RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for EFHC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041809

Ensembl transcript IDs: ENSMUST00000038447.6

Found 96 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGTGAAATAGAAGAGTGGGAAAAGAAATACCACTTCCGGAGTTATTaGAAGGCTTGGGTGGTAGATTTCTCAATGTCGGCTCAGTGTCAA +
Preference number: 1 (lower is better)
Translates to: SEIEEWEKKYHFRSY*KAWVVDFSMSAQCQ
Trigger: TTGACACTGAGCCGACATTGAGAAATCTACCACCCAAGCCTTTCAATAACTCCGGAAGTGGTATTTCTTTTCCCACTCTTCTATTTCACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR TCA 90 bp GGTGGTAGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTCTCTCGGCCAGGGCTTCTGGTaGATACTGGGAAGCGTTGCT +
Preference number: 4 (lower is better)
Translates to: GGRFLNVGSVSKMLSHSLGQGFW*ILGSVA
Trigger: AGCAACGCTTCCCAGTATTCACCAGAAGCCCTGGCC...GAGAGAATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCTACCACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR TCA 90 bp GGTGGTAGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTCTCTCAGCCGTTCCTGTAGTTaGGTGTCTGGCTTCGGTGGA +
Preference number: 4 (lower is better)
Translates to: GGRFLNVGSVSKMLSHSLSRSCS*VSGFGG
Trigger: TCCACCGAAGCCAGACACTCAACTACAGGAACGGCT...GAGAGAATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCTACCACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR TCA 90 bp GTAGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTCTCTCGTTCGCGGCTTCCCCACAATaGAGTCCTTGGCAGTGTACC +
Preference number: 4 (lower is better)
Translates to: VDFSMSAQCQKCCRILSFAASPQ*SPWQCT
Trigger: GGTACACTGCCAAGGACTTCATTGTGGGGAAGCCGC...GAACGAGAGAATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR CCA 90 bp GGCTTGGGTGGTAGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATAGATGGGTGCCTTATTaGCCAGTTCATCCAGCTCGG +
Preference number: 4 (lower is better)
Translates to: GLGGRFLNVGSVSKMLSHRWVPY*PVHPAR
Trigger: CCGAGCTGGATGAACTGGCCAATAAGGCACCCATCT...ATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCTACCACCCAAGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR TCA 90 bp AGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTCTCTCGTTCAGGTTCGTGGACCTCTCTaGTCTCCACGGTGTCATCCA +
Preference number: 4 (lower is better)
Translates to: RFLNVGSVSKMLSHSLVQVRGPL*SPRCHP
Trigger: TGGATGACACCGTGGAGATCAGAGAGGTCCACGAAC...CTGAACGAGAGAATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR GCA 90 bp GGTAGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTCTCTCGTTGGGACGTCGGACAACTaGATAGCCGTTCCTGTAGTT +
Preference number: 4 (lower is better)
Translates to: GRFLNVGSVSKMLSHSLVGTSDN*IAVPVV
Trigger: AACTACAGGAACGGCTATGCAGTTGTCCGACGTCCC...AACGAGAGAATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCTACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR GCA 90 bp GGTAGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTCTCTCGTTCGCAGGAACAAACTCTaGAAGTGGGGCTTGCTTGAG +
Preference number: 4 (lower is better)
Translates to: GRFLNVGSVSKMLSHSLVRRNKL*KWGLLE
Trigger: CTCAAGCAAGCCCCACTTGCAGAGTTTGTTCCTGCG...AACGAGAGAATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCTACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR CCA 90 bp GGTAGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTCTCTCGTTCCGTGTCGTCCCAGATaGCATAGAATCGAAGGACCT +
Preference number: 4 (lower is better)
Translates to: GRFLNVGSVSKMLSHSLVPCRPR*HRIEGP
Trigger: AGGTCCTTCGATTCTATGCCATCTGGGACGACACGG...AACGAGAGAATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCTACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR CCA 90 bp GTAGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTCTCTCGTTCCCAAGTCCTGCACCTTaGATTCCTCTGTACCCTGCA +
Preference number: 4 (lower is better)
Translates to: VDFSMSAQCQKCCRILSFPSPAP*IPLYPA
Trigger: TGCAGGGTACAGAGGAATCCAAGGTGCAGGACTTGG...GAACGAGAGAATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR GCA 90 bp GGCTTGGGTGGTAGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTTGTCAAAAGCCACATaGGCAGGAACAAACTCTGCA +
Preference number: 4 (lower is better)
Translates to: GLGGRFLNVGSVSKMLSHLSKAT*AGTNSA
