Pregenerated sensors for EFNA3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028039Ensembl transcript IDs: ENSMUST00000029673.10, ENSMUST00000200436.2
Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGGCAGGCCCAGAGAGATGTACAGTGCAGACCCCGCTCCCAACCATaGGAAGAAGGATGTAGGCCCCACAGCAAGCTCCCTGCTCCTTCT | + |
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Preference number: 1 (lower is better) Translates to: GQAQRDVQCRPRSQP*EEGCRPHSKLPAPS Trigger: AGAAGGAGCAGGGAGCTTGCTGTGGGGCCTACATCCTTCTTCCCATGGTTGGGAGCGGGGTCTGCACTGTACATCTCTCTGGGCCTGCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR CCA 90 bp | AGCCCCCAGGTTTGGTACCAAACATTACCAAAGCCACAGGCCACCTaGGACCTGTGGCTGTCCCTGTGCCTGATCCACTACGGTGCCTGT | + |
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Preference number: 1 (lower is better) Translates to: SPQVWYQTLPKPQAT*DLWLSLCLIHYGAC Trigger: ACAGGCACCGTAGTGGATCAGGCACAGGGACAGCCACAGGTCCCAGGTGGCCTGTGGCTTTGGTAATGTTTGGTACCAAACCTGGGGGCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR CCA 90 bp | CAGGGGCCAGGGAGTCCTGAGCACTGCCTTTATAGCCCCCAGGTTTaGTACCAAACATTACCAAAGCCACAGGCCACCTGGGACCTGTGG | + |
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Preference number: 1 (lower is better) Translates to: QGPGSPEHCLYSPQV*YQTLPKPQATWDLW Trigger: CCACAGGTCCCAGGTGGCCTGTGGCTTTGGTAATGTTTGGTACCAAACCTGGGGGCTATAAAGGCAGTGCTCAGGACTCCCTGGCCCCTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR GCA 90 bp | TTGAAGCTCTGTCCCTCTCTCCACTCTGTGGCCTCTAACCTAGAATaGCTGCTCACCCGGGCCTTGAGCCCCACAGGATTGGTTCAGCCA | + |
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Preference number: 1 (lower is better) Translates to: LKLCPSLHSVASNLE*LLTRALSPTGLVQP Trigger: TGGCTGAACCAATCCTGTGGGGCTCAAGGCCCGGGTGAGCAGGCATTCTAGGTTAGAGGCCACAGAGTGGAGAGAGGGACAGAGCTTCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR CCA 90 bp | GTTTGGTACCAAACATTACCAAAGCCACAGGCCACCTGGGACCTGTaGCTGTCCCTGTGCCTGATCCACTACGGTGCCTGTCCTAGAGAG | + |
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Preference number: 1 (lower is better) Translates to: VWYQTLPKPQATWDL*LSLCLIHYGACPRE Trigger: CTCTCTAGGACAGGCACCGTAGTGGATCAGGCACAGGGACAGCCACAGGTCCCAGGTGGCCTGTGGCTTTGGTAATGTTTGGTACCAAAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR GCA 90 bp | ATCTGGGATTTCTGTTGGCTACAAAGTCACACGTACTCTTTATGCTaGTGTGGCCTGTTGCCCAAGTACAGAAAGGGAATGTTAAACTTG | + |
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Preference number: 1 (lower is better) Translates to: IWDFCWLQSHTYSLC*CGLLPKYRKGMLNL Trigger: CAAGTTTAACATTCCCTTTCTGTACTTGGGCAACAGGCCACAGCAGCATAAAGAGTACGTGTGACTTTGTAGCCAACAGAAATCCCAGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR GCA 90 bp | AACATCTGGGATTTCTGTTGGCTACAAAGTCACACGTACTCTTTATaGTGCTGTGGCCTGTTGCCCAAGTACAGAAAGGGAATGTTAAAC | + |
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Preference number: 1 (lower is better) Translates to: NIWDFCWLQSHTYSL*CCGLLPKYRKGMLN Trigger: GTTTAACATTCCCTTTCTGTACTTGGGCAACAGGCCACAGCAGCATAAAGAGTACGTGTGACTTTGTAGCCAACAGAAATCCCAGATGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR CCA 90 bp | GGATTTCTGTTGGCTACAAAGTCACACGTACTCTTTATGCTGCTGTaGCCTGTTGCCCAAGTACAGAAAGGGAATGTTAAACTTGTCACA | + |
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Preference number: 1 (lower is better) Translates to: GFLLATKSHVLFMLL*PVAQVQKGNVKLVT Trigger: TGTGACAAGTTTAACATTCCCTTTCTGTACTTGGGCAACAGGCCACAGCAGCATAAAGAGTACGTGTGACTTTGTAGCCAACAGAAATCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR-3UTR GCA 90 bp | CACTCTGTGGCCTCTAACCTAGAATGCCTGCTCACCCGGGCCTTGAGCCCCACACCACAGCAAGCTCCCTaGTCCTTCTCAGCCCTTCCC | + |
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Preference number: 2 (lower is better) Translates to: HSVASNLECLLTRALSPTPQQAP*SFSALP Trigger: GGGAAGGGCTGAGAAGGAGCAGGGAGCTTGCTGTGG...TGTGGGGCTCAAGGCCCGGGTGAGCAGGCATTCTAGGTTAGAGGCCACAGAGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR-3UTR CCA 90 bp | CTTGAGCCCCACAGGATTGGTTCAGCCAGTGAAACAGAGGGACGTGGCCCCTTGGCCACCTGGGACCTGTaGCTGTCCCTGTGCCTGATC | + |
