Pregenerated sensors for EFNA2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000003070Ensembl transcript IDs: ENSMUST00000003154.7
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGCACCGTGCGCCCTTTCTGGCTCAGGCTTGCCTGGCCTGAGGAATaGAAGGCAAGTCCGCGGTGGGCTCCATCTGGGACCCAAATAACA | + |
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Preference number: 1 (lower is better) Translates to: GTVRPFWLRLAWPEE*KASPRWAPSGTQIT Trigger: TGTTATTTGGGTCCCAGATGGAGCCCACCGCGGACTTGCCTTGCATTCCTCAGGCCAGGCAAGCCTGAGCCAGAAAGGGCGCACGGTGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| 3UTR CCA 90 bp | CAGCTGGAGGCCCCTGGATCTCCGGTATTCCAGGAAGGACAGAGATaGCTTCACCTCATCCCTGTGGCTTGTTCCCTTCCCAGTGTCACC | + |
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Preference number: 1 (lower is better) Translates to: QLEAPGSPVFQEGQR*LHLIPVACSLPSVT Trigger: GGTGACACTGGGAAGGGAACAAGCCACAGGGATGAGGTGAAGCCATCTCTGTCCTTCCTGGAATACCGGAGATCCAGGGGCCTCCAGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| 3UTR CCA 90 bp | GAGGAAACGTGGGTAGAAATCCGAAATCCGTATAAACGTGTGGTGTaGCCAGCTTCACTCAGTCCTTTGCCTGCTGTATTTTTGGTAGGT | + |
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Preference number: 1 (lower is better) Translates to: EETWVEIRNPYKRVV*PASLSPLPAVFLVG Trigger: ACCTACCAAAAATACAGCAGGCAAAGGACTGAGTGAAGCTGGCCACACCACACGTTTATACGGATTTCGGATTTCTACCCACGTTTCCTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| 3UTR CAA 90 bp | AGTCCCCGAGAGGGGCTGGCACCGTGCGCCCTTTCTGGCTCAGGCTaGCCTGGCCTGAGGAATGCAAGGCAAGTCCGCGGTGGGCTCCAT | + |
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Preference number: 2 (lower is better) Translates to: SPREGLAPCALSGSG*PGLRNARQVRGGLH Trigger: ATGGAGCCCACCGCGGACTTGCCTTGCATTCCTCAGGCCAGGCAAGCCTGAGCCAGAAAGGGCGCACGGTGCCAGCCCCTCTCGGGGACT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| 3UTR CAA 90 bp | CCTCCTCCGGCGGGACAGCACCATGAAAGAGAAGCAGCAAGGATTTaGTCTCGGAGGTGGCCGTGGCAGGTCAGAGGGCAAAGGTCACGG | + |
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Preference number: 2 (lower is better) Translates to: PPPAGQHHEREAARI*SRRWPWQVRGQRSR Trigger: CCGTGACCTTTGCCCTCTGACCTGCCACGGCCACCTCCGAGACAAAATCCTTGCTGCTTCTCTTTCATGGTGCTGTCCCGCCGGAGGAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| 3UTR-3UTR GCA 90 bp | CCAGCTTCACTCAGTCCTTTGCCTGCTGTATTTTTGGTAGGTAGCTCCCCTTCCGAGGGGCTGGCACCGTaGGCCCTTTCTGGCTCAGGC | + |
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Preference number: 2 (lower is better) Translates to: PASLSPLPAVFLVGSSPSEGLAP*ALSGSG Trigger: GCCTGAGCCAGAAAGGGCGCACGGTGCCAGCCCCTC...GGAAGGGGAGCTACCTACCAAAAATACAGCAGGCAAAGGACTGAGTGAAGCTGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| 3UTR-3UTR CCA 90 bp | CCAGCTTCACTCAGTCCTTTGCCTGCTGTATTTTTGGTAGGTAGCTCCCCTTCCTCTCGGAGGTGGCCGTaGCAGGTCAGAGGGCAAAGG | + |
