Pregenerated sensors for EFHC2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025038Ensembl transcript IDs: ENSMUST00000026014.8
Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS CCA 90 bp | CAAGCCTCCATACACATTGAGAACTGCTCGATCTGTTATCTGACCTaGTTGGTAGATTCCAGGTGGGCCATACTTGGGAAGCTTACCCCG | + |
Preference number: 5 (lower is better) Translates to: QASIHIENCSICYLT*LVDSRWAILGKLTP Trigger: CGGGGTAAGCTTCCCAAGTATGGCCCACCTGGAATCTACCAACCAGGTCAGATAACAGATCGAGCAGTTCTCAATGTGTATGGAGGCTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026014.8 |
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CDS TCA 90 bp | GCAGATAGCCATCTGCTCGCCATTCTGACAAGCCTCCATACACATTaGGAACTGCTCGATCTGTTATCTGACCTGGTTGGTAGATTCCAG | + |
Preference number: 5 (lower is better) Translates to: ADSHLLAILTSLHTH*ELLDLLSDLVGRFQ Trigger: CTGGAATCTACCAACCAGGTCAGATAACAGATCGAGCAGTTCTCAATGTGTATGGAGGCTTGTCAGAATGGCGAGCAGATGGCTATCTGC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026014.8 |
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CDS GCA 90 bp | CCCACCCAAACGTCTTCACATTTCTCTTTAAGGTATGGCGGGGCTTaGAAATCCGGTGTTGGATTCATTCTCCAGTTCAGGACGGAGAAA | + |
Preference number: 5 (lower is better) Translates to: PTQTSSHFSLRYGGA*KSGVGFILQFRTEK Trigger: TTTCTCCGTCCTGAACTGGAGAATGAATCCAACACCGGATTTGCAAGCCCCGCCATACCTTAAAGAGAAATGTGAAGACGTTTGGGTGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026014.8 |
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CDS TCA 90 bp | GCAGATCTCCACCTACTCCAGGCTTATTCTCACTCACCAGCATCCTaGCATTGTTGCAAAAGCCCCAATGTTGAGATTTATGGAACCTCT | + |
Preference number: 5 (lower is better) Translates to: ADLHLLQAYSHSPAS*HCCKSPNVEIYGTS Trigger: AGAGGTTCCATAAATCTCAACATTGGGGCTTTTGCAACAATGTCAGGATGCTGGTGAGTGAGAATAAGCCTGGAGTAGGTGGAGATCTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026014.8 |
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CDS TCA 90 bp | CATCCCACAAGCAGAAGAAACGCAAAACCTTCCCATCATACTGGATaGATCGTTTCAGGGTGTCAAAAGACTGATAGGGACGAAAGGGAT | + |
Preference number: 5 (lower is better) Translates to: HPTSRRNAKPSHHTG*IVSGCQKTDRDERD Trigger: ATCCCTTTCGTCCCTATCAGTCTTTTGACACCCTGAAACGATTCATCCAGTATGATGGGAAGGTTTTGCGTTTCTTCTGCTTGTGGGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026014.8 |
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CDS TCA 90 bp | TTCTCACTCACCAGCATCCTGACATTGTTGCAAAAGCCCCAATGTTaGGATTTATGGAACCTCTCCTTTCCTATATTGCGGTTAAAGCTG | + |
Preference number: 5 (lower is better) Translates to: FSLTSILTLLQKPQC*DLWNLSFPILRLKL Trigger: CAGCTTTAACCGCAATATAGGAAAGGAGAGGTTCCATAAATCTCAACATTGGGGCTTTTGCAACAATGTCAGGATGCTGGTGAGTGAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026014.8 |
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CDS CCA 90 bp | GTTCCATCTCCTTTGGGAAATACACTGTGTTTAGGCTTTATCTTTTaGCCATATAGCAGATCTCCACCTACTCCAGGCTTATTCTCACTC | + |
Preference number: 5 (lower is better) Translates to: VPSPLGNTLCLGFIF*PYSRSPPTPGLFSL Trigger: GAGTGAGAATAAGCCTGGAGTAGGTGGAGATCTGCTATATGGCCAAAAGATAAAGCCTAAACACAGTGTATTTCCCAAAGGAGATGGAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026014.8 |
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CDS CCA 90 bp | TTCACATTTCTCTTTAAGGTATGGCGGGGCTTGCAAATCCGGTGTTaGATTCATTCTCCAGTTCAGGACGGAGAAAAATATCTCATAATT | + |
Preference number: 5 (lower is better) Translates to: FTFLFKVWRGLQIRC*IHSPVQDGEKYLII Trigger: AATTATGAGATATTTTTCTCCGTCCTGAACTGGAGAATGAATCCAACACCGGATTTGCAAGCCCCGCCATACCTTAAAGAGAAATGTGAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026014.8 |
