RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for EFEMP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020467

Ensembl transcript IDs: ENSMUST00000020759.12, ENSMUST00000139713.2

Found 123 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCCTCCTTCTTGATCTTCATGCTAAGATGGCCAATTCTCACGGGATaGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGTAT +
Preference number: 1 (lower is better)
Translates to: PSFLIFMLRWPILTG*SVEVYISLYNTEQY
Trigger: ATACTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGTGAGAATTGGCCATCTTAGCATGAAGATCAAGAAGGAGGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020759.12
ENSMUST00000139713.2
3UTR-3UTR GCA 90 bp TTCTCACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGTTGCTTGGTCCCATTTTaGAGGAAAGAATCCAAGTTT +
Preference number: 2 (lower is better)
Translates to: FSRDGLWRCIFLYTTQNSCLVPF*RKESKF
Trigger: AAACTTGGATTCTTTCCTGCAAAATGGGACCAAGCA...ACTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGTGAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020759.12
ENSMUST00000139713.2
CDS-3UTR CCA 90 bp TTCTCACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGTCAGGCACCACACCACTaGTTGCCATGCTCCTGGCAG +
Preference number: 4 (lower is better)
Translates to: FSRDGLWRCIFLYTTQNSQAPHH*LPCSWQ
Trigger: CTGCCAGGAGCATGGCAACCAGTGGTGTGGTGCCTG...ACTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGTGAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR GCA 90 bp TTCTCACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGTCACCACTGGTTGCCATaGTCCTGGCAGCTACAGTCC +
Preference number: 4 (lower is better)
Translates to: FSRDGLWRCIFLYTTQNSHHWLP*SWQLQS
Trigger: GGACTGTAGCTGCCAGGAGCATGGCAACCAGTGGTG...ACTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGTGAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR GCA 90 bp ATTCTCACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGCACCACACCACTGGTTaGCATGCTCCTGGCAGCTAC +
Preference number: 4 (lower is better)
Translates to: ILTGWSVEVYISLYNTEQHHTTG*HAPGSY
Trigger: GTAGCTGCCAGGAGCATGGCAACCAGTGGTGTGGTG...CTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGTGAGAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR CCA 90 bp CTCTATACAACACAGAACAGTATCCTTGCTTGGTCCCATTTTGCAGGAAAGAATTCCGGTGGGAAGGGTTaGAAGGGATGCGCTGAGGGT +
Preference number: 4 (lower is better)
Translates to: LYTTQNSILAWSHFAGKNSGGKG*KGCAEG
Trigger: ACCCTCAGCGCATCCCTTCCAACCCTTCCCACCGGA...ATTCTTTCCTGCAAAATGGGACCAAGCAAGGATACTGTTCTGTGTTGTATAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR TCA 90 bp TCTATACAACACAGAACAGTATCCTTGCTTGGTCCCATTTTGCAGGAAAGAATCCGGTGTACTGTGACTTaGCCAGCGCCAGAGTCAGCA +
Preference number: 4 (lower is better)
Translates to: SIQHRTVSLLGPILQERIRCTVT*PAPESA
Trigger: TGCTGACTCTGGCGCTGGTCAAGTCACAGTACACCG...GATTCTTTCCTGCAAAATGGGACCAAGCAAGGATACTGTTCTGTGTTGTATAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR TCA 90 bp ATTCTCACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGTTGTTTGCTGCCAGCTaGAACCCTGGACTGCACTGG +
Preference number: 4 (lower is better)
Translates to: ILTGWSVEVYISLYNTEQLFAAS*NPGLHW
Trigger: CCAGTGCAGTCCAGGGTTTCAGCTGGCAGCAAACAA...CTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGTGAGAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR CCA 90 bp TTCTCACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGTCTACAGTCCCAGTGGTaGCACCTGACGAAGCTTCTG +
Preference number: 4 (lower is better)
Translates to: FSRDGLWRCIFLYTTQNSLQSQW*HLTKLL
Trigger: CAGAAGCTTCGTCAGGTGCCACCACTGGGACTGTAG...ACTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGTGAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR CCA 90 bp TCTATACAACACAGAACAGTATCCTTGCTTGGTCCCATTTTGCAGGAAAGAATCTGGTTGCCATGCTCCTaGCAGCTACAGTCCCAGTGG +
Preference number: 4 (lower is better)
Translates to: SIQHRTVSLLGPILQERIWLPCS*QLQSQW
