RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for EFHC2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025038

Ensembl transcript IDs: ENSMUST00000026014.8

Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp CAAGCCTCCATACACATTGAGAACTGCTCGATCTGTTATCTGACCTaGTTGGTAGATTCCAGGTGGGCCATACTTGGGAAGCTTACCCCG +
Preference number: 5 (lower is better)
Translates to: QASIHIENCSICYLT*LVDSRWAILGKLTP
Trigger: CGGGGTAAGCTTCCCAAGTATGGCCCACCTGGAATCTACCAACCAGGTCAGATAACAGATCGAGCAGTTCTCAATGTGTATGGAGGCTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026014.8
CDS TCA 90 bp GCAGATAGCCATCTGCTCGCCATTCTGACAAGCCTCCATACACATTaGGAACTGCTCGATCTGTTATCTGACCTGGTTGGTAGATTCCAG +
Preference number: 5 (lower is better)
Translates to: ADSHLLAILTSLHTH*ELLDLLSDLVGRFQ
Trigger: CTGGAATCTACCAACCAGGTCAGATAACAGATCGAGCAGTTCTCAATGTGTATGGAGGCTTGTCAGAATGGCGAGCAGATGGCTATCTGC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026014.8
CDS GCA 90 bp CCCACCCAAACGTCTTCACATTTCTCTTTAAGGTATGGCGGGGCTTaGAAATCCGGTGTTGGATTCATTCTCCAGTTCAGGACGGAGAAA +
Preference number: 5 (lower is better)
Translates to: PTQTSSHFSLRYGGA*KSGVGFILQFRTEK
Trigger: TTTCTCCGTCCTGAACTGGAGAATGAATCCAACACCGGATTTGCAAGCCCCGCCATACCTTAAAGAGAAATGTGAAGACGTTTGGGTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026014.8
CDS TCA 90 bp GCAGATCTCCACCTACTCCAGGCTTATTCTCACTCACCAGCATCCTaGCATTGTTGCAAAAGCCCCAATGTTGAGATTTATGGAACCTCT +
Preference number: 5 (lower is better)
Translates to: ADLHLLQAYSHSPAS*HCCKSPNVEIYGTS
Trigger: AGAGGTTCCATAAATCTCAACATTGGGGCTTTTGCAACAATGTCAGGATGCTGGTGAGTGAGAATAAGCCTGGAGTAGGTGGAGATCTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026014.8
CDS TCA 90 bp CATCCCACAAGCAGAAGAAACGCAAAACCTTCCCATCATACTGGATaGATCGTTTCAGGGTGTCAAAAGACTGATAGGGACGAAAGGGAT +
Preference number: 5 (lower is better)
Translates to: HPTSRRNAKPSHHTG*IVSGCQKTDRDERD
Trigger: ATCCCTTTCGTCCCTATCAGTCTTTTGACACCCTGAAACGATTCATCCAGTATGATGGGAAGGTTTTGCGTTTCTTCTGCTTGTGGGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026014.8
CDS TCA 90 bp TTCTCACTCACCAGCATCCTGACATTGTTGCAAAAGCCCCAATGTTaGGATTTATGGAACCTCTCCTTTCCTATATTGCGGTTAAAGCTG +
Preference number: 5 (lower is better)
Translates to: FSLTSILTLLQKPQC*DLWNLSFPILRLKL
Trigger: CAGCTTTAACCGCAATATAGGAAAGGAGAGGTTCCATAAATCTCAACATTGGGGCTTTTGCAACAATGTCAGGATGCTGGTGAGTGAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026014.8
CDS CCA 90 bp GTTCCATCTCCTTTGGGAAATACACTGTGTTTAGGCTTTATCTTTTaGCCATATAGCAGATCTCCACCTACTCCAGGCTTATTCTCACTC +
Preference number: 5 (lower is better)
Translates to: VPSPLGNTLCLGFIF*PYSRSPPTPGLFSL
Trigger: GAGTGAGAATAAGCCTGGAGTAGGTGGAGATCTGCTATATGGCCAAAAGATAAAGCCTAAACACAGTGTATTTCCCAAAGGAGATGGAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026014.8
CDS CCA 90 bp TTCACATTTCTCTTTAAGGTATGGCGGGGCTTGCAAATCCGGTGTTaGATTCATTCTCCAGTTCAGGACGGAGAAAAATATCTCATAATT +
Preference number: 5 (lower is better)
Translates to: FTFLFKVWRGLQIRC*IHSPVQDGEKYLII