Trigger: TGCAGAGTTTGTTCCTGCGCATGTGGCTTTTGACAA...ATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCTACCACCCAAGCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR GCA 90 bp AGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTCTCTCGTTCAGGATTCCTCTGTACCCTaGACCATGGGTTCTCCTGTA +
Preference number: 4 (lower is better)
Translates to: RFLNVGSVSKMLSHSLVQDSSVP*TMGSPV
Trigger: TACAGGAGAACCCATGGTGCAGGGTACAGAGGAATC...CTGAACGAGAGAATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR CCA 90 bp GGTGGTAGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTCTCTCCAACTCCTGTTTTACTaGAGGTGGCTCCTTCTTGGT +
Preference number: 4 (lower is better)
Translates to: GGRFLNVGSVSKMLSHSLQLLFY*RWLLLG
Trigger: ACCAAGAAGGAGCCACCTCCAGTAAAACAGGAGTTG...GAGAGAATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCTACCACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR CCA 90 bp GTAGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTCTCTCGTTCGCTTCTGGTGAATACTaGGAAGCGTTGCTCTCCATG +
Preference number: 4 (lower is better)
Translates to: VDFSMSAQCQKCCRILSFASGEY*EALLSM
Trigger: CATGGAGAGCAACGCTTCCCAGTATTCACCAGAAGC...GAACGAGAGAATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCTAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR TCA 90 bp GTAGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTCTCTCGTTCGAAGAAGTCACTTGGTaGGTAGTAGATGGGGTTGTC +
Preference number: 4 (lower is better)
Translates to: VDFSMSAQCQKCCRILSFEEVTW*VVDGVV
Trigger: GACAACCCCATCTACTACTCACCAAGTGACTTCTTC...GAACGAGAGAATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCTAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR GCA 90 bp TTGAGTAATAGTGAAATAGAAGAGTGGGAAAAGAAATACCACTTCCGGAGTTATGCTTTCCAGTTCTGGTaGGGGAAGCTCCGGCTTCTG +
Preference number: 4 (lower is better)
Translates to: LSNSEIEEWEKKYHFRSYAFQFW*GKLRLL
Trigger: CAGAAGCCGGAGCTTCCCGCACCAGAACTGGAAAGC...ATAACTCCGGAAGTGGTATTTCTTTTCCCACTCTTCTATTTCACTATTACTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR GCA 90 bp GTAGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTCTCTCGTTCGGTTCTCCTGTAGCTTaGTTGCTTTCCAGTTCTGGT +
Preference number: 4 (lower is better)
Translates to: VDFSMSAQCQKCCRILSFGSPVA*LLSSSG
Trigger: ACCAGAACTGGAAAGCAAGCAAGCTACAGGAGAACC...GAACGAGAGAATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCTAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR CCA 90 bp GGTAGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTCTCTCGTTTCTCCACCAAAACTTTaGGCATACGCTGTCGGTTCA +
Preference number: 4 (lower is better)
Translates to: GRFLNVGSVSKMLSHSLVSPPKL*AYAVGS
Trigger: TGAACCGACAGCGTATGCCCAAAGTTTTGGTGGAGA...AACGAGAGAATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCTACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR CCA 90 bp GGTAGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTCTCTCGTTCTGTTTTACTGGAGGTaGCTCCTTCTTGGTCACATC +
Preference number: 4 (lower is better)
Translates to: GRFLNVGSVSKMLSHSLVLFYWR*LLLGHI
Trigger: GATGTGACCAAGAAGGAGCCACCTCCAGTAAAACAG...AACGAGAGAATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCTACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR TCA 90 bp AGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTCTCTCGTTCAGGTGGCTCAAAGATACTaGTCATATCCGTGGCAAGAA +
Preference number: 4 (lower is better)
Translates to: RFLNVGSVSKMLSHSLVQVAQRY*SYPWQE
Trigger: TTCTTGCCACGGATATGATCAGTATCTTTGAGCCAC...CTGAACGAGAGAATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR CCA 90 bp GTAGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTCTCTCGTTCGAACTGTCGTGTGAATaGGTCACAGTCGTAGATGAA +
Preference number: 4 (lower is better)
Translates to: VDFSMSAQCQKCCRILSFELSCE*VTVVDE
Trigger: TTCATCTACGACTGTGACCCATTCACACGACAGTTC...GAACGAGAGAATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCTAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR CCA 90 bp AGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTCTCTCGTTCAGTTGGTGAGTAGTAGATaGGGTTGTCAACTGGAGAGA +
Preference number: 4 (lower is better)
Translates to: RFLNVGSVSKMLSHSLVQLVSSR*GCQLER
Trigger: TCTCTCCAGTTGACAACCCCATCTACTACTCACCAA...CTGAACGAGAGAATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR TCA 90 bp TTGAGTAATAGTGAAATAGAAGAGTGGGAAAAGAAATACCACTTCCGGAGTTATCCACTACGGGCTCGATaGCAGACATGCTGTCATCTT +