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CDS TCA 90 bp | AGGTGGGTATTTCCTTTCTATCTTTGGAAGATGAGGAGGCTTGCATaGAATGGGCGTAAAGTTATCAACTCCATACTTTGTCCTATAATA | + |
Preference number: 5 (lower is better) Translates to: RWVFPFYLWKMRRLA*NGRKVINSILCPII Trigger: TATTATAGGACAAAGTATGGAGTTGATAACTTTACGCCCATTTCATGCAAGCCTCCTCATCTTCCAAAGATAGAAAGGAAATACCCACCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026014.8 |
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CDS CAA 90 bp | GCCTCCATACACATTGAGAACTGCTCGATCTGTTATCTGACCTGGTaGGTAGATTCCAGGTGGGCCATACTTGGGAAGCTTACCCCGCCG | + |
Preference number: 6 (lower is better) Translates to: ASIHIENCSICYLTW*VDSRWAILGKLTPP Trigger: CGGCGGGGTAAGCTTCCCAAGTATGGCCCACCTGGAATCTACCAACCAGGTCAGATAACAGATCGAGCAGTTCTCAATGTGTATGGAGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026014.8 |
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CDS CCA 72 bp | TCGATCTGTTATCTGACCTGGTTGGTAGATTCCAGGTaGGCCATACTTGGGAAGCTTACCCCGCCGAAGGAA | + |
Preference number: 6 (lower is better) Translates to: SICYLTWLVDSR*AILGKLTPPKE Trigger: TTCCTTCGGCGGGGTAAGCTTCCCAAGTATGGCCCACCTGGAATCTACCAACCAGGTCAGATAACAGATCGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026014.8 |
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CDS GCA 72 bp | GTCTGGATCCATAATCTCAGGCACACGGTAGTGGCGTaGAATGGTTATAAGCTCCTGGTCTATGAGCTTCCC | + |
Preference number: 6 (lower is better) Translates to: VWIHNLRHTVVA*NGYKLLVYELP Trigger: GGGAAGCTCATAGACCAGGAGCTTATAACCATTGCACGCCACTACCGTGTGCCTGAGATTATGGATCCAGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026014.8 |
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CDS CAA 90 bp | TCCCACCCAAACGTCTTCACATTTCTCTTTAAGGTATGGCGGGGCTaGCAAATCCGGTGTTGGATTCATTCTCCAGTTCAGGACGGAGAA | + |
Preference number: 6 (lower is better) Translates to: SHPNVFTFLFKVWRG*QIRCWIHSPVQDGE Trigger: TTCTCCGTCCTGAACTGGAGAATGAATCCAACACCGGATTTGCAAGCCCCGCCATACCTTAAAGAGAAATGTGAAGACGTTTGGGTGGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026014.8 |
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CDS TCA 72 bp | CATCTGCTCGCCATTCTGACAAGCCTCCATACACATTaGGAACTGCTCGATCTGTTATCTGACCTGGTTGGT | + |
Preference number: 6 (lower is better) Translates to: HLLAILTSLHTH*ELLDLLSDLVG Trigger: ACCAACCAGGTCAGATAACAGATCGAGCAGTTCTCAATGTGTATGGAGGCTTGTCAGAATGGCGAGCAGATG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026014.8 |
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CDS CAA 72 bp | CACATTGAGAACTGCTCGATCTGTTATCTGACCTGGTaGGTAGATTCCAGGTGGGCCATACTTGGGAAGCTT | + |
Preference number: 6 (lower is better) Translates to: HIENCSICYLTW*VDSRWAILGKL Trigger: AAGCTTCCCAAGTATGGCCCACCTGGAATCTACCAACCAGGTCAGATAACAGATCGAGCAGTTCTCAATGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026014.8 |
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CDS TCA 72 bp | GTATTTATCCAGCAGATAGCCATCTGCTCGCCATTCTaGCAAGCCTCCATACACATTGAGAACTGCTCGATC | + |
Preference number: 6 (lower is better) Translates to: VFIQQIAICSPF*QASIHIENCSI Trigger: GATCGAGCAGTTCTCAATGTGTATGGAGGCTTGTCAGAATGGCGAGCAGATGGCTATCTGCTGGATAAATAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026014.8 |
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CDS GCA 72 bp | ACGTCTTCACATTTCTCTTTAAGGTATGGCGGGGCTTaGAAATCCGGTGTTGGATTCATTCTCCAGTTCAGG | + |
Preference number: 6 (lower is better) Translates to: TSSHFSLRYGGA*KSGVGFILQFR Trigger: CCTGAACTGGAGAATGAATCCAACACCGGATTTGCAAGCCCCGCCATACCTTAAAGAGAAATGTGAAGACGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026014.8 |
