RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for EFEMP2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024909

Ensembl transcript IDs: ENSMUST00000070118.14, ENSMUST00000164204.2, ENSMUST00000164388.2, ENSMUST00000165485.8, ENSMUST00000166253.8, ENSMUST00000166303.9, ENSMUST00000167304.8, ENSMUST00000167371.8, ENSMUST00000167827.2, ENSMUST00000168330.2, ENSMUST00000169943.8, ENSMUST00000235523.2, ENSMUST00000236518.2

Found 216 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCCCTGCGGGCAAGGGTTTGGTTGTTGAGCATGGGCCGCTGGCGGTaGAGGTCCTTCACCATGGAGATCACTGATGACGGCAGCAGAGCG +
Preference number: 1 (lower is better)
Translates to: ALRARVWLLSMGRWR*RSFTMEITDDGSRA
Trigger: CGCTCTGCTGCCGTCATCAGTGATCTCCATGGTGAAGGACCTCCACCGCCAGCGGCCCATGCTCAACAACCAAACCCTTGCCCGCAGGGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169943.8
3UTR CCA 90 bp GGTGACCATCTCCAGGTCCAGCACGTACTCCCGGGGTCCCGTCACTaGCCTGGCGAGGACCAGCATGGCGCTGACATTGTTGATTTGCCT +
Preference number: 1 (lower is better)
Translates to: GDHLQVQHVLPGSRH*PGEDQHGADIVDLP
Trigger: AGGCAAATCAACAATGTCAGCGCCATGCTGGTCCTCGCCAGGCCAGTGACGGGACCCCGGGAGTACGTGCTGGACCTGGAGATGGTCACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168330.2
3UTR CCA 90 bp CTCGTAGCCCTGCGGGCAAGGGTTTGGTTGTTGAGCATGGGCCGCTaGCGGTGGAGGTCCTTCACCATGGAGATCACTGATGACGGCAGC +
Preference number: 1 (lower is better)
Translates to: LVALRARVWLLSMGR*RWRSFTMEITDDGS
Trigger: GCTGCCGTCATCAGTGATCTCCATGGTGAAGGACCTCCACCGCCAGCGGCCCATGCTCAACAACCAAACCCTTGCCCGCAGGGCTACGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169943.8
3UTR TCA 90 bp GCTCATAGCCCTGGTTACAGCGACACAGGAAGGTCCCATAGGAGTTaGAGCAGCGCTGCTCACATGGGGCTCCCATGTCACACTCATTCA +
Preference number: 1 (lower is better)
Translates to: AHSPGYSDTGRSHRS*SSAAHMGLPCHTHS
Trigger: TGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169943.8
3UTR CCA 90 bp ACACAAGAGCGGTTGTTAGGTCCCAACTGGAAGCCTGGCTCACACTaGCATCGAAAAGAGCCCGGCAGGTTCACACATCGATGCTGGCAA +
Preference number: 1 (lower is better)
Translates to: TQERLLGPNWKPGSH*HRKEPGRFTHRCWQ
Trigger: TTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169943.8
3UTR CCA 90 bp GCGACACAGGAAGGTCCCATAGGAGTTGAAGCAGCGCTGCTCACATaGGGCTCCCATGTCACACTCATTCACATCCACACAAGAGCGGTT +
Preference number: 1 (lower is better)
Translates to: ATQEGPIGVEAALLT*GSHVTLIHIHTRAV
Trigger: AACCGCTCTTGTGTGGATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169943.8
3UTR CCA 90 bp ATTCACATCCACACAAGAGCGGTTGTTAGGTCCCAACTGGAAGCCTaGCTCACACTGGCATCGAAAAGAGCCCGGCAGGTTCACACATCG +
Preference number: 1 (lower is better)
Translates to: IHIHTRAVVRSQLEA*LTLASKRARQVHTS
Trigger: CGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGGATGTGAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169943.8
3UTR CCA 90 bp TCACACTCATTCACATCCACACAAGAGCGGTTGTTAGGTCCCAACTaGAAGCCTGGCTCACACTGGCATCGAAAAGAGCCCGGCAGGTTC +
Preference number: 1 (lower is better)
Translates to: SHSFTSTQERLLGPN*KPGSHWHRKEPGRF
Trigger: GAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGGATGTGAATGAGTGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169943.8
3UTR-3UTR TCA 90 bp AGCCATCCCGGTGCAGCTCATAGCCCTGGTTACAGCGACACAGGAAGGTCCCATAGGTTATGGCAGTCCTaGCTAGGGCGACAGTCATGC +
Preference number: 2 (lower is better)
Translates to: SHPGAAHSPGYSDTGRSHRLWQS*LGRQSC
Trigger: GCATGACTGTCGCCCTAGTCAGGACTGCCATAACCT...ATGGGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169943.8
3UTR-3UTR GCA 90 bp GCAGGAGAAGCCATCCCGGTGCAGCTCATAGCCCTGGTTACAGCGACACAGGAACTAGGGCGACAGTCATaGAAAGCCTGGGTACACTCG +
Preference number: 2 (lower is better)
Translates to: AGEAIPVQLIALVTATQELGRQS*KAWVHS
Trigger: CGAGTGTACCCAGGCTTTGCATGACTGTCGCCCTAG...TTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169943.8
3UTR-3UTR GCA 90 bp AAACTCCTAGCACTGACCAGAACATGGTTCCTGGGCCCAGTATCAGCCAAGCTCGGTGTGCGCCACCACTaGCCACTGCTCAGGCTGATT +
Preference number: 2 (lower is better)
Translates to: KLLALTRTWFLGPVSAKLGVRHH*PLLRLI
Trigger: AATCAGCCTGAGCAGTGGGCAGTGGTGGCGCACACC...GAGCTTGGCTGATACTGGGCCCAGGAACCATGTTCTGGTCAGTGCTAGGAGTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
3UTR-3UTR TCA 90 bp AGAACATGGTTCCTGGGCCCAGTATCAGCCAAGCTCTTGAGTGAGGACCTGAGGTGCCTCTGTCTCCCCTaGGTGCTGGGATTAAAGGTG +
Preference number: 2 (lower is better)
Translates to: RTWFLGPVSAKLLSEDLRCLCLP*VLGLKV
Trigger: CACCTTTAATCCCAGCACTCAGGGGAGACAGAGGCA...CCTCAGGTCCTCACTCAAGAGCTTGGCTGATACTGGGCCCAGGAACCATGTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
3UTR-3UTR CCA 90 bp GCACTGACCAGAACATGGTTCCTGGGCCCAGTATCAGCCAAGCTCTTGAGTGAGAAACCTCAGCCTGACTaGAGAGGACCCCTTGTGTGG +
Preference number: 2 (lower is better)
Translates to: ALTRTWFLGPVSAKLLSEKPQPD*RGPLVW
Trigger: CCACACAAGGGGTCCTCTCCAGTCAGGCTGAGGTTT...CTCACTCAAGAGCTTGGCTGATACTGGGCCCAGGAACCATGTTCTGGTCAGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
3UTR CAA 90 bp CATGGGGCTCCCATGTCACACTCATTCACATCCACACAAGAGCGGTaGTTAGGTCCCAACTGGAAGCCTGGCTCACACTGGCATCGAAAA +
Preference number: 2 (lower is better)
Translates to: HGAPMSHSFTSTQER*LGPNWKPGSHWHRK
Trigger: TTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGGATGTGAATGAGTGTGACATGGGAGCCCCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169943.8
3UTR-3UTR GCA 90 bp CAGCCAGGACTCCTTCTTTCTCCCTTTATTGTCCTTCACATCATAGTTCCTTTACTAGGCCCCCGGGGCTaGTTAAGCTATGGGAGGGGG +
Preference number: 2 (lower is better)
Translates to: QPGLLLSPFIVLHIIVPLLGPRG*LSYGRG
Trigger: CCCCCTCCCATAGCTTAAGCAGCCCCGGGGGCCTAG...TAAAGGAACTATGATGTGAAGGACAATAAAGGGAGAAAGAAGGAGTCCTGGCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
3UTR-3UTR CCA 90 bp CTCACATGGGGCTCCCATGTCACACTCATTCACATCCACACAAGAGCGGTTGTTCAGTCATGCAAAGCCTaGGTACACTCGTCCACATCC +
Preference number: 2 (lower is better)
Translates to: LTWGSHVTLIHIHTRAVVQSCKA*VHSSTS
Trigger: GGATGTGGACGAGTGTACCCAGGCTTTGCATGACTG...AACAACCGCTCTTGTGTGGATGTGAATGAGTGTGACATGGGAGCCCCATGTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169943.8
3UTR-3UTR CCA 90 bp AAACTCCTAGCACTGACCAGAACATGGTTCCTGGGCCCAGTATCAGCCAAGCTCCTCTGTAGATCAGGCTaGCCTCGAACTCAGAAATCC +
Preference number: 2 (lower is better)
Translates to: KLLALTRTWFLGPVSAKLLCRSG*PRTQKS
Trigger: GGATTTCTGAGTTCGAGGCCAGCCTGATCTACAGAG...GAGCTTGGCTGATACTGGGCCCAGGAACCATGTTCTGGTCAGTGCTAGGAGTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
3UTR-3UTR TCA 90 bp ACCCTAAATATGGATGGCTGGATAATAGATAAACACTCCTTAGGGGCTGGGAATTGCCTCTGTCTCCCCTaGGTGCTGGGATTAAAGGTG +
Preference number: 2 (lower is better)
Translates to: TLNMDGWIIDKHSLGAGNCLCLP*VLGLKV
Trigger: CACCTTTAATCCCAGCACTCAGGGGAGACAGAGGCA...ATTCCCAGCCCCTAAGGAGTGTTTATCTATTATCCAGCCATCCATATTTAGGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
3UTR-3UTR CCA 90 bp ACCCTAAATATGGATGGCTGGATAATAGATAAACACTCCTTAGGGGCTGGGAATCCAGAACATGGTTCCTaGGCCCAGTATCAGCCAAGC +
Preference number: 2 (lower is better)
Translates to: TLNMDGWIIDKHSLGAGNPEHGS*AQYQPS
Trigger: GCTTGGCTGATACTGGGCCCAGGAACCATGTTCTGG...ATTCCCAGCCCCTAAGGAGTGTTTATCTATTATCCAGCCATCCATATTTAGGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
3UTR-3UTR CCA 90 bp ACCCTAAATATGGATGGCTGGATAATAGATAAACACTCCTTAGGGGCTGGGAATCCTCATTCTAGTGACTaGAGACCAGAGGCTTGTACA +
Preference number: 2 (lower is better)
Translates to: TLNMDGWIIDKHSLGAGNPHSSD*RPEACT
Trigger: TGTACAAGCCTCTGGTCTCCAGTCACTAGAATGAGG...ATTCCCAGCCCCTAAGGAGTGTTTATCTATTATCCAGCCATCCATATTTAGGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
3UTR TCA 72 bp CACCTGCCCCTCTCGCAGGCCAGCCCCTTCCCGGGCTaGGGTTACTCACCCACCTCAGCCAGGACTCCTTCT +
Preference number: 3 (lower is better)
Translates to: HLPLSQASPFPG*GYSPTSARTPS
Trigger: AGAAGGAGTCCTGGCTGAGGTGGGTGAGTAACCTCAGCCCGGGAAGGGGCTGGCCTGCGAGAGGGGCAGGTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
3UTR CCA 72 bp CTCCAGGTCCAGCACGTACTCCCGGGGTCCCGTCACTaGCCTGGCGAGGACCAGCATGGCGCTGACATTGTT +
Preference number: 3 (lower is better)
Translates to: LQVQHVLPGSRH*PGEDQHGADIV
Trigger: AACAATGTCAGCGCCATGCTGGTCCTCGCCAGGCCAGTGACGGGACCCCGGGAGTACGTGCTGGACCTGGAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168330.2
3UTR-3UTR CAA 90 bp CAGGAAGGTCCCATAGGAGTTGAAGCAGCGCTGCTCACATGGGGCTCCCATGTCGCAAGGGTTTGGTTGTaGAGCATGGGCCGCTGGCGG +
Preference number: 3 (lower is better)
Translates to: QEGPIGVEAALLTWGSHVARVWL*SMGRWR
Trigger: CCGCCAGCGGCCCATGCTCAACAACCAAACCCTTGC...GACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169943.8
3UTR CCA 72 bp CTTCTGACACGGCCCCTGCTTCCTAGGACAGGGCTTTaGGAGCAGAGGCAGGGCAGCTCCCACTTACATGAC +
Preference number: 3 (lower is better)
Translates to: LLTRPLLPRTGL*EQRQGSSHLHD
Trigger: GTCATGTAAGTGGGAGCTGCCCTGCCTCTGCTCCCAAAGCCCTGTCCTAGGAAGCAGGGGCCGTGTCAGAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164388.2
3UTR CCA 72 bp GCAAGGGTTTGGTTGTTGAGCATGGGCCGCTGGCGGTaGAGGTCCTTCACCATGGAGATCACTGATGACGGC +
Preference number: 3 (lower is better)
Translates to: ARVWLLSMGRWR*RSFTMEITDDG
Trigger: GCCGTCATCAGTGATCTCCATGGTGAAGGACCTCCACCGCCAGCGGCCCATGCTCAACAACCAAACCCTTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169943.8
3UTR CCA 72 bp CTGCGGGCAAGGGTTTGGTTGTTGAGCATGGGCCGCTaGCGGTGGAGGTCCTTCACCATGGAGATCACTGAT +
Preference number: 3 (lower is better)
Translates to: LRARVWLLSMGR*RWRSFTMEITD
Trigger: ATCAGTGATCTCCATGGTGAAGGACCTCCACCGCCAGCGGCCCATGCTCAACAACCAAACCCTTGCCCGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169943.8
3UTR TCA 72 bp CCTGGTTACAGCGACACAGGAAGGTCCCATAGGAGTTaGAGCAGCGCTGCTCACATGGGGCTCCCATGTCAC +
Preference number: 3 (lower is better)
Translates to: PGYSDTGRSHRS*SSAAHMGLPCH
Trigger: GTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGCTGTAACCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169943.8
