Pregenerated sensors for EFL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038563Ensembl transcript IDs: ENSMUST00000039881.4, ENSMUST00000179489.8, ENSMUST00000207868.2
Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CAGAAGCCTTCCTTATTTGCATACATGCACATTCATACTTCACAGAAATGCTTTCTGGAGTCAGGCAGCTaGAAACTGCCAGTTCTTCTG | + |
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Preference number: 2 (lower is better) Translates to: QKPSLFAYMHIHTSQKCFLESGS*KLPVLL Trigger: CAGAAGAACTGGCAGTTTTCAGCTGCCTGACTCCAG...AAAGCATTTCTGTGAAGTATGAATGTGCATGTATGCAAATAAGGAAGGCTTCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207868.2 |
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| 3UTR-3UTR CCA 90 bp | CAGAAGCCTTCCTTATTTGCATACATGCACATTCATACTTCACAGAAATGCTTTCACACAATCACCTGCTaGAGTCAGGCAGCTGAAAAC | + |
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Preference number: 2 (lower is better) Translates to: QKPSLFAYMHIHTSQKCFHTITC*SQAAEN Trigger: GTTTTCAGCTGCCTGACTCCAGCAGGTGATTGTGTG...AAAGCATTTCTGTGAAGTATGAATGTGCATGTATGCAAATAAGGAAGGCTTCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207868.2 |
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| 3UTR-3UTR TCA 90 bp | TGTGAACATACATCTCATGGCATTTGTTTGACCATTTCTGACCTAGTATTATGTCTGGAGAGGCCAGAATaGGATGCATGGAACACAAAG | + |
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Preference number: 2 (lower is better) Translates to: CEHTSHGICLTISDLVLCLERPE*DAWNTK Trigger: CTTTGTGTTCCATGCATCTCATTCTGGCCTCTCCAG...ACATAATACTAGGTCAGAAATGGTCAAACAAATGCCATGAGATGTATGTTCACA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207868.2 |
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| 3UTR-3UTR GCA 90 bp | AAAAGTACAAATTTCATTATAATCCAGTTTCTGGAGACATCTGCTGGGAGGTTTACTCCAACTGTCATATaGAGCCCATGGAACAGAGGA | + |
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Preference number: 2 (lower is better) Translates to: KSTNFIIIQFLETSAGRFTPTVI*SPWNRG Trigger: TCCTCTGTTCCATGGGCTGCATATGACAGTTGGAGT...AAACCTCCCAGCAGATGTCTCCAGAAACTGGATTATAATGAAATTTGTACTTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207868.2 |
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| 3UTR-3UTR CCA 90 bp | TTATGTGTTACTATCAGTATGACATCTGCATTTGTGGATAGCAAGATAGTACTGTCACAAGAGACCATCTaGAGAGGCCAGAATGAGATG | + |
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Preference number: 2 (lower is better) Translates to: LCVTISMTSAFVDSKIVLSQETI*RGQNEM Trigger: CATCTCATTCTGGCCTCTCCAGATGGTCTCTTGTGA...CAGTACTATCTTGCTATCCACAAATGCAGATGTCATACTGATAGTAACACATAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207868.2 |
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| 3UTR-3UTR GCA 90 bp | TTATGTGTTACTATCAGTATGACATCTGCATTTGTGGATAGCAAGATAGTACTGGAGGCCAGAATGAGATaGATGGAACACAAAGCAAAG | + |
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Preference number: 2 (lower is better) Translates to: LCVTISMTSAFVDSKIVLEARMR*MEHKAK Trigger: CTTTGCTTTGTGTTCCATGCATCTCATTCTGGCCTC...CAGTACTATCTTGCTATCCACAAATGCAGATGTCATACTGATAGTAACACATAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207868.2 |
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| 3UTR GCA 72 bp | AATGTATCTTGCAGAAGCCTTCCTTATTTGCATACATaGACATTCATACTTCACAGAAATGCTTTGCTTTTC | + |
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Preference number: 3 (lower is better) Translates to: NVSCRSLPYLHT*TFILHRNALLF Trigger: GAAAAGCAAAGCATTTCTGTGAAGTATGAATGTGCATGTATGCAAATAAGGAAGGCTTCTGCAAGATACATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207868.2 |
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| CDS-3UTR GCA 90 bp | CAGAAGCCTTCCTTATTTGCATACATGCACATTCATACTTCACAGAAATGCTTTCCATATACCTTAACTTaGCTGCCAGGCGGCTGGAGA | + |