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Preference number: 2 (lower is better) Translates to: PASLSPLPAVFLVGSSPSSRRWP*QVRGQR Trigger: CCTTTGCCCTCTGACCTGCCACGGCCACCTCCGAGA...GGAAGGGGAGCTACCTACCAAAAATACAGCAGGCAAAGGACTGAGTGAAGCTGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| 3UTR-3UTR GCA 90 bp | AGTCCGCGGTGGGCTCCATCTGGGACCCAAATAACAGGACACAGAAGAAAGGAGATTGGGACCCCATGTTaGATCCCAGGGACGGATGGA | + |
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Preference number: 2 (lower is better) Translates to: SPRWAPSGTQITGHRRKEIGTPC*IPGTDG Trigger: TCCATCCGTCCCTGGGATGCAACATGGGGTCCCAAT...CTCCTTTCTTCTGTGTCCTGTTATTTGGGTCCCAGATGGAGCCCACCGCGGACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| 3UTR-3UTR CCA 90 bp | CGTATAAACGTGTGGTGTGGCCAGCTTCACTCAGTCCTTTGCCTGCTGTATTTTTGGCTGGAAGAAGAGTaGGGGATGGCACCCCCAGAG | + |
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Preference number: 2 (lower is better) Translates to: RINVWCGQLHSVLCLLYFWLEEE*GMAPPE Trigger: CTCTGGGGGTGCCATCCCCCACTCTTCTTCCAGCCA...AAAATACAGCAGGCAAAGGACTGAGTGAAGCTGGCCACACCACACGTTTATACG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| 3UTR-3UTR TCA 90 bp | CGTATAAACGTGTGGTGTGGCCAGCTTCACTCAGTCCTTTGCCTGCTGTATTTTGCGAGTTGCGAGGGCTaGAGGGTTTCTGAGATGATG | + |
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Preference number: 2 (lower is better) Translates to: RINVWCGQLHSVLCLLYFASCEG*RVSEMM Trigger: CATCATCTCAGAAACCCTTCAGCCCTCGCAACTCGC...AAAATACAGCAGGCAAAGGACTGAGTGAAGCTGGCCACACCACACGTTTATACG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| 3UTR-3UTR CCA 90 bp | ATATATAGAAAACAGAGTGAGGAAACGTGGGTAGAAATCCGAAATCCGTATAAAGTCACGGGGTCCAGGTaGGGCTGGTGTTCTCCGGCC | + |
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Preference number: 2 (lower is better) Translates to: IYRKQSEETWVEIRNPYKVTGSR*GWCSPA Trigger: GGCCGGAGAACACCAGCCCCACCTGGACCCCGTGAC...TTTATACGGATTTCGGATTTCTACCCACGTTTCCTCACTCTGTTTTCTATATAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| 3UTR CCA 72 bp | GCTGGCACCGTGCGCCCTTTCTGGCTCAGGCTTGCCTaGCCTGAGGAATGCAAGGCAAGTCCGCGGTGGGCT | + |
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Preference number: 3 (lower is better) Translates to: AGTVRPFWLRLA*PEECKASPRWA Trigger: AGCCCACCGCGGACTTGCCTTGCATTCCTCAGGCCAGGCAAGCCTGAGCCAGAAAGGGCGCACGGTGCCAGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| 3UTR TCA 72 bp | GAGGGGCGAGTTGCGAGGGCTGAAGGGTTTCTGAGATaGTGTGGGAGTGGGGCCCGAGAGTGGCTGGAAGAA | + |
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Preference number: 3 (lower is better) Translates to: EGRVARAEGFLR*CGSGAREWLEE Trigger: TTCTTCCAGCCACTCTCGGGCCCCACTCCCACATCATCTCAGAAACCCTTCAGCCCTCGCAACTCGCCCCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| 3UTR TCA 72 bp | GACGGATGGATGGCCTCCTCCGGCGGGACAGCACCATaGAAGAGAAGCAGCAAGGATTTTGTCTCGGAGGTG | + |
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Preference number: 3 (lower is better) Translates to: DGWMASSGGTAP*KRSSKDFVSEV Trigger: CACCTCCGAGACAAAATCCTTGCTGCTTCTCTTTCATGGTGCTGTCCCGCCGGAGGAGGCCATCCATCCGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| 3UTR CCA 72 bp | GCCCCTGGATCTCCGGTATTCCAGGAAGGACAGAGATaGCTTCACCTCATCCCTGTGGCTTGTTCCCTTCCC | + |