Preference number: 4 (lower is better)
Translates to: LSNSEIEEWEKKYHFRSYPLRAR*QTCCHL
Trigger: AAGATGACAGCATGTCTGTCATCGAGCCCGTAGTGG...ATAACTCCGGAAGTGGTATTTCTTTTCCCACTCTTCTATTTCACTATTACTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR CCA 90 bp GGCTTGGGTGGTAGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTATTTCAGGTGCATATaGATTTGGTCTATCAGTGCA +
Preference number: 4 (lower is better)
Translates to: GLGGRFLNVGSVSKMLSHYFRCI*IWSISA
Trigger: TGCACTGATAGACCAAATCCATATGCACCTGAAATA...ATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCTACCACCCAAGCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR TCA 90 bp TTGAGTAATAGTGAAATAGAAGAGTGGGAAAAGAAATACCACTTCCGGAGTTATCAGTTGGTCAAAGTCTaGCGGGGTGACATATTTGCG +
Preference number: 4 (lower is better)
Translates to: LSNSEIEEWEKKYHFRSYQLVKV*RGDIFA
Trigger: CGCAAATATGTCACCCCGTCAGACTTTGACCAACTG...ATAACTCCGGAAGTGGTATTTCTTTTCCCACTCTTCTATTTCACTATTACTCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR TCA 90 bp GGTGGTAGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTCTCTCAGAGCAAAACAATTCTaGGCAGAGTCTTCAATTAGT +
Preference number: 4 (lower is better)
Translates to: GGRFLNVGSVSKMLSHSLRAKQF*AESSIS
Trigger: ACTAATTGAAGACTCTGCTCAGAATTGTTTTGCTCT...GAGAGAATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCTACCACC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR TCA 90 bp AGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTCTCTCGTTCAGGAGGTTTTCTTTGCATaGATTGTATTTCAGGTGCAT +
Preference number: 4 (lower is better)
Translates to: RFLNVGSVSKMLSHSLVQEVFFA*IVFQVH
Trigger: ATGCACCTGAAATACAATTCATGCAAAGAAAACCTC...CTGAACGAGAGAATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR TCA 90 bp GTAGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTCTCTCGTTCTCCTTGTCATACATTTaGAATGTTTCACGGAGGTTT +
Preference number: 4 (lower is better)
Translates to: VDFSMSAQCQKCCRILSFSLSYI*NVSRRF
Trigger: AAACCTCCGTGAAACATTTCAAATGTATGACAAGGA...GAACGAGAGAATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCTAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR GCA 90 bp TTGAGTAATAGTGAAATAGAAGAGTGGGAAAAGAAATACCACTTCCGGAGTTATAGTGCATCCAAGTCCTaGACCTTGGATTCCTCTGTA +
Preference number: 4 (lower is better)
Translates to: LSNSEIEEWEKKYHFRSYSASKS*TLDSSV
Trigger: TACAGAGGAATCCAAGGTGCAGGACTTGGATGCACT...ATAACTCCGGAAGTGGTATTTCTTTTCCCACTCTTCTATTTCACTATTACTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR GCA 90 bp GGTAGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTCTCTCGTTCACGGAGGTTTTCTTTaGATGAATTGTATTTCAGGT +
Preference number: 4 (lower is better)
Translates to: GRFLNVGSVSKMLSHSLVHGGFL*MNCISG
Trigger: ACCTGAAATACAATTCATGCAAAGAAAACCTCCGTG...AACGAGAGAATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCTACC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR CCA 90 bp AGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTCTCTCGTTCAGAGAATTTCGAACAGGTaGCTCAAAGATACTGATCAT +
Preference number: 4 (lower is better)
Translates to: RFLNVGSVSKMLSHSLVQRISNR*LKDTDH
Trigger: ATGATCAGTATCTTTGAGCCACCTGTTCGAAATTCT...CTGAACGAGAGAATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR GCA 90 bp AGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTCTCTCGTTCAGAATACTGGGAAGCGTTaGTCTCCATGTATTTTAAAA +
Preference number: 4 (lower is better)
Translates to: RFLNVGSVSKMLSHSLVQNTGKR*SPCILK
Trigger: TTTTAAAATACATGGAGAGCAACGCTTCCCAGTATT...CTGAACGAGAGAATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR GCA 90 bp GTAGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTCTCTCGTTCGAATTGTATTTCAGGTaGATATGGATTTGGTCTATC +
Preference number: 4 (lower is better)
Translates to: VDFSMSAQCQKCCRILSFELYFR*IWIWSI
Trigger: GATAGACCAAATCCATATGCACCTGAAATACAATTC...GAACGAGAGAATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCTAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR CCA 90 bp TTGAGTAATAGTGAAATAGAAGAGTGGGAAAAGAAATACCACTTCCGGAGTTATAGAAACTGTTTCAGTTaGTCAAAGTCTGACGGGGTG +
Preference number: 4 (lower is better)
Translates to: LSNSEIEEWEKKYHFRSYRNCFS*SKSDGV