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Preference number: 4 (lower is better) Translates to: QKPSLFAYMHIHTSQKCFPYTLT*LPGGWR Trigger: TCTCCAGCCGCCTGGCAGGCAAGTTAAGGTATATGG...AAAGCATTTCTGTGAAGTATGAATGTGCATGTATGCAAATAAGGAAGGCTTCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207868.2 |
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| 3UTR CAA 72 bp | TTCTGGAGACATCTGCTGGGAGGTTTAAAATGTATCTaGCAGAAGCCTTCCTTATTTGCATACATGCACATT | + |
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Preference number: 4 (lower is better) Translates to: FWRHLLGGLKCI*QKPSLFAYMHI Trigger: AATGTGCATGTATGCAAATAAGGAAGGCTTCTGCAAGATACATTTTAAACCTCCCAGCAGATGTCTCCAGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207868.2 |
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| 3UTR CAA 72 bp | CAAAGCTTTTGTGAACATACATCTCATGGCATTTGTTaGACCATTTCTGACCTAGTATTATGTGTTACTATC | + |
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Preference number: 4 (lower is better) Translates to: QSFCEHTSHGIC*TISDLVLCVTI Trigger: GATAGTAACACATAATACTAGGTCAGAAATGGTCAAACAAATGCCATGAGATGTATGTTCACAAAAGCTTTG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207868.2 |
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| CDS GCA 90 bp | ATGTACTTCCGGGCCTGGTTCTCGGAATCCGCCTTCTCCCCAAAGTaGAGGTACTCCTCCTCCGTGGTCGGCACCCAGAACGGGTCGCTG | + |
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Preference number: 5 (lower is better) Translates to: MYFRAWFSESAFSPK*RYSSSVVGTQNGSL Trigger: CAGCGACCCGTTCTGGGTGCCGACCACGGAGGAGGAGTACCTGCACTTTGGGGAGAAGGCGGATTCCGAGAACCAGGCCCGGAAGTACAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CCA 90 bp | GAACGGGTCGCTGGGAATGACCTCCCAGTGGCTGAACACCAGCTGTaGGCTGGCCAGTCCGCTGGTCCTCTTCCTGATCTCATCCGCAAA | + |
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Preference number: 5 (lower is better) Translates to: ERVAGNDLPVAEHQL*AGQSAGPLPDLIRK Trigger: TTTGCGGATGAGATCAGGAAGAGGACCAGCGGACTGGCCAGCCCACAGCTGGTGTTCAGCCACTGGGAGGTCATTCCCAGCGACCCGTTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS GCA 90 bp | GCCGAGGACATCACTGGTGGCCATGATGTCACATGTGTACATAGCTaGCATCAGGCGTTGAGGTTTCACCTGCAGAGCGTAGCGGCAGGC | + |
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Preference number: 5 (lower is better) Translates to: AEDITGGHDVTCVHS*HQALRFHLQSVAAG Trigger: GCCTGCCGCTACGCTCTGCAGGTGAAACCTCAACGCCTGATGGCAGCTATGTACACATGTGACATCATGGCCACCAGTGATGTCCTCGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CCA 90 bp | CCCATGAGCGGCTCCTCACACATGGGGCCAGAGAGGGTCGCAAGCTaGAAGCCACTCACAATGCTATTGCCAAAGTCTCGGAATCTGCTG | + |
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Preference number: 5 (lower is better) Translates to: PMSGSSHMGPERVAS*KPLTMLLPKSRNLL Trigger: CAGCAGATTCCGAGACTTTGGCAATAGCATTGTGAGTGGCTTCCAGCTTGCGACCCTCTCTGGCCCCATGTGTGAGGAGCCGCTCATGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS TCA 90 bp | CGTCCCTTCCTTCATCTCTTCCTGAAGCACTCGACCTTCTCGCTTTaGCAGCACGGCATAGACTCGGCCGAGGACATCACTGGTGGCCAT | + |
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Preference number: 5 (lower is better) Translates to: RPFLHLFLKHSTFSL*QHGIDSAEDITGGH Trigger: ATGGCCACCAGTGATGTCCTCGGCCGAGTCTATGCCGTGCTGTCAAAGCGAGAAGGTCGAGTGCTTCAGGAAGAGATGAAGGAAGGGACG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS GCA 90 bp | CTCTTGGCTGCTTTCCTCCTGGGAAACAGGCTGGCGGCTTACACTTaGCACATCTGGTTCATCACCTCTTGGCTCATCTTCATGGGGACT | + |
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Preference number: 5 (lower is better) Translates to: LLAAFLLGNRLAAYT*HIWFITSWLIFMGT Trigger: AGTCCCCATGAAGATGAGCCAAGAGGTGATGAACCAGATGTGGCAAGTGTAAGCCGCCAGCCTGTTTCCCAGGAGGAAAGCAGCCAAGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS GCA 90 bp | TGGGGCCAGAGAGGGTCGCAAGCTGGAAGCCACTCACAATGCTATTaGCAAAGTCTCGGAATCTGCTGGCCTCTTTTGATTCTCTGCCAG | + |