Trigger: AATTATGAGATATTTTTCTCCGTCCTGAACTGGAGAATGAATCCAACACCGGATTTGCAAGCCCCGCCATACCTTAAAGAGAAATGTGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026014.8
CDS TCA 90 bp AGGTGGGTATTTCCTTTCTATCTTTGGAAGATGAGGAGGCTTGCATaGAATGGGCGTAAAGTTATCAACTCCATACTTTGTCCTATAATA +
Preference number: 5 (lower is better)
Translates to: RWVFPFYLWKMRRLA*NGRKVINSILCPII
Trigger: TATTATAGGACAAAGTATGGAGTTGATAACTTTACGCCCATTTCATGCAAGCCTCCTCATCTTCCAAAGATAGAAAGGAAATACCCACCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026014.8
CDS CAA 90 bp GCCTCCATACACATTGAGAACTGCTCGATCTGTTATCTGACCTGGTaGGTAGATTCCAGGTGGGCCATACTTGGGAAGCTTACCCCGCCG +
Preference number: 6 (lower is better)
Translates to: ASIHIENCSICYLTW*VDSRWAILGKLTPP
Trigger: CGGCGGGGTAAGCTTCCCAAGTATGGCCCACCTGGAATCTACCAACCAGGTCAGATAACAGATCGAGCAGTTCTCAATGTGTATGGAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026014.8
CDS CCA 72 bp TCGATCTGTTATCTGACCTGGTTGGTAGATTCCAGGTaGGCCATACTTGGGAAGCTTACCCCGCCGAAGGAA +
Preference number: 6 (lower is better)
Translates to: SICYLTWLVDSR*AILGKLTPPKE
Trigger: TTCCTTCGGCGGGGTAAGCTTCCCAAGTATGGCCCACCTGGAATCTACCAACCAGGTCAGATAACAGATCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026014.8
CDS GCA 72 bp GTCTGGATCCATAATCTCAGGCACACGGTAGTGGCGTaGAATGGTTATAAGCTCCTGGTCTATGAGCTTCCC +
Preference number: 6 (lower is better)
Translates to: VWIHNLRHTVVA*NGYKLLVYELP
Trigger: GGGAAGCTCATAGACCAGGAGCTTATAACCATTGCACGCCACTACCGTGTGCCTGAGATTATGGATCCAGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026014.8
CDS CAA 90 bp TCCCACCCAAACGTCTTCACATTTCTCTTTAAGGTATGGCGGGGCTaGCAAATCCGGTGTTGGATTCATTCTCCAGTTCAGGACGGAGAA +
Preference number: 6 (lower is better)
Translates to: SHPNVFTFLFKVWRG*QIRCWIHSPVQDGE
Trigger: TTCTCCGTCCTGAACTGGAGAATGAATCCAACACCGGATTTGCAAGCCCCGCCATACCTTAAAGAGAAATGTGAAGACGTTTGGGTGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026014.8
CDS TCA 72 bp CATCTGCTCGCCATTCTGACAAGCCTCCATACACATTaGGAACTGCTCGATCTGTTATCTGACCTGGTTGGT +
Preference number: 6 (lower is better)
Translates to: HLLAILTSLHTH*ELLDLLSDLVG
Trigger: ACCAACCAGGTCAGATAACAGATCGAGCAGTTCTCAATGTGTATGGAGGCTTGTCAGAATGGCGAGCAGATG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026014.8
CDS CAA 72 bp CACATTGAGAACTGCTCGATCTGTTATCTGACCTGGTaGGTAGATTCCAGGTGGGCCATACTTGGGAAGCTT +
Preference number: 6 (lower is better)
Translates to: HIENCSICYLTW*VDSRWAILGKL
Trigger: AAGCTTCCCAAGTATGGCCCACCTGGAATCTACCAACCAGGTCAGATAACAGATCGAGCAGTTCTCAATGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026014.8
CDS TCA 72 bp GTATTTATCCAGCAGATAGCCATCTGCTCGCCATTCTaGCAAGCCTCCATACACATTGAGAACTGCTCGATC +
Preference number: 6 (lower is better)
Translates to: VFIQQIAICSPF*QASIHIENCSI
Trigger: GATCGAGCAGTTCTCAATGTGTATGGAGGCTTGTCAGAATGGCGAGCAGATGGCTATCTGCTGGATAAATAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026014.8
CDS GCA 72 bp ACGTCTTCACATTTCTCTTTAAGGTATGGCGGGGCTTaGAAATCCGGTGTTGGATTCATTCTCCAGTTCAGG +
Preference number: 6 (lower is better)
Translates to: TSSHFSLRYGGA*KSGVGFILQFR