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Preference number: 2 (lower is better) Translates to: LEPHRIGSASETEGRGPLATWDL*LSLCLI Trigger: GATCAGGCACAGGGACAGCCACAGGTCCCAGGTGGC...CAAGGGGCCACGTCCCTCTGTTTCACTGGCTGAACCAATCCTGTGGGGCTCAAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR-3UTR CCA 90 bp | TTCTGCCCCAGAGGAGAGGACAGGGGGCACCTCCCATGCTTCGTTTGTTCTCTCCCCCGCTCCCAACCATaGGAAGAAGGATGTAGGCCC | + |
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Preference number: 2 (lower is better) Translates to: FCPRGEDRGHLPCFVCSLPRSQP*EEGCRP Trigger: GGGCCTACATCCTTCTTCCCATGGTTGGGAGCGGGG...GAGAGAACAAACGAAGCATGGGAGGTGCCCCCTGTCCTCTCCTCTGGGGCAGAA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR CAA 90 bp | CTCCACTCTGTGGCCTCTAACCTAGAATGCCTGCTCACCCGGGCCTaGAGCCCCACAGGATTGGTTCAGCCAGTGAAACAGAGGGACGTG | + |
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Preference number: 2 (lower is better) Translates to: LHSVASNLECLLTRA*SPTGLVQPVKQRDV Trigger: CACGTCCCTCTGTTTCACTGGCTGAACCAATCCTGTGGGGCTCAAGGCCCGGGTGAGCAGGCATTCTAGGTTAGAGGCCACAGAGTGGAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR-3UTR CCA 90 bp | GTGGGAAGCCGGAGCCTAGAAAGGTTAAGGAACCTGCCCAAAGTCACCCGGGCTTCCTCTATGTGGGAGTaGAGGGAGAGGACATGCTTA | + |
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Preference number: 2 (lower is better) Translates to: VGSRSLERLRNLPKVTRASSMWE*RERTCL Trigger: TAAGCATGTCCTCTCCCTCCACTCCCACATAGAGGA...AGCCCGGGTGACTTTGGGCAGGTTCCTTAACCTTTCTAGGCTCCGGCTTCCCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR-3UTR CCA 90 bp | TCCAAAAGTGTCTGTGCGTTGCATAGGTCCTGTCTTCACAGAAGACAAAAGAGGCTGTACATGCCTGTCTaGCACCCCGATGCCCACCCC | + |
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Preference number: 2 (lower is better) Translates to: SKSVCALHRSCLHRRQKRLYMPV*HPDAHP Trigger: GGGGTGGGCATCGGGGTGCCAGACAGGCATGTACAG...CCTCTTTTGTCTTCTGTGAAGACAGGACCTATGCAACGCACAGACACTTTTGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR-3UTR GCA 90 bp | GGTTCAGCCAGTGAAACAGAGGGACGTGGCCCCTTGAAACCACACACACTCAGGAAAGTGTCTGTGCGTTaGATAGGTCCTGTCTTCACA | + |
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Preference number: 2 (lower is better) Translates to: GSASETEGRGPLKPHTLRKVSVR*IGPVFT Trigger: TGTGAAGACAGGACCTATGCAACGCACAGACACTTT...CCTGAGTGTGTGTGGTTTCAAGGGGCCACGTCCCTCTGTTTCACTGGCTGAACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR-3UTR CCA 90 bp | GGTCTGAAAACATCTGGGATTTCTGTTGGCTACAAAGTCACACGTACTCTTTATGGGGACCACTTAGGGTaGGCAGGGCAAGGTCCTGGG | + |
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Preference number: 2 (lower is better) Translates to: GLKTSGISVGYKVTRTLYGDHLG*AGQGPG Trigger: CCCAGGACCTTGCCCTGCCCACCCTAAGTGGTCCCC...ATAAAGAGTACGTGTGACTTTGTAGCCAACAGAAATCCCAGATGTTTTCAGACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR-3UTR CCA 90 bp | TACATTATATATAGAGATATAGAGTCTGTACATGCCTGTCTGGCACCCCGATGCGTCCTAGAGAGTGTGTaGGCAAAGAGGGCAGGCCCA | + |
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Preference number: 2 (lower is better) Translates to: YIIYRDIESVHACLAPRCVLESV*AKRAGP Trigger: TGGGCCTGCCCTCTTTGCCCACACACTCTCTAGGAC...GCATCGGGGTGCCAGACAGGCATGTACAGACTCTATATCTCTATATATAATGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR-3UTR CCA 90 bp | TACATTATATATAGAGATATAGAGTCTGTACATGCCTGTCTGGCACCCCGATGCGGCATATTTGCCTCTTaGGGGACAAAGAGGGAGGGC | + |
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Preference number: 2 (lower is better) Translates to: YIIYRDIESVHACLAPRCGIFAS*GTKREG Trigger: GCCCTCCCTCTTTGTCCCCCAAGAGGCAAATATGCC...GCATCGGGGTGCCAGACAGGCATGTACAGACTCTATATCTCTATATATAATGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR-3UTR CCA 90 bp | CAAAGTCACACGTACTCTTTATGCTGCTGTGGCCTGTTGCCCAAGTACAGAAAGTTCGTTTGTTCTCTCTaGGGCATATTTGCCTCTTGG | + |
