTTGCAACATGAAGCAGGGAATAAAGATCTGTCTGTTTAGTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| CDS-3UTR TCA 90 bp | CACTGGAGCTCCAGCAAAGCCAAATTGCATCTCCTCTGGTCAGACTCTCTTTCCACTCTCGGCCTGGCCTaGATTCAAATCCTAAAGAAA | + |
|
Preference number: 4 (lower is better) Translates to: HWSSSKAKLHLLWSDSLSTLGLA*IQILKK Trigger: TTTCTTTAGGATTTGAATTCAGGCCAGGCCGAGAGT...GGAAAGAGAGTCTGACCAGAGGAGATGCAATTTGGCTTTGCTGGAGCTCCAGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| CDS-3UTR CCA 90 bp | CCCTACGCTTTAGGCTGTGTCAGAAAGGGAAAGGATAGAACATCAACACTTGAACACCCCTCTGGAATCTaGGGTTGCTGCTGTTCCAGT | + |
|
Preference number: 4 (lower is better) Translates to: PYALGCVRKGKDRTSTLEHPSGI*GCCCSS Trigger: ACTGGAACAGCAGCAACCCCAGATTCCAGAGGGGTG...TTCAAGTGTTGATGTTCTATCCTTTCCCTTTCTGACACAGCCTAAAGCGTAGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| CDS-3UTR CCA 90 bp | CCCTACGCTTTAGGCTGTGTCAGAAAGGGAAAGGATAGAACATCAACACTTGAATTGCCAAAAGGCGGCTaGGTATCCTTGGTGTCTGCG | + |
|
Preference number: 4 (lower is better) Translates to: PYALGCVRKGKDRTSTLELPKGG*VSLVSA Trigger: CGCAGACACCAAGGATACCCAGCCGCCTTTTGGCAA...TTCAAGTGTTGATGTTCTATCCTTTCCCTTTCTGACACAGCCTAAAGCGTAGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| 3UTR CAA 72 bp | CACTCTGACAATCTGGCATTTTTATCTGGACTCCGTTaGATTGGGAAGGGGATGAGAGGAGTCAAGGGCAAG | + |
|
Preference number: 4 (lower is better) Translates to: HSDNLAFLSGLR*IGKGMRGVKGK Trigger: CTTGCCCTTGACTCCTCTCATCCCCTTCCCAATCAAACGGAGTCCAGATAAAAATGCCAGATTGTCAGAGTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| CDS-3UTR TCA 90 bp | GATGAGCAGTTAGGTGGATCTCTGGTGTTCCAAGACCCTGACATTTTCTGTGACTACATTCCCATCTCTTaGACCCTTTGGACGTGTGGT | + |
|
Preference number: 4 (lower is better) Translates to: DEQLGGSLVFQDPDIFCDYIPIS*TLWTCG Trigger: ACCACACGTCCAAAGGGTTCAAGAGATGGGAATGTA...GTCACAGAAAATGTCAGGGTCTTGGAACACCAGAGATCCACCTAACTGCTCATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| CDS-3UTR TCA 90 bp | CAGATGTTGGGAGAAGAGGGGAGAGGACTAACTATATCTTTGAGGCTGGCGACTGTCTCACAAAGACTTTaGGCTTTAGACAGGACCTTC | + |
|
Preference number: 4 (lower is better) Translates to: QMLGEEGRGLTISLRLATVSQRL*ALDRTF Trigger: GAAGGTCCTGTCTAAAGCTCAAAGTCTTTGTGAGAC...AGTCGCCAGCCTCAAAGATATAGTTAGTCCTCTCCCCTCTTCTCCCAACATCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| 3UTR CAA 72 bp | CCAAAGCTATTCCACTCTCTACTCATCAACCCTGGCTaGGCAGCCTTGGGGAAGGTCACTTTATTCATAAAA | + |
|
Preference number: 4 (lower is better) Translates to: PKLFHSLLINPG*AALGKVTLFIK Trigger: TTTTATGAATAAAGTGACCTTCCCCAAGGCTGCCAAGCCAGGGTTGATGAGTAGAGAGTGGAATAGCTTTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| CDS-3UTR CCA 90 bp | AAATTGCATCTCCTCTGGTCAGACTCTCTTTCCTTGTACATATTGTCCCCAGAGCATACAGCTATTTGTTaGTCTCACAAAGACTTTGAG | + |
|
Preference number: 4 (lower is better) Translates to: KLHLLWSDSLSLYILSPEHTAIC*SHKDFE Trigger: CTCAAAGTCTTTGTGAGACCAACAAATAGCTGTATG...CTCTGGGGACAATATGTACAAGGAAAGAGAGTCTGACCAGAGGAGATGCAATTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| CDS-3UTR TCA 90 bp | TTAGCTAAGATTATGTCACAGGTAAAAAGCATATTGTCTACTGGCGTGGATAGTCATCCAGGTAGTCATTaGTACAGACATCAATGTGGT | + |