Trigger: CCTGAACTGGAGAATGAATCCAACACCGGATTTGCAAGCCCCGCCATACCTTAAAGAGAAATGTGAAGACGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026014.8
CDS CCA 72 bp ATACACATTGAGAACTGCTCGATCTGTTATCTGACCTaGTTGGTAGATTCCAGGTGGGCCATACTTGGGAAG +
Preference number: 6 (lower is better)
Translates to: IHIENCSICYLT*LVDSRWAILGK
Trigger: CTTCCCAAGTATGGCCCACCTGGAATCTACCAACCAGGTCAGATAACAGATCGAGCAGTTCTCAATGTGTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026014.8
CDS CAA 72 bp GGGGTAAGGAATCCGTTGACGCCTGATAGAAGTGCCTaGAGGCAGTCCACTATTTATCACTTCTGGTTCATT +
Preference number: 6 (lower is better)
Translates to: GVRNPLTPDRSA*RQSTIYHFWFI
Trigger: AATGAACCAGAAGTGATAAATAGTGGACTGCCTCAAGGCACTTCTATCAGGCGTCAACGGATTCCTTACCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026014.8
CDS CCA 72 bp CTCTTTAAGGTATGGCGGGGCTTGCAAATCCGGTGTTaGATTCATTCTCCAGTTCAGGACGGAGAAAAATAT +
Preference number: 6 (lower is better)
Translates to: LFKVWRGLQIRC*IHSPVQDGEKY
Trigger: ATATTTTTCTCCGTCCTGAACTGGAGAATGAATCCAACACCGGATTTGCAAGCCCCGCCATACCTTAAAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026014.8
CDS CAA 72 bp AACGTCTTCACATTTCTCTTTAAGGTATGGCGGGGCTaGCAAATCCGGTGTTGGATTCATTCTCCAGTTCAG +
Preference number: 6 (lower is better)
Translates to: NVFTFLFKVWRG*QIRCWIHSPVQ
Trigger: CTGAACTGGAGAATGAATCCAACACCGGATTTGCAAGCCCCGCCATACCTTAAAGAGAAATGTGAAGACGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026014.8
CDS TCA 72 bp ACCAGCATCCTGACATTGTTGCAAAAGCCCCAATGTTaGGATTTATGGAACCTCTCCTTTCCTATATTGCGG +
Preference number: 6 (lower is better)
Translates to: TSILTLLQKPQC*DLWNLSFPILR
Trigger: CCGCAATATAGGAAAGGAGAGGTTCCATAAATCTCAACATTGGGGCTTTTGCAACAATGTCAGGATGCTGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026014.8
CDS TCA 72 bp AGCAGAAGAAACGCAAAACCTTCCCATCATACTGGATaGATCGTTTCAGGGTGTCAAAAGACTGATAGGGAC +
Preference number: 6 (lower is better)
Translates to: SRRNAKPSHHTG*IVSGCQKTDRD
Trigger: GTCCCTATCAGTCTTTTGACACCCTGAAACGATTCATCCAGTATGATGGGAAGGTTTTGCGTTTCTTCTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026014.8
CDS CAA 72 bp CACCAGCATCCTGACATTGTTGCAAAAGCCCCAATGTaGAGATTTATGGAACCTCTCCTTTCCTATATTGCG +
Preference number: 6 (lower is better)
Translates to: HQHPDIVAKAPM*RFMEPLLSYIA
Trigger: CGCAATATAGGAAAGGAGAGGTTCCATAAATCTCAACATTGGGGCTTTTGCAACAATGTCAGGATGCTGGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026014.8
CDS CAA 72 bp AAAGCAACCCAGGATGGTGCATCGGTTCCATCTCCTTaGGGAAATACACTGTGTTTAGGCTTTATCTTTTGG +
Preference number: 6 (lower is better)
Translates to: KATQDGASVPSP*GNTLCLGFIFW
Trigger: CCAAAAGATAAAGCCTAAACACAGTGTATTTCCCAAAGGAGATGGAACCGATGCACCATCCTGGGTTGCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026014.8
CDS CAA 90 bp TGCTTATCAAAAGCAACCCAGGATGGTGCATCGGTTCCATCTCCTTaGGGAAATACACTGTGTTTAGGCTTTATCTTTTGGCCATATAGC +
Preference number: 6 (lower is better)
Translates to: CLSKATQDGASVPSP*GNTLCLGFIFWPYS
Trigger: GCTATATGGCCAAAAGATAAAGCCTAAACACAGTGTATTTCCCAAAGGAGATGGAACCGATGCACCATCCTGGGTTGCTTTTGATAAGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026014.8