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Preference number: 2 (lower is better) Translates to: QSHTYSLCCCGLLPKYRKFVCSL*GIFASW Trigger: CCAAGAGGCAAATATGCCCCAGAGAGAACAAACGAA...CTTTCTGTACTTGGGCAACAGGCCACAGCAGCATAAAGAGTACGTGTGACTTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR-3UTR GCA 90 bp | TCAAGGTTAAGAAGGGGAAGGGACTCTGTCTGTCTGTACATTATATATAGAGATAGGGGGCACCTCCCATaGTTCGTTTGTTCTCTCTGG | + |
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Preference number: 2 (lower is better) Translates to: SRLRRGRDSVCLYIIYRDRGHLP*FVCSLW Trigger: CCAGAGAGAACAAACGAAGCATGGGAGGTGCCCCCT...ATCTCTATATATAATGTACAGACAGACAGAGTCCCTTCCCCTTCTTAACCTTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR-3UTR CCA 90 bp | CAAAGTCACACGTACTCTTTATGCTGCTGTGGCCTGTTGCCCAAGTACAGAAAGTATAGCCCCCAGGTTTaGTACCAAACATTACCAAAG | + |
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Preference number: 2 (lower is better) Translates to: QSHTYSLCCCGLLPKYRKYSPQV*YQTLPK Trigger: CTTTGGTAATGTTTGGTACCAAACCTGGGGGCTATA...CTTTCTGTACTTGGGCAACAGGCCACAGCAGCATAAAGAGTACGTGTGACTTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR-3UTR CAA 90 bp | CACTCTGTGGCCTCTAACCTAGAATGCCTGCTCACCCGGGCCTTGAGCCCCACAGCAAGGTCCTGGGAGTaGGTTCCCGGCTCAGGGCTG | + |
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Preference number: 3 (lower is better) Translates to: HSVASNLECLLTRALSPTARSWE*VPGSGL Trigger: CAGCCCTGAGCCGGGAACCAACTCCCAGGACCTTGC...TGTGGGGCTCAAGGCCCGGGTGAGCAGGCATTCTAGGTTAGAGGCCACAGAGTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR TCA 72 bp | CACAGGCCACCTGGGACCTGTGGCTGTCCCTGTGCCTaGTCCACTACGGTGCCTGTCCTAGAGAGTGTGTGG | + |
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Preference number: 3 (lower is better) Translates to: HRPPGTCGCPCA*STTVPVLESVW Trigger: CCACACACTCTCTAGGACAGGCACCGTAGTGGATCAGGCACAGGGACAGCCACAGGTCCCAGGTGGCCTGTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR-3UTR CAA 90 bp | GGTTCAGCCAGTGAAACAGAGGGACGTGGCCCCTTGAAACCACACACACTCAGGGGGCATATTTGCCTCTaGGGGGACAAAGAGGGAGGG | + |
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Preference number: 3 (lower is better) Translates to: GSASETEGRGPLKPHTLRGHICL*GDKEGG Trigger: CCCTCCCTCTTTGTCCCCCAAGAGGCAAATATGCCC...CCTGAGTGTGTGTGGTTTCAAGGGGCCACGTCCCTCTGTTTCACTGGCTGAACC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR CCA 72 bp | CAGAGAGATGTACAGTGCAGACCCCGCTCCCAACCATaGGAAGAAGGATGTAGGCCCCACAGCAAGCTCCCT | + |
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Preference number: 3 (lower is better) Translates to: QRDVQCRPRSQP*EEGCRPHSKLP Trigger: AGGGAGCTTGCTGTGGGGCCTACATCCTTCTTCCCATGGTTGGGAGCGGGGTCTGCACTGTACATCTCTCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR GCA 72 bp | CCTCCCATGCTTCGTTTGTTCTCTCTGGGGCATATTTaGCTCTTGGGGGACAAAGAGGGAGGGCACCAAGGG | + |
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Preference number: 3 (lower is better) Translates to: PPMLRLFSLGHI*LLGDKEGGHQG Trigger: CCCTTGGTGCCCTCCCTCTTTGTCCCCCAAGAGGCAAATATGCCCCAGAGAGAACAAACGAAGCATGGGAGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR TCA 72 bp | GTTAAGGAACCTGCCCAAAGTCACCCGGGCTCAACTTaGAGCTCTGTCCCTCTCTCCACTCTGTGGCCTCTA | + |
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Preference number: 3 (lower is better) Translates to: VKEPAQSHPGST*SSVPLSTLWPL Trigger: TAGAGGCCACAGAGTGGAGAGAGGGACAGAGCTTCAAGTTGAGCCCGGGTGACTTTGGGCAGGTTCCTTAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR CCA 72 bp | GTTTGGTACCAAACATTACCAAAGCCACAGGCCACCTaGGACCTGTGGCTGTCCCTGTGCCTGATCCACTAC | + |
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Preference number: 3 (lower is better) Translates to: VWYQTLPKPQAT*DLWLSLCLIHY Trigger: GTAGTGGATCAGGCACAGGGACAGCCACAGGTCCCAGGTGGCCTGTGGCTTTGGTAATGTTTGGTACCAAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR CCA 72 bp | GGGAGTCCTGAGCACTGCCTTTATAGCCCCCAGGTTTaGTACCAAACATTACCAAAGCCACAGGCCACCTGG | + |
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Preference number: 3 (lower is better) Translates to: GSPEHCLYSPQV*YQTLPKPQATW Trigger: CCAGGTGGCCTGTGGCTTTGGTAATGTTTGGTACCAAACCTGGGGGCTATAAAGGCAGTGCTCAGGACTCCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR CCA 72 bp | TGCTTCGTTTGTTCTCTCTGGGGCATATTTGCCTCTTaGGGGACAAAGAGGGAGGGCACCAAGGGTCAGGGA | + |