Trigger: CACCCCGTCAGACTTTGACCAACTGAAACAGTTTCT...ATAACTCCGGAAGTGGTATTTCTTTTCCCACTCTTCTATTTCACTATTACTCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR TCA 90 bp TTGAGTAATAGTGAAATAGAAGAGTGGGAAAAGAAATACCACTTCCGGAGTTATCCTGTTTGTCAAAGGTaGGAAACTGTTTCAGTTGGT +
Preference number: 4 (lower is better)
Translates to: LSNSEIEEWEKKYHFRSYPVCQR*ETVSVG
Trigger: ACCAACTGAAACAGTTTCTCACCTTTGACAAACAGG...ATAACTCCGGAAGTGGTATTTCTTTTCCCACTCTTCTATTTCACTATTACTCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR TCA 90 bp TTGAGTAATAGTGAAATAGAAGAGTGGGAAAAGAAATACCACTTCCGGAGTTATGTCAACTGGAGAGAATaGTTTAACAACTTTAGTCCT +
Preference number: 4 (lower is better)
Translates to: LSNSEIEEWEKKYHFRSYVNWRE*FNNFSP
Trigger: AGGACTAAAGTTGTTAAATCATTCTCTCCAGTTGAC...ATAACTCCGGAAGTGGTATTTCTTTTCCCACTCTTCTATTTCACTATTACTCAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS GCA 90 bp GTGGAGCCGGTCTCCACCTATCCCCATGGTGGGACGTCGGACAACTaGATAGCCGTTCCTGTAGTTGAGTGTCTGGCTTCGGTGGAATGC +
Preference number: 5 (lower is better)
Translates to: VEPVSTYPHGGTSDN*IAVPVVECLASVEC
Trigger: GCATTCCACCGAAGCCAGACACTCAACTACAGGAACGGCTATGCAGTTGTCCGACGTCCCACCATGGGGATAGGTGGAGACCGGCTCCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS TCA 90 bp CTTTCCAGTTCTGGTGCGGGAAGCTCCGGCTTCTGGATCCGGTTCTaGATTGAGGCCAGGGCTTCTGGTGAATACTGGGAAGCGTTGCTC +
Preference number: 5 (lower is better)
Translates to: LSSSGAGSSGFWIRF*IEARASGEYWEALL
Trigger: GAGCAACGCTTCCCAGTATTCACCAGAAGCCCTGGCCTCAATTCAGAACCGGATCCAGAAGCCGGAGCTTCCCGCACCAGAACTGGAAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS TCA 90 bp TCTTTGCATTCTCCACCAAAACTTTGGGCATACGCTGTCGGTTCATaGGGAGTGGGAAGGGGTCTCTCCCGTTGTTCCGTTCGTGGACCT +
Preference number: 5 (lower is better)
Translates to: SLHSPPKLWAYAVGS*GVGRGLSRCSVRGP
Trigger: AGGTCCACGAACGGAACAACGGGAGAGACCCCTTCCCACTCCTCATGAACCGACAGCGTATGCCCAAAGTTTTGGTGGAGAATGCAAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS GCA 90 bp AACTGCATAGCCGTTCCTGTAGTTGAGTGTCTGGCTTCGGTGGAATaGTGTTTTCGTGGAGTCTGTAAAGGACGAGCCCGGGAGAAAGGG +
Preference number: 5 (lower is better)
Translates to: NCIAVPVVECLASVE*CFRGVCKGRAREKG
Trigger: CCCTTTCTCCCGGGCTCGTCCTTTACAGACTCCACGAAAACAGCATTCCACCGAAGCCAGACACTCAACTACAGGAACGGCTATGCAGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS CCA 90 bp ATTCTCCACCAAAACTTTGGGCATACGCTGTCGGTTCATGAGGAGTaGGAAGGGGTCTCTCCCGTTGTTCCGTTCGTGGACCTCTCTGAT +
Preference number: 5 (lower is better)
Translates to: ILHQNFGHTLSVHEE*EGVSPVVPFVDLSD
Trigger: ATCAGAGAGGTCCACGAACGGAACAACGGGAGAGACCCCTTCCCACTCCTCATGAACCGACAGCGTATGCCCAAAGTTTTGGTGGAGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS CCA 90 bp CGTGGCAAGAAAATAAGAGAAGACAAACCGACGGTCTTTGTCTTCTaGGATAGGGGATTCCAGGGCCGCCAGGTAGCGGAGCACCTTATT +
Preference number: 5 (lower is better)
Translates to: RGKKIREDKPTVFVF*DRGFQGRQVAEHLI
Trigger: AATAAGGTGCTCCGCTACCTGGCGGCCCTGGAATCCCCTATCCCAGAAGACAAAGACCGTCGGTTTGTCTTCTCTTATTTTCTTGCCACG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS TCA 90 bp CAAAAGCCACATGCGCAGGAACAAACTCTGCAAGTGGGGCTTGCTTaGGTGGCCCGTAAGTTAAGATGGGTGCCTTATTGGCCAGTTCAT +
Preference number: 5 (lower is better)
Translates to: QKPHAQEQTLQVGLA*VARKLRWVPYWPVH
Trigger: ATGAACTGGCCAATAAGGCACCCATCTTAACTTACGGGCCACTCAAGCAAGCCCCACTTGCAGAGTTTGTTCCTGCGCATGTGGCTTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS GCA 90 bp TCTATCAGTGCATCCAAGTCCTGCACCTTGGATTCCTCTGTACCCTaGACCATGGGTTCTCCTGTAGCTTGCTTGCTTTCCAGTTCTGGT +
Preference number: 5 (lower is better)
Translates to: SISASKSCTLDSSVP*TMGSPVACLLSSSG
Trigger: ACCAGAACTGGAAAGCAAGCAAGCTACAGGAGAACCCATGGTGCAGGGTACAGAGGAATCCAAGGTGCAGGACTTGGATGCACTGATAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR CAA 90 bp GGTGGTAGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTCTCTCGTGAACCGCTGGCGTTaGATTAGCTTGCCTTGTGGG +
Preference number: 5 (lower is better)
Translates to: GGRFLNVGSVSKMLSHSLVNRWR*ISLPCG
Trigger: CCCACAAGGCAAGCTAATCAAACGCCAGCGGTTCAC...GAGAGAATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCTACCACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR CAA 90 bp GGTAGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTCTCTCGTTAAGGGGTCTCTCCCGTaGTTCCGTTCGTGGACCTCT +
Preference number: 5 (lower is better)