|
Preference number: 4 (lower is better) Translates to: LAKIMSQVKSILSTGVDSHPGSH*YRHQCG Trigger: ACCACATTGATGTCTGTATCAATGACTACCTGGATG...ACTATCCACGCCAGTAGACAATATGCTTTTTACCTGTGACATAATCTTAGCTAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| 3UTR CAA 72 bp | TTACTGACTTGCTTGTTTACAAAGGCATGGTTTCTATaGATGTCGTGCAATAGCAAAAATAGGCTAGATCAC | + |
|
Preference number: 4 (lower is better) Translates to: LLTCLFTKAWFL*MSCNSKNRLDH Trigger: GTGATCTAGCCTATTTTTGCTATTGCACGACATCAATAGAAACCATGCCTTTGTAAACAAGCAAGTCAGTAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| CDS TCA 90 bp | AGACGGCGTAGCGGTCGGCGACGACTTTGGAGCCCGGGTCCTGGCTaGACACACACATCCAGAGCACCAGAAAGAGCAGCGTCAACATCT | + |
|
Preference number: 5 (lower is better) Translates to: RRRSGRRRLWSPGPG*THTSRAPERAASTS Trigger: AGATGTTGACGCTGCTCTTTCTGGTGCTCTGGATGTGTGTGTTCAGCCAGGACCCGGGCTCCAAAGTCGTCGCCGACCGCTACGCCGTCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076840.12 ENSMUST00000078839.5 |
||
| CDS GCA 90 bp | AGGAACAGTAGGATTGCCAAAAGGCGGCTGGGTATCCTTGGTGTCTaGGCCGCGTTCTCACCGCGGGATGGCTCGGCTGACTCATGTACG | + |
|
Preference number: 5 (lower is better) Translates to: RNSRIAKRRLGILGV*AAFSPRDGSADSCT Trigger: CGTACATGAGTCAGCCGAGCCATCCCGCGGTGAGAACGCGGCGCAGACACCAAGGATACCCAGCCGCCTTTTGGCAATCCTACTGTTCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076840.12 ENSMUST00000078839.5 |
||
| CDS CCA 90 bp | TCAAAAGCATCGCCAGGAGGAACAGTAGGATTGCCAAAAGGCGGCTaGGTATCCTTGGTGTCTGCGCCGCGTTCTCACCGCGGGATGGCT | + |
|
Preference number: 5 (lower is better) Translates to: SKASPGGTVGLPKGG*VSLVSAPRSHRGMA Trigger: AGCCATCCCGCGGTGAGAACGCGGCGCAGACACCAAGGATACCCAGCCGCCTTTTGGCAATCCTACTGTTCCTCCTGGCGATGCTTTTGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076840.12 ENSMUST00000078839.5 |
||
| CDS-3UTR CAA 90 bp | TGCAAAGCCCTTGGCAACCAGGGGCAAAGGTCGCTGGGGTTTGACCAACTGGGGCATCTCTTGAACCCTTaGGACGTGTGGTCGCAGGCA | + |
|
Preference number: 5 (lower is better) Translates to: CKALGNQGQRSLGFDQLGHLLNP*DVWSQA Trigger: TGCCTGCGACCACACGTCCAAAGGGTTCAAGAGATG...CCCCAGTTGGTCAAACCCCAGCGACCTTTGCCCCTGGTTGCCAAGGGCTTTGCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| CDS-3UTR CAA 90 bp | TGCAAAGCCCTTGGCAACCAGGGGCAAAGGTCGCTGGGGTTTGACCAACTGGGGCAGGACCTTCTTCCGTaGTCTGGGATTGCAGAGGAG | + |
|
Preference number: 5 (lower is better) Translates to: CKALGNQGQRSLGFDQLGQDLLP*SGIAEE Trigger: CTCCTCTGCAATCCCAGACAACGGAAGAAGGTCCTG...CCCCAGTTGGTCAAACCCCAGCGACCTTTGCCCCTGGTTGCCAAGGGCTTTGCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| CDS-3UTR CAA 90 bp | AGACTCTCTTTCCTTGTACATATTGTCCCCAGAGGAGTAGCCAAAGCTATTCCACGGTCGGCGACGACTTaGGAGCCCGGGTCCTGGCTG | + |
|
Preference number: 5 (lower is better) Translates to: RLSFLVHIVPRGVAKAIPRSATT*EPGSWL Trigger: CAGCCAGGACCCGGGCTCCAAAGTCGTCGCCGACCG...TGGAATAGCTTTGGCTACTCCTCTGGGGACAATATGTACAAGGAAAGAGAGTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| CDS-3UTR CAA 90 bp | GTCACGGAGCAAGGAGCAGAACGTGGGTATCGGGGTGGGAATTGGGGAAAGGCCTTACATTCCCATCTCTaGAACCCTTTGGACGTGTGG | + |