3UTR CCA 72 bp CGGTTGTTAGGTCCCAACTGGAAGCCTGGCTCACACTaGCATCGAAAAGAGCCCGGCAGGTTCACACATCGA +
Preference number: 3 (lower is better)
Translates to: RLLGPNWKPGSH*HRKEPGRFTHR
Trigger: TCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169943.8
3UTR TCA 72 bp AGAACTGCCTGTAGCGTGCTTACTAGGAGACAACTCTaGCTTCTGACACGGCCCCTGCTTCCTAGGACAGGG +
Preference number: 3 (lower is better)
Translates to: RTACSVLTRRQL*LLTRPLLPRTG
Trigger: CCCTGTCCTAGGAAGCAGGGGCCGTGTCAGAAGTCAGAGTTGTCTCCTAGTAAGCACGCTACAGGCAGTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164388.2
3UTR CCA 72 bp TTCACATCCACACAAGAGCGGTTGTTAGGTCCCAACTaGAAGCCTGGCTCACACTGGCATCGAAAAGAGCCC +
Preference number: 3 (lower is better)
Translates to: FTSTQERLLGPN*KPGSHWHRKEP
Trigger: GGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGGATGTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169943.8
3UTR CCA 72 bp GAAGGTCCCATAGGAGTTGAAGCAGCGCTGCTCACATaGGGCTCCCATGTCACACTCATTCACATCCACACA +
Preference number: 3 (lower is better)
Translates to: EGPIGVEAALLT*GSHVTLIHIHT
Trigger: TGTGTGGATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169943.8
3UTR TCA 72 bp ATTCTGAAGAATGACCTTGGCTCTGAAACCTCAGCCTaGCTGGAGAGGACCCCTTGTGTGGAACTCACCTGC +
Preference number: 3 (lower is better)
Translates to: ILKNDLGSETSA*LERTPCVELTC
Trigger: GCAGGTGAGTTCCACACAAGGGGTCCTCTCCAGTCAGGCTGAGGTTTCAGAGCCAAGGTCATTCTTCAGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
3UTR TCA 72 bp ATGGTTCCTGGGCCCAGTATCAGCCAAGCTCTTGAGTaGGGACCTGAGGTACATACTCTTCAGAACTCCCTG +
Preference number: 3 (lower is better)
Translates to: MVPGPSISQALE*GPEVHTLQNSL
Trigger: CAGGGAGTTCTGAAGAGTATGTACCTCAGGTCCTCACTCAAGAGCTTGGCTGATACTGGGCCCAGGAACCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
3UTR GCA 72 bp ATTCGGGTCCAATTTTTCGGTAACCATCAGGGCAGGTaGACTGGTAGGAGCCAGGAAGGTTATGGCAGTCCT +
Preference number: 3 (lower is better)
Translates to: IRVQFFGNHQGR*TGRSQEGYGSP
Trigger: AGGACTGCCATAACCTTCCTGGCTCCTACCAGTGCACCTGCCCTGATGGTTACCGAAAAATTGGACCCGAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169943.8
3UTR CCA 72 bp GATGCTAACCCCAAACTCCTAGCACTGACCAGAACATaGTTCCTGGGCCCAGTATCAGCCAAGCTCTTGAGT +
Preference number: 3 (lower is better)
Translates to: DANPKLLALTRT*FLGPVSAKLLS
Trigger: ACTCAAGAGCTTGGCTGATACTGGGCCCAGGAACCATGTTCTGGTCAGTGCTAGGAGTTTGGGGTTAGCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp ACACGGCCCCTGCTTCCTAGGACAGGGCTTTGGGAGCAGAGGCAGGGCAGCTCCATCGGCCTGGCTCGTTaGCACAGCGGTACTGGCAGA +
Preference number: 4 (lower is better)
Translates to: TRPLLPRTGLWEQRQGSSIGLAR*HSGTGR
Trigger: TCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGAT...GGAGCTGCCCTGCCTCTGCTCCCAAAGCCCTGTCCTAGGAAGCAGGGGCCGTGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164388.2
CDS-3UTR CCA 90 bp ACACGGCCCCTGCTTCCTAGGACAGGGCTTTGGGAGCAGAGGCAGGGCAGCTCCCTCGACAAAGGGGATTaGAGGCAGGGCAGAGGCAGC +
Preference number: 4 (lower is better)
Translates to: TRPLLPRTGLWEQRQGSSLDKGD*RQGRGS
Trigger: GCTGCCTCTGCCCTGCCTCCAATCCCCTTTGTCGAG...GGAGCTGCCCTGCCTCTGCTCCCAAAGCCCTGTCCTAGGAAGCAGGGGCCGTGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164388.2
CDS-3UTR CCA 90 bp TTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGGGGGTCCCGTCACTGGCCTaGCGAGGACCAGCATGGCGC +
Preference number: 4 (lower is better)
Translates to: LSRTVIPRPPGLLKLWEGVPSLA*RGPAWR
Trigger: GCGCCATGCTGGTCCTCGCCAGGCCAGTGACGGGAC...CCCCTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CCA 90 bp TTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGGGGCCGGGGTCCCGTCACTaGCCTGGCGAGGACCAGCAT +
Preference number: 4 (lower is better)
Translates to: LSRTVIPRPPGLLKLWEGPGSRH*PGEDQH
Trigger: ATGCTGGTCCTCGCCAGGCCAGTGACGGGACCCCGG...CCCCTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CCA 90 bp CCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGGTCCCGTCACTGGCCTaGCGAGGACCAGCATGGCGC +
Preference number: 4 (lower is better)
Translates to: PLSRTVIPRPPGLLKLWEVPSLA*RGPAWR
Trigger: GCGCCATGCTGGTCCTCGCCAGGCCAGTGACGGGAC...CTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CCA 90 bp GTCCTGACTAGGGCGACAGTCATGCAAAGCCTGGGTACACTCGTCCACATCCACGCACAGCCAGTCACCTaGGCTGGCCCCCGGCAGTGC +
Preference number: 4 (lower is better)
Translates to: VLTRATVMQSLGTLVHIHAQPVT*AGPRQC
Trigger: GCACTGCCGGGGGCCAGCCCAGGTGACTGGCTGTGC...GTGGATGTGGACGAGTGTACCCAGGCTTTGCATGACTGTCGCCCTAGTCAGGAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169943.8
CDS-3UTR TCA 90 bp TTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGGGGCAAAAGGGAGCATCCTaGGGCTGGGAGGTGGTGGGC +
Preference number: 4 (lower is better)
Translates to: LSRTVIPRPPGLLKLWEGQKGAS*GWEVVG
Trigger: GCCCACCACCTCCCAGCCTCAGGATGCTCCCTTTTG...CCCCTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000070118.14
CDS-3UTR TCA 90 bp ACACGGCCCCTGCTTCCTAGGACAGGGCTTTGGGAGCAGAGGCAGGGCAGCTCCAACCCCCATGGAAGTTaGCACAGGTTTGGGCCTCAG +
Preference number: 4 (lower is better)
Translates to: TRPLLPRTGLWEQRQGSSNPHGS*HRFGPQ
Trigger: CTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTT...GGAGCTGCCCTGCCTCTGCTCCCAAAGCCCTGTCCTAGGAAGCAGGGGCCGTGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000164388.2
CDS-3UTR TCA 90 bp ACACGGCCCCTGCTTCCTAGGACAGGGCTTTGGGAGCAGAGGCAGGGCAGCTCCGCGGTGCACAATGGATaGAGGCTGCTCTCGACAAAG +
Preference number: 4 (lower is better)
Translates to: TRPLLPRTGLWEQRQGSSAVHNG*RLLSTK
Trigger: CTTTGTCGAGAGCAGCCTTCATCCATTGTGCACCGC...GGAGCTGCCCTGCCTCTGCTCCCAAAGCCCTGTCCTAGGAAGCAGGGGCCGTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164388.2
CDS-3UTR TCA 90 bp ACACGGCCCCTGCTTCCTAGGACAGGGCTTTGGGAGCAGAGGCAGGGCAGCTCCCACTTCGCTCTGAGGTaGTGCTCATGTAGCGGTGCA +
Preference number: 4 (lower is better)
Translates to: TRPLLPRTGLWEQRQGSSHFALR*CSCSGA
Trigger: TGCACCGCTACATGAGCATCACCTCAGAGCGAAGTG...GGAGCTGCCCTGCCTCTGCTCCCAAAGCCCTGTCCTAGGAAGCAGGGGCCGTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164388.2
CDS-3UTR TCA 90 bp ACACGGCCCCTGCTTCCTAGGACAGGGCTTTGGGAGCAGAGGCAGGGCAGCTCCGAGGTTGCCTGGATCTaGAACACGTCAGCAGGCACA +
Preference number: 4 (lower is better)
Translates to: TRPLLPRTGLWEQRQGSSEVAWI*NTSAGT
Trigger: TGTGCCTGCTGACGTGTTTCAGATCCAGGCAACCTC...GGAGCTGCCCTGCCTCTGCTCCCAAAGCCCTGTCCTAGGAAGCAGGGGCCGTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164388.2
CDS-3UTR GCA 90 bp GTCCTGACTAGGGCGACAGTCATGCAAAGCCTGGGTACACTCGTCCACATCCACGCTGGCCCCCGGCAGTaGTGGCTGTCTGCATCCCAC +
Preference number: 4 (lower is better)
Translates to: VLTRATVMQSLGTLVHIHAGPRQ*WLSASH
Trigger: GTGGGATGCAGACAGCCAGCACTGCCGGGGGCCAGC...GTGGATGTGGACGAGTGTACCCAGGCTTTGCATGACTGTCGCCCTAGTCAGGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169943.8
CDS-3UTR CCA 90 bp AGAAGCCATCCCGGTGCAGCTCATAGCCCTGGTTACAGCGACACAGGAAGGTCCCAGAGAGGGGCCTGCTaGGCACAGCCAGTCACCTGG +
Preference number: 4 (lower is better)
Translates to: RSHPGAAHSPGYSDTGRSQRGAC*AQPVTW
Trigger: CCAGGTGACTGGCTGTGCCCAGCAGGCCCCTCTCTG...GGACCTTCCTGTGTCGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169943.8
CDS-3UTR TCA 90 bp TTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGGGGATCGGCCTGGCTCGTTaGCACAGCGGTACTGGCAGA +
Preference number: 4 (lower is better)
Translates to: LSRTVIPRPPGLLKLWEGIGLAR*HSGTGR
Trigger: TCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGAT...CCCCTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp ATGGTGACCATCTCCAGGTCCAGCACGTACTCCCGGGGTCCCGTCACTGGCCTGAACCCCCATGGAAGTTaGCACAGGTTTGGGCCTCAG +
Preference number: 4 (lower is better)
Translates to: MVTISRSSTYSRGPVTGLNPHGS*HRFGPQ
Trigger: CTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTT...CAGGCCAGTGACGGGACCCCGGGAGTACGTGCTGGACCTGGAGATGGTCACCAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000168330.2
CDS-3UTR CCA 90 bp TTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGGGGGCAGCGCTGCTCACATaGGGCTCCCATGTCACACTC +
Preference number: 4 (lower is better)
Translates to: LSRTVIPRPPGLLKLWEGAALLT*GSHVTL
Trigger: GAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGC...CCCCTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CCA 90 bp TTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGGGGCTCGACAAAGGGGATTaGAGGCAGGGCAGAGGCAGC +
Preference number: 4 (lower is better)
Translates to: LSRTVIPRPPGLLKLWEGLDKGD*RQGRGS
Trigger: GCTGCCTCTGCCCTGCCTCCAATCCCCTTTGTCGAG...CCCCTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CCA 90 bp ACACGGCCCCTGCTTCCTAGGACAGGGCTTTGGGAGCAGAGGCAGGGCAGCTCCTGTAGCGGTGCACAATaGATGAAGGCTGCTCTCGAC +
Preference number: 4 (lower is better)
Translates to: TRPLLPRTGLWEQRQGSSCSGAQ*MKAALD
Trigger: GTCGAGAGCAGCCTTCATCCATTGTGCACCGCTACA...GGAGCTGCCCTGCCTCTGCTCCCAAAGCCCTGTCCTAGGAAGCAGGGGCCGTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164388.2
CDS-3UTR CCA 90 bp AGAACATGGTTCCTGGGCCCAGTATCAGCCAAGCTCTTGAGTGAGGACCTGAGGCCGGGGTCCCGTCACTaGCCTGGCGAGGACCAGCAT +
Preference number: 4 (lower is better)
Translates to: RTWFLGPVSAKLLSEDLRPGSRH*PGEDQH
Trigger: ATGCTGGTCCTCGCCAGGCCAGTGACGGGACCCCGG...CCTCAGGTCCTCACTCAAGAGCTTGGCTGATACTGGGCCCAGGAACCATGTTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp CCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGATCGGCCTGGCTCGTTaGCACAGCGGTACTGGCAGA +
Preference number: 4 (lower is better)
Translates to: PLSRTVIPRPPGLLKLWEIGLAR*HSGTGR
Trigger: TCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGAT...CTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR GCA 90 bp TTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGGGGATCCTGTGGGGACGCTaGTCCCAAGAGCAACAGCAG +
Preference number: 4 (lower is better)
Translates to: LSRTVIPRPPGLLKLWEGILWGR*SQEQQQ