Translates to: GRFLNVGSVSKMLSHSLVKGSLP*FRSWTS
Trigger: AGAGGTCCACGAACGGAACAACGGGAGAGACCCCTT...AACGAGAGAATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCTACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR CAA 90 bp AGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTCTCTCGTTCAGGTCCTGCCCAGGAATTaGCCCCCGATGATCCCAGAA +
Preference number: 5 (lower is better)
Translates to: RFLNVGSVSKMLSHSLVQVLPRN*PPMIPE
Trigger: TTCTGGGATCATCGGGGGCAAATTCCTGGGCAGGAC...CTGAACGAGAGAATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR CAA 90 bp GGTAGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTCTCTCGTTGGATCCGGTTCTGAATaGAGGCCAGGGCTTCTGGTG +
Preference number: 5 (lower is better)
Translates to: GRFLNVGSVSKMLSHSLVGSGSE*RPGLLV
Trigger: CACCAGAAGCCCTGGCCTCAATTCAGAACCGGATCC...AACGAGAGAATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCTACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR CAA 90 bp GGCTTGGGTGGTAGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATGGGTTCTCCTGTAGCTaGCTTGCTTTCCAGTTCTGG +
Preference number: 5 (lower is better)
Translates to: GLGGRFLNVGSVSKMLSHGFSCS*LAFQFW
Trigger: CCAGAACTGGAAAGCAAGCAAGCTACAGGAGAACCC...ATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCTACCACCCAAGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS TCA 90 bp TTAGCTTGCCTTGTGGGATCCCAGAGTTCTCCACTACGGGCTCGATaGCAGACATGCTGTCATCTTCTAGGTAGTAGTAAATGTTCACGT +
Preference number: 5 (lower is better)
Translates to: LACLVGSQSSPLRAR*QTCCHLLGSSKCSR
Trigger: ACGTGAACATTTACTACTACCTAGAAGATGACAGCATGTCTGTCATCGAGCCCGTAGTGGAGAACTCTGGGATCCCACAAGGCAAGCTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR CAA 90 bp GGTGGTAGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTCTCTCAAGATGGGTGCCTTATaGGCCAGTTCATCCAGCTCG +
Preference number: 5 (lower is better)
Translates to: GGRFLNVGSVSKMLSHSLKMGAL*ASSSSS
Trigger: CGAGCTGGATGAACTGGCCAATAAGGCACCCATCTT...GAGAGAATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCTACCACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS TCA 90 bp GACCTGTTTGTCAAAGGTGAGAAACTGTTTCAGTTGGTCAAAGTCTaGCGGGGTGACATATTTGCGCACAGGTTCTTTCCGGAGTTGAGT +
Preference number: 5 (lower is better)
Translates to: DLFVKGEKLFQLVKV*RGDIFAHRFFPELS
Trigger: ACTCAACTCCGGAAAGAACCTGTGCGCAAATATGTCACCCCGTCAGACTTTGACCAACTGAAACAGTTTCTCACCTTTGACAAACAGGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS CCA 90 bp CCTGCCCAGGAATTTGCCCCCGATGATCCCAGAATTTCGAACAGGTaGCTCAAAGATACTGATCATATCCGTGGCAAGAAAATAAGAGAA +
Preference number: 5 (lower is better)
Translates to: PAQEFAPDDPRISNR*LKDTDHIRGKKIRE
Trigger: TTCTCTTATTTTCTTGCCACGGATATGATCAGTATCTTTGAGCCACCTGTTCGAAATTCTGGGATCATCGGGGGCAAATTCCTGGGCAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR CAA 90 bp AGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTCTCTCGTTCAGTGGCGTTTGATTAGCTaGCCTTGTGGGATCCCAGAG +
Preference number: 5 (lower is better)
Translates to: RFLNVGSVSKMLSHSLVQWRLIS*PCGIPE
Trigger: CTCTGGGATCCCACAAGGCAAGCTAATCAAACGCCA...CTGAACGAGAGAATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR CAA 90 bp GGTGGTAGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTCTCTCTTCTCCACCAAAACTTaGGGCATACGCTGTCGGTTC +
Preference number: 5 (lower is better)
Translates to: GGRFLNVGSVSKMLSHSLFSTKT*GIRCRF
Trigger: GAACCGACAGCGTATGCCCAAAGTTTTGGTGGAGAA...GAGAGAATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCTACCACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS CCA 90 bp CATTATAAGGAGGCAACTCCTGTTTTACTGGAGGTGGCTCCTTCTTaGTCACATCAACTGGTGGTAAGTCAGGCATTCCAAACTTGTCTT +
Preference number: 5 (lower is better)
Translates to: HYKEATPVLLEVAPS*SHQLVVSQAFQTCL
Trigger: AAGACAAGTTTGGAATGCCTGACTTACCACCAGTTGATGTGACCAAGAAGGAGCCACCTCCAGTAAAACAGGAGTTGCCTCCTTATAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS TCA 90 bp GTAGTAGTAAATGTTCACGTGGCGGATTCGGTAATGCTCCTCCATTaGTATGGGAACATCTTCTTGGAAGTAGGCACTAAATTTCAGCAC +
Preference number: 5 (lower is better)
Translates to: VVVNVHVADSVMLLH*YGNIFLEVGTKFQH
Trigger: GTGCTGAAATTTAGTGCCTACTTCCAAGAAGATGTTCCCATATCAATGGAGGAGCATTACCGAATCCGCCACGTGAACATTTACTACTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR CAA 90 bp GGTGGTAGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTCTCTCAATTTCAGCACCTTTTaGTCAAAAGCCACATGCGCA +