Trigger: CCACTGGGACTGTAGCTGCCAGGAGCATGGCAACCA...GATTCTTTCCTGCAAAATGGGACCAAGCAAGGATACTGTTCTGTGTTGTATAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR CCA 90 bp CTCTATACAACACAGAACAGTATCCTTGCTTGGTCCCATTTTGCAGGAAAGAATGCACACTGGATCCGGTaGGAAGGGTTGGAAGGGATG +
Preference number: 4 (lower is better)
Translates to: LYTTQNSILAWSHFAGKNAHWIR*EGLEGM
Trigger: CATCCCTTCCAACCCTTCCCACCGGATCCAGTGTGC...ATTCTTTCCTGCAAAATGGGACCAAGCAAGGATACTGTTCTGTGTTGTATAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR TCA 90 bp TCTATACAACACAGAACAGTATCCTTGCTTGGTCCCATTTTGCAGGAAAGAATCTTCCTCGGTGTACTGTaGCTTGACCAGCGCCAGAGT +
Preference number: 4 (lower is better)
Translates to: SIQHRTVSLLGPILQERIFLGVL*LDQRQS
Trigger: ACTCTGGCGCTGGTCAAGTCACAGTACACCGAGGAA...GATTCTTTCCTGCAAAATGGGACCAAGCAAGGATACTGTTCTGTGTTGTATAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR TCA 90 bp CTCTATACAACACAGAACAGTATCCTTGCTTGGTCCCATTTTGCAGGAAAGAATTTGGAAGGGATGCGCTaGGGGTCAGCTGGGTTTCTT +
Preference number: 4 (lower is better)
Translates to: LYTTQNSILAWSHFAGKNLEGMR*GSAGFL
Trigger: AAGAAACCCAGCTGACCCTCAGCGCATCCCTTCCAA...ATTCTTTCCTGCAAAATGGGACCAAGCAAGGATACTGTTCTGTGTTGTATAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR TCA 90 bp ACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGTATCCTCCGGCACATAGTGTTTaGGACTGGGCAAACACATCG +
Preference number: 4 (lower is better)
Translates to: TGWSVEVYISLYNTEQYPPAHSV*DWANTS
Trigger: CGATGTGTTTGCCCAGTCTCAAACACTATGTGCCGG...AGGATACTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020759.12
ENSMUST00000139713.2
CDS-3UTR GCA 90 bp TTCTCACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGTACTCTGTTCATAGCCTaGTGCACACTGGATCCGGTG +
Preference number: 4 (lower is better)
Translates to: FSRDGLWRCIFLYTTQNSTLFIA*CTLDPV
Trigger: CACCGGATCCAGTGTGCAGCAGGCTATGAACAGAGT...ACTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGTGAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR GCA 90 bp ATTCTCACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGGCTGAAACCCTGGACTaGACTGGCAGTAGAAGGAAC +
Preference number: 4 (lower is better)
Translates to: ILTGWSVEVYISLYNTEQAETLD*TGSRRN
Trigger: GTTCCTTCTACTGCCAGTGCAGTCCAGGGTTTCAGC...CTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGTGAGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR CCA 90 bp CTCTATACAACACAGAACAGTATCCTTGCTTGGTCCCATTTTGCAGGAAAGAATCAGCTACAGTCCCAGTaGTGGCACCTGACGAAGCTT +
Preference number: 4 (lower is better)
Translates to: LYTTQNSILAWSHFAGKNQLQSQ*WHLTKL
Trigger: AAGCTTCGTCAGGTGCCACCACTGGGACTGTAGCTG...ATTCTTTCCTGCAAAATGGGACCAAGCAAGGATACTGTTCTGTGTTGTATAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR CCA 90 bp ATTCTCACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGGCGCTGAGGGTCAGCTaGGTTTCTTCGGATGACAAA +
Preference number: 4 (lower is better)
Translates to: ILTGWSVEVYISLYNTEQALRVS*VSSDDK
Trigger: TTTGTCATCCGAAGAAACCCAGCTGACCCTCAGCGC...CTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGTGAGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR CCA 90 bp ACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGTATCCTTGCCAGCTGAAACCCTaGACTGCACTGGCAGTAGAA +
Preference number: 4 (lower is better)
Translates to: TGWSVEVYISLYNTEQYPCQLKP*TALAVE
Trigger: TTCTACTGCCAGTGCAGTCCAGGGTTTCAGCTGGCA...AGGATACTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR CCA 90 bp TTCTCACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGTTGTATTTGTAGACAATaGACTGGGGCAGCTCCCGGC +
Preference number: 4 (lower is better)
Translates to: FSRDGLWRCIFLYTTQNSCICRQ*TGAAPG
Trigger: GCCGGGAGCTGCCCCAGTCCATTGTCTACAAATACA...ACTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGTGAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020759.12
ENSMUST00000139713.2
CDS-3UTR TCA 90 bp TCTATACAACACAGAACAGTATCCTTGCTTGGTCCCATTTTGCAGGAAAGAATCCCGGCACATAGTGTTTaGGACTGGGCAAACACATCG +
Preference number: 4 (lower is better)
Translates to: SIQHRTVSLLGPILQERIPAHSV*DWANTS
Trigger: CGATGTGTTTGCCCAGTCTCAAACACTATGTGCCGG