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Preference number: 3 (lower is better) Translates to: CFVCSLWGIFAS*GTKREGTKGQG Trigger: TCCCTGACCCTTGGTGCCCTCCCTCTTTGTCCCCCAAGAGGCAAATATGCCCCAGAGAGAACAAACGAAGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR-3UTR CAA 90 bp | GGTCTGAAAACATCTGGGATTTCTGTTGGCTACAAAGTCACACGTACTCTTTATCTGCTCACCCGGGCCTaGAGCCCCACAGGATTGGTT | + |
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Preference number: 3 (lower is better) Translates to: GLKTSGISVGYKVTRTLYLLTRA*SPTGLV Trigger: AACCAATCCTGTGGGGCTCAAGGCCCGGGTGAGCAG...ATAAAGAGTACGTGTGACTTTGTAGCCAACAGAAATCCCAGATGTTTTCAGACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR TCA 72 bp | TTGGTTCAGCCAGTGAAACAGAGGGACGTGGCCCCTTaGAACCACACACACTCAGGTATTTTTATCTCCAGT | + |
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Preference number: 3 (lower is better) Translates to: LVQPVKQRDVAP*NHTHSGIFISS Trigger: ACTGGAGATAAAAATACCTGAGTGTGTGTGGTTTCAAGGGGCCACGTCCCTCTGTTTCACTGGCTGAACCAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR GCA 72 bp | TTCTGTTGGCTACAAAGTCACACGTACTCTTTATGCTaGTGTGGCCTGTTGCCCAAGTACAGAAAGGGAATG | + |
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Preference number: 3 (lower is better) Translates to: FCWLQSHTYSLC*CGLLPKYRKGM Trigger: CATTCCCTTTCTGTACTTGGGCAACAGGCCACAGCAGCATAAAGAGTACGTGTGACTTTGTAGCCAACAGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR GCA 72 bp | GATTTCTGTTGGCTACAAAGTCACACGTACTCTTTATaGTGCTGTGGCCTGTTGCCCAAGTACAGAAAGGGA | + |
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Preference number: 3 (lower is better) Translates to: DFCWLQSHTYSL*CCGLLPKYRKG Trigger: TCCCTTTCTGTACTTGGGCAACAGGCCACAGCAGCATAAAGAGTACGTGTGACTTTGTAGCCAACAGAAATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR CCA 72 bp | TTGGCTACAAAGTCACACGTACTCTTTATGCTGCTGTaGCCTGTTGCCCAAGTACAGAAAGGGAATGTTAAA | + |
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Preference number: 3 (lower is better) Translates to: LATKSHVLFMLL*PVAQVQKGNVK Trigger: TTTAACATTCCCTTTCTGTACTTGGGCAACAGGCCACAGCAGCATAAAGAGTACGTGTGACTTTGTAGCCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| CDS-3UTR GCA 90 bp | CTTGAGCCCCACAGGATTGGTTCAGCCAGTGAAACAGAGGGACGTGGCCCCTTGATGTACAGCACGTACTaGTCCGCCCCGCCGCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: LEPHRIGSASETEGRGPLMYSTY*SAPPPG Trigger: GCCTGGCGGCGGGGCGGAGCAGTACGTGCTGTACAT...CAAGGGGCCACGTCCCTCTGTTTCACTGGCTGAACCAATCCTGTGGGGCTCAAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| CDS-3UTR GCA 90 bp | CCAGAGGAGAGGACAGGGGGCACCTCCCATGCTTCGTTTGTTCTCTCTGGGGCAAGCCTTGGCTGGCGTTaGAGGTGCGGTAGCCGCTCA | + |
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Preference number: 4 (lower is better) Translates to: PEERTGGTSHASFVLSGASLGWR*RCGSRS Trigger: TGAGCGGCTACCGCACCTGCAACGCCAGCCAAGGCT...TGCCCCAGAGAGAACAAACGAAGCATGGGAGGTGCCCCCTGTCCTCTCCTCTGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR CAA 72 bp | GAATGCCTGCTCACCCGGGCCTTGAGCCCCACAGGATaGGTTCAGCCAGTGAAACAGAGGGACGTGGCCCCT | + |
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Preference number: 4 (lower is better) Translates to: ECLLTRALSPTG*VQPVKQRDVAP Trigger: AGGGGCCACGTCCCTCTGTTTCACTGGCTGAACCAATCCTGTGGGGCTCAAGGCCCGGGTGAGCAGGCATTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| CDS-3UTR CCA 90 bp | CCAGAGGAGAGGACAGGGGGCACCTCCCATGCTTCGTTTGTTCTCTCTGGGGCATGCATTCCCAGCGCTTaGAGCCTTGGCTGGCGTTGC | + |
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Preference number: 4 (lower is better) Translates to: PEERTGGTSHASFVLSGACIPSA*SLGWRC Trigger: GCAACGCCAGCCAAGGCTCCAAGCGCTGGGAATGCA...TGCCCCAGAGAGAACAAACGAAGCATGGGAGGTGCCCCCTGTCCTCTCCTCTGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| CDS-3UTR TCA 90 bp | CACTCTGTGGCCTCTAACCTAGAATGCCTGCTCACCCGGGCCTTGAGCCCCACAACTTCTCGGAGAACTTaGTGGGGCTGTGCGAGGCGT | + |