Preference number: 5 (lower is better)
Translates to: GGRFLNVGSVSKMLSHSLNFSTF*SKATCA
Trigger: TGCGCATGTGGCTTTTGACAAAAAGGTGCTGAAATT...GAGAGAATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCTACCACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR CAA 90 bp GTAGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTCTCTCGTTCAATCGAAGGACCTGTTaGTCAAAGGTGAGAAACTGT +
Preference number: 5 (lower is better)
Translates to: VDFSMSAQCQKCCRILSFNRRTC*SKVRNC
Trigger: ACAGTTTCTCACCTTTGACAAACAGGTCCTTCGATT...GAACGAGAGAATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR CAA 90 bp TTGAGTAATAGTGAAATAGAAGAGTGGGAAAAGAAATACCACTTCCGGAGTTATTCTCCTGTAGCTTGCTaGCTTTCCAGTTCTGGTGCG +
Preference number: 5 (lower is better)
Translates to: LSNSEIEEWEKKYHFRSYSPVAC*LSSSGA
Trigger: CGCACCAGAACTGGAAAGCAAGCAAGCTACAGGAGA...ATAACTCCGGAAGTGGTATTTCTTTTCCCACTCTTCTATTTCACTATTACTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR CAA 90 bp TTGAGTAATAGTGAAATAGAAGAGTGGGAAAAGAAATACCACTTCCGGAGTTATACAAACCGACGGTCTTaGTCTTCTGGGATAGGGGAT +
Preference number: 5 (lower is better)
Translates to: LSNSEIEEWEKKYHFRSYTNRRS*SSGIGD
Trigger: ATCCCCTATCCCAGAAGACAAAGACCGTCGGTTTGT...ATAACTCCGGAAGTGGTATTTCTTTTCCCACTCTTCTATTTCACTATTACTCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR CAA 90 bp AGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTCTCTCGTTCAGGAATACTGGGAAGCGTaGCTCTCCATGTATTTTAAA +
Preference number: 5 (lower is better)
Translates to: RFLNVGSVSKMLSHSLVQEYWEA*LSMYFK
Trigger: TTTAAAATACATGGAGAGCAACGCTTCCCAGTATTC...CTGAACGAGAGAATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR CAA 90 bp GGTAGATTTCTCAATGTCGGCTCAGTGTCAAAAATGTTGTCGCATTCTCTCGTTTCACGGAGGTTTTCTTaGCATGAATTGTATTTCAGG +
Preference number: 5 (lower is better)
Translates to: GRFLNVGSVSKMLSHSLVSRRFS*HELYFR
Trigger: CCTGAAATACAATTCATGCAAAGAAAACCTCCGTGA...AACGAGAGAATGCGACAACATTTTTGACACTGAGCCGACATTGAGAAATCTACC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS-3UTR CAA 90 bp TTGAGTAATAGTGAAATAGAAGAGTGGGAAAAGAAATACCACTTCCGGAGTTATATCCTTGTCATACATTaGAAATGTTTCACGGAGGTT +
Preference number: 5 (lower is better)
Translates to: LSNSEIEEWEKKYHFRSYILVIH*KCFTEV
Trigger: AACCTCCGTGAAACATTTCAAATGTATGACAAGGAT...ATAACTCCGGAAGTGGTATTTCTTTTCCCACTCTTCTATTTCACTATTACTCAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS CCA 72 bp GCTGGTTGTAGTGGAGCCGGTCTCCACCTATCCCCATaGTGGGACGTCGGACAACTGCATAGCCGTTCCTGT +
Preference number: 6 (lower is better)
Translates to: AGCSGAGLHLSP*WDVGQLHSRSC
Trigger: ACAGGAACGGCTATGCAGTTGTCCGACGTCCCACCATGGGGATAGGTGGAGACCGGCTCCACTACAACCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS CAA 90 bp GGCATACGCTGTCGGTTCATGAGGAGTGGGAAGGGGTCTCTCCCGTaGTTCCGTTCGTGGACCTCTCTGATCTCCACGGTGTCATCCATG +
Preference number: 6 (lower is better)
Translates to: GIRCRFMRSGKGSLP*FRSWTSLISTVSSM
Trigger: CATGGATGACACCGTGGAGATCAGAGAGGTCCACGAACGGAACAACGGGAGAGACCCCTTCCCACTCCTCATGAACCGACAGCGTATGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS CAA 90 bp CCAGTTCTGGTGCGGGAAGCTCCGGCTTCTGGATCCGGTTCTGAATaGAGGCCAGGGCTTCTGGTGAATACTGGGAAGCGTTGCTCTCCA +
Preference number: 6 (lower is better)
Translates to: PVLVREAPASGSGSE*RPGLLVNTGKRCSP
Trigger: TGGAGAGCAACGCTTCCCAGTATTCACCAGAAGCCCTGGCCTCAATTCAGAACCGGATCCAGAAGCCGGAGCTTCCCGCACCAGAACTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS GCA 72 bp TCCTCTGTACCCTGCACCATGGGTTCTCCTGTAGCTTaGTTGCTTTCCAGTTCTGGTGCGGGAAGCTCCGGC +
Preference number: 6 (lower is better)
Translates to: SSVPCTMGSPVA*LLSSSGAGSSG
Trigger: GCCGGAGCTTCCCGCACCAGAACTGGAAAGCAAGCAAGCTACAGGAGAACCCATGGTGCAGGGTACAGAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS CCA 72 bp GGTTGTAGTGGAGCCGGTCTCCACCTATCCCCATGGTaGGACGTCGGACAACTGCATAGCCGTTCCTGTAGT +
Preference number: 6 (lower is better)
Translates to: GCSGAGLHLSPW*DVGQLHSRSCS
Trigger: ACTACAGGAACGGCTATGCAGTTGTCCGACGTCCCACCATGGGGATAGGTGGAGACCGGCTCCACTACAACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS CCA 72 bp AGGAGTGGGAAGGGGTCTCTCCCGTTGTTCCGTTCGTaGACCTCTCTGATCTCCACGGTGTCATCCATGAGG +