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CDS CCA 72 bp | ATACACATTGAGAACTGCTCGATCTGTTATCTGACCTaGTTGGTAGATTCCAGGTGGGCCATACTTGGGAAG | + |
Preference number: 6 (lower is better) Translates to: IHIENCSICYLT*LVDSRWAILGK Trigger: CTTCCCAAGTATGGCCCACCTGGAATCTACCAACCAGGTCAGATAACAGATCGAGCAGTTCTCAATGTGTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026014.8 |
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CDS CAA 72 bp | GGGGTAAGGAATCCGTTGACGCCTGATAGAAGTGCCTaGAGGCAGTCCACTATTTATCACTTCTGGTTCATT | + |
Preference number: 6 (lower is better) Translates to: GVRNPLTPDRSA*RQSTIYHFWFI Trigger: AATGAACCAGAAGTGATAAATAGTGGACTGCCTCAAGGCACTTCTATCAGGCGTCAACGGATTCCTTACCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026014.8 |
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CDS CCA 72 bp | CTCTTTAAGGTATGGCGGGGCTTGCAAATCCGGTGTTaGATTCATTCTCCAGTTCAGGACGGAGAAAAATAT | + |
Preference number: 6 (lower is better) Translates to: LFKVWRGLQIRC*IHSPVQDGEKY Trigger: ATATTTTTCTCCGTCCTGAACTGGAGAATGAATCCAACACCGGATTTGCAAGCCCCGCCATACCTTAAAGAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026014.8 |
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CDS CAA 72 bp | AACGTCTTCACATTTCTCTTTAAGGTATGGCGGGGCTaGCAAATCCGGTGTTGGATTCATTCTCCAGTTCAG | + |
Preference number: 6 (lower is better) Translates to: NVFTFLFKVWRG*QIRCWIHSPVQ Trigger: CTGAACTGGAGAATGAATCCAACACCGGATTTGCAAGCCCCGCCATACCTTAAAGAGAAATGTGAAGACGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026014.8 |
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CDS TCA 72 bp | ACCAGCATCCTGACATTGTTGCAAAAGCCCCAATGTTaGGATTTATGGAACCTCTCCTTTCCTATATTGCGG | + |
Preference number: 6 (lower is better) Translates to: TSILTLLQKPQC*DLWNLSFPILR Trigger: CCGCAATATAGGAAAGGAGAGGTTCCATAAATCTCAACATTGGGGCTTTTGCAACAATGTCAGGATGCTGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026014.8 |
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CDS TCA 72 bp | AGCAGAAGAAACGCAAAACCTTCCCATCATACTGGATaGATCGTTTCAGGGTGTCAAAAGACTGATAGGGAC | + |
Preference number: 6 (lower is better) Translates to: SRRNAKPSHHTG*IVSGCQKTDRD Trigger: GTCCCTATCAGTCTTTTGACACCCTGAAACGATTCATCCAGTATGATGGGAAGGTTTTGCGTTTCTTCTGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026014.8 |
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CDS CAA 72 bp | CACCAGCATCCTGACATTGTTGCAAAAGCCCCAATGTaGAGATTTATGGAACCTCTCCTTTCCTATATTGCG | + |
Preference number: 6 (lower is better) Translates to: HQHPDIVAKAPM*RFMEPLLSYIA Trigger: CGCAATATAGGAAAGGAGAGGTTCCATAAATCTCAACATTGGGGCTTTTGCAACAATGTCAGGATGCTGGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026014.8 |
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CDS CAA 72 bp | AAAGCAACCCAGGATGGTGCATCGGTTCCATCTCCTTaGGGAAATACACTGTGTTTAGGCTTTATCTTTTGG | + |
Preference number: 6 (lower is better) Translates to: KATQDGASVPSP*GNTLCLGFIFW Trigger: CCAAAAGATAAAGCCTAAACACAGTGTATTTCCCAAAGGAGATGGAACCGATGCACCATCCTGGGTTGCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026014.8 |
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CDS CAA 90 bp | TGCTTATCAAAAGCAACCCAGGATGGTGCATCGGTTCCATCTCCTTaGGGAAATACACTGTGTTTAGGCTTTATCTTTTGGCCATATAGC | + |
Preference number: 6 (lower is better) Translates to: CLSKATQDGASVPSP*GNTLCLGFIFWPYS Trigger: GCTATATGGCCAAAAGATAAAGCCTAAACACAGTGTATTTCCCAAAGGAGATGGAACCGATGCACCATCCTGGGTTGCTTTTGATAAGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026014.8 |