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Preference number: 4 (lower is better) Translates to: HSVASNLECLLTRALSPTTSRRT*WGCARR Trigger: ACGCCTCGCACAGCCCCATCAAGTTCTCCGAGAAGT...TGTGGGGCTCAAGGCCCGGGTGAGCAGGCATTCTAGGTTAGAGGCCACAGAGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| CDS-3UTR GCA 90 bp | CTTGAGCCCCACAGGATTGGTTCAGCCAGTGAAACAGAGGGACGTGGCCCCTTGAACTTGATGGGGCTGTaGGAGGCGTGCTGCCGGTTG | + |
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Preference number: 4 (lower is better) Translates to: LEPHRIGSASETEGRGPLNLMGL*EACCRL Trigger: CAACCGGCAGCACGCCTCGCACAGCCCCATCAAGTT...CAAGGGGCCACGTCCCTCTGTTTCACTGGCTGAACCAATCCTGTGGGGCTCAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| CDS-3UTR CCA 90 bp | GGTTCAGCCAGTGAAACAGAGGGACGTGGCCCCTTGAAACCACACACACTCAGGGCTTGGAGCCTTGGCTaGCGTTGCAGGTGCGGTAGC | + |
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Preference number: 4 (lower is better) Translates to: GSASETEGRGPLKPHTLRAWSLG*RCRCGS Trigger: GCTACCGCACCTGCAACGCCAGCCAAGGCTCCAAGC...CCTGAGTGTGTGTGGTTTCAAGGGGCCACGTCCCTCTGTTTCACTGGCTGAACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| CDS-3UTR CCA 90 bp | CACTCTGTGGCCTCTAACCTAGAATGCCTGCTCACCCGGGCCTTGAGCCCCACAGCCGCAGGTGCTGATTaGAGCTGTTCCAGTATACCG | + |
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Preference number: 4 (lower is better) Translates to: HSVASNLECLLTRALSPTAAGAD*SCSSIP Trigger: CGGTATACTGGAACAGCTCCAATCAGCACCTGCGGC...TGTGGGGCTCAAGGCCCGGGTGAGCAGGCATTCTAGGTTAGAGGCCACAGAGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| CDS-3UTR TCA 90 bp | GGTTCAGCCAGTGAAACAGAGGGACGTGGCCCCTTGAAACCACACACACTCAGGAGGCCAAGAGCGTCATaGGGAAGAAGGCGATGCCCA | + |
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Preference number: 4 (lower is better) Translates to: GSASETEGRGPLKPHTLRRPRAS*GRRRCP Trigger: TGGGCATCGCCTTCTTCCTCATGACGCTCTTGGCCT...CCTGAGTGTGTGTGGTTTCAAGGGGCCACGTCCCTCTGTTTCACTGGCTGAACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| CDS-3UTR GCA 90 bp | ACTTTCCCTGTGGGAAGCCGGAGCCTAGAAAGGTTAAGGAACCTGCCCAAAGTCAGGCGTGCTGCCGGTTaGATTCCCAGCGCTTGGAGC | + |
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Preference number: 4 (lower is better) Translates to: TFPVGSRSLERLRNLPKVRRAAG*IPSAWS Trigger: GCTCCAAGCGCTGGGAATGCAACCGGCAGCACGCCT...GACTTTGGGCAGGTTCCTTAACCTTTCTAGGCTCCGGCTTCCCACAGGGAAAGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR CAA 72 bp | GTTGGTTCCCGGCTCAGGGCTGGAAGGGAGGGGGCATaGTTGTTACGGTCTCCAAAAGTGTCTGTGCGTTGC | + |
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Preference number: 4 (lower is better) Translates to: VGSRLRAGREGA*LLRSPKVSVRC Trigger: GCAACGCACAGACACTTTTGGAGACCGTAACAACAATGCCCCCTCCCTTCCAGCCCTGAGCCGGGAACCAAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| CDS-3UTR TCA 90 bp | CCAGAGGAGAGGACAGGGGGCACCTCCCATGCTTCGTTTGTTCTCTCTGGGGCAAGTCTTCCAACACGTTaGTCTTCACATTGGGGCCCA | + |
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Preference number: 4 (lower is better) Translates to: PEERTGGTSHASFVLSGASLPTR*SSHWGP Trigger: TGGGCCCCAATGTGAAGATCAACGTGTTGGAAGACT...TGCCCCAGAGAGAACAAACGAAGCATGGGAGGTGCCCCCTGTCCTCTCCTCTGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| CDS-3UTR GCA 90 bp | CACTGCCTTTATAGCCCCCAGGTTTGGTACCAAACATTACCAAAGCCACAGGCCGGCTGGCGTTGCAGGTaGGGTAGCCGCTCAGGTTCA | + |
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Preference number: 4 (lower is better) Translates to: HCLYSPQVWYQTLPKPQAGWRCR*GSRSGS Trigger: TGAACCTGAGCGGCTACCGCACCTGCAACGCCAGCC...GGCCTGTGGCTTTGGTAATGTTTGGTACCAAACCTGGGGGCTATAAAGGCAGTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| CDS-3UTR CCA 90 bp | TCACACGTACTCTTTATGCTGCTGTGGCCTGTTGCCCAAGTACAGAAAGGGAATGGGCCCATGGTGAACTaGGGGAGAGTGGGGACCGGC | + |
|