Trigger: CTGCTGTTGCTCTTGGGAGCAGCGTCCCCACAGGAT...CCCCTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR GCA 90 bp TTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGGGGTTGACATCCCGGCAGTaGTGGCTGTCTGCATCCCAC +
Preference number: 4 (lower is better)
Translates to: LSRTVIPRPPGLLKLWEGLTSRQ*WLSASH
Trigger: GTGGGATGCAGACAGCCAGCACTGCCGGGATGTCAA...CCCCTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR GCA 90 bp TTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGGGGGAGTTGAAGCAGCGCTaGTCACATGGGGCTCCCATG +
Preference number: 4 (lower is better)
Translates to: LSRTVIPRPPGLLKLWEGELKQR*SHGAPM
Trigger: CATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTC...CCCCTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CCA 90 bp CCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGGCAGCGCTGCTCACATaGGGCTCCCATGTCACACTC +
Preference number: 4 (lower is better)
Translates to: PLSRTVIPRPPGLLKLWEAALLT*GSHVTL
Trigger: GAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGC...CTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CCA 90 bp ACACGGCCCCTGCTTCCTAGGACAGGGCTTTGGGAGCAGAGGCAGGGCAGCTCCTGGGCCTCAGAACATTaGTGTGCACCTGTTTCACAC +
Preference number: 4 (lower is better)
Translates to: TRPLLPRTGLWEQRQGSSWASEH*CAPVSH
Trigger: GTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCA...GGAGCTGCCCTGCCTCTGCTCCCAAAGCCCTGTCCTAGGAAGCAGGGGCCGTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164388.2
CDS-3UTR CCA 90 bp CCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGCTCGACAAAGGGGATTaGAGGCAGGGCAGAGGCAGC +
Preference number: 4 (lower is better)
Translates to: PLSRTVIPRPPGLLKLWELDKGD*RQGRGS
Trigger: GCTGCCTCTGCCCTGCCTCCAATCCCCTTTGTCGAG...CTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CCA 90 bp CTGGGCCCAGTATCAGCCAAGCTCTTGAGTGAGGACCTGAGGTACATACTCTTCGTCCCGTCACTGGCCTaGCGAGGACCAGCATGGCGC +
Preference number: 4 (lower is better)
Translates to: LGPVSAKLLSEDLRYILFVPSLA*RGPAWR
Trigger: GCGCCATGCTGGTCCTCGCCAGGCCAGTGACGGGAC...GAAGAGTATGTACCTCAGGTCCTCACTCAAGAGCTTGGCTGATACTGGGCCCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CCA 90 bp AAACTCCTAGCACTGACCAGAACATGGTTCCTGGGCCCAGTATCAGCCAAGCTCGTCCCGTCACTGGCCTaGCGAGGACCAGCATGGCGC +
Preference number: 4 (lower is better)
Translates to: KLLALTRTWFLGPVSAKLVPSLA*RGPAWR
Trigger: GCGCCATGCTGGTCCTCGCCAGGCCAGTGACGGGAC...GAGCTTGGCTGATACTGGGCCCAGGAACCATGTTCTGGTCAGTGCTAGGAGTTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CCA 90 bp ATCATAGTTCCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCCGGGGTCCCGTCACTaGCCTGGCGAGGACCAGCAT +
Preference number: 4 (lower is better)
Translates to: IIVPLSRTVIPRPPGLLKPGSRH*PGEDQH
Trigger: ATGCTGGTCCTCGCCAGGCCAGTGACGGGACCCCGG...CTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGGAACTATGAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CCA 90 bp AAACTCCTAGCACTGACCAGAACATGGTTCCTGGGCCCAGTATCAGCCAAGCTCCCGGGGTCCCGTCACTaGCCTGGCGAGGACCAGCAT +
Preference number: 4 (lower is better)
Translates to: KLLALTRTWFLGPVSAKLPGSRH*PGEDQH
Trigger: ATGCTGGTCCTCGCCAGGCCAGTGACGGGACCCCGG...GAGCTTGGCTGATACTGGGCCCAGGAACCATGTTCTGGTCAGTGCTAGGAGTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp TTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGGGGAGGTCCCATAGGAGTTaGAGCAGCGCTGCTCACATG +
Preference number: 4 (lower is better)
Translates to: LSRTVIPRPPGLLKLWEGRSHRS*SSAAHM
Trigger: CATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCT...CCCCTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp TTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGGGGAACCCCCATGGAAGTTaGCACAGGTTTGGGCCTCAG +
Preference number: 4 (lower is better)
Translates to: LSRTVIPRPPGLLKLWEGNPHGS*HRFGPQ
Trigger: CTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTT...CCCCTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp TTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGGGGCACTTCGCTCTGAGGTaGTGCTCATGTAGCGGTGCA +
Preference number: 4 (lower is better)
Translates to: LSRTVIPRPPGLLKLWEGHFALR*CSCSGA
Trigger: TGCACCGCTACATGAGCATCACCTCAGAGCGAAGTG...CCCCTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp TTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGGGGGAGGTTGCCTGGATCTaGAACACGTCAGCAGGCACA +
Preference number: 4 (lower is better)
Translates to: LSRTVIPRPPGLLKLWEGEVAWI*NTSAGT
Trigger: TGTGCCTGCTGACGTGTTTCAGATCCAGGCAACCTC...CCCCTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp TTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGGGGCTCCCACAAAGACCGTaGGTCTCAGTACAGAGCTGG +
Preference number: 4 (lower is better)
Translates to: LSRTVIPRPPGLLKLWEGLPQRP*VSVQSW
Trigger: CCAGCTCTGTACTGAGACTCACGGTCTTTGTGGGAG...CCCCTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR GCA 90 bp CCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGATCCTGTGGGGACGCTaGTCCCAAGAGCAACAGCAG +
Preference number: 4 (lower is better)
Translates to: PLSRTVIPRPPGLLKLWEILWGR*SQEQQQ
Trigger: CTGCTGTTGCTCTTGGGAGCAGCGTCCCCACAGGAT...CTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR GCA 90 bp CCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGTTGACATCCCGGCAGTaGTGGCTGTCTGCATCCCAC +
Preference number: 4 (lower is better)
Translates to: PLSRTVIPRPPGLLKLWELTSRQ*WLSASH
Trigger: GTGGGATGCAGACAGCCAGCACTGCCGGGATGTCAA...CTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR GCA 90 bp TTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGGGGCTAGGGCGACAGTCATaGAAAGCCTGGGTACACTCG +
Preference number: 4 (lower is better)
Translates to: LSRTVIPRPPGLLKLWEGLGRQS*KAWVHS
Trigger: CGAGTGTACCCAGGCTTTGCATGACTGTCGCCCTAG...CCCCTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR GCA 90 bp ACACGGCCCCTGCTTCCTAGGACAGGGCTTTGGGAGCAGAGGCAGGGCAGCTCCACAATGGATGAAGGCTaGTCTCGACAAAGGGGATTG +
Preference number: 4 (lower is better)
Translates to: TRPLLPRTGLWEQRQGSSTMDEG*SRQRGL
Trigger: CAATCCCCTTTGTCGAGAGCAGCCTTCATCCATTGT...GGAGCTGCCCTGCCTCTGCTCCCAAAGCCCTGTCCTAGGAAGCAGGGGCCGTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164388.2
CDS-3UTR CCA 90 bp CCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGACATCCCGGCAGTGCTaGCTGTCTGCATCCCACTCA +
Preference number: 4 (lower is better)
Translates to: PLSRTVIPRPPGLLKLWETSRQC*LSASHS
Trigger: TGAGTGGGATGCAGACAGCCAGCACTGCCGGGATGT...CTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CCA 90 bp GATGCTGGCAATAGCGGTAACGACACTCATCTATGTCCACACATTCGGGTCCAAGCCAGTCACCTGGGCTaGCCCCCGGCAGTGCTGGCT +
Preference number: 4 (lower is better)
Translates to: DAGNSGNDTHLCPHIRVQASHLG*PPAVLA
Trigger: AGCCAGCACTGCCGGGGGCCAGCCCAGGTGACTGGC...TTGGACCCGAATGTGTGGACATAGATGAGTGTCGTTACCGCTATTGCCAGCATC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169943.8
CDS-3UTR TCA 90 bp CCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGAGGTTATGGCAGTCCTaGCTAGGGCGACAGTCATGC +
Preference number: 4 (lower is better)
Translates to: PLSRTVIPRPPGLLKLWERLWQS*LGRQSC
Trigger: GCATGACTGTCGCCCTAGTCAGGACTGCCATAACCT...CTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp CCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGAGGTCCCATAGGAGTTaGAGCAGCGCTGCTCACATG +
Preference number: 4 (lower is better)
Translates to: PLSRTVIPRPPGLLKLWERSHRS*SSAAHM
Trigger: CATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCT...CTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp CCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGAACCCCCATGGAAGTTaGCACAGGTTTGGGCCTCAG +
Preference number: 4 (lower is better)
Translates to: PLSRTVIPRPPGLLKLWENPHGS*HRFGPQ
Trigger: CTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTT...CTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp CCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGGCGGTGCACAATGGATaGAGGCTGCTCTCGACAAAG +
Preference number: 4 (lower is better)
Translates to: PLSRTVIPRPPGLLKLWEAVHNG*RLLSTK
Trigger: CTTTGTCGAGAGCAGCCTTCATCCATTGTGCACCGC...CTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp CCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGCACTTCGCTCTGAGGTaGTGCTCATGTAGCGGTGCA +
Preference number: 4 (lower is better)
Translates to: PLSRTVIPRPPGLLKLWEHFALR*CSCSGA
Trigger: TGCACCGCTACATGAGCATCACCTCAGAGCGAAGTG...CTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp CCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGGAGGTTGCCTGGATCTaGAACACGTCAGCAGGCACA +
Preference number: 4 (lower is better)
Translates to: PLSRTVIPRPPGLLKLWEEVAWI*NTSAGT
Trigger: TGTGCCTGCTGACGTGTTTCAGATCCAGGCAACCTC...CTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp CCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGCTCCCACAAAGACCGTaGGTCTCAGTACAGAGCTGG +
Preference number: 4 (lower is better)
Translates to: PLSRTVIPRPPGLLKLWELPQRP*VSVQSW
Trigger: CCAGCTCTGTACTGAGACTCACGGTCTTTGTGGGAG...CTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR GCA 90 bp CCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGGCAGTGCTGGCTGTCTaGATCCCACTCATAGCCATC +
Preference number: 4 (lower is better)
Translates to: PLSRTVIPRPPGLLKLWEAVLAV*IPLIAI
Trigger: GATGGCTATGAGTGGGATGCAGACAGCCAGCACTGC...CTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CCA 90 bp ATCATAGTTCCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCCTGAGGCTGGGAGGTaGTGGGCAGAAGTCAGGGGT +
Preference number: 4 (lower is better)
Translates to: IIVPLSRTVIPRPPGLLKPEAGR*WAEVRG
Trigger: ACCCCTGACTTCTGCCCACCACCTCCCAGCCTCAGG...CTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGGAACTATGAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000070118.14
CDS-3UTR CCA 90 bp TTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGGGGCAGTCATGCAAAGCCTaGGTACACTCGTCCACATCC +