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Preference number: 5 (lower is better) Translates to: WGQRGSQAGSHSQCY*QSLGICWPLLILCQ Trigger: CTGGCAGAGAATCAAAAGAGGCCAGCAGATTCCGAGACTTTGGCAATAGCATTGTGAGTGGCTTCCAGCTTGCGACCCTCTCTGGCCCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CCA 90 bp | AATGCGATGAAGGCCTCTTGGCTGCTTTCCTCCTGGGAAACAGGCTaGCGGCTTACACTTGCCACATCTGGTTCATCACCTCTTGGCTCA | + |
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Preference number: 5 (lower is better) Translates to: NAMKASWLLSSWETG*RLTLATSGSSPLGS Trigger: TGAGCCAAGAGGTGATGAACCAGATGTGGCAAGTGTAAGCCGCCAGCCTGTTTCCCAGGAGGAAAGCAGCCAAGAGGCCTTCATCGCATT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS TCA 90 bp | CTCGTAAGTCATCCAAACATCGCTGAAGGTGGACCTCCCCGGCCGTaGCCAGGACATGCTCTCCTGTTTCCTGAATTAAAACCTGGACAC | + |
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Preference number: 5 (lower is better) Translates to: LVSHPNIAEGGPPRP*PGHALLFPELKPGH Trigger: GTGTCCAGGTTTTAATTCAGGAAACAGGAGAGCATGTCCTGGTCACGGCCGGGGAGGTCCACCTTCAGCGATGTTTGGATGACTTACGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS GCA 90 bp | CACACATGGGGCCAGAGAGGGTCGCAAGCTGGAAGCCACTCACAATaGTATTGCCAAAGTCTCGGAATCTGCTGGCCTCTTTTGATTCTC | + |
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Preference number: 5 (lower is better) Translates to: HTWGQRGSQAGSHSQ*YCQSLGICWPLLIL Trigger: GAGAATCAAAAGAGGCCAGCAGATTCCGAGACTTTGGCAATAGCATTGTGAGTGGCTTCCAGCTTGCGACCCTCTCTGGCCCCATGTGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS TCA 90 bp | ATGTGGATCTTTGCAAACCTTTCTCGTAAGTCATCCAAACATCGCTaGAGGTGGACCTCCCCGGCCGTGACCAGGACATGCTCTCCTGTT | + |
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Preference number: 5 (lower is better) Translates to: MWIFANLSRKSSKHR*RWTSPAVTRTCSPV Trigger: AACAGGAGAGCATGTCCTGGTCACGGCCGGGGAGGTCCACCTTCAGCGATGTTTGGATGACTTACGAGAAAGGTTTGCAAAGATCCACAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS GCA 90 bp | CAAGCTGGAAGCCACTCACAATGCTATTGCCAAAGTCTCGGAATCTaGTGGCCTCTTTTGATTCTCTGCCAGCTGGGCCAGACCATACTG | + |
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Preference number: 5 (lower is better) Translates to: QAGSHSQCYCQSLGI*WPLLILCQLGQTIL Trigger: CAGTATGGTCTGGCCCAGCTGGCAGAGAATCAAAAGAGGCCAGCAGATTCCGAGACTTTGGCAATAGCATTGTGAGTGGCTTCCAGCTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS TCA 90 bp | CAGCTGGGCCAGACCATACTGAGTTCTGGAAATCTTCACTTCTACTaGCTAGGATGTTGGGCCCACATTTCCTTGGGCCAAATGACCAGA | + |
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Preference number: 5 (lower is better) Translates to: QLGQTILSSGNLHFY*LGCWAHISLGQMTR Trigger: TCTGGTCATTTGGCCCAAGGAAATGTGGGCCCAACATCCTAGTCAGTAGAAGTGAAGATTTCCAGAACTCAGTATGGTCTGGCCCAGCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS GCA 90 bp | TGCTATTGCCAAAGTCTCGGAATCTGCTGGCCTCTTTTGATTCTCTaGCAGCTGGGCCAGACCATACTGAGTTCTGGAAATCTTCACTTC | + |
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Preference number: 5 (lower is better) Translates to: CYCQSLGICWPLLIL*QLGQTILSSGNLHF Trigger: GAAGTGAAGATTTCCAGAACTCAGTATGGTCTGGCCCAGCTGGCAGAGAATCAAAAGAGGCCAGCAGATTCCGAGACTTTGGCAATAGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CCA 90 bp | GCCTCTTTTGATTCTCTGCCAGCTGGGCCAGACCATACTGAGTTCTaGAAATCTTCACTTCTACTGACTAGGATGTTGGGCCCACATTTC | + |
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Preference number: 5 (lower is better) Translates to: ASFDSLPAGPDHTEF*KSSLLLTRMLGPHF Trigger: GAAATGTGGGCCCAACATCCTAGTCAGTAGAAGTGAAGATTTCCAGAACTCAGTATGGTCTGGCCCAGCTGGCAGAGAATCAAAAGAGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CCA 90 bp | ACTAGGATGTTGGGCCCACATTTCCTTGGGCCAAATGACCAGATCTaGTCAACAGTGTTCCTCCATTTCCTCCCTGTTAGATGTTTCTCT | + |
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Preference number: 5 (lower is better) Translates to: TRMLGPHFLGPNDQI*STVFLHFLPVRCFS Trigger: AGAGAAACATCTAACAGGGAGGAAATGGAGGAACACTGTTGACCAGATCTGGTCATTTGGCCCAAGGAAATGTGGGCCCAACATCCTAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS-3UTR CAA 90 bp | CATGGCATTTGTTTGACCATTTCTGACCTAGTATTATGTGTTACTATCAGTATGTCCATATACCTTAACTaGCCTGCCAGGCGGCTGGAG | + |