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Preference number: 3 (lower is better) Translates to: APGSPVFQEGQR*LHLIPVACSLP Trigger: GGGAAGGGAACAAGCCACAGGGATGAGGTGAAGCCATCTCTGTCCTTCCTGGAATACCGGAGATCCAGGGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| 3UTR CCA 72 bp | CTTGCCTGGCCTGAGGAATGCAAGGCAAGTCCGCGGTaGGCTCCATCTGGGACCCAAATAACAGGACACAGA | + |
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Preference number: 3 (lower is better) Translates to: LAWPEECKASPR*APSGTQITGHR Trigger: TCTGTGTCCTGTTATTTGGGTCCCAGATGGAGCCCACCGCGGACTTGCCTTGCATTCCTCAGGCCAGGCAAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| 3UTR CCA 72 bp | AACAGGACACAGAAGAAAGGAGCAGCTGGAGGCCCCTaGATCTCCGGTATTCCAGGAAGGACAGAGATGGCT | + |
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Preference number: 3 (lower is better) Translates to: NRTQKKGAAGGP*ISGIPGRTEMA Trigger: AGCCATCTCTGTCCTTCCTGGAATACCGGAGATCCAGGGGCCTCCAGCTGCTCCTTTCTTCTGTGTCCTGTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| 3UTR CCA 72 bp | TGGGTAGAAATCCGAAATCCGTATAAACGTGTGGTGTaGCCAGCTTCACTCAGTCCTTTGCCTGCTGTATTT | + |
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Preference number: 3 (lower is better) Translates to: WVEIRNPYKRVV*PASLSPLPAVF Trigger: AAATACAGCAGGCAAAGGACTGAGTGAAGCTGGCCACACCACACGTTTATACGGATTTCGGATTTCTACCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| 3UTR CCA 72 bp | TTATATAGAATATATAGAAAACAGAGTGAGGAAACGTaGGTAGAAATCCGAAATCCGTATAAACGTGTGGTG | + |
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Preference number: 3 (lower is better) Translates to: LYRIYRKQSEET*VEIRNPYKRVV Trigger: CACCACACGTTTATACGGATTTCGGATTTCTACCCACGTTTCCTCACTCTGTTTTCTATATATTCTATATAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| CDS-3UTR TCA 90 bp | GTCCCCGAGAGGGGCTGGCACCGTGCGCCCTTTCTGGCTCAGGCTTGCCTGGCCGACGCACATAAACCTTaGGTCGCAGGCAGGGTCGGT | + |
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Preference number: 4 (lower is better) Translates to: VPERGWHRAPFLAQACLADAHKP*VAGRVG Trigger: ACCGACCCTGCCTGCGACTCAAGGTTTATGTGCGTC...GGCCAGGCAAGCCTGAGCCAGAAAGGGCGCACGGTGCCAGCCCCTCTCGGGGAC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| 3UTR CAA 72 bp | GAGGGGCTGGCACCGTGCGCCCTTTCTGGCTCAGGCTaGCCTGGCCTGAGGAATGCAAGGCAAGTCCGCGGT | + |
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Preference number: 4 (lower is better) Translates to: EGLAPCALSGSG*PGLRNARQVRG Trigger: ACCGCGGACTTGCCTTGCATTCCTCAGGCCAGGCAAGCCTGAGCCAGAAAGGGCGCACGGTGCCAGCCCCTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| CDS-3UTR CCA 90 bp | CTCAGGCTTGCCTGGCCTGAGGAATGCAAGGCAAGTCCGCGGTGGGCTCCATCTAAGCCTCGCTGCCGGTaGTCACAGGAGGCGTGGCCC | + |