Preference number: 4 (lower is better)
Translates to: LSRTVIPRPPGLLKLWEGQSCKA*VHSSTS
Trigger: GGATGTGGACGAGTGTACCCAGGCTTTGCATGACTG...CCCCTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CCA 90 bp TTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGGGGTCCCAACTGGAAGCCTaGCTCACACTGGCATCGAAA +
Preference number: 4 (lower is better)
Translates to: LSRTVIPRPPGLLKLWEGSQLEA*LTLASK
Trigger: TTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGA...CCCCTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
CDS-3UTR CCA 90 bp TTGGCTCTGAAACCTCAGCCTGACTGGAGAGGACCCCTTGTGTGGAACTCACCTGCAGCGCTGCTCACATaGGGCTCCCATGTCACACTC +
Preference number: 4 (lower is better)
Translates to: LALKPQPDWRGPLVWNSPAALLT*GSHVTL
Trigger: GAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGC...AGGTGAGTTCCACACAAGGGGTCCTCTCCAGTCAGGCTGAGGTTTCAGAGCCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CCA 90 bp GCACTGACCAGAACATGGTTCCTGGGCCCAGTATCAGCCAAGCTCTTGAGTGAGGCAGCGCTGCTCACATaGGGCTCCCATGTCACACTC +
Preference number: 4 (lower is better)
Translates to: ALTRTWFLGPVSAKLLSEAALLT*GSHVTL
Trigger: GAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGC...CTCACTCAAGAGCTTGGCTGATACTGGGCCCAGGAACCATGTTCTGGTCAGTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CCA 90 bp GCACTGACCAGAACATGGTTCCTGGGCCCAGTATCAGCCAAGCTCTTGAGTGAGCTCGACAAAGGGGATTaGAGGCAGGGCAGAGGCAGC +
Preference number: 4 (lower is better)
Translates to: ALTRTWFLGPVSAKLLSELDKGD*RQGRGS
Trigger: GCTGCCTCTGCCCTGCCTCCAATCCCCTTTGTCGAG...CTCACTCAAGAGCTTGGCTGATACTGGGCCCAGGAACCATGTTCTGGTCAGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CCA 90 bp TTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGGGGTGTAGCGGTGCACAATaGATGAAGGCTGCTCTCGAC +
Preference number: 4 (lower is better)
Translates to: LSRTVIPRPPGLLKLWEGCSGAQ*MKAALD
Trigger: GTCGAGAGCAGCCTTCATCCATTGTGCACCGCTACA...CCCCTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp TTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGGGGAACCCCCGTAGTGGTTaGTGCATTTCATCTCACCCT +
Preference number: 4 (lower is better)
Translates to: LSRTVIPRPPGLLKLWEGNPRSG*CISSHP
Trigger: AGGGTGAGATGAAATGCATCAACCACTACGGGGGTT...CCCCTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp CTGGGCCCAGTATCAGCCAAGCTCTTGAGTGAGGACCTGAGGTACATACTCTTCATCGGCCTGGCTCGTTaGCACAGCGGTACTGGCAGA +
Preference number: 4 (lower is better)
Translates to: LGPVSAKLLSEDLRYILFIGLAR*HSGTGR
Trigger: TCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGAT...GAAGAGTATGTACCTCAGGTCCTCACTCAAGAGCTTGGCTGATACTGGGCCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR GCA 90 bp TTGGCTCTGAAACCTCAGCCTGACTGGAGAGGACCCCTTGTGTGGAACTCACCTTTGACATCCCGGCAGTaGTGGCTGTCTGCATCCCAC +
Preference number: 4 (lower is better)
Translates to: LALKPQPDWRGPLVWNSPLTSRQ*WLSASH
Trigger: GTGGGATGCAGACAGCCAGCACTGCCGGGATGTCAA...AGGTGAGTTCCACACAAGGGGTCCTCTCCAGTCAGGCTGAGGTTTCAGAGCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR GCA 90 bp TTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGGGGATTTCATCTCACCCTTaGAAGCCTCCGGGATGGTCA +
Preference number: 4 (lower is better)
Translates to: LSRTVIPRPPGLLKLWEGISSHP*KPPGWS
Trigger: TGACCATCCCGGAGGCTTGCAAGGGTGAGATGAAAT...CCCCTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR GCA 90 bp TTGGCTCTGAAACCTCAGCCTGACTGGAGAGGACCCCTTGTGTGGAACTCACCTGAGTTGAAGCAGCGCTaGTCACATGGGGCTCCCATG +
Preference number: 4 (lower is better)
Translates to: LALKPQPDWRGPLVWNSPELKQR*SHGAPM
Trigger: CATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTC...AGGTGAGTTCCACACAAGGGGTCCTCTCCAGTCAGGCTGAGGTTTCAGAGCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR GCA 90 bp TGCTCACATGGGGCTCCCATGTCACACTCATTCACATCCACACAAGAGCGGTTGGCACTCGTTGACATCTaGAGAGAGGGGCCTGCTGGG +
Preference number: 4 (lower is better)
Translates to: CSHGAPMSHSFTSTQERLALVDI*REGPAG
Trigger: CCCAGCAGGCCCCTCTCTGCAGATGTCAACGAGTGC...CAACCGCTCTTGTGTGGATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169943.8
CDS-3UTR CCA 90 bp ATCATAGTTCCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGGCAGCGCTGCTCACATaGGGCTCCCATGTCACACTC +
Preference number: 4 (lower is better)
Translates to: IIVPLSRTVIPRPPGLLKAALLT*GSHVTL
Trigger: GAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGC...CTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGGAACTATGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CCA 90 bp TTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGGGGTGGGCCTCAGAACATTaGTGTGCACCTGTTTCACAC +
Preference number: 4 (lower is better)
Translates to: LSRTVIPRPPGLLKLWEGWASEH*CAPVSH
Trigger: GTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCA...CCCCTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CCA 90 bp CTGGGCCCAGTATCAGCCAAGCTCTTGAGTGAGGACCTGAGGTACATACTCTTCCTCGACAAAGGGGATTaGAGGCAGGGCAGAGGCAGC +
Preference number: 4 (lower is better)
Translates to: LGPVSAKLLSEDLRYILFLDKGD*RQGRGS
Trigger: GCTGCCTCTGCCCTGCCTCCAATCCCCTTTGTCGAG...GAAGAGTATGTACCTCAGGTCCTCACTCAAGAGCTTGGCTGATACTGGGCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CCA 90 bp CCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGTGTAGCGGTGCACAATaGATGAAGGCTGCTCTCGAC +
Preference number: 4 (lower is better)
Translates to: PLSRTVIPRPPGLLKLWECSGAQ*MKAALD
Trigger: GTCGAGAGCAGCCTTCATCCATTGTGCACCGCTACA...CTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp CCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGAACCCCCGTAGTGGTTaGTGCATTTCATCTCACCCT +
Preference number: 4 (lower is better)
Translates to: PLSRTVIPRPPGLLKLWENPRSG*CISSHP
Trigger: AGGGTGAGATGAAATGCATCAACCACTACGGGGGTT...CTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp TTGGCTCTGAAACCTCAGCCTGACTGGAGAGGACCCCTTGTGTGGAACTCACCTAGGTTATGGCAGTCCTaGCTAGGGCGACAGTCATGC +
Preference number: 4 (lower is better)
Translates to: LALKPQPDWRGPLVWNSPRLWQS*LGRQSC
Trigger: GCATGACTGTCGCCCTAGTCAGGACTGCCATAACCT...AGGTGAGTTCCACACAAGGGGTCCTCTCCAGTCAGGCTGAGGTTTCAGAGCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp AGAACATGGTTCCTGGGCCCAGTATCAGCCAAGCTCTTGAGTGAGGACCTGAGGAGGTTATGGCAGTCCTaGCTAGGGCGACAGTCATGC +
Preference number: 4 (lower is better)
Translates to: RTWFLGPVSAKLLSEDLRRLWQS*LGRQSC
Trigger: GCATGACTGTCGCCCTAGTCAGGACTGCCATAACCT...CCTCAGGTCCTCACTCAAGAGCTTGGCTGATACTGGGCCCAGGAACCATGTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp GCACTGACCAGAACATGGTTCCTGGGCCCAGTATCAGCCAAGCTCTTGAGTGAGAGGTCCCATAGGAGTTaGAGCAGCGCTGCTCACATG +
Preference number: 4 (lower is better)
Translates to: ALTRTWFLGPVSAKLLSERSHRS*SSAAHM
Trigger: CATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCT...CTCACTCAAGAGCTTGGCTGATACTGGGCCCAGGAACCATGTTCTGGTCAGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp TTGGCTCTGAAACCTCAGCCTGACTGGAGAGGACCCCTTGTGTGGAACTCACCTAGGTCCCATAGGAGTTaGAGCAGCGCTGCTCACATG +
Preference number: 4 (lower is better)
Translates to: LALKPQPDWRGPLVWNSPRSHRS*SSAAHM
Trigger: CATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCT...AGGTGAGTTCCACACAAGGGGTCCTCTCCAGTCAGGCTGAGGTTTCAGAGCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp AGAACATGGTTCCTGGGCCCAGTATCAGCCAAGCTCTTGAGTGAGGACCTGAGGAGGTCCCATAGGAGTTaGAGCAGCGCTGCTCACATG +
Preference number: 4 (lower is better)
Translates to: RTWFLGPVSAKLLSEDLRRSHRS*SSAAHM
Trigger: CATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCT...CCTCAGGTCCTCACTCAAGAGCTTGGCTGATACTGGGCCCAGGAACCATGTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp GCACTGACCAGAACATGGTTCCTGGGCCCAGTATCAGCCAAGCTCTTGAGTGAGGCGGTGCACAATGGATaGAGGCTGCTCTCGACAAAG +
Preference number: 4 (lower is better)
Translates to: ALTRTWFLGPVSAKLLSEAVHNG*RLLSTK
Trigger: CTTTGTCGAGAGCAGCCTTCATCCATTGTGCACCGC...CTCACTCAAGAGCTTGGCTGATACTGGGCCCAGGAACCATGTTCTGGTCAGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR GCA 90 bp ATCATAGTTCCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGATCCTGTGGGGACGCTaGTCCCAAGAGCAACAGCAG +
Preference number: 4 (lower is better)
Translates to: IIVPLSRTVIPRPPGLLKILWGR*SQEQQQ
Trigger: CTGCTGTTGCTCTTGGGAGCAGCGTCCCCACAGGAT...CTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGGAACTATGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR GCA 90 bp CTGGGCCCAGTATCAGCCAAGCTCTTGAGTGAGGACCTGAGGTACATACTCTTCTTGACATCCCGGCAGTaGTGGCTGTCTGCATCCCAC +
Preference number: 4 (lower is better)
Translates to: LGPVSAKLLSEDLRYILFLTSRQ*WLSASH
Trigger: GTGGGATGCAGACAGCCAGCACTGCCGGGATGTCAA...GAAGAGTATGTACCTCAGGTCCTCACTCAAGAGCTTGGCTGATACTGGGCCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR GCA 90 bp AGAACATGGTTCCTGGGCCCAGTATCAGCCAAGCTCTTGAGTGAGGACCTGAGGCTAGGGCGACAGTCATaGAAAGCCTGGGTACACTCG +
Preference number: 4 (lower is better)
Translates to: RTWFLGPVSAKLLSEDLRLGRQS*KAWVHS
Trigger: CGAGTGTACCCAGGCTTTGCATGACTGTCGCCCTAG...CCTCAGGTCCTCACTCAAGAGCTTGGCTGATACTGGGCCCAGGAACCATGTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR GCA 90 bp ATCATAGTTCCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGGAGTTGAAGCAGCGCTaGTCACATGGGGCTCCCATG +
Preference number: 4 (lower is better)
Translates to: IIVPLSRTVIPRPPGLLKELKQR*SHGAPM
Trigger: CATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTC...CTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGGAACTATGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR GCA 90 bp TTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGGGGACAATGGATGAAGGCTaGTCTCGACAAAGGGGATTG +
Preference number: 4 (lower is better)
Translates to: LSRTVIPRPPGLLKLWEGTMDEG*SRQRGL
Trigger: CAATCCCCTTTGTCGAGAGCAGCCTTCATCCATTGT...CCCCTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CCA 90 bp CTGGGCCCAGTATCAGCCAAGCTCTTGAGTGAGGACCTGAGGTACATACTCTTCACATCCCGGCAGTGCTaGCTGTCTGCATCCCACTCA +