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Preference number: 5 (lower is better) Translates to: HGICLTISDLVLCVTISMSIYLN*PARRLE Trigger: CTCCAGCCGCCTGGCAGGCAAGTTAAGGTATATGGA...CATACTGATAGTAACACATAATACTAGGTCAGAAATGGTCAAACAAATGCCATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207868.2 |
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| CDS GCA 90 bp | TTGCTTTGCTCTTCTTTTGTTTGGTGTATGACAGCAACTTTTTGCTaGCTGCCTATTTCTTCATTGACCATGTCAACTTTGGGAGGTTTT | + |
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Preference number: 5 (lower is better) Translates to: LLCSSFVWCMTATFC*LPISSLTMSTLGGF Trigger: AAAACCTCCCAAAGTTGACATGGTCAATGAAGAAATAGGCAGGCAGCAAAAAGTTGCTGTCATACACCAAACAAAAGAAGAGCAAAGCAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CCA 90 bp | ATTGACCATGTCAACTTTGGGAGGTTTTGTGATCGTTTCTCTGAATaGAATAATGGGTTCAGATACACTGATGTGGATCTTTGCAAACCT | + |
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Preference number: 5 (lower is better) Translates to: IDHVNFGRFCDRFSE*NNGFRYTDVDLCKP Trigger: AGGTTTGCAAAGATCCACATCAGTGTATCTGAACCCATTATTCCATTCAGAGAAACGATCACAAAACCTCCCAAAGTTGACATGGTCAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CCA 72 bp | CATGGGGACTTGTTTCAAGGGCACCTCCATCCTGGGTaGGTCCCTGGGATGTTTGCCCCTGGGCTGCTGCAA | + |
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Preference number: 6 (lower is better) Translates to: HGDLFQGHLHPG*VPGMFAPGLLQ Trigger: TTGCAGCAGCCCAGGGGCAAACATCCCAGGGACCCACCCAGGATGGAGGTGCCCTTGAAACAAGTCCCCATG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CCA 72 bp | TTCCGCTTCCGCACGGCATTCATGTACTTCCGGGCCTaGTTCTCGGAATCCGCCTTCTCCCCAAAGTGCAGG | + |
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Preference number: 6 (lower is better) Translates to: FRFRTAFMYFRA*FSESAFSPKCR Trigger: CCTGCACTTTGGGGAGAAGGCGGATTCCGAGAACCAGGCCCGGAAGTACATGAATGCCGTGCGGAAGCGGAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CAA 90 bp | CCGTCCCTTCCTTCATCTCTTCCTGAAGCACTCGACCTTCTCGCTTaGACAGCACGGCATAGACTCGGCCGAGGACATCACTGGTGGCCA | + |
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Preference number: 6 (lower is better) Translates to: PSLPSSLPEALDLLA*TARHRLGRGHHWWP Trigger: TGGCCACCAGTGATGTCCTCGGCCGAGTCTATGCCGTGCTGTCAAAGCGAGAAGGTCGAGTGCTTCAGGAAGAGATGAAGGAAGGGACGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CCA 72 bp | GGCTCCTCACACATGGGGCCAGAGAGGGTCGCAAGCTaGAAGCCACTCACAATGCTATTGCCAAAGTCTCGG | + |
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Preference number: 6 (lower is better) Translates to: GSSHMGPERVAS*KPLTMLLPKSR Trigger: CCGAGACTTTGGCAATAGCATTGTGAGTGGCTTCCAGCTTGCGACCCTCTCTGGCCCCATGTGTGAGGAGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CCA 72 bp | AAAGTCCTGGAGGCCTCCAATTCCCAGCACGTTTCCTaGGGGGACTTCTTCCAGATCTTCCAGCTCCCTTCC | + |
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Preference number: 6 (lower is better) Translates to: KVLEASNSQHVS*GDFFQIFQLPS Trigger: GGAAGGGAGCTGGAAGATCTGGAAGAAGTCCCCCCAGGAAACGTGCTGGGAATTGGAGGCCTCCAGGACTTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CAA 90 bp | CCTCTTGGCTGCTTTCCTCCTGGGAAACAGGCTGGCGGCTTACACTaGCCACATCTGGTTCATCACCTCTTGGCTCATCTTCATGGGGAC | + |
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Preference number: 6 (lower is better) Translates to: PLGCFPPGKQAGGLH*PHLVHHLLAHLHGD Trigger: GTCCCCATGAAGATGAGCCAAGAGGTGATGAACCAGATGTGGCAAGTGTAAGCCGCCAGCCTGTTTCCCAGGAGGAAAGCAGCCAAGAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CAA 90 bp | TCTTCTGGAAGCGGTATGGCACGGACACTGAGAGTGGCCAGTTTGTaGGGAGTCGGTATGGTGATAAGCCCATCCGAGTCCACGTGGATC | + |