Preference number: 6 (lower is better)
Translates to: RSGKGSLPLFRS*TSLISTVSSMR
Trigger: CCTCATGGATGACACCGTGGAGATCAGAGAGGTCCACGAACGGAACAACGGGAGAGACCCCTTCCCACTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS CAA 72 bp TGTCGGTTCATGAGGAGTGGGAAGGGGTCTCTCCCGTaGTTCCGTTCGTGGACCTCTCTGATCTCCACGGTG +
Preference number: 6 (lower is better)
Translates to: CRFMRSGKGSLP*FRSWTSLISTV
Trigger: CACCGTGGAGATCAGAGAGGTCCACGAACGGAACAACGGGAGAGACCCCTTCCCACTCCTCATGAACCGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS CAA 72 bp GTGCGGGAAGCTCCGGCTTCTGGATCCGGTTCTGAATaGAGGCCAGGGCTTCTGGTGAATACTGGGAAGCGT +
Preference number: 6 (lower is better)
Translates to: VREAPASGSGSE*RPGLLVNTGKR
Trigger: ACGCTTCCCAGTATTCACCAGAAGCCCTGGCCTCAATTCAGAACCGGATCCAGAAGCCGGAGCTTCCCGCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS GCA 72 bp GTCTCCACCTATCCCCATGGTGGGACGTCGGACAACTaGATAGCCGTTCCTGTAGTTGAGTGTCTGGCTTCG +
Preference number: 6 (lower is better)
Translates to: VSTYPHGGTSDN*IAVPVVECLAS
Trigger: CGAAGCCAGACACTCAACTACAGGAACGGCTATGCAGTTGTCCGACGTCCCACCATGGGGATAGGTGGAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS CAA 72 bp TCTGTACCCTGCACCATGGGTTCTCCTGTAGCTTGCTaGCTTTCCAGTTCTGGTGCGGGAAGCTCCGGCTTC +
Preference number: 6 (lower is better)
Translates to: SVPCTMGSPVAC*LSSSGAGSSGF
Trigger: GAAGCCGGAGCTTCCCGCACCAGAACTGGAAAGCAAGCAAGCTACAGGAGAACCCATGGTGCAGGGTACAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS CAA 90 bp CACCTTGGATTCCTCTGTACCCTGCACCATGGGTTCTCCTGTAGCTaGCTTGCTTTCCAGTTCTGGTGCGGGAAGCTCCGGCTTCTGGAT +
Preference number: 6 (lower is better)
Translates to: HLGFLCTLHHGFSCS*LAFQFWCGKLRLLD
Trigger: ATCCAGAAGCCGGAGCTTCCCGCACCAGAACTGGAAAGCAAGCAAGCTACAGGAGAACCCATGGTGCAGGGTACAGAGGAATCCAAGGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS GCA 72 bp GCCGTTCCTGTAGTTGAGTGTCTGGCTTCGGTGGAATaGTGTTTTCGTGGAGTCTGTAAAGGACGAGCCCGG +
Preference number: 6 (lower is better)
Translates to: AVPVVECLASVE*CFRGVCKGRAR
Trigger: CCGGGCTCGTCCTTTACAGACTCCACGAAAACAGCATTCCACCGAAGCCAGACACTCAACTACAGGAACGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS CCA 72 bp CAAAACTTTGGGCATACGCTGTCGGTTCATGAGGAGTaGGAAGGGGTCTCTCCCGTTGTTCCGTTCGTGGAC +
Preference number: 6 (lower is better)
Translates to: QNFGHTLSVHEE*EGVSPVVPFVD
Trigger: GTCCACGAACGGAACAACGGGAGAGACCCCTTCCCACTCCTCATGAACCGACAGCGTATGCCCAAAGTTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS TCA 72 bp TGGGACGTCGGACAACTGCATAGCCGTTCCTGTAGTTaGGTGTCTGGCTTCGGTGGAATGCTGTTTTCGTGG +
Preference number: 6 (lower is better)
Translates to: WDVGQLHSRSCS*VSGFGGMLFSW
Trigger: CCACGAAAACAGCATTCCACCGAAGCCAGACACTCAACTACAGGAACGGCTATGCAGTTGTCCGACGTCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS TCA 72 bp TCTCCACCAAAACTTTGGGCATACGCTGTCGGTTCATaGGGAGTGGGAAGGGGTCTCTCCCGTTGTTCCGTT +
Preference number: 6 (lower is better)
Translates to: SPPKLWAYAVGS*GVGRGLSRCSV
Trigger: AACGGAACAACGGGAGAGACCCCTTCCCACTCCTCATGAACCGACAGCGTATGCCCAAAGTTTTGGTGGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS GCA 72 bp GCATCCAAGTCCTGCACCTTGGATTCCTCTGTACCCTaGACCATGGGTTCTCCTGTAGCTTGCTTGCTTTCC +
Preference number: 6 (lower is better)
Translates to: ASKSCTLDSSVP*TMGSPVACLLS
Trigger: GGAAAGCAAGCAAGCTACAGGAGAACCCATGGTGCAGGGTACAGAGGAATCCAAGGTGCAGGACTTGGATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS TCA 72 bp CATGCGCAGGAACAAACTCTGCAAGTGGGGCTTGCTTaGGTGGCCCGTAAGTTAAGATGGGTGCCTTATTGG +
Preference number: 6 (lower is better)
Translates to: HAQEQTLQVGLA*VARKLRWVPYW
Trigger: CCAATAAGGCACCCATCTTAACTTACGGGCCACTCAAGCAAGCCCCACTTGCAGAGTTTGTTCCTGCGCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS TCA 72 bp CGAACCGATGGCCGAACACCTCAATCACGGCACCGATaGAGAAGTCACTTGGTGAGTAGTAGATGGGGTTGT +
Preference number: 6 (lower is better)
Translates to: RTDGRTPQSRHR*RSHLVSSRWGC
Trigger: ACAACCCCATCTACTACTCACCAAGTGACTTCTTCATCGGTGCCGTGATTGAGGTGTTCGGCCATCGGTTCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS CCA 72 bp GGATTTGGTCTATCAGTGCATCCAAGTCCTGCACCTTaGATTCCTCTGTACCCTGCACCATGGGTTCTCCTG +
Preference number: 6 (lower is better)
Translates to: GFGLSVHPSPAP*IPLYPAPWVLL