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Preference number: 4 (lower is better) Translates to: LRLAWPEECKASPRWAPSKPRCR*SQEAWP Trigger: GGGCCACGCCTCCTGTGACCACCGGCAGCGAGGCTT...AGATGGAGCCCACCGCGGACTTGCCTTGCATTCCTCAGGCCAGGCAAGCCTGAG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| CDS-3UTR GCA 90 bp | AGAAGAAAGGAGCAGCTGGAGGCCCCTGGATCTCCGGTATTCCAGGAAGGACAGGGGTCCCCCGGGCGCTaGGGGCCGGTTGCATTCCCA | + |
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Preference number: 4 (lower is better) Translates to: RRKEQLEAPGSPVFQEGQGSPGR*GPVAFP Trigger: TGGGAATGCAACCGGCCCGCAGCGCCCGGGGGACCC...CTGTCCTTCCTGGAATACCGGAGATCCAGGGGCCTCCAGCTGCTCCTTTCTTCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| CDS-3UTR TCA 90 bp | GTCCCCGAGAGGGGCTGGCACCGTGCGCCCTTTCTGGCTCAGGCTTGCCTGGCCTATCCAGGTAGTCGTTaGTGCTCACCTCCACGGTAT | + |
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Preference number: 4 (lower is better) Translates to: VPERGWHRAPFLAQACLAYPGSR*CSPPRY Trigger: ATACCGTGGAGGTGAGCATCAACGACTACCTGGATA...GGCCAGGCAAGCCTGAGCCAGAAAGGGCGCACGGTGCCAGCCCCTCTCGGGGAC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| CDS-3UTR CCA 90 bp | AGCTGGAGGCCCCTGGATCTCCGGTATTCCAGGAAGGACAGAGATGGCTTCACCGTGGTGAGGAAGAGGTaGCAGCCACCCAGGCCGCTG | + |
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Preference number: 4 (lower is better) Translates to: SWRPLDLRYSRKDRDGFTVVRKR*QPPRPL Trigger: CAGCGGCCTGGGTGGCTGCCACCTCTTCCTCACCAC...GGTGAAGCCATCTCTGTCCTTCCTGGAATACCGGAGATCCAGGGGCCTCCAGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| CDS-3UTR CCA 90 bp | GTCCCCGAGAGGGGCTGGCACCGTGCGCCCTTTCTGGCTCAGGCTTGCCTGGCCAAGGGGGTGAAGAGTTaGAACTTCTCTGAGAACTTG | + |
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Preference number: 4 (lower is better) Translates to: VPERGWHRAPFLAQACLAKGVKS*NFSENL Trigger: CAAGTTCTCAGAGAAGTTCCAACTCTTCACCCCCTT...GGCCAGGCAAGCCTGAGCCAGAAAGGGCGCACGGTGCCAGCCCCTCTCGGGGAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| CDS-3UTR TCA 90 bp | AGAAGAAAGGAGCAGCTGGAGGCCCCTGGATCTCCGGTATTCCAGGAAGGACAGACTTCTCTGAGAACTTaGGGGGTCCCCCGGGCGCTG | + |
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Preference number: 4 (lower is better) Translates to: RRKEQLEAPGSPVFQEGQTSLRT*GVPRAL Trigger: CAGCGCCCGGGGGACCCCTCAAGTTCTCAGAGAAGT...CTGTCCTTCCTGGAATACCGGAGATCCAGGGGCCTCCAGCTGCTCCTTTCTTCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| CDS-3UTR CCA 90 bp | AAGGAGCAGCTGGAGGCCCCTGGATCTCCGGTATTCCAGGAAGGACAGAGATGGGGTGAAGATGGGCTCTaGAGCCTCATACAGGGTCTC | + |
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Preference number: 4 (lower is better) Translates to: KEQLEAPGSPVFQEGQRWGEDGL*SLIQGL Trigger: GAGACCCTGTATGAGGCTCCAGAGCCCATCTTCACC...CCATCTCTGTCCTTCCTGGAATACCGGAGATCCAGGGGCCTCCAGCTGCTCCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| CDS-3UTR TCA 90 bp | CCAGCTTCACTCAGTCCTTTGCCTGCTGTATTTTTGGTAGGTAGCTCCCCTTCCTGCATTCCCAGCGCTTaGAGCCTCGCTGCCGGTGGT | + |