Preference number: 4 (lower is better) Translates to: SHVLFMLLWPVAQVQKGNGPMVN*GRVGTG Trigger: GCCGGTCCCCACTCTCCCCCAGTTCACCATGGGCCC...ATTCCCTTTCTGTACTTGGGCAACAGGCCACAGCAGCATAAAGAGTACGTGTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR CAA 72 bp | ATGCTTCGTTTGTTCTCTCTGGGGCATATTTGCCTCTaGGGGGACAAAGAGGGAGGGCACCAAGGGTCAGGG | + |
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Preference number: 4 (lower is better) Translates to: MLRLFSLGHICL*GDKEGGHQGSG Trigger: CCCTGACCCTTGGTGCCCTCCCTCTTTGTCCCCCAAGAGGCAAATATGCCCCAGAGAGAACAAACGAAGCAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| CDS-3UTR CCA 90 bp | GTTTGTTCTCTCTGGGGCATATTTGCCTCTTGGGGGACAAAGAGGGAGGGCACCTGCTCTTCTCAAGCTTaGGCACCTGGGGATTCTCTC | + |
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Preference number: 4 (lower is better) Translates to: VCSLWGIFASWGTKREGTCSSQA*APGDSL Trigger: GAGAGAATCCCCAGGTGCCCAAGCTTGAGAAGAGCA...GGTGCCCTCCCTCTTTGTCCCCCAAGAGGCAAATATGCCCCAGAGAGAACAAAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| CDS-3UTR GCA 90 bp | TCAAGGTTAAGAAGGGGAAGGGACTCTGTCTGTCTGTACATTATATATAGAGATATGCCGGTTTCCCAGTaGGCCCCCAGGCCCCTGGGC | + |
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Preference number: 4 (lower is better) Translates to: SRLRRGRDSVCLYIIYRDMPVSQ*APRPLG Trigger: GCCCAGGGGCCTGGGGGCGCACTGGGAAACCGGCAT...ATCTCTATATATAATGTACAGACAGACAGAGTCCCTTCCCCTTCTTAACCTTGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| CDS-3UTR GCA 90 bp | TCACACGTACTCTTTATGCTGCTGTGGCCTGTTGCCCAAGTACAGAAAGGGAATTTCCAGTATACCGCATaGCGGTTTCCCAGTGCGCCC | + |
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Preference number: 4 (lower is better) Translates to: SHVLFMLLWPVAQVQKGNFQYTA*RFPSAP Trigger: GGGCGCACTGGGAAACCGGCATGCGGTATACTGGAA...ATTCCCTTTCTGTACTTGGGCAACAGGCCACAGCAGCATAAAGAGTACGTGTGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| CDS-3UTR CCA 90 bp | TACATTATATATAGAGATATAGAGTCTGTACATGCCTGTCTGGCACCCCGATGCCCCCGGAGTGCGATGTaGAGGCGCAGCAGACGAACA | + |
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Preference number: 4 (lower is better) Translates to: YIIYRDIESVHACLAPRCPRSAM*RRSRRT Trigger: TGTTCGTCTGCTGCGCCTCCACATCGCACTCCGGGG...GCATCGGGGTGCCAGACAGGCATGTACAGACTCTATATCTCTATATATAATGTA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| CDS-3UTR CCA 90 bp | GATATTCTGAGATATAAAGCAGGTCTGAAAACATCTGGGATTTCTGTTGGCTACCAGCGCTTGGAGCCTTaGCTGGCGTTGCAGGTGCGG | + |
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Preference number: 4 (lower is better) Translates to: DILRYKAGLKTSGISVGYQRLEP*LALQVR Trigger: CCGCACCTGCAACGCCAGCCAAGGCTCCAAGCGCTG...GTAGCCAACAGAAATCCCAGATGTTTTCAGACCTGCTTTATATCTCAGAATATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| CDS-3UTR TCA 90 bp | TACATTATATATAGAGATATAGAGTCTGTACATGCCTGTCTGGCACCCCGATGCTGGGGCTGGTCCCACTaGTGCTCTTCTCAAGCTTGG | + |
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Preference number: 4 (lower is better) Translates to: YIIYRDIESVHACLAPRCWGWSH*CSSQAW Trigger: CCAAGCTTGAGAAGAGCATCAGTGGGACCAGCCCCA...GCATCGGGGTGCCAGACAGGCATGTACAGACTCTATATCTCTATATATAATGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR CAA 72 bp | ATTGGTTCAGCCAGTGAAACAGAGGGACGTGGCCCCTaGAAACCACACACACTCAGGTATTTTTATCTCCAG | + |
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Preference number: 4 (lower is better) Translates to: IGSASETEGRGP*KPHTLRYFYLQ Trigger: CTGGAGATAAAAATACCTGAGTGTGTGTGGTTTCAAGGGGCCACGTCCCTCTGTTTCACTGGCTGAACCAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| CDS-3UTR TCA 90 bp | AAAACATCTGGGATTTCTGTTGGCTACAAAGTCACACGTACTCTTTATGCTGCTTCTCGCCGCAGGTGCTaGTTGGAGCTGTTCCAGTAT | + |
|
Preference number: 4 (lower is better) Translates to: KTSGISVGYKVTRTLYAASRRRC*LELFQY Trigger: ATACTGGAACAGCTCCAATCAGCACCTGCGGCGAGA...AGCAGCATAAAGAGTACGTGTGACTTTGTAGCCAACAGAAATCCCAGATGTTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| CDS-3UTR CCA 90 bp | GGTCTGAAAACATCTGGGATTTCTGTTGGCTACAAAGTCACACGTACTCTTTATAGTGCAGGTTGTGAGTaGGCGTGGAGATGTAGTAGT | + |