Preference number: 4 (lower is better)
Translates to: LGPVSAKLLSEDLRYILFTSRQC*LSASHS
Trigger: TGAGTGGGATGCAGACAGCCAGCACTGCCGGGATGT...GAAGAGTATGTACCTCAGGTCCTCACTCAAGAGCTTGGCTGATACTGGGCCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CCA 90 bp ATCATAGTTCCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGACATCCCGGCAGTGCTaGCTGTCTGCATCCCACTCA +
Preference number: 4 (lower is better)
Translates to: IIVPLSRTVIPRPPGLLKTSRQC*LSASHS
Trigger: TGAGTGGGATGCAGACAGCCAGCACTGCCGGGATGT...CTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGGAACTATGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CCA 90 bp AAACTCCTAGCACTGACCAGAACATGGTTCCTGGGCCCAGTATCAGCCAAGCTCACATCCCGGCAGTGCTaGCTGTCTGCATCCCACTCA +
Preference number: 4 (lower is better)
Translates to: KLLALTRTWFLGPVSAKLTSRQC*LSASHS
Trigger: TGAGTGGGATGCAGACAGCCAGCACTGCCGGGATGT...GAGCTTGGCTGATACTGGGCCCAGGAACCATGTTCTGGTCAGTGCTAGGAGTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp ATCATAGTTCCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGAGGTTATGGCAGTCCTaGCTAGGGCGACAGTCATGC +
Preference number: 4 (lower is better)
Translates to: IIVPLSRTVIPRPPGLLKRLWQS*LGRQSC
Trigger: GCATGACTGTCGCCCTAGTCAGGACTGCCATAACCT...CTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGGAACTATGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp ATCATAGTTCCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGAGGTCCCATAGGAGTTaGAGCAGCGCTGCTCACATG +
Preference number: 4 (lower is better)
Translates to: IIVPLSRTVIPRPPGLLKRSHRS*SSAAHM
Trigger: CATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCT...CTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGGAACTATGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp AAACTCCTAGCACTGACCAGAACATGGTTCCTGGGCCCAGTATCAGCCAAGCTCAACCCCCATGGAAGTTaGCACAGGTTTGGGCCTCAG +
Preference number: 4 (lower is better)
Translates to: KLLALTRTWFLGPVSAKLNPHGS*HRFGPQ
Trigger: CTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTT...GAGCTTGGCTGATACTGGGCCCAGGAACCATGTTCTGGTCAGTGCTAGGAGTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp ATCATAGTTCCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGGCGGTGCACAATGGATaGAGGCTGCTCTCGACAAAG +
Preference number: 4 (lower is better)
Translates to: IIVPLSRTVIPRPPGLLKAVHNG*RLLSTK
Trigger: CTTTGTCGAGAGCAGCCTTCATCCATTGTGCACCGC...CTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGGAACTATGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp CTGGGCCCAGTATCAGCCAAGCTCTTGAGTGAGGACCTGAGGTACATACTCTTCGCGGTGCACAATGGATaGAGGCTGCTCTCGACAAAG +
Preference number: 4 (lower is better)
Translates to: LGPVSAKLLSEDLRYILFAVHNG*RLLSTK
Trigger: CTTTGTCGAGAGCAGCCTTCATCCATTGTGCACCGC...GAAGAGTATGTACCTCAGGTCCTCACTCAAGAGCTTGGCTGATACTGGGCCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp ATCATAGTTCCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCACTTCGCTCTGAGGTaGTGCTCATGTAGCGGTGCA +
Preference number: 4 (lower is better)
Translates to: IIVPLSRTVIPRPPGLLKHFALR*CSCSGA
Trigger: TGCACCGCTACATGAGCATCACCTCAGAGCGAAGTG...CTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGGAACTATGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp AAACTCCTAGCACTGACCAGAACATGGTTCCTGGGCCCAGTATCAGCCAAGCTCCACTTCGCTCTGAGGTaGTGCTCATGTAGCGGTGCA +
Preference number: 4 (lower is better)
Translates to: KLLALTRTWFLGPVSAKLHFALR*CSCSGA
Trigger: TGCACCGCTACATGAGCATCACCTCAGAGCGAAGTG...GAGCTTGGCTGATACTGGGCCCAGGAACCATGTTCTGGTCAGTGCTAGGAGTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp CTGGGCCCAGTATCAGCCAAGCTCTTGAGTGAGGACCTGAGGTACATACTCTTCCACTTCGCTCTGAGGTaGTGCTCATGTAGCGGTGCA +
Preference number: 4 (lower is better)
Translates to: LGPVSAKLLSEDLRYILFHFALR*CSCSGA
Trigger: TGCACCGCTACATGAGCATCACCTCAGAGCGAAGTG...GAAGAGTATGTACCTCAGGTCCTCACTCAAGAGCTTGGCTGATACTGGGCCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp CTGGGCCCAGTATCAGCCAAGCTCTTGAGTGAGGACCTGAGGTACATACTCTTCGAGGTTGCCTGGATCTaGAACACGTCAGCAGGCACA +
Preference number: 4 (lower is better)
Translates to: LGPVSAKLLSEDLRYILFEVAWI*NTSAGT
Trigger: TGTGCCTGCTGACGTGTTTCAGATCCAGGCAACCTC...GAAGAGTATGTACCTCAGGTCCTCACTCAAGAGCTTGGCTGATACTGGGCCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp ATCATAGTTCCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTCCCACAAAGACCGTaGGTCTCAGTACAGAGCTGG +
Preference number: 4 (lower is better)
Translates to: IIVPLSRTVIPRPPGLLKLPQRP*VSVQSW
Trigger: CCAGCTCTGTACTGAGACTCACGGTCTTTGTGGGAG...CTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGGAACTATGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR GCA 90 bp ATCATAGTTCCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTAGGGCGACAGTCATaGAAAGCCTGGGTACACTCG +
Preference number: 4 (lower is better)
Translates to: IIVPLSRTVIPRPPGLLKLGRQS*KAWVHS
Trigger: CGAGTGTACCCAGGCTTTGCATGACTGTCGCCCTAG...CTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGGAACTATGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR GCA 90 bp CTGGGCCCAGTATCAGCCAAGCTCTTGAGTGAGGACCTGAGGTACATACTCTTCCTAGGGCGACAGTCATaGAAAGCCTGGGTACACTCG +
Preference number: 4 (lower is better)
Translates to: LGPVSAKLLSEDLRYILFLGRQS*KAWVHS
Trigger: CGAGTGTACCCAGGCTTTGCATGACTGTCGCCCTAG...GAAGAGTATGTACCTCAGGTCCTCACTCAAGAGCTTGGCTGATACTGGGCCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR GCA 90 bp CCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGACAATGGATGAAGGCTaGTCTCGACAAAGGGGATTG +
Preference number: 4 (lower is better)
Translates to: PLSRTVIPRPPGLLKLWETMDEG*SRQRGL
Trigger: CAATCCCCTTTGTCGAGAGCAGCCTTCATCCATTGT...CTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CCA 90 bp GCACTGACCAGAACATGGTTCCTGGGCCCAGTATCAGCCAAGCTCTTGAGTGAGCAGTCATGCAAAGCCTaGGTACACTCGTCCACATCC +
Preference number: 4 (lower is better)
Translates to: ALTRTWFLGPVSAKLLSEQSCKA*VHSSTS
Trigger: GGATGTGGACGAGTGTACCCAGGCTTTGCATGACTG...CTCACTCAAGAGCTTGGCTGATACTGGGCCCAGGAACCATGTTCTGGTCAGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CCA 90 bp TTGGCTCTGAAACCTCAGCCTGACTGGAGAGGACCCCTTGTGTGGAACTCACCTTGTAGCGGTGCACAATaGATGAAGGCTGCTCTCGAC +
Preference number: 4 (lower is better)
Translates to: LALKPQPDWRGPLVWNSPCSGAQ*MKAALD
Trigger: GTCGAGAGCAGCCTTCATCCATTGTGCACCGCTACA...AGGTGAGTTCCACACAAGGGGTCCTCTCCAGTCAGGCTGAGGTTTCAGAGCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
3UTR CAA 72 bp CCCATGTCACACTCATTCACATCCACACAAGAGCGGTaGTTAGGTCCCAACTGGAAGCCTGGCTCACACTGG +
Preference number: 4 (lower is better)
Translates to: PMSHSFTSTQER*LGPNWKPGSHW
Trigger: CCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGGATGTGAATGAGTGTGACATGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169943.8
CDS-3UTR TCA 90 bp GCACTGACCAGAACATGGTTCCTGGGCCCAGTATCAGCCAAGCTCTTGAGTGAGAACCCCCGTAGTGGTTaGTGCATTTCATCTCACCCT +
Preference number: 4 (lower is better)
Translates to: ALTRTWFLGPVSAKLLSENPRSG*CISSHP
Trigger: AGGGTGAGATGAAATGCATCAACCACTACGGGGGTT...CTCACTCAAGAGCTTGGCTGATACTGGGCCCAGGAACCATGTTCTGGTCAGTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR GCA 90 bp GATGCTGGCAATAGCGGTAACGACACTCATCTATGTCCACACATTCGGGTCCAAATCCTGTGGGGACGCTaGTCCCAAGAGCAACAGCAG +
Preference number: 4 (lower is better)
Translates to: DAGNSGNDTHLCPHIRVQILWGR*SQEQQQ
Trigger: CTGCTGTTGCTCTTGGGAGCAGCGTCCCCACAGGAT...TTGGACCCGAATGTGTGGACATAGATGAGTGTCGTTACCGCTATTGCCAGCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169943.8
CDS-3UTR GCA 90 bp AGAACATGGTTCCTGGGCCCAGTATCAGCCAAGCTCTTGAGTGAGGACCTGAGGATTTCATCTCACCCTTaGAAGCCTCCGGGATGGTCA +
Preference number: 4 (lower is better)
Translates to: RTWFLGPVSAKLLSEDLRISSHP*KPPGWS
Trigger: TGACCATCCCGGAGGCTTGCAAGGGTGAGATGAAAT...CCTCAGGTCCTCACTCAAGAGCTTGGCTGATACTGGGCCCAGGAACCATGTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CCA 90 bp CTGGGCCCAGTATCAGCCAAGCTCTTGAGTGAGGACCTGAGGTACATACTCTTCCAGTCATGCAAAGCCTaGGTACACTCGTCCACATCC +
Preference number: 4 (lower is better)
Translates to: LGPVSAKLLSEDLRYILFQSCKA*VHSSTS
Trigger: GGATGTGGACGAGTGTACCCAGGCTTTGCATGACTG...GAAGAGTATGTACCTCAGGTCCTCACTCAAGAGCTTGGCTGATACTGGGCCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CCA 90 bp ATCATAGTTCCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGTCCCAACTGGAAGCCTaGCTCACACTGGCATCGAAA +
Preference number: 4 (lower is better)
Translates to: IIVPLSRTVIPRPPGLLKSQLEA*LTLASK
Trigger: TTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGA...CTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGGAACTATGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
CDS-3UTR CCA 90 bp GCACTGACCAGAACATGGTTCCTGGGCCCAGTATCAGCCAAGCTCTTGAGTGAGTGGGCCTCAGAACATTaGTGTGCACCTGTTTCACAC +
Preference number: 4 (lower is better)
Translates to: ALTRTWFLGPVSAKLLSEWASEH*CAPVSH
Trigger: GTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCA...CTCACTCAAGAGCTTGGCTGATACTGGGCCCAGGAACCATGTTCTGGTCAGTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CCA 90 bp CGTCACTGGCCTGGCGAGGACCAGCATGGCGCTGACATTGTTGATTTGCCTAATTGGGCCTCAGAACATTaGTGTGCACCTGTTTCACAC +
Preference number: 4 (lower is better)
Translates to: RHWPGEDQHGADIVDLPNWASEH*CAPVSH
Trigger: GTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCA...ATTAGGCAAATCAACAATGTCAGCGCCATGCTGGTCCTCGCCAGGCCAGTGACG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168330.2
CDS-3UTR CCA 90 bp AGAACATGGTTCCTGGGCCCAGTATCAGCCAAGCTCTTGAGTGAGGACCTGAGGTGGGCCTCAGAACATTaGTGTGCACCTGTTTCACAC +
Preference number: 4 (lower is better)
Translates to: RTWFLGPVSAKLLSEDLRWASEH*CAPVSH