Trigger: CAGGAGAACCCATGGTGCAGGGTACAGAGGAATCCAAGGTGCAGGACTTGGATGCACTGATAGACCAAATCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS CAA 72 bp TGGTCTCCCATATCATTCTTGGTGAACCGCTGGCGTTaGATTAGCTTGCCTTGTGGGATCCCAGAGTTCTCC +
Preference number: 6 (lower is better)
Translates to: WSPISFLVNRWR*ISLPCGIPEFS
Trigger: GGAGAACTCTGGGATCCCACAAGGCAAGCTAATCAAACGCCAGCGGTTCACCAAGAATGATATGGGAGACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS CAA 72 bp TGGATTTGGTCTATCAGTGCATCCAAGTCCTGCACCTaGGATTCCTCTGTACCCTGCACCATGGGTTCTCCT +
Preference number: 6 (lower is better)
Translates to: WIWSISASKSCT*DSSVPCTMGSP
Trigger: AGGAGAACCCATGGTGCAGGGTACAGAGGAATCCAAGGTGCAGGACTTGGATGCACTGATAGACCAAATCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS CCA 72 bp GAGGCAACTCCTGTTTTACTGGAGGTGGCTCCTTCTTaGTCACATCAACTGGTGGTAAGTCAGGCATTCCAA +
Preference number: 6 (lower is better)
Translates to: EATPVLLEVAPS*SHQLVVSQAFQ
Trigger: TTGGAATGCCTGACTTACCACCAGTTGATGTGACCAAGAAGGAGCCACCTCCAGTAAAACAGGAGTTGCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS TCA 72 bp CTTGTGGGATCCCAGAGTTCTCCACTACGGGCTCGATaGCAGACATGCTGTCATCTTCTAGGTAGTAGTAAA +
Preference number: 6 (lower is better)
Translates to: LVGSQSSPLRAR*QTCCHLLGSSK
Trigger: TTTACTACTACCTAGAAGATGACAGCATGTCTGTCATCGAGCCCGTAGTGGAGAACTCTGGGATCCCACAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS CCA 72 bp AAAACATACTCATCTGTATCGAGGATGACGAACCGATaGCCGAACACCTCAATCACGGCACCGATGAAGAAG +
Preference number: 6 (lower is better)
Translates to: KTYSSVSRMTNR*PNTSITAPMKK
Trigger: CTTCTTCATCGGTGCCGTGATTGAGGTGTTCGGCCATCGGTTCGTCATCCTCGATACAGATGAGTATGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS TCA 72 bp GTCAAAGGTGAGAAACTGTTTCAGTTGGTCAAAGTCTaGCGGGGTGACATATTTGCGCACAGGTTCTTTCCG +
Preference number: 6 (lower is better)
Translates to: VKGEKLFQLVKV*RGDIFAHRFFP
Trigger: CGGAAAGAACCTGTGCGCAAATATGTCACCCCGTCAGACTTTGACCAACTGAAACAGTTTCTCACCTTTGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS CAA 72 bp GAGAATGATTTAACAACTTTAGTCCTGCCCAGGAATTaGCCCCCGATGATCCCAGAATTTCGAACAGGTGGC +
Preference number: 6 (lower is better)
Translates to: ENDLTTLVLPRN*PPMIPEFRTGG
Trigger: GCCACCTGTTCGAAATTCTGGGATCATCGGGGGCAAATTCCTGGGCAGGACTAAAGTTGTTAAATCATTCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS TCA 72 bp AGATGGCATAGAATCGAAGGACCTGTTTGTCAAAGGTaGGAAACTGTTTCAGTTGGTCAAAGTCTGACGGGG +
Preference number: 6 (lower is better)
Translates to: RWHRIEGPVCQR*ETVSVGQSLTG
Trigger: CCCCGTCAGACTTTGACCAACTGAAACAGTTTCTCACCTTTGACAAACAGGTCCTTCGATTCTATGCCATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS CCA 72 bp GAATTTGCCCCCGATGATCCCAGAATTTCGAACAGGTaGCTCAAAGATACTGATCATATCCGTGGCAAGAAA +
Preference number: 6 (lower is better)
Translates to: EFAPDDPRISNR*LKDTDHIRGKK
Trigger: TTTCTTGCCACGGATATGATCAGTATCTTTGAGCCACCTGTTCGAAATTCTGGGATCATCGGGGGCAAATTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS CAA 90 bp TCAACTGGAGAGAATGATTTAACAACTTTAGTCCTGCCCAGGAATTaGCCCCCGATGATCCCAGAATTTCGAACAGGTGGCTCAAAGATA +
Preference number: 6 (lower is better)
Translates to: STGENDLTTLVLPRN*PPMIPEFRTGGSKI
Trigger: TATCTTTGAGCCACCTGTTCGAAATTCTGGGATCATCGGGGGCAAATTCCTGGGCAGGACTAAAGTTGTTAAATCATTCTCTCCAGTTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS TCA 72 bp AATGTTCACGTGGCGGATTCGGTAATGCTCCTCCATTaGTATGGGAACATCTTCTTGGAAGTAGGCACTAAA +
Preference number: 6 (lower is better)
Translates to: NVHVADSVMLLH*YGNIFLEVGTK
Trigger: TTTAGTGCCTACTTCCAAGAAGATGTTCCCATATCAATGGAGGAGCATTACCGAATCCGCCACGTGAACATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS GCA 72 bp ATTGTATTTCAGGTGCATATGGATTTGGTCTATCAGTaGATCCAAGTCCTGCACCTTGGATTCCTCTGTACC +
Preference number: 6 (lower is better)
Translates to: IVFQVHMDLVYQ*IQVLHLGFLCT
Trigger: GGTACAGAGGAATCCAAGGTGCAGGACTTGGATGCACTGATAGACCAAATCCATATGCACCTGAAATACAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6
CDS GCA 72 bp TGTCATACATTTGAAATGTTTCACGGAGGTTTTCTTTaGATGAATTGTATTTCAGGTGCATATGGATTTGGT +
Preference number: 6 (lower is better)
Translates to: CHTFEMFHGGFL*MNCISGAYGFG
Trigger: ACCAAATCCATATGCACCTGAAATACAATTCATGCAAAGAAAACCTCCGTGAAACATTTCAAATGTATGACA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038447.6