|
Preference number: 5 (lower is better) Translates to: VTEQGAERGYRGGNWGKALHSHL*NPLDVW Trigger: CCACACGTCCAAAGGGTTCAAGAGATGGGAATGTAA...GGCCTTTCCCCAATTCCCACCCCGATACCCACGTTCTGCTCCTTGCTCCGTGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| CDS-3UTR CAA 90 bp | TATTGTCCCCAGAGGAGTAGCCAAAGCTATTCCACTCTCTACTCATCAACCCTGGGCGGCTGGGTATCCTaGGTGTCTGCGCCGCGTTCT | + |
|
Preference number: 5 (lower is better) Translates to: YCPQRSSQSYSTLYSSTLGGWVS*VSAPRS Trigger: AGAACGCGGCGCAGACACCAAGGATACCCAGCCGCC...CAGGGTTGATGAGTAGAGAGTGGAATAGCTTTGGCTACTCCTCTGGGGACAATA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| CDS TCA 90 bp | TCAGCGGTCCGTTTGGGGAGTGAGGCCGGTTACATTCCCATCTCTTaGACCCTTTGGACGTGTGGTCGCAGGCACTGTACCCATCAAAAT | + |
|
Preference number: 5 (lower is better) Translates to: SAVRLGSEAGYIPIS*TLWTCGRRHCTHQN Trigger: ATTTTGATGGGTACAGTGCCTGCGACCACACGTCCAAAGGGTTCAAGAGATGGGAATGTAACCGGCCTCACTCCCCAAACGGACCGCTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076840.12 ENSMUST00000078839.5 |
||
| CDS-3UTR CAA 90 bp | TATTGTCCCCAGAGGAGTAGCCAAAGCTATTCCACTCTCTACTCATCAACCCTGACTTCAGCGGTCCGTTaGGGGAGTGAGGCCGGTTAC | + |
|
Preference number: 5 (lower is better) Translates to: YCPQRSSQSYSTLYSSTLTSAVR*GSEAGY Trigger: GTAACCGGCCTCACTCCCCAAACGGACCGCTGAAGT...CAGGGTTGATGAGTAGAGAGTGGAATAGCTTTGGCTACTCCTCTGGGGACAATA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
||
| CDS CCA 90 bp | ATCAAAATTCACCATGTACAGGACGTAGCGCTCAGTCTTGTCTTCTaGGACAGAGTCCTCATAGTGAGGGCAGAAAACATCCAGGTAGTC | + |
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Preference number: 5 (lower is better) Translates to: IKIHHVQDVALSLVF*DRVLIVRAENIQVV Trigger: GACTACCTGGATGTTTTCTGCCCTCACTATGAGGACTCTGTCCCAGAAGACAAGACTGAGCGCTACGTCCTGTACATGGTGAATTTTGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076840.12 ENSMUST00000078839.5 |
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| CDS-3UTR CAA 90 bp | ATTTCTACAATGACATTAGAACCACTAATGTCGTTAGGACTAACTGGAATCACCGGAGGAACAGTAGGATaGCCAAAAGGCGGCTGGGTA | + |
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Preference number: 5 (lower is better) Translates to: ISTMTLEPLMSLGLTGITGGTVG*PKGGWV Trigger: TACCCAGCCGCCTTTTGGCAATCCTACTGTTCCTCC...GGTGATTCCAGTTAGTCCTAACGACATTAGTGGTTCTAATGTCATTGTAGAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| CDS-3UTR CAA 90 bp | TTAGCTAAGATTATGTCACAGGTAAAAAGCATATTGTCTACTGGCGTGGATAGTGGTCTCACAAAGACTTaGAGCTTTAGACAGGACCTT | + |
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Preference number: 5 (lower is better) Translates to: LAKIMSQVKSILSTGVDSGLTKT*SFRQDL Trigger: AAGGTCCTGTCTAAAGCTCAAAGTCTTTGTGAGACC...ACTATCCACGCCAGTAGACAATATGCTTTTTACCTGTGACATAATCTTAGCTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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| CDS GCA 72 bp | AGGATTGCCAAAAGGCGGCTGGGTATCCTTGGTGTCTaGGCCGCGTTCTCACCGCGGGATGGCTCGGCTGAC | + |