Trigger: GTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCA...CCTCAGGTCCTCACTCAAGAGCTTGGCTGATACTGGGCCCAGGAACCATGTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CCA 90 bp ATCATAGTTCCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGTGTAGCGGTGCACAATaGATGAAGGCTGCTCTCGAC +
Preference number: 4 (lower is better)
Translates to: IIVPLSRTVIPRPPGLLKCSGAQ*MKAALD
Trigger: GTCGAGAGCAGCCTTCATCCATTGTGCACCGCTACA...CTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGGAACTATGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp ATCATAGTTCCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGAACCCCCGTAGTGGTTaGTGCATTTCATCTCACCCT +
Preference number: 4 (lower is better)
Translates to: IIVPLSRTVIPRPPGLLKNPRSG*CISSHP
Trigger: AGGGTGAGATGAAATGCATCAACCACTACGGGGGTT...CTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGGAACTATGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp TGTTTCCAGAACGGATCTGAAAGGCATTGTAGGCACCAGGGTAGACAGAGGTTGCACTTCGCTCTGAGGTaGTGCTCATGTAGCGGTGCA +
Preference number: 4 (lower is better)
Translates to: CFQNGSERHCRHQGRQRLHFALR*CSCSGA
Trigger: TGCACCGCTACATGAGCATCACCTCAGAGCGAAGTG...CAACCTCTGTCTACCCTGGTGCCTACAATGCCTTTCAGATCCGTTCTGGAAACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168330.2
CDS-3UTR GCA 90 bp ATCATAGTTCCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGATTTCATCTCACCCTTaGAAGCCTCCGGGATGGTCA +
Preference number: 4 (lower is better)
Translates to: IIVPLSRTVIPRPPGLLKISSHP*KPPGWS
Trigger: TGACCATCCCGGAGGCTTGCAAGGGTGAGATGAAAT...CTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGGAACTATGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR GCA 90 bp TTGGCTCTGAAACCTCAGCCTGACTGGAGAGGACCCCTTGTGTGGAACTCACCTACAATGGATGAAGGCTaGTCTCGACAAAGGGGATTG +
Preference number: 4 (lower is better)
Translates to: LALKPQPDWRGPLVWNSPTMDEG*SRQRGL
Trigger: CAATCCCCTTTGTCGAGAGCAGCCTTCATCCATTGT...AGGTGAGTTCCACACAAGGGGTCCTCTCCAGTCAGGCTGAGGTTTCAGAGCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CCA 90 bp ATCATAGTTCCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGTGGGCCTCAGAACATTaGTGTGCACCTGTTTCACAC +
Preference number: 4 (lower is better)
Translates to: IIVPLSRTVIPRPPGLLKWASEH*CAPVSH
Trigger: GTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCA...CTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGGAACTATGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR GCA 90 bp CTGGGCCCAGTATCAGCCAAGCTCTTGAGTGAGGACCTGAGGTACATACTCTTCACAATGGATGAAGGCTaGTCTCGACAAAGGGGATTG +
Preference number: 4 (lower is better)
Translates to: LGPVSAKLLSEDLRYILFTMDEG*SRQRGL
Trigger: CAATCCCCTTTGTCGAGAGCAGCCTTCATCCATTGT...GAAGAGTATGTACCTCAGGTCCTCACTCAAGAGCTTGGCTGATACTGGGCCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp CAGCCAGGACTCCTTCTTTCTCCCTTTATTGTCCTTCACATCATAGTTCCTTTAATCGGCCTGGCTCGTTaGCACAGCGGTACTGGCAGA +
Preference number: 4 (lower is better)
Translates to: QPGLLLSPFIVLHIIVPLIGLAR*HSGTGR
Trigger: TCTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGAT...TAAAGGAACTATGATGTGAAGGACAATAAAGGGAGAAAGAAGGAGTCCTGGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
3UTR CAA 72 bp AGAACATGGTTCCTGGGCCCAGTATCAGCCAAGCTCTaGAGTGAGGACCTGAGGTACATACTCTTCAGAACT +
Preference number: 4 (lower is better)
Translates to: RTWFLGPVSAKL*SEDLRYILFRT
Trigger: AGTTCTGAAGAGTATGTACCTCAGGTCCTCACTCAAGAGCTTGGCTGATACTGGGCCCAGGAACCATGTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp ACCCTAAATATGGATGGCTGGATAATAGATAAACACTCCTTAGGGGCTGGGAATAGGTTATGGCAGTCCTaGCTAGGGCGACAGTCATGC +
Preference number: 4 (lower is better)
Translates to: TLNMDGWIIDKHSLGAGNRLWQS*LGRQSC
Trigger: GCATGACTGTCGCCCTAGTCAGGACTGCCATAACCT...ATTCCCAGCCCCTAAGGAGTGTTTATCTATTATCCAGCCATCCATATTTAGGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp ACCCTAAATATGGATGGCTGGATAATAGATAAACACTCCTTAGGGGCTGGGAATAACCCCCATGGAAGTTaGCACAGGTTTGGGCCTCAG +
Preference number: 4 (lower is better)
Translates to: TLNMDGWIIDKHSLGAGNNPHGS*HRFGPQ
Trigger: CTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTT...ATTCCCAGCCCCTAAGGAGTGTTTATCTATTATCCAGCCATCCATATTTAGGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp CAGCCAGGACTCCTTCTTTCTCCCTTTATTGTCCTTCACATCATAGTTCCTTTAGCGGTGCACAATGGATaGAGGCTGCTCTCGACAAAG +
Preference number: 4 (lower is better)
Translates to: QPGLLLSPFIVLHIIVPLAVHNG*RLLSTK
Trigger: CTTTGTCGAGAGCAGCCTTCATCCATTGTGCACCGC...TAAAGGAACTATGATGTGAAGGACAATAAAGGGAGAAAGAAGGAGTCCTGGCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp ACCCTAAATATGGATGGCTGGATAATAGATAAACACTCCTTAGGGGCTGGGAATCACTTCGCTCTGAGGTaGTGCTCATGTAGCGGTGCA +
Preference number: 4 (lower is better)
Translates to: TLNMDGWIIDKHSLGAGNHFALR*CSCSGA
Trigger: TGCACCGCTACATGAGCATCACCTCAGAGCGAAGTG...ATTCCCAGCCCCTAAGGAGTGTTTATCTATTATCCAGCCATCCATATTTAGGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp CAGCCAGGACTCCTTCTTTCTCCCTTTATTGTCCTTCACATCATAGTTCCTTTAGAGGTTGCCTGGATCTaGAACACGTCAGCAGGCACA +
Preference number: 4 (lower is better)
Translates to: QPGLLLSPFIVLHIIVPLEVAWI*NTSAGT
Trigger: TGTGCCTGCTGACGTGTTTCAGATCCAGGCAACCTC...TAAAGGAACTATGATGTGAAGGACAATAAAGGGAGAAAGAAGGAGTCCTGGCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp ACCCTAAATATGGATGGCTGGATAATAGATAAACACTCCTTAGGGGCTGGGAATGAGGTTGCCTGGATCTaGAACACGTCAGCAGGCACA +
Preference number: 4 (lower is better)
Translates to: TLNMDGWIIDKHSLGAGNEVAWI*NTSAGT
Trigger: TGTGCCTGCTGACGTGTTTCAGATCCAGGCAACCTC...ATTCCCAGCCCCTAAGGAGTGTTTATCTATTATCCAGCCATCCATATTTAGGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR TCA 90 bp ACCCTAAATATGGATGGCTGGATAATAGATAAACACTCCTTAGGGGCTGGGAATCTCCCACAAAGACCGTaGGTCTCAGTACAGAGCTGG +
Preference number: 4 (lower is better)
Translates to: TLNMDGWIIDKHSLGAGNLPQRP*VSVQSW
Trigger: CCAGCTCTGTACTGAGACTCACGGTCTTTGTGGGAG...ATTCCCAGCCCCTAAGGAGTGTTTATCTATTATCCAGCCATCCATATTTAGGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CCA 90 bp CAGCCAGGACTCCTTCTTTCTCCCTTTATTGTCCTTCACATCATAGTTCCTTTACAGTCATGCAAAGCCTaGGTACACTCGTCCACATCC +
Preference number: 4 (lower is better)
Translates to: QPGLLLSPFIVLHIIVPLQSCKA*VHSSTS
Trigger: GGATGTGGACGAGTGTACCCAGGCTTTGCATGACTG...TAAAGGAACTATGATGTGAAGGACAATAAAGGGAGAAAGAAGGAGTCCTGGCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CCA 90 bp ACCCTAAATATGGATGGCTGGATAATAGATAAACACTCCTTAGGGGCTGGGAATTCCCAACTGGAAGCCTaGCTCACACTGGCATCGAAA +
Preference number: 4 (lower is better)
Translates to: TLNMDGWIIDKHSLGAGNSQLEA*LTLASK
Trigger: TTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGA...ATTCCCAGCCCCTAAGGAGTGTTTATCTATTATCCAGCCATCCATATTTAGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
CDS-3UTR GCA 90 bp CAGCCAGGACTCCTTCTTTCTCCCTTTATTGTCCTTCACATCATAGTTCCTTTAATTTCATCTCACCCTTaGAAGCCTCCGGGATGGTCA +
Preference number: 4 (lower is better)
Translates to: QPGLLLSPFIVLHIIVPLISSHP*KPPGWS
Trigger: TGACCATCCCGGAGGCTTGCAAGGGTGAGATGAAAT...TAAAGGAACTATGATGTGAAGGACAATAAAGGGAGAAAGAAGGAGTCCTGGCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CCA 90 bp ACCCTAAATATGGATGGCTGGATAATAGATAAACACTCCTTAGGGGCTGGGAATTGGGCCTCAGAACATTaGTGTGCACCTGTTTCACAC +
Preference number: 4 (lower is better)
Translates to: TLNMDGWIIDKHSLGAGNWASEH*CAPVSH
Trigger: GTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCA...ATTCCCAGCCCCTAAGGAGTGTTTATCTATTATCCAGCCATCCATATTTAGGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CAA 90 bp ACACGGCCCCTGCTTCCTAGGACAGGGCTTTGGGAGCAGAGGCAGGGCAGCTCCAATCGGCCTGGCTCGTaGACACAGCGGTACTGGCAG +
Preference number: 5 (lower is better)
Translates to: TRPLLPRTGLWEQRQGSSNRPGS*TQRYWQ
Trigger: CTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATT...GGAGCTGCCCTGCCTCTGCTCCCAAAGCCCTGTCCTAGGAAGCAGGGGCCGTGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164388.2
CDS-3UTR CAA 90 bp ACACGGCCCCTGCTTCCTAGGACAGGGCTTTGGGAGCAGAGGCAGGGCAGCTCCTCTCGACAAAGGGGATaGGAGGCAGGGCAGAGGCAG +
Preference number: 5 (lower is better)
Translates to: TRPLLPRTGLWEQRQGSSSRQRG*EAGQRQ
Trigger: CTGCCTCTGCCCTGCCTCCAATCCCCTTTGTCGAGA...GGAGCTGCCCTGCCTCTGCTCCCAAAGCCCTGTCCTAGGAAGCAGGGGCCGTGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164388.2
CDS-3UTR CAA 90 bp TTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGGGGGCAAGGGTTTGGTTGTaGAGCATGGGCCGCTGGCGG +
Preference number: 5 (lower is better)
Translates to: LSRTVIPRPPGLLKLWEGARVWL*SMGRWR
Trigger: CCGCCAGCGGCCCATGCTCAACAACCAAACCCTTGC...CCCCTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CAA 90 bp TTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGGGGATGGTCAGGCACTCGTaGACATCCCGGCAGTGCTGG +
Preference number: 5 (lower is better)
Translates to: LSRTVIPRPPGLLKLWEGMVRHS*TSRQCW
Trigger: CCAGCACTGCCGGGATGTCAACGAGTGCCTGACCAT...CCCCTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CAA 90 bp CCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGGCAAGGGTTTGGTTGTaGAGCATGGGCCGCTGGCGG +
Preference number: 5 (lower is better)
Translates to: PLSRTVIPRPPGLLKLWEARVWL*SMGRWR
Trigger: CCGCCAGCGGCCCATGCTCAACAACCAAACCCTTGC...CTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CAA 90 bp TTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGGGGAATCGGCCTGGCTCGTaGACACAGCGGTACTGGCAG +
Preference number: 5 (lower is better)
Translates to: LSRTVIPRPPGLLKLWEGNRPGS*TQRYWQ
Trigger: CTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATT...CCCCTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CAA 90 bp TTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGGGGTCTCGACAAAGGGGATaGGAGGCAGGGCAGAGGCAG +
Preference number: 5 (lower is better)
Translates to: LSRTVIPRPPGLLKLWEGSRQRG*EAGQRQ
Trigger: CTGCCTCTGCCCTGCCTCCAATCCCCTTTGTCGAGA...CCCCTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CAA 90 bp ACACGGCCCCTGCTTCCTAGGACAGGGCTTTGGGAGCAGAGGCAGGGCAGCTCCCAGGGTAGACAGAGGTaGCCTGGATCTGAAACACGT +