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Preference number: 4 (lower is better) Translates to: PASLSPLPAVFLVGSSPSCIPSA*SLAAGG Trigger: ACCACCGGCAGCGAGGCTTCAAGCGCTGGGAATGCA...GGAAGGGGAGCTACCTACCAAAAATACAGCAGGCAAAGGACTGAGTGAAGCTGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| CDS-3UTR GCA 90 bp | CGTATAAACGTGTGGTGTGGCCAGCTTCACTCAGTCCTTTGCCTGCTGTATTTTCGCTTGAAGCCTCGCTaGCGGTGGTCACAGGAGGCG | + |
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Preference number: 4 (lower is better) Translates to: RINVWCGQLHSVLCLLYFRLKPR*RWSQEA Trigger: CGCCTCCTGTGACCACCGGCAGCGAGGCTTCAAGCG...AAAATACAGCAGGCAAAGGACTGAGTGAAGCTGGCCACACCACACGTTTATACG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| CDS-3UTR TCA 90 bp | GATCTCCGGTATTCCAGGAAGGACAGAGATGGCTTCACCTCATCCCTGTGGCTTGAGTTGGAACTTCTCTaGGAACTTGAGGGGTCCCCC | + |
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Preference number: 4 (lower is better) Translates to: DLRYSRKDRDGFTSSLWLELELL*ELEGSP Trigger: GGGGGACCCCTCAAGTTCTCAGAGAAGTTCCAACTC...AAGCCACAGGGATGAGGTGAAGCCATCTCTGTCCTTCCTGGAATACCGGAGATC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| CDS-3UTR TCA 90 bp | CGTATAAACGTGTGGTGTGGCCAGCTTCACTCAGTCCTTTGCCTGCTGTATTTTAGGAGCTGTTACTGGTaGAGATGGGCTCTGGAGCCT | + |
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Preference number: 4 (lower is better) Translates to: RINVWCGQLHSVLCLLYFRSCYW*RWALEP Trigger: AGGCTCCAGAGCCCATCTTCACCAGTAACAGCTCCT...AAAATACAGCAGGCAAAGGACTGAGTGAAGCTGGCCACACCACACGTTTATACG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| CDS-3UTR GCA 90 bp | CGTATAAACGTGTGGTGTGGCCAGCTTCACTCAGTCCTTTGCCTGCTGTATTTTACGGTTCCAGTAGACTaGGTATCGGTCAGCGTTGGC | + |
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Preference number: 4 (lower is better) Translates to: RINVWCGQLHSVLCLLYFTVPVD*VSVSVG Trigger: GCCAACGCTGACCGATACGCAGTCTACTGGAACCGT...AAAATACAGCAGGCAAAGGACTGAGTGAAGCTGGCCACACCACACGTTTATACG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| 3UTR CAA 72 bp | TGGCCAGCTTCACTCAGTCCTTTGCCTGCTGTATTTTaGGTAGGTAGCTCCCCTTCCTTTCCAGTCCTGTAT | + |
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Preference number: 4 (lower is better) Translates to: WPASLSPLPAVF*VGSSPSFPVLY Trigger: ATACAGGACTGGAAAGGAAGGGGAGCTACCTACCAAAAATACAGCAGGCAAAGGACTGAGTGAAGCTGGCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| 3UTR CAA 72 bp | TATAAACGTGTGGTGTGGCCAGCTTCACTCAGTCCTTaGCCTGCTGTATTTTTGGTAGGTAGCTCCCCTTCC | + |
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Preference number: 4 (lower is better) Translates to: YKRVVWPASLSP*PAVFLVGSSPS Trigger: GGAAGGGGAGCTACCTACCAAAAATACAGCAGGCAAAGGACTGAGTGAAGCTGGCCACACCACACGTTTATA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| CDS-3UTR CCA 90 bp | ATATATAGAAAACAGAGTGAGGAAACGTGGGTAGAAATCCGAAATCCGTATAAACGAGGTTGGGAGGTGTaGCAGAGATGTAGTAGTATT | + |