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Preference number: 6 (lower is better) Translates to: RIAKRRLGILGV*AAFSPRDGSAD Trigger: GTCAGCCGAGCCATCCCGCGGTGAGAACGCGGCGCAGACACCAAGGATACCCAGCCGCCTTTTGGCAATCCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076840.12 ENSMUST00000078839.5 |
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| CDS CAA 90 bp | TCGCCAGGAGGAACAGTAGGATTGCCAAAAGGCGGCTGGGTATCCTaGGTGTCTGCGCCGCGTTCTCACCGCGGGATGGCTCGGCTGACT | + |
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Preference number: 6 (lower is better) Translates to: SPGGTVGLPKGGWVS*VSAPRSHRGMARLT Trigger: AGTCAGCCGAGCCATCCCGCGGTGAGAACGCGGCGCAGACACCAAGGATACCCAGCCGCCTTTTGGCAATCCTACTGTTCCTCCTGGCGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076840.12 ENSMUST00000078839.5 |
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| CDS TCA 72 bp | AGCGGTCGGCGACGACTTTGGAGCCCGGGTCCTGGCTaGACACACACATCCAGAGCACCAGAAAGAGCAGCG | + |
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Preference number: 6 (lower is better) Translates to: SGRRRLWSPGPG*THTSRAPERAA Trigger: CGCTGCTCTTTCTGGTGCTCTGGATGTGTGTGTTCAGCCAGGACCCGGGCTCCAAAGTCGTCGCCGACCGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076840.12 ENSMUST00000078839.5 |
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| CDS CCA 72 bp | TCGCCAGGAGGAACAGTAGGATTGCCAAAAGGCGGCTaGGTATCCTTGGTGTCTGCGCCGCGTTCTCACCGC | + |
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Preference number: 6 (lower is better) Translates to: SPGGTVGLPKGG*VSLVSAPRSHR Trigger: GCGGTGAGAACGCGGCGCAGACACCAAGGATACCCAGCCGCCTTTTGGCAATCCTACTGTTCCTCCTGGCGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076840.12 ENSMUST00000078839.5 |
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| CDS CAA 72 bp | GGAACAGTAGGATTGCCAAAAGGCGGCTGGGTATCCTaGGTGTCTGCGCCGCGTTCTCACCGCGGGATGGCT | + |
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Preference number: 6 (lower is better) Translates to: GTVGLPKGGWVS*VSAPRSHRGMA Trigger: AGCCATCCCGCGGTGAGAACGCGGCGCAGACACCAAGGATACCCAGCCGCCTTTTGGCAATCCTACTGTTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076840.12 ENSMUST00000078839.5 |
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| CDS TCA 72 bp | CGTTTGGGGAGTGAGGCCGGTTACATTCCCATCTCTTaGACCCTTTGGACGTGTGGTCGCAGGCACTGTACC | + |
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Preference number: 6 (lower is better) Translates to: RLGSEAGYIPIS*TLWTCGRRHCT Trigger: GGTACAGTGCCTGCGACCACACGTCCAAAGGGTTCAAGAGATGGGAATGTAACCGGCCTCACTCCCCAAACG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076840.12 ENSMUST00000078839.5 |
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| CDS TCA 72 bp | TGTCTGCGCCGCGTTCTCACCGCGGGATGGCTCGGCTaGCTCATGTACGGTGTCATTTGTTGGTCTCACAAA | + |