Preference number: 5 (lower is better)
Translates to: TRPLLPRTGLWEQRQGSSQGRQR*PGSETR
Trigger: ACGTGTTTCAGATCCAGGCAACCTCTGTCTACCCTG...GGAGCTGCCCTGCCTCTGCTCCCAAAGCCCTGTCCTAGGAAGCAGGGGCCGTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164388.2
CDS-3UTR CAA 90 bp CCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGATGGTCAGGCACTCGTaGACATCCCGGCAGTGCTGG +
Preference number: 5 (lower is better)
Translates to: PLSRTVIPRPPGLLKLWEMVRHS*TSRQCW
Trigger: CCAGCACTGCCGGGATGTCAACGAGTGCCTGACCAT...CTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CAA 90 bp CCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGAATCGGCCTGGCTCGTaGACACAGCGGTACTGGCAG +
Preference number: 5 (lower is better)
Translates to: PLSRTVIPRPPGLLKLWENRPGS*TQRYWQ
Trigger: CTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATT...CTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CAA 90 bp CCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGTCTCGACAAAGGGGATaGGAGGCAGGGCAGAGGCAG +
Preference number: 5 (lower is better)
Translates to: PLSRTVIPRPPGLLKLWESRQRG*EAGQRQ
Trigger: CTGCCTCTGCCCTGCCTCCAATCCCCTTTGTCGAGA...CTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CAA 90 bp GCACTGACCAGAACATGGTTCCTGGGCCCAGTATCAGCCAAGCTCTTGAGTGAGGCAAGGGTTTGGTTGTaGAGCATGGGCCGCTGGCGG +
Preference number: 5 (lower is better)
Translates to: ALTRTWFLGPVSAKLLSEARVWL*SMGRWR
Trigger: CCGCCAGCGGCCCATGCTCAACAACCAAACCCTTGC...CTCACTCAAGAGCTTGGCTGATACTGGGCCCAGGAACCATGTTCTGGTCAGTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS TCA 90 bp CTCTCGACAAAGGGGATTGGAGGCAGGGCAGAGGCAGCGGTTGTCTaGCACTTGGACATAGGGCTCCACACAACGGTTGGTGTCCACACA +
Preference number: 5 (lower is better)
Translates to: LSTKGIGGRAEAAVV*HLDIGLHTTVGVHT
Trigger: TGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAACCGCTGCCTCTGCCCTGCCTCCAATCCCCTTTGTCGAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000070118.14
ENSMUST00000164388.2
ENSMUST00000165485.8
ENSMUST00000166253.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS GCA 90 bp GGTACTGGCAGAGGTAACTGGAGTAGCCGCACTCATCGATATCGCTaGAGGAGAAGCCATCCCGGTGCAGCTCATAGCCCTGGTTACAGC +
Preference number: 5 (lower is better)
Translates to: GTGRGNWSSRTHRYR*RRSHPGAAHSPGYS
Trigger: GCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCGATATCGATGAGTGCGGCTACTCCAGTTACCTCTGCCAGTACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166253.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000167827.2
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CAA 90 bp ATCATAGTTCCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGGCAAGGGTTTGGTTGTaGAGCATGGGCCGCTGGCGG +
Preference number: 5 (lower is better)
Translates to: IIVPLSRTVIPRPPGLLKARVWL*SMGRWR
Trigger: CCGCCAGCGGCCCATGCTCAACAACCAAACCCTTGC...CTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGGAACTATGAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CAA 90 bp GCACTGACCAGAACATGGTTCCTGGGCCCAGTATCAGCCAAGCTCTTGAGTGAGTCTCGACAAAGGGGATaGGAGGCAGGGCAGAGGCAG +
Preference number: 5 (lower is better)
Translates to: ALTRTWFLGPVSAKLLSESRQRG*EAGQRQ
Trigger: CTGCCTCTGCCCTGCCTCCAATCCCCTTTGTCGAGA...CTCACTCAAGAGCTTGGCTGATACTGGGCCCAGGAACCATGTTCTGGTCAGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CAA 90 bp TTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGGGGCAGGGTAGACAGAGGTaGCCTGGATCTGAAACACGT +
Preference number: 5 (lower is better)
Translates to: LSRTVIPRPPGLLKLWEGQGRQR*PGSETR
Trigger: ACGTGTTTCAGATCCAGGCAACCTCTGTCTACCCTG...CCCCTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CAA 90 bp TTGTTGAGCATGGGCCGCTGGCGGTGGAGGTCCTTCACCATGGAGATCACTGATATGGTCAGGCACTCGTaGACATCTGCAGAGAGGGGC +
Preference number: 5 (lower is better)
Translates to: LLSMGRWRWRSFTMEITDMVRHS*TSAERG
Trigger: GCCCCTCTCTGCAGATGTCAACGAGTGCCTGACCAT...ATCAGTGATCTCCATGGTGAAGGACCTCCACCGCCAGCGGCCCATGCTCAACAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169943.8
CDS CCA 90 bp GTCAATATCTTGGCAGAGCCTTGTAGCCAGCAGCTGGTAGCCTTGTaGGCAGTGACAGGAGAATCGGCCTGGCTCGTTGACACAGCGGTA +
Preference number: 5 (lower is better)
Translates to: VNILAEPCSQQLVAL*AVTGESAWLVDTAV
Trigger: TACCGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAGATATTGAC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000070118.14
ENSMUST00000164388.2
ENSMUST00000165485.8
ENSMUST00000166253.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS CCA 90 bp GCGACACAGGAAGGTCCCATAGGAGTTGAAGCAGCGCTGCTCACATaGGGCTCCCATGTCACACTCATTCACATCCACACATTCGGGTCC +
Preference number: 5 (lower is better)
Translates to: ATQEGPIGVEAALLT*GSHVTLIHIHTFGS
Trigger: GGACCCGAATGTGTGGATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236518.2
CDS-3UTR CAA 90 bp ATCATAGTTCCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGATGGTCAGGCACTCGTaGACATCCCGGCAGTGCTGG +
Preference number: 5 (lower is better)
Translates to: IIVPLSRTVIPRPPGLLKMVRHS*TSRQCW
Trigger: CCAGCACTGCCGGGATGTCAACGAGTGCCTGACCAT...CTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGGAACTATGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CAA 90 bp CTGGGCCCAGTATCAGCCAAGCTCTTGAGTGAGGACCTGAGGTACATACTCTTCATGGTCAGGCACTCGTaGACATCCCGGCAGTGCTGG +
Preference number: 5 (lower is better)
Translates to: LGPVSAKLLSEDLRYILFMVRHS*TSRQCW
Trigger: CCAGCACTGCCGGGATGTCAACGAGTGCCTGACCAT...GAAGAGTATGTACCTCAGGTCCTCACTCAAGAGCTTGGCTGATACTGGGCCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CAA 90 bp ATCATAGTTCCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGAATCGGCCTGGCTCGTaGACACAGCGGTACTGGCAG +
Preference number: 5 (lower is better)
Translates to: IIVPLSRTVIPRPPGLLKNRPGS*TQRYWQ
Trigger: CTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATT...CTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGGAACTATGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CAA 90 bp AAACTCCTAGCACTGACCAGAACATGGTTCCTGGGCCCAGTATCAGCCAAGCTCAATCGGCCTGGCTCGTaGACACAGCGGTACTGGCAG +
Preference number: 5 (lower is better)
Translates to: KLLALTRTWFLGPVSAKLNRPGS*TQRYWQ
Trigger: CTGCCAGTACCGCTGTGTCAACGAGCCAGGCCGATT...GAGCTTGGCTGATACTGGGCCCAGGAACCATGTTCTGGTCAGTGCTAGGAGTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CAA 90 bp CCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGCAGGGTAGACAGAGGTaGCCTGGATCTGAAACACGT +
Preference number: 5 (lower is better)
Translates to: PLSRTVIPRPPGLLKLWEQGRQR*PGSETR
Trigger: ACGTGTTTCAGATCCAGGCAACCTCTGTCTACCCTG...CTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS TCA 90 bp CCACACAACGGTTGGTGTCCACACAGCGGTAACCCCCATGGAAGTTaGCACAGGTTTGGGCCTCAGAACATTGGTGTGCACCTGTTTCAC +
Preference number: 5 (lower is better)
Translates to: PHNGWCPHSGNPHGS*HRFGPQNIGVHLFH
Trigger: GTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000070118.14
ENSMUST00000164388.2
ENSMUST00000165485.8
ENSMUST00000166253.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000168330.2
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS TCA 90 bp TTGCCTGGATCTGAAACACGTCAGCAGGCACACTTCGCTCTGAGGTaGTGCTCATGTAGCGGTGCACAATGGATGAAGGCTGCTCTCGAC +
Preference number: 5 (lower is better)
Translates to: LPGSETRQQAHFALR*CSCSGAQWMKAALD
Trigger: GTCGAGAGCAGCCTTCATCCATTGTGCACCGCTACATGAGCATCACCTCAGAGCGAAGTGTGCCTGCTGACGTGTTTCAGATCCAGGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000070118.14
ENSMUST00000164388.2
ENSMUST00000165485.8
ENSMUST00000166253.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CAA 90 bp AGAACATGGTTCCTGGGCCCAGTATCAGCCAAGCTCTTGAGTGAGGACCTGAGGCAGGGTAGACAGAGGTaGCCTGGATCTGAAACACGT +
Preference number: 5 (lower is better)
Translates to: RTWFLGPVSAKLLSEDLRQGRQR*PGSETR
Trigger: ACGTGTTTCAGATCCAGGCAACCTCTGTCTACCCTG...CCTCAGGTCCTCACTCAAGAGCTTGGCTGATACTGGGCCCAGGAACCATGTTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CAA 90 bp TTGGCTCTGAAACCTCAGCCTGACTGGAGAGGACCCCTTGTGTGGAACTCACCTCAGGGTAGACAGAGGTaGCCTGGATCTGAAACACGT +
Preference number: 5 (lower is better)
Translates to: LALKPQPDWRGPLVWNSPQGRQR*PGSETR
Trigger: ACGTGTTTCAGATCCAGGCAACCTCTGTCTACCCTG...AGGTGAGTTCCACACAAGGGGTCCTCTCCAGTCAGGCTGAGGTTTCAGAGCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CAA 90 bp TTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGGGGGCTGACATTGTTGATTaGCCTAATGTAGAAGTCCCC +
Preference number: 5 (lower is better)
Translates to: LSRTVIPRPPGLLKLWEGADIVD*PNVEVP
Trigger: GGGGACTTCTACATTAGGCAAATCAACAATGTCAGC...CCCCTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CAA 90 bp CCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGCTATGGGAGGCTGACATTGTTGATTaGCCTAATGTAGAAGTCCCC +
Preference number: 5 (lower is better)
Translates to: PLSRTVIPRPPGLLKLWEADIVD*PNVEVP
Trigger: GGGGACTTCTACATTAGGCAAATCAACAATGTCAGC...CTCCCATAGCTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS GCA 90 bp ACCCCCATGGAAGTTGACACAGGTTTGGGCCTCAGAACATTGGTGTaGACCTGTTTCACACTCGTCAATATCTTGGCAGAGCCTTGTAGC +
Preference number: 5 (lower is better)
Translates to: TPMEVDTGLGLRTLV*TCFTLVNILAEPCS
Trigger: GCTACAAGGCTCTGCCAAGATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000070118.14
ENSMUST00000164388.2
ENSMUST00000165485.8
ENSMUST00000166253.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000168330.2
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CAA 90 bp CAGCCAGGACTCCTTCTTTCTCCCTTTATTGTCCTTCACATCATAGTTCCTTTAATGGTCAGGCACTCGTaGACATCCCGGCAGTGCTGG +
Preference number: 5 (lower is better)
Translates to: QPGLLLSPFIVLHIIVPLMVRHS*TSRQCW