CDS CCA 72 bp GAAAGAATCCTCTTCAGACCCAAAGCCAGTATAAGGTaGGTATTTCCTTTCTATCTTTGGAAGATGAGGAGG +
Preference number: 6 (lower is better)
Translates to: ERILFRPKASIR*VFPFYLWKMRR
Trigger: CCTCCTCATCTTCCAAAGATAGAAAGGAAATACCCACCTTATACTGGCTTTGGGTCTGAAGAGGATTCTTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026014.8
CDS CAA 90 bp ATTCTCACTCACCAGCATCCTGACATTGTTGCAAAAGCCCCAATGTaGAGATTTATGGAACCTCTCCTTTCCTATATTGCGGTTAAAGCT +
Preference number: 6 (lower is better)
Translates to: ILTHQHPDIVAKAPM*RFMEPLLSYIAVKA
Trigger: AGCTTTAACCGCAATATAGGAAAGGAGAGGTTCCATAAATCTCAACATTGGGGCTTTTGCAACAATGTCAGGATGCTGGTGAGTGAGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026014.8
CDS CCA 72 bp CCGCATCTTCATGTAGGGATCGAGTGGACATTGTCCTaGAGGGTTCAATTTGATTCCTATTTTCTTCAAAAA +
Preference number: 6 (lower is better)
Translates to: PHLHVGIEWTLS*RVQFDSYFLQK
Trigger: TTTTTGAAGAAAATAGGAATCAAATTGAACCCTCCAGGACAATGTCCACTCGATCCCTACATGAAGATGCGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026014.8
CDS TCA 72 bp TTTCCTTTCTATCTTTGGAAGATGAGGAGGCTTGCATaGAATGGGCGTAAAGTTATCAACTCCATACTTTGT +
Preference number: 6 (lower is better)
Translates to: FPFYLWKMRRLA*NGRKVINSILC
Trigger: ACAAAGTATGGAGTTGATAACTTTACGCCCATTTCATGCAAGCCTCCTCATCTTCCAAAGATAGAAAGGAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026014.8
CDS CAA 90 bp AGTGCCTTGAGGCAGTCCACTATTTATCACTTCTGGTTCATTTACTaGAATGGTGTCATCTTCAAGGTAGAAATAGATTTTGTAGTATCT +
Preference number: 6 (lower is better)
Translates to: SALRQSTIYHFWFIY*NGVIFKVEIDFVVS
Trigger: AGATACTACAAAATCTATTTCTACCTTGAAGATGACACCATTCAAGTAAATGAACCAGAAGTGATAAATAGTGGACTGCCTCAAGGCACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026014.8
CDS GCA 72 bp TTTCCTGCTTCAGTTTTTGTATGGCAAGTTCAAAGTTaGTATATGGAAACTTGTCTGTGTTATTCTCCATGT +
Preference number: 6 (lower is better)
Translates to: FPASVFVWQVQS*YMETCLCYSPC
Trigger: ACATGGAGAATAACACAGACAAGTTTCCATATAGCAACTTTGAACTTGCCATACAAAAACTGAAGCAGGAAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026014.8
CDS CCA 72 bp TCTCATAATTTATTTGATGGTCTTTGTCTTCAAACCTaGACAGTAAGCAATCTAGAAAGTCATCATCCAGAG +
Preference number: 6 (lower is better)
Translates to: SHNLFDGLCLQT*TVSNLESHHPE
Trigger: CTCTGGATGATGACTTTCTAGATTGCTTACTGTCCAGGTTTGAAGACAAAGACCATCAAATAAATTATGAGA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026014.8
CDS CAA 72 bp AATGCAATGACAAAGATCCTGTCCACATCAGCGCATTaGTGTGTAATTAGTTTTCCAAAATATCGGAGTATA +
Preference number: 6 (lower is better)
Translates to: NAMTKILSTSAH*CVISFPKYRSI
Trigger: TATACTCCGATATTTTGGAAAACTAATTACACACAAATGCGCTGATGTGGACAGGATCTTTGTCATTGCATT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026014.8
CDS CAA 72 bp TTTTCCTGCTTCAGTTTTTGTATGGCAAGTTCAAAGTaGCTATATGGAAACTTGTCTGTGTTATTCTCCATG +
Preference number: 6 (lower is better)
Translates to: FSCFSFCMASSK*LYGNLSVLFSM
Trigger: CATGGAGAATAACACAGACAAGTTTCCATATAGCAACTTTGAACTTGCCATACAAAAACTGAAGCAGGAAAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026014.8