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Preference number: 6 (lower is better) Translates to: SSGSGMARTLRVASL*GVGMVISPSESTWI Trigger: GATCCACGTGGACTCGGATGGGCTTATCACCATACCGACTCCCAACAAACTGGCCACTCTCAGTGTCCGTGCCATACCGCTTCCAGAAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CAA 90 bp | ACTTCTTCTGGAAGCGGTATGGCACGGACACTGAGAGTGGCCAGTTaGTTGGGAGTCGGTATGGTGATAAGCCCATCCGAGTCCACGTGG | + |
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Preference number: 6 (lower is better) Translates to: TSSGSGMARTLRVAS*LGVGMVISPSESTW Trigger: CCACGTGGACTCGGATGGGCTTATCACCATACCGACTCCCAACAAACTGGCCACTCTCAGTGTCCGTGCCATACCGCTTCCAGAAGAAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS GCA 72 bp | GGCCAGAGAGGGTCGCAAGCTGGAAGCCACTCACAATaGTATTGCCAAAGTCTCGGAATCTGCTGGCCTCTT | + |
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Preference number: 6 (lower is better) Translates to: GQRGSQAGSHSQ*YCQSLGICWPL Trigger: AAGAGGCCAGCAGATTCCGAGACTTTGGCAATAGCATTGTGAGTGGCTTCCAGCTTGCGACCCTCTCTGGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CCA 72 bp | AAGGCCTCTTGGCTGCTTTCCTCCTGGGAAACAGGCTaGCGGCTTACACTTGCCACATCTGGTTCATCACCT | + |
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Preference number: 6 (lower is better) Translates to: KASWLLSSWETG*RLTLATSGSSP Trigger: AGGTGATGAACCAGATGTGGCAAGTGTAAGCCGCCAGCCTGTTTCCCAGGAGGAAAGCAGCCAAGAGGCCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CAA 72 bp | TCAACAGCAACTCTCACAATCGGGGTGGCTTCAAAGTaGAGGGGAATAAACGGTGGGCAGGACGGCAGGCTG | + |
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Preference number: 6 (lower is better) Translates to: STATLTIGVASK*RGINGGQDGRL Trigger: CAGCCTGCCGTCCTGCCCACCGTTTATTCCCCTCAACTTTGAAGCCACCCCGATTGTGAGAGTTGCTGTTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CAA 72 bp | CCTTCATCTCTTCCTGAAGCACTCGACCTTCTCGCTTaGACAGCACGGCATAGACTCGGCCGAGGACATCAC | + |
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Preference number: 6 (lower is better) Translates to: PSSLPEALDLLA*TARHRLGRGHH Trigger: GTGATGTCCTCGGCCGAGTCTATGCCGTGCTGTCAAAGCGAGAAGGTCGAGTGCTTCAGGAAGAGATGAAGG 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS TCA 72 bp | TTTGCAAACCTTTCTCGTAAGTCATCCAAACATCGCTaGAGGTGGACCTCCCCGGCCGTGACCAGGACATGC | + |
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Preference number: 6 (lower is better) Translates to: FANLSRKSSKHR*RWTSPAVTRTC Trigger: GCATGTCCTGGTCACGGCCGGGGAGGTCCACCTTCAGCGATGTTTGGATGACTTACGAGAAAGGTTTGCAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS TCA 72 bp | CTTCATCTCTTCCTGAAGCACTCGACCTTCTCGCTTTaGCAGCACGGCATAGACTCGGCCGAGGACATCACT | + |
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Preference number: 6 (lower is better) Translates to: LHLFLKHSTFSL*QHGIDSAEDIT Trigger: AGTGATGTCCTCGGCCGAGTCTATGCCGTGCTGTCAAAGCGAGAAGGTCGAGTGCTTCAGGAAGAGATGAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CCA 72 bp | CTGGGAAACAGGCTGGCGGCTTACACTTGCCACATCTaGTTCATCACCTCTTGGCTCATCTTCATGGGGACT | + |
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Preference number: 6 (lower is better) Translates to: LGNRLAAYTCHI*FITSWLIFMGT Trigger: AGTCCCCATGAAGATGAGCCAAGAGGTGATGAACCAGATGTGGCAAGTGTAAGCCGCCAGCCTGTTTCCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CAA 72 bp | CATGATGTCACATGTGTACATAGCTGCCATCAGGCGTaGAGGTTTCACCTGCAGAGCGTAGCGGCAGGCTTC | + |
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Preference number: 6 (lower is better) Translates to: HDVTCVHSCHQA*RFHLQSVAAGF Trigger: GAAGCCTGCCGCTACGCTCTGCAGGTGAAACCTCAACGCCTGATGGCAGCTATGTACACATGTGACATCATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CAA 90 bp | ATGGGGCCAGAGAGGGTCGCAAGCTGGAAGCCACTCACAATGCTATaGCCAAAGTCTCGGAATCTGCTGGCCTCTTTTGATTCTCTGCCA | + |
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Preference number: 6 (lower is better) Translates to: MGPERVASWKPLTML*PKSRNLLASFDSLP Trigger: TGGCAGAGAATCAAAAGAGGCCAGCAGATTCCGAGACTTTGGCAATAGCATTGTGAGTGGCTTCCAGCTTGCGACCCTCTCTGGCCCCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CAA 90 bp | ACTGGTGGCCATGATGTCACATGTGTACATAGCTGCCATCAGGCGTaGAGGTTTCACCTGCAGAGCGTAGCGGCAGGCTTCTTTCATGGT | + |