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Preference number: 4 (lower is better) Translates to: GLKTSGISVGYKVTRTLYSAGCE*AWRCSS Trigger: ACTACTACATCTCCACGCCCACTCACAACCTGCACT...ATAAAGAGTACGTGTGACTTTGTAGCCAACAGAAATCCCAGATGTTTTCAGACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR CAA 72 bp | CAAAGTCACACGTACTCTTTATGCTGCTGTGGCCTGTaGCCCAAGTACAGAAAGGGAATGTTAAACTTGTCA | + |
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Preference number: 4 (lower is better) Translates to: QSHTYSLCCCGL*PKYRKGMLNLS Trigger: TGACAAGTTTAACATTCCCTTTCTGTACTTGGGCAACAGGCCACAGCAGCATAAAGAGTACGTGTGACTTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| 3UTR CAA 72 bp | GGCCTGTTGCCCAAGTACAGAAAGGGAATGTTAAACTaGTCACAGGTGAGTGAAAATAACCATGTAACTTTT | + |
|
Preference number: 4 (lower is better) Translates to: GLLPKYRKGMLN*SQVSENNHVTF Trigger: AAAAGTTACATGGTTATTTTCACTCACCTGTGACAAGTTTAACATTCCCTTTCTGTACTTGGGCAACAGGCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| CDS-3UTR CAA 90 bp | TTCTGCCCCAGAGGAGAGGACAGGGGGCACCTCCCATGCTTCGTTTGTTCTCTCCCAGCGCTTGGAGCCTaGGCTGGCGTTGCAGGTGCG | + |
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Preference number: 5 (lower is better) Translates to: FCPRGEDRGHLPCFVCSLPALGA*AGVAGA Trigger: CGCACCTGCAACGCCAGCCAAGGCTCCAAGCGCTGG...GAGAGAACAAACGAAGCATGGGAGGTGCCCCCTGTCCTCTCCTCTGGGGCAGAA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| CDS CCA 90 bp | CGCTTGGGGCTGGTCCCACTGATGCTCTTCTCAAGCTTGGGCACCTaGGGATTCTCTCCCTCAAAGTCTTTGGAGGCGCAGCAGACGAAC | + |
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Preference number: 5 (lower is better) Translates to: RLGLVPLMLFSSLGT*GFSPSKSLEAQQTN Trigger: GTTCGTCTGCTGCGCCTCCAAAGACTTTGAGGGAGAGAATCCCCAGGTGCCCAAGCTTGAGAAGAGCATCAGTGGGACCAGCCCCAAGCG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200436.2 |
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| CDS-3UTR CAA 90 bp | CACTGCCTTTATAGCCCCCAGGTTTGGTACCAAACATTACCAAAGCCACAGGCCGAGGCGTGCTGCCGGTaGCATTCCCAGCGCTTGGAG | + |
|
Preference number: 5 (lower is better) Translates to: HCLYSPQVWYQTLPKPQAEACCR*HSQRLE Trigger: CTCCAAGCGCTGGGAATGCAACCGGCAGCACGCCTC...GGCCTGTGGCTTTGGTAATGTTTGGTACCAAACCTGGGGGCTATAAAGGCAGTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| CDS-3UTR CAA 90 bp | GTGTGTGGGCAAAGAGGGCAGGCCCAGAGAGATGTACAGTGCAGACCCCGCTCCAAGTCTTCCAACACGTaGATCTTCACATTGGGGCCC | + |
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Preference number: 5 (lower is better) Translates to: VCGQRGQAQRDVQCRPRSKSSNT*IFTLGP Trigger: GGGCCCCAATGTGAAGATCAACGTGTTGGAAGACTT...GGAGCGGGGTCTGCACTGTACATCTCTCTGGGCCTGCCCTCTTTGCCCACACAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| CDS-3UTR CAA 90 bp | GGTTCAGCCAGTGAAACAGAGGGACGTGGCCCCTTGAAACCACACACACTCAGGACGTTGATCTTCACATaGGGGCCCATGGTGAACTGG | + |
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Preference number: 5 (lower is better) Translates to: GSASETEGRGPLKPHTLRTLIFT*GPMVNW Trigger: CCAGTTCACCATGGGCCCCAATGTGAAGATCAACGT...CCTGAGTGTGTGTGGTTTCAAGGGGCCACGTCCCTCTGTTTCACTGGCTGAACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| CDS CCA 90 bp | CGCTTGGGGCTGGTCCCACTGATGCTCTTCTCAAGCTTGGGCACCTaGGGATTCTCTCCCTCAAAGTCTTCCAACACGTTGATCTTCACA | + |
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Preference number: 5 (lower is better) Translates to: RLGLVPLMLFSSLGT*GFSPSKSSNTLIFT Trigger: TGTGAAGATCAACGTGTTGGAAGACTTTGAGGGAGAGAATCCCCAGGTGCCCAAGCTTGAGAAGAGCATCAGTGGGACCAGCCCCAAGCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| CDS-3UTR CAA 90 bp | CACTGCCTTTATAGCCCCCAGGTTTGGTACCAAACATTACCAAAGCCACAGGCCAACTTCTCGGAGAACTaGATGGGGCTGTGCGAGGCG | + |
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Preference number: 5 (lower is better) Translates to: HCLYSPQVWYQTLPKPQANFSEN*MGLCEA Trigger: CGCCTCGCACAGCCCCATCAAGTTCTCCGAGAAGTT...GGCCTGTGGCTTTGGTAATGTTTGGTACCAAACCTGGGGGCTATAAAGGCAGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| CDS-3UTR CAA 90 bp | TCCAAAAGTGTCTGTGCGTTGCATAGGTCCTGTCTTCACAGAAGACAAAAGAGGGGCAGGTGTTCCCGCTaGGGGCTGGTCCCACTGATG | + |