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Preference number: 4 (lower is better) Translates to: IYRKQSEETWVEIRNPYKRGWEV*QRCSSI Trigger: AATACTACTACATCTCTGCCACACCTCCCAACCTCG...TTTATACGGATTTCGGATTTCTACCCACGTTTCCTCACTCTGTTTTCTATATAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| CDS-3UTR CCA 90 bp | ATATATAGAAAACAGAGTGAGGAAACGTGGGTAGAAATCCGAAATCCGTATAAACATACAGGGTCTCATTaGTTGGACGCACATAAACCT | + |
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Preference number: 4 (lower is better) Translates to: IYRKQSEETWVEIRNPYKHTGSH*LDAHKP Trigger: AGGTTTATGTGCGTCCAACCAATGAGACCCTGTATG...TTTATACGGATTTCGGATTTCTACCCACGTTTCCTCACTCTGTTTTCTATATAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| CDS GCA 90 bp | AGGCGTGGCCCTCACCATTCACCATGTACAGGATGTACCGCTCCATaGGCTCAGCCGGGGGCAGCGGCGCCCCGTAGTGTGGGCAGTAGA | + |
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Preference number: 5 (lower is better) Translates to: RRGPHHSPCTGCTAP*AQPGAAAPRSVGSR Trigger: TCTACTGCCCACACTACGGGGCGCCGCTGCCCCCGGCTGAGCGCATGGAGCGGTACATCCTGTACATGGTGAATGGTGAGGGCCACGCCT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| CDS CCA 90 bp | GTACCGCTCCATGCGCTCAGCCGGGGGCAGCGGCGCCCCGTAGTGTaGGCAGTAGATATCCAGGTAGTCGTTGATGCTCACCTCCACGGT | + |
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Preference number: 5 (lower is better) Translates to: VPLHALSRGQRRPVV*AVDIQVVVDAHLHG Trigger: ACCGTGGAGGTGAGCATCAACGACTACCTGGATATCTACTGCCCACACTACGGGGCGCCGCTGCCCCCGGCTGAGCGCATGGAGCGGTAC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| CDS TCA 90 bp | GCAGCGGCGCCCCGTAGTGTGGGCAGTAGATATCCAGGTAGTCGTTaGTGCTCACCTCCACGGTATAGCCGCCGCCATCACCCACAGCGC | + |
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Preference number: 5 (lower is better) Translates to: AAAPRSVGSRYPGSR*CSPPRYSRRHHPQR Trigger: GCGCTGTGGGTGATGGCGGCGGCTATACCGTGGAGGTGAGCATCAACGACTACCTGGATATCTACTGCCCACACTACGGGGCGCCGCTGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| CDS TCA 90 bp | GGAAGAGGTGGCAGCCACCCAGGCCGCTGCAGGAGCTGTTACTGGTaGAGATGGGCTCTGGAGCCTCATACAGGGTCTCATTGGTTGGAC | + |
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Preference number: 5 (lower is better) Translates to: GRGGSHPGRCRSCYW*RWALEPHTGSHWLD Trigger: GTCCAACCAATGAGACCCTGTATGAGGCTCCAGAGCCCATCTTCACCAGTAACAGCTCCTGCAGCGGCCTGGGTGGCTGCCACCTCTTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| CDS TCA 90 bp | CTGGAGCCTCATACAGGGTCTCATTGGTTGGACGCACATAAACCTTaGGTCGCAGGCAGGGTCGGTCCACGAGGTTGGGAGGTGTGGCAG | + |
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Preference number: 5 (lower is better) Translates to: LEPHTGSHWLDAHKP*VAGRVGPRGWEVWQ Trigger: CTGCCACACCTCCCAACCTCGTGGACCGACCCTGCCTGCGACTCAAGGTTTATGTGCGTCCAACCAATGAGACCCTGTATGAGGCTCCAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| CDS-3UTR CAA 90 bp | AGAAGAAAGGAGCAGCTGGAGGCCCCTGGATCTCCGGTATTCCAGGAAGGACAGAACTTCTCTGAGAACTaGAGGGGTCCCCCGGGCGCT | + |