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Preference number: 6 (lower is better) Translates to: TGGHDVTCVHSCHQA*RFHLQSVAAGFFHG Trigger: ACCATGAAAGAAGCCTGCCGCTACGCTCTGCAGGTGAAACCTCAACGCCTGATGGCAGCTATGTACACATGTGACATCATGGCCACCAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS TCA 72 bp | CATCCAAACATCGCTGAAGGTGGACCTCCCCGGCCGTaGCCAGGACATGCTCTCCTGTTTCCTGAATTAAAA | + |
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Preference number: 6 (lower is better) Translates to: HPNIAEGGPPRP*PGHALLFPELK Trigger: TTTTAATTCAGGAAACAGGAGAGCATGTCCTGGTCACGGCCGGGGAGGTCCACCTTCAGCGATGTTTGGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS GCA 72 bp | AGCCACTCACAATGCTATTGCCAAAGTCTCGGAATCTaGTGGCCTCTTTTGATTCTCTGCCAGCTGGGCCAG | + |
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Preference number: 6 (lower is better) Translates to: SHSQCYCQSLGI*WPLLILCQLGQ Trigger: CTGGCCCAGCTGGCAGAGAATCAAAAGAGGCCAGCAGATTCCGAGACTTTGGCAATAGCATTGTGAGTGGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CCA 72 bp | GCGGCTTACACTTGCCACATCTGGTTCATCACCTCTTaGCTCATCTTCATGGGGACTTGTTTCAAGGGCACC | + |
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Preference number: 6 (lower is better) Translates to: AAYTCHIWFITS*LIFMGTCFKGT Trigger: GGTGCCCTTGAAACAAGTCCCCATGAAGATGAGCCAAGAGGTGATGAACCAGATGTGGCAAGTGTAAGCCGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CAA 72 bp | GGCGGCTTACACTTGCCACATCTGGTTCATCACCTCTaGGCTCATCTTCATGGGGACTTGTTTCAAGGGCAC | + |
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Preference number: 6 (lower is better) Translates to: GGLHLPHLVHHL*AHLHGDLFQGH Trigger: GTGCCCTTGAAACAAGTCCCCATGAAGATGAGCCAAGAGGTGATGAACCAGATGTGGCAAGTGTAAGCCGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CAA 72 bp | TGCTTTCCTCCTGGGAAACAGGCTGGCGGCTTACACTaGCCACATCTGGTTCATCACCTCTTGGCTCATCTT | + |
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Preference number: 6 (lower is better) Translates to: CFPPGKQAGGLH*PHLVHHLLAHL Trigger: AAGATGAGCCAAGAGGTGATGAACCAGATGTGGCAAGTGTAAGCCGCCAGCCTGTTTCCCAGGAGGAAAGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CAA 90 bp | TGCTTTGGTTCAACAGCAACTCTCACAATCGGGGTGGCTTCAAAGTaGAGGGGAATAAACGGTGGGCAGGACGGCAGGCTGCACAAAGTT | + |
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Preference number: 6 (lower is better) Translates to: CFGSTATLTIGVASK*RGINGGQDGRLHKV Trigger: AACTTTGTGCAGCCTGCCGTCCTGCCCACCGTTTATTCCCCTCAACTTTGAAGCCACCCCGATTGTGAGAGTTGCTGTTGAACCAAAGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS TCA 72 bp | ATGATGAACATGTCCGTCCCTTCCTTCATCTCTTCCTaGAGCACTCGACCTTCTCGCTTTGACAGCACGGCA | + |
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Preference number: 6 (lower is better) Translates to: MMNMSVPSFISS*STRPSRFDSTA Trigger: TGCCGTGCTGTCAAAGCGAGAAGGTCGAGTGCTTCAGGAAGAGATGAAGGAAGGGACGGACATGTTCATCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CCA 72 bp | GGAGTCGGTATGGTGATAAGCCCATCCGAGTCCACGTaGATCCCCTCTGGGATTTTGCTTTGCTCTTCTTTT | + |
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Preference number: 6 (lower is better) Translates to: GVGMVISPSEST*IPSGILLCSSF Trigger: AAAAGAAGAGCAAAGCAAAATCCCAGAGGGGATCCACGTGGACTCGGATGGGCTTATCACCATACCGACTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CAA 72 bp | TGCTATTGCCAAAGTCTCGGAATCTGCTGGCCTCTTTaGATTCTCTGCCAGCTGGGCCAGACCATACTGAGT | + |
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Preference number: 6 (lower is better) Translates to: CYCQSLGICWPL*ILCQLGQTILS Trigger: ACTCAGTATGGTCTGGCCCAGCTGGCAGAGAATCAAAAGAGGCCAGCAGATTCCGAGACTTTGGCAATAGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CAA 72 bp | GAGAGGGTCGCAAGCTGGAAGCCACTCACAATGCTATaGCCAAAGTCTCGGAATCTGCTGGCCTCTTTTGAT | + |