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Preference number: 5 (lower is better) Translates to: SKSVCALHRSCLHRRQKRGRCSR*GLVPLM Trigger: CATCAGTGGGACCAGCCCCAAGCGGGAACACCTGCC...CCTCTTTTGTCTTCTGTGAAGACAGGACCTATGCAACGCACAGACACTTTTGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| CDS-3UTR CAA 90 bp | CACTGCCTTTATAGCCCCCAGGTTTGGTACCAAACATTACCAAAGCCACAGGCCATGCTCTTCTCAAGCTaGGGCACCTGGGGATTCTCT | + |
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Preference number: 5 (lower is better) Translates to: HCLYSPQVWYQTLPKPQAMLFSS*GTWGFS Trigger: AGAGAATCCCCAGGTGCCCAAGCTTGAGAAGAGCAT...GGCCTGTGGCTTTGGTAATGTTTGGTACCAAACCTGGGGGCTATAAAGGCAGTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| CDS-3UTR CAA 90 bp | CAAAGTCACACGTACTCTTTATGCTGCTGTGGCCTGTTGCCCAAGTACAGAAAGGATGTAGTAGTATTCTaGGCCGGCATGGAATTCATA | + |
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Preference number: 5 (lower is better) Translates to: QSHTYSLCCCGLLPKYRKDVVVF*AGMEFI Trigger: TATGAATTCCATGCCGGCCAAGAATACTACTACATC...CTTTCTGTACTTGGGCAACAGGCCACAGCAGCATAAAGAGTACGTGTGACTTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029673.10 |
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| CDS CAA 90 bp | ATGAGGAAGAAGGCGATGCCCACGGCCAGAGGCAGGTGTTCCCGCTaGGGGCTGGTCCCACTGATGCTCTTCTCAAGCTTGGGCACCTGG | + |
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Preference number: 6 (lower is better) Translates to: MRKKAMPTARGRCSR*GLVPLMLFSSLGTW Trigger: CCAGGTGCCCAAGCTTGAGAAGAGCATCAGTGGGACCAGCCCCAAGCGGGAACACCTGCCTCTGGCCGTGGGCATCGCCTTCTTCCTCAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029673.10 ENSMUST00000200436.2 |
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| CDS CAA 72 bp | AAGGCGATGCCCACGGCCAGAGGCAGGTGTTCCCGCTaGGGGCTGGTCCCACTGATGCTCTTCTCAAGCTTG | + |
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Preference number: 6 (lower is better) Translates to: KAMPTARGRCSR*GLVPLMLFSSL Trigger: CAAGCTTGAGAAGAGCATCAGTGGGACCAGCCCCAAGCGGGAACACCTGCCTCTGGCCGTGGGCATCGCCTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029673.10 ENSMUST00000200436.2 |
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| CDS TCA 72 bp | CCAGAGGCAGGTGTTCCCGCTTGGGGCTGGTCCCACTaGTGCTCTTCTCAAGCTTGGGCACCTGGGGATTCT | + |
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Preference number: 6 (lower is better) Translates to: PEAGVPAWGWSH*CSSQAWAPGDS Trigger: AGAATCCCCAGGTGCCCAAGCTTGAGAAGAGCATCAGTGGGACCAGCCCCAAGCGGGAACACCTGCCTCTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029673.10 ENSMUST00000200436.2 |
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| CDS TCA 72 bp | GTACAGCACGTACTGCTCCGCCCCGCCGCCAGGCCCTaGGCTGTTGTAGTGCGGACAGTAAATATCCAGATA | + |
|
Preference number: 6 (lower is better) Translates to: VQHVLLRPAARP*AVVVRTVNIQI Trigger: TATCTGGATATTTACTGTCCGCACTACAACAGCTCAGGGCCTGGCGGCGGGGCGGAGCAGTACGTGCTGTAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029673.10 ENSMUST00000200436.2 |
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| CDS TCA 72 bp | AGAAGGCGCTGTAACGCTGGAACTTCTCGGAGAACTTaGTGGGGCTGTGCGAGGCGTGCTGCCGGTTGCATT | + |
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Preference number: 6 (lower is better) Translates to: RRRCNAGTSRRT*WGCARRAAGCI Trigger: AATGCAACCGGCAGCACGCCTCGCACAGCCCCATCAAGTTCTCCGAGAAGTTCCAGCGTTACAGCGCCTTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029673.10 ENSMUST00000200436.2 |
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| CDS CAA 72 bp | CAGGTTGTGAGTGGGCGTGGAGATGTAGTAGTATTCTaGGCCGGCATGGAATTCATAGCCCAGCGAGAAGGC | + |
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Preference number: 6 (lower is better) Translates to: QVVSGRGDVVVF*AGMEFIAQREG Trigger: GCCTTCTCGCTGGGCTATGAATTCCATGCCGGCCAAGAATACTACTACATCTCCACGCCCACTCACAACCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029673.10 ENSMUST00000200436.2 |
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