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Preference number: 6 (lower is better) Translates to: CLRRVLTAGWLG*LMYGVICWSHK Trigger: TTTGTGAGACCAACAAATGACACCGTACATGAGTCAGCCGAGCCATCCCGCGGTGAGAACGCGGCGCAGACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078839.5 |
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| CDS CCA 72 bp | CACCATGTACAGGACGTAGCGCTCAGTCTTGTCTTCTaGGACAGAGTCCTCATAGTGAGGGCAGAAAACATC | + |
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Preference number: 6 (lower is better) Translates to: HHVQDVALSLVF*DRVLIVRAENI Trigger: GATGTTTTCTGCCCTCACTATGAGGACTCTGTCCCAGAAGACAAGACTGAGCGCTACGTCCTGTACATGGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076840.12 ENSMUST00000078839.5 |
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| CDS CAA 72 bp | ATAATGTCAAAAGCATCGCCAGGAGGAACAGTAGGATaGCCAAAAGGCGGCTGGGTATCCTTGGTGTCTGCG | + |
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Preference number: 6 (lower is better) Translates to: IMSKASPGGTVG*PKGGWVSLVSA Trigger: CGCAGACACCAAGGATACCCAGCCGCCTTTTGGCAATCCTACTGTTCCTCCTGGCGATGCTTTTGACATTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076840.12 ENSMUST00000078839.5 |
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| CDS CCA 72 bp | CGGTTACATTCCCATCTCTTGAACCCTTTGGACGTGTaGTCGCAGGCACTGTACCCATCAAAATTCACCATG | + |
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Preference number: 6 (lower is better) Translates to: RLHSHLLNPLDV*SQALYPSKFTM Trigger: CATGGTGAATTTTGATGGGTACAGTGCCTGCGACCACACGTCCAAAGGGTTCAAGAGATGGGAATGTAACCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076840.12 ENSMUST00000078839.5 |
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| CDS TCA 72 bp | CATGTACGGTGTCATTTGTTGGTCTCACAAAGACTTTaGGCTTTAGACAGGACCTTCTTCCGTTGTCTGGGA | + |
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Preference number: 6 (lower is better) Translates to: HVRCHLLVSQRL*ALDRTFFRCLG Trigger: TCCCAGACAACGGAAGAAGGTCCTGTCTAAAGCTCAAAGTCTTTGTGAGACCAACAAATGACACCGTACATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078839.5 |
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| CDS CAA 72 bp | TCATGTACGGTGTCATTTGTTGGTCTCACAAAGACTTaGAGCTTTAGACAGGACCTTCTTCCGTTGTCTGGG | + |
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Preference number: 6 (lower is better) Translates to: SCTVSFVGLTKT*SFRQDLLPLSG Trigger: CCCAGACAACGGAAGAAGGTCCTGTCTAAAGCTCAAAGTCTTTGTGAGACCAACAAATGACACCGTACATGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078839.5 |
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| CDS TCA 72 bp | TTTTCATACAGCTATTTGTTGGTCTCACAAAGACTTTaGGCTTTAGACAGGACCTTCTTCCGTTGTCTGGGA | + |
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Preference number: 6 (lower is better) Translates to: FSYSYLLVSQRL*ALDRTFFRCLG Trigger: TCCCAGACAACGGAAGAAGGTCCTGTCTAAAGCTCAAAGTCTTTGTGAGACCAACAAATAGCTGTATGAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076840.12 |
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