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Preference number: 6 (lower is better) Translates to: ERVASWKPLTML*PKSRNLLASFD Trigger: ATCAAAAGAGGCCAGCAGATTCCGAGACTTTGGCAATAGCATTGTGAGTGGCTTCCAGCTTGCGACCCTCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CAA 72 bp | GCAAAGCCAAAGCTTTCCGCTACAGGCAGCACAGCCTaGATGATGAACATGTCCGTCCCTTCCTTCATCTCT | + |
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Preference number: 6 (lower is better) Translates to: AKPKLSATGSTA*MMNMSVPSFIS Trigger: AGAGATGAAGGAAGGGACGGACATGTTCATCATCAAGGCTGTGCTGCCTGTAGCGGAAAGCTTTGGCTTTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CAA 90 bp | TCCTTTCTGGGAAGTCTCTTCAAAGGGCTCCGAGCAGACATCTTGTaGCTCTTGGTTTTCATCTCCAACGTGACAGGTTTTACCTCCCCC | + |
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Preference number: 6 (lower is better) Translates to: SFLGSLFKGLRADIL*LLVFISNVTGFTSP Trigger: GGGGGAGGTAAAACCTGTCACGTTGGAGATGAAAACCAAGAGCAACAAGATGTCTGCTCGGAGCCCTTTGAAGAGACTTCCCAGAAAGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS GCA 72 bp | CAAAGTCTCGGAATCTGCTGGCCTCTTTTGATTCTCTaGCAGCTGGGCCAGACCATACTGAGTTCTGGAAAT | + |
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Preference number: 6 (lower is better) Translates to: QSLGICWPLLIL*QLGQTILSSGN Trigger: ATTTCCAGAACTCAGTATGGTCTGGCCCAGCTGGCAGAGAATCAAAAGAGGCCAGCAGATTCCGAGACTTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS GCA 72 bp | AGAGGGTCGCAAGCTGGAAGCCACTCACAATGCTATTaGCAAAGTCTCGGAATCTGCTGGCCTCTTTTGATT | + |
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Preference number: 6 (lower is better) Translates to: RGSQAGSHSQCY*QSLGICWPLLI Trigger: AATCAAAAGAGGCCAGCAGATTCCGAGACTTTGGCAATAGCATTGTGAGTGGCTTCCAGCTTGCGACCCTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CCA 72 bp | TTGGGCCCACATTTCCTTGGGCCAAATGACCAGATCTaGTCAACAGTGTTCCTCCATTTCCTCCCTGTTAGA | + |
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Preference number: 6 (lower is better) Translates to: LGPHFLGPNDQI*STVFLHFLPVR Trigger: TCTAACAGGGAGGAAATGGAGGAACACTGTTGACCAGATCTGGTCATTTGGCCCAAGGAAATGTGGGCCCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CAA 72 bp | CTGGGAAGTCTCTTCAAAGGGCTCCGAGCAGACATCTaGTTGCTCTTGGTTTTCATCTCCAACGTGACAGGT | + |
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Preference number: 6 (lower is better) Translates to: LGSLFKGLRADI*LLLVFISNVTG Trigger: ACCTGTCACGTTGGAGATGAAAACCAAGAGCAACAAGATGTCTGCTCGGAGCCCTTTGAAGAGACTTCCCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CAA 90 bp | CACTCACAATGCTATTGCCAAAGTCTCGGAATCTGCTGGCCTCTTTaGATTCTCTGCCAGCTGGGCCAGACCATACTGAGTTCTGGAAAT | + |
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Preference number: 6 (lower is better) Translates to: HSQCYCQSLGICWPL*ILCQLGQTILSSGN Trigger: ATTTCCAGAACTCAGTATGGTCTGGCCCAGCTGGCAGAGAATCAAAAGAGGCCAGCAGATTCCGAGACTTTGGCAATAGCATTGTGAGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CAA 90 bp | GTCTCCTTTCTGGGAAGTCTCTTCAAAGGGCTCCGAGCAGACATCTaGTTGCTCTTGGTTTTCATCTCCAACGTGACAGGTTTTACCTCC | + |
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Preference number: 6 (lower is better) Translates to: VSFLGSLFKGLRADI*LLLVFISNVTGFTS Trigger: GGAGGTAAAACCTGTCACGTTGGAGATGAAAACCAAGAGCAACAAGATGTCTGCTCGGAGCCCTTTGAAGAGACTTCCCAGAAAGGAGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CAA 72 bp | CTCTTCAAAGGGCTCCGAGCAGACATCTTGTTGCTCTaGGTTTTCATCTCCAACGTGACAGGTTTTACCTCC | + |
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Preference number: 6 (lower is better) Translates to: LFKGLRADILLL*VFISNVTGFTS Trigger: GGAGGTAAAACCTGTCACGTTGGAGATGAAAACCAAGAGCAACAAGATGTCTGCTCGGAGCCCTTTGAAGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CAA 90 bp | GACCATACTGAGTTCTGGAAATCTTCACTTCTACTGACTAGGATGTaGGGCCCACATTTCCTTGGGCCAAATGACCAGATCTGGTCAACA | + |