Trigger: CCAGCACTGCCGGGATGTCAACGAGTGCCTGACCAT...TAAAGGAACTATGATGTGAAGGACAATAAAGGGAGAAAGAAGGAGTCCTGGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CAA 90 bp ACCCTAAATATGGATGGCTGGATAATAGATAAACACTCCTTAGGGGCTGGGAATTCTCGACAAAGGGGATaGGAGGCAGGGCAGAGGCAG +
Preference number: 5 (lower is better)
Translates to: TLNMDGWIIDKHSLGAGNSRQRG*EAGQRQ
Trigger: CTGCCTCTGCCCTGCCTCCAATCCCCTTTGTCGAGA...ATTCCCAGCCCCTAAGGAGTGTTTATCTATTATCCAGCCATCCATATTTAGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CAA 90 bp ATCATAGTTCCTTTAAGCAGAACGGTCATCCCTAGGCCCCCGGGGCTGCTTAAGGCTGACATTGTTGATTaGCCTAATGTAGAAGTCCCC +
Preference number: 5 (lower is better)
Translates to: IIVPLSRTVIPRPPGLLKADIVD*PNVEVP
Trigger: GGGGACTTCTACATTAGGCAAATCAACAATGTCAGC...CTTAAGCAGCCCCGGGGGCCTAGGGATGACCGTTCTGCTTAAAGGAACTATGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CAA 90 bp CTGGGCCCAGTATCAGCCAAGCTCTTGAGTGAGGACCTGAGGTACATACTCTTCGCTGACATTGTTGATTaGCCTAATGTAGAAGTCCCC +
Preference number: 5 (lower is better)
Translates to: LGPVSAKLLSEDLRYILFADIVD*PNVEVP
Trigger: GGGGACTTCTACATTAGGCAAATCAACAATGTCAGC...GAAGAGTATGTACCTCAGGTCCTCACTCAAGAGCTTGGCTGATACTGGGCCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CAA 90 bp AAACTCCTAGCACTGACCAGAACATGGTTCCTGGGCCCAGTATCAGCCAAGCTCGCTGACATTGTTGATTaGCCTAATGTAGAAGTCCCC +
Preference number: 5 (lower is better)
Translates to: KLLALTRTWFLGPVSAKLADIVD*PNVEVP
Trigger: GGGGACTTCTACATTAGGCAAATCAACAATGTCAGC...GAGCTTGGCTGATACTGGGCCCAGGAACCATGTTCTGGTCAGTGCTAGGAGTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS-3UTR CAA 90 bp ACCCTAAATATGGATGGCTGGATAATAGATAAACACTCCTTAGGGGCTGGGAATGCTGACATTGTTGATTaGCCTAATGTAGAAGTCCCC +
Preference number: 5 (lower is better)
Translates to: TLNMDGWIIDKHSLGAGNADIVD*PNVEVP
Trigger: GGGGACTTCTACATTAGGCAAATCAACAATGTCAGC...ATTCCCAGCCCCTAAGGAGTGTTTATCTATTATCCAGCCATCCATATTTAGGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000166303.9
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS TCA 72 bp CACCCTTGCAAGCCTCCGGGATGGTCAGGCACTCGTTaGCATCTGCAGAGAGGGGCCTGCTGGGCACAGCCA +
Preference number: 6 (lower is better)
Translates to: HPCKPPGWSGTR*HLQRGACWAQP
Trigger: TGGCTGTGCCCAGCAGGCCCCTCTCTGCAGATGTCAACGAGTGCCTGACCATCCCGGAGGCTTGCAAGGGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169943.8
CDS CAA 72 bp TCACCCTTGCAAGCCTCCGGGATGGTCAGGCACTCGTaGACATCTGCAGAGAGGGGCCTGCTGGGCACAGCC +
Preference number: 6 (lower is better)
Translates to: SPLQASGMVRHS*TSAERGLLGTA
Trigger: GGCTGTGCCCAGCAGGCCCCTCTCTGCAGATGTCAACGAGTGCCTGACCATCCCGGAGGCTTGCAAGGGTGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169943.8
CDS CCA 72 bp GCATTCCGTGTAGCTGTCCGGCTCCTCGGGATCCTGTaGGGACGCTGCTCCCAAGAGCAACAGCAGAAACGC +
Preference number: 6 (lower is better)
Translates to: AFRVAVRLLGIL*GRCSQEQQQKR
Trigger: GCGTTTCTGCTGTTGCTCTTGGGAGCAGCGTCCCCACAGGATCCCGAGGAGCCGGACAGCTACACGGAATGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166253.8
ENSMUST00000166303.9
ENSMUST00000167304.8
ENSMUST00000167371.8
ENSMUST00000169943.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS CAA 90 bp CTCGTCAATATCTTGGCAGAGCCTTGTAGCCAGCAGCTGGTAGCCTaGTGGGCAGTGACAGGAGAATCGGCCTGGCTCGTTGACACAGCG +
Preference number: 6 (lower is better)
Translates to: LVNILAEPCSQQLVA*WAVTGESAWLVDTA
Trigger: CGCTGTGTCAACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAGATATTGACGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000070118.14
ENSMUST00000164388.2
ENSMUST00000165485.8
ENSMUST00000166253.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS TCA 72 bp AAGGGGATTGGAGGCAGGGCAGAGGCAGCGGTTGTCTaGCACTTGGACATAGGGCTCCACACAACGGTTGGT +
Preference number: 6 (lower is better)
Translates to: KGIGGRAEAAVV*HLDIGLHTTVG
Trigger: ACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAACCGCTGCCTCTGCCCTGCCTCCAATCCCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000070118.14
ENSMUST00000164388.2
ENSMUST00000165485.8
ENSMUST00000166253.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS CAA 72 bp ATCTTGGCAGAGCCTTGTAGCCAGCAGCTGGTAGCCTaGTGGGCAGTGACAGGAGAATCGGCCTGGCTCGTT +
Preference number: 6 (lower is better)
Translates to: ILAEPCSQQLVA*WAVTGESAWLV
Trigger: AACGAGCCAGGCCGATTCTCCTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000070118.14
ENSMUST00000164388.2
ENSMUST00000165485.8
ENSMUST00000166253.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS GCA 72 bp AGAGGTAACTGGAGTAGCCGCACTCATCGATATCGCTaGAGGAGAAGCCATCCCGGTGCAGCTCATAGCCCT +
Preference number: 6 (lower is better)
Translates to: RGNWSSRTHRYR*RRSHPGAAHSP
Trigger: AGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCGATATCGATGAGTGCGGCTACTCCAGTTACCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000070118.14
ENSMUST00000165485.8
ENSMUST00000166253.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000167827.2
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS TCA 72 bp GGTTGGTGTCCACACAGCGGTAACCCCCATGGAAGTTaGCACAGGTTTGGGCCTCAGAACATTGGTGTGCAC +
Preference number: 6 (lower is better)
Translates to: GWCPHSGNPHGS*HRFGPQNIGVH
Trigger: GTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000070118.14
ENSMUST00000164388.2
ENSMUST00000165485.8
ENSMUST00000166253.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000168330.2
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS CAA 90 bp GGCCTCAGAACATTGGTGTGCACCTGTTTCACACTCGTCAATATCTaGGCAGAGCCTTGTAGCCAGCAGCTGGTAGCCTTGTGGGCAGTG +
Preference number: 6 (lower is better)
Translates to: GLRTLVCTCFTLVNI*AEPCSQQLVALWAV
Trigger: CACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAGATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000070118.14
ENSMUST00000164388.2
ENSMUST00000165485.8
ENSMUST00000166253.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS CAA 90 bp CAGAACGGATCTGAAAGGCATTGTAGGCACCAGGGTAGACAGAGGTaGCCTGGATCTGAAACACGTCAGCAGGCACACTTCGCTCTGAGG +
Preference number: 6 (lower is better)
Translates to: QNGSERHCRHQGRQR*PGSETRQQAHFALR
Trigger: CCTCAGAGCGAAGTGTGCCTGCTGACGTGTTTCAGATCCAGGCAACCTCTGTCTACCCTGGTGCCTACAATGCCTTTCAGATCCGTTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000070118.14
ENSMUST00000164388.2
ENSMUST00000165485.8
ENSMUST00000166253.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS TCA 72 bp CAGAGCGAGGCAGACACAAATAACCCCCGTAGTGGTTaGTGCATTTCATCTCACCCTTGCAAGCCTCCGGGA +
Preference number: 6 (lower is better)
Translates to: QSEADTNNPRSG*CISSHPCKPPG
Trigger: TCCCGGAGGCTTGCAAGGGTGAGATGAAATGCATCAACCACTACGGGGGTTATTTGTGTCTGCCTCGCTCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000070118.14
ENSMUST00000164204.2
ENSMUST00000165485.8
ENSMUST00000166303.9
ENSMUST00000167304.8
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS GCA 72 bp CTGAAAGGCATTGTAGGCACCAGGGTAGACAGAGGTTaGCTGGATCTGAAACACGTCAGCAGGCACACTTCG +
Preference number: 6 (lower is better)
Translates to: LKGIVGTRVDRG*LDLKHVSRHTS
Trigger: CGAAGTGTGCCTGCTGACGTGTTTCAGATCCAGGCAACCTCTGTCTACCCTGGTGCCTACAATGCCTTTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000070118.14
ENSMUST00000164388.2
ENSMUST00000165485.8
ENSMUST00000166253.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS TCA 72 bp TCTGAAACACGTCAGCAGGCACACTTCGCTCTGAGGTaGTGCTCATGTAGCGGTGCACAATGGATGAAGGCT +
Preference number: 6 (lower is better)
Translates to: SETRQQAHFALR*CSCSGAQWMKA
Trigger: AGCCTTCATCCATTGTGCACCGCTACATGAGCATCACCTCAGAGCGAAGTGTGCCTGCTGACGTGTTTCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000070118.14
ENSMUST00000164388.2
ENSMUST00000165485.8
ENSMUST00000166253.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS CAA 72 bp TCTGAAAGGCATTGTAGGCACCAGGGTAGACAGAGGTaGCCTGGATCTGAAACACGTCAGCAGGCACACTTC +
Preference number: 6 (lower is better)
Translates to: SERHCRHQGRQR*PGSETRQQAHF
Trigger: GAAGTGTGCCTGCTGACGTGTTTCAGATCCAGGCAACCTCTGTCTACCCTGGTGCCTACAATGCCTTTCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000070118.14
ENSMUST00000164388.2
ENSMUST00000165485.8
ENSMUST00000166253.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS CAA 90 bp GCGGTAACCCCCATGGAAGTTGACACAGGTTTGGGCCTCAGAACATaGGTGTGCACCTGTTTCACACTCGTCAATATCTTGGCAGAGCCT +
Preference number: 6 (lower is better)
Translates to: AVTPMEVDTGLGLRT*VCTCFTLVNILAEP
Trigger: AGGCTCTGCCAAGATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000070118.14
ENSMUST00000164388.2
ENSMUST00000165485.8
ENSMUST00000166253.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000168330.2
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS TCA 72 bp TGCTCATGTAGCGGTGCACAATGGATGAAGGTTGTCTaGCACTTGGACATAGGGCTCCACACAACGGTTGGT +
Preference number: 6 (lower is better)
Translates to: CSCSGAQWMKVV*HLDIGLHTTVG
Trigger: ACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAACCTTCATCCATTGTGCACCGCTACATGAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168330.2
CDS CCA 72 bp CCATGGAAGTTGACACAGGTTTGGGCCTCAGAACATTaGTGTGCACCTGTTTCACACTCGTCAATATCTTGG +
Preference number: 6 (lower is better)
Translates to: PWKLTQVWASEH*CAPVSHSSISW
Trigger: CCAAGATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000070118.14
ENSMUST00000164388.2
ENSMUST00000165485.8
ENSMUST00000166253.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000168330.2
ENSMUST00000235523.2
ENSMUST00000236518.2
CDS CAA 72 bp CCCATGGAAGTTGACACAGGTTTGGGCCTCAGAACATaGGTGTGCACCTGTTTCACACTCGTCAATATCTTG +
Preference number: 6 (lower is better)
Translates to: PMEVDTGLGLRT*VCTCFTLVNIL
Trigger: CAAGATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000070118.14
ENSMUST00000164388.2
ENSMUST00000165485.8
ENSMUST00000166253.8
ENSMUST00000166303.9
ENSMUST00000167371.8
ENSMUST00000168330.2
ENSMUST00000235523.2
ENSMUST00000236518.2