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CDS CCA 72 bp | GAAAGAATCCTCTTCAGACCCAAAGCCAGTATAAGGTaGGTATTTCCTTTCTATCTTTGGAAGATGAGGAGG | + |
Preference number: 6 (lower is better) Translates to: ERILFRPKASIR*VFPFYLWKMRR Trigger: CCTCCTCATCTTCCAAAGATAGAAAGGAAATACCCACCTTATACTGGCTTTGGGTCTGAAGAGGATTCTTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026014.8 |
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CDS CAA 90 bp | ATTCTCACTCACCAGCATCCTGACATTGTTGCAAAAGCCCCAATGTaGAGATTTATGGAACCTCTCCTTTCCTATATTGCGGTTAAAGCT | + |
Preference number: 6 (lower is better) Translates to: ILTHQHPDIVAKAPM*RFMEPLLSYIAVKA Trigger: AGCTTTAACCGCAATATAGGAAAGGAGAGGTTCCATAAATCTCAACATTGGGGCTTTTGCAACAATGTCAGGATGCTGGTGAGTGAGAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026014.8 |
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CDS CCA 72 bp | CCGCATCTTCATGTAGGGATCGAGTGGACATTGTCCTaGAGGGTTCAATTTGATTCCTATTTTCTTCAAAAA | + |
Preference number: 6 (lower is better) Translates to: PHLHVGIEWTLS*RVQFDSYFLQK Trigger: TTTTTGAAGAAAATAGGAATCAAATTGAACCCTCCAGGACAATGTCCACTCGATCCCTACATGAAGATGCGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026014.8 |
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CDS TCA 72 bp | TTTCCTTTCTATCTTTGGAAGATGAGGAGGCTTGCATaGAATGGGCGTAAAGTTATCAACTCCATACTTTGT | + |
Preference number: 6 (lower is better) Translates to: FPFYLWKMRRLA*NGRKVINSILC Trigger: ACAAAGTATGGAGTTGATAACTTTACGCCCATTTCATGCAAGCCTCCTCATCTTCCAAAGATAGAAAGGAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026014.8 |
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CDS CAA 90 bp | AGTGCCTTGAGGCAGTCCACTATTTATCACTTCTGGTTCATTTACTaGAATGGTGTCATCTTCAAGGTAGAAATAGATTTTGTAGTATCT | + |
Preference number: 6 (lower is better) Translates to: SALRQSTIYHFWFIY*NGVIFKVEIDFVVS Trigger: AGATACTACAAAATCTATTTCTACCTTGAAGATGACACCATTCAAGTAAATGAACCAGAAGTGATAAATAGTGGACTGCCTCAAGGCACT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026014.8 |
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CDS GCA 72 bp | TTTCCTGCTTCAGTTTTTGTATGGCAAGTTCAAAGTTaGTATATGGAAACTTGTCTGTGTTATTCTCCATGT | + |
Preference number: 6 (lower is better) Translates to: FPASVFVWQVQS*YMETCLCYSPC Trigger: ACATGGAGAATAACACAGACAAGTTTCCATATAGCAACTTTGAACTTGCCATACAAAAACTGAAGCAGGAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026014.8 |
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CDS CCA 72 bp | TCTCATAATTTATTTGATGGTCTTTGTCTTCAAACCTaGACAGTAAGCAATCTAGAAAGTCATCATCCAGAG | + |
Preference number: 6 (lower is better) Translates to: SHNLFDGLCLQT*TVSNLESHHPE Trigger: CTCTGGATGATGACTTTCTAGATTGCTTACTGTCCAGGTTTGAAGACAAAGACCATCAAATAAATTATGAGA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026014.8 |
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CDS CAA 72 bp | AATGCAATGACAAAGATCCTGTCCACATCAGCGCATTaGTGTGTAATTAGTTTTCCAAAATATCGGAGTATA | + |
Preference number: 6 (lower is better) Translates to: NAMTKILSTSAH*CVISFPKYRSI Trigger: TATACTCCGATATTTTGGAAAACTAATTACACACAAATGCGCTGATGTGGACAGGATCTTTGTCATTGCATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026014.8 |
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CDS CAA 72 bp | TTTTCCTGCTTCAGTTTTTGTATGGCAAGTTCAAAGTaGCTATATGGAAACTTGTCTGTGTTATTCTCCATG | + |
Preference number: 6 (lower is better) Translates to: FSCFSFCMASSK*LYGNLSVLFSM Trigger: CATGGAGAATAACACAGACAAGTTTCCATATAGCAACTTTGAACTTGCCATACAAAAACTGAAGCAGGAAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026014.8 |