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Preference number: 6 (lower is better) Translates to: DHTEFWKSSLLLTRM*GPHFLGPNDQIWST Trigger: TGTTGACCAGATCTGGTCATTTGGCCCAAGGAAATGTGGGCCCAACATCCTAGTCAGTAGAAGTGAAGATTTCCAGAACTCAGTATGGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS TCA 72 bp | CAGACCATACTGAGTTCTGGAAATCTTCACTTCTACTaGCTAGGATGTTGGGCCCACATTTCCTTGGGCCAA | + |
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Preference number: 6 (lower is better) Translates to: QTILSSGNLHFY*LGCWAHISLGQ Trigger: TTGGCCCAAGGAAATGTGGGCCCAACATCCTAGTCAGTAGAAGTGAAGATTTCCAGAACTCAGTATGGTCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CAA 72 bp | GAGTTCTGGAAATCTTCACTTCTACTGACTAGGATGTaGGGCCCACATTTCCTTGGGCCAAATGACCAGATC | + |
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Preference number: 6 (lower is better) Translates to: EFWKSSLLLTRM*GPHFLGPNDQI Trigger: GATCTGGTCATTTGGCCCAAGGAAATGTGGGCCCAACATCCTAGTCAGTAGAAGTGAAGATTTCCAGAACTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CAA 72 bp | GGAAGTCTCTTCAAAGGGCTCCGAGCAGACATCTTGTaGCTCTTGGTTTTCATCTCCAACGTGACAGGTTTT | + |
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Preference number: 6 (lower is better) Translates to: GSLFKGLRADIL*LLVFISNVTGF Trigger: AAAACCTGTCACGTTGGAGATGAAAACCAAGAGCAACAAGATGTCTGCTCGGAGCCCTTTGAAGAGACTTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CCA 72 bp | TTCTACCCTCGTTCAAGGAGGATGTCAAAAGCTCCATaGAACGAATCAAGTCGCTGTTTTCTTCCAGAATCC | + |
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Preference number: 6 (lower is better) Translates to: FYPRSRRMSKAP*NESSRCFLPES Trigger: GGATTCTGGAAGAAAACAGCGACTTGATTCGTTCCATGGAGCTTTTGACATCCTCCTTGAACGAGGGTAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CAA 72 bp | TTCCCATATTTTCTCTTGGGTCTTCTGATGAATGGCTaGGGTATTTCTACCCTCGTTCAAGGAGGATGTCAA | + |
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Preference number: 6 (lower is better) Translates to: FPYFLLGLLMNG*GISTLVQGGCQ Trigger: TTGACATCCTCCTTGAACGAGGGTAGAAATACCCAAGCCATTCATCAGAAGACCCAAGAGAAAATATGGGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CAA 90 bp | TCCTTTGAATTCCCATATTTTCTCTTGGGTCTTCTGATGAATGGCTaGGGTATTTCTACCCTCGTTCAAGGAGGATGTCAAAAGCTCCAT | + |
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Preference number: 6 (lower is better) Translates to: SFEFPYFLLGLLMNG*GISTLVQGGCQKLH Trigger: ATGGAGCTTTTGACATCCTCCTTGAACGAGGGTAGAAATACCCAAGCCATTCATCAGAAGACCCAAGAGAAAATATGGGAATTCAAAGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CAA 90 bp | GTTTGGTGTATGACAGCAACTTTTTGCTGCCTGCCTATTTCTTCATaGACCATGTCAACTTTGGGAGGTTTTGTGATCGTTTCTCTGAAT | + |
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Preference number: 6 (lower is better) Translates to: VWCMTATFCCLPISS*TMSTLGGFVIVSLN Trigger: ATTCAGAGAAACGATCACAAAACCTCCCAAAGTTGACATGGTCAATGAAGAAATAGGCAGGCAGCAAAAAGTTGCTGTCATACACCAAAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS CCA 72 bp | GTCAACTTTGGGAGGTTTTGTGATCGTTTCTCTGAATaGAATAATGGGTTCAGATACACTGATGTGGATCTT | + |
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Preference number: 6 (lower is better) Translates to: VNFGRFCDRFSE*NNGFRYTDVDL Trigger: AAGATCCACATCAGTGTATCTGAACCCATTATTCCATTCAGAGAAACGATCACAAAACCTCCCAAAGTTGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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| CDS GCA 72 bp | TCTTCTTTTGTTTGGTGTATGACAGCAACTTTTTGCTaGCTGCCTATTTCTTCATTGACCATGTCAACTTTG | + |
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Preference number: 6 (lower is better) Translates to: SSFVWCMTATFC*LPISSLTMSTL Trigger: CAAAGTTGACATGGTCAATGAAGAAATAGGCAGGCAGCAAAAAGTTGCTGTCATACACCAAACAAAAGAAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000039881.4 ENSMUST00000179489.8 |
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