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Preference number: 5 (lower is better) Translates to: RRKEQLEAPGSPVFQEGQNFSEN*RGPPGA Trigger: AGCGCCCGGGGGACCCCTCAAGTTCTCAGAGAAGTT...CTGTCCTTCCTGGAATACCGGAGATCCAGGGGCCTCCAGCTGCTCCTTTCTTCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| CDS CCA 90 bp | GCCACCCAGGCCGCTGCAGGAGCTGTTACTGGTGAAGATGGGCTCTaGAGCCTCATACAGGGTCTCATTGGTTGGACGCACATAAACCTT | + |
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Preference number: 5 (lower is better) Translates to: ATQAAAGAVTGEDGL*SLIQGLIGWTHINL Trigger: AAGGTTTATGTGCGTCCAACCAATGAGACCCTGTATGAGGCTCCAGAGCCCATCTTCACCAGTAACAGCTCCTGCAGCGGCCTGGGTGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| CDS CCA 72 bp | AGGGACCACAGCACAGGGACGGTGGTGAGGAAGAGGTaGCAGCCACCCAGGCCGCTGCAGGAGCTGTTACTG | + |
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Preference number: 6 (lower is better) Translates to: RDHSTGTVVRKR*QPPRPLQELLL Trigger: CAGTAACAGCTCCTGCAGCGGCCTGGGTGGCTGCCACCTCTTCCTCACCACCGTCCCTGTGCTGTGGTCCCT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| CDS CCA 72 bp | GTCGCAGGCAGGGTCGGTCCACGAGGTTGGGAGGTGTaGCAGAGATGTAGTAGTATTCGTGGCCAGGCCGGA | + |
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Preference number: 6 (lower is better) Translates to: VAGRVGPRGWEV*QRCSSIRGQAG Trigger: TCCGGCCTGGCCACGAATACTACTACATCTCTGCCACACCTCCCAACCTCGTGGACCGACCCTGCCTGCGAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| CDS TCA 72 bp | GGCAGCCACCCAGGCCGCTGCAGGAGCTGTTACTGGTaGAGATGGGCTCTGGAGCCTCATACAGGGTCTCAT | + |
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Preference number: 6 (lower is better) Translates to: GSHPGRCRSCYW*RWALEPHTGSH Trigger: ATGAGACCCTGTATGAGGCTCCAGAGCCCATCTTCACCAGTAACAGCTCCTGCAGCGGCCTGGGTGGCTGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| CDS TCA 72 bp | CCCCGTAGTGTGGGCAGTAGATATCCAGGTAGTCGTTaGTGCTCACCTCCACGGTATAGCCGCCGCCATCAC | + |
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Preference number: 6 (lower is better) Translates to: PRSVGSRYPGSR*CSPPRYSRRHH Trigger: GTGATGGCGGCGGCTATACCGTGGAGGTGAGCATCAACGACTACCTGGATATCTACTGCCCACACTACGGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| CDS CCA 72 bp | GCCGCTGCAGGAGCTGTTACTGGTGAAGATGGGCTCTaGAGCCTCATACAGGGTCTCATTGGTTGGACGCAC | + |
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Preference number: 6 (lower is better) Translates to: AAAGAVTGEDGL*SLIQGLIGWTH Trigger: GTGCGTCCAACCAATGAGACCCTGTATGAGGCTCCAGAGCCCATCTTCACCAGTAACAGCTCCTGCAGCGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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| CDS TCA 72 bp | CATACAGGGTCTCATTGGTTGGACGCACATAAACCTTaGGTCGCAGGCAGGGTCGGTCCACGAGGTTGGGAG | + |
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Preference number: 6 (lower is better) Translates to: HTGSHWLDAHKP*VAGRVGPRGWE Trigger: CTCCCAACCTCGTGGACCGACCCTGCCTGCGACTCAAGGTTTATGTGCGTCCAACCAATGAGACCCTGTATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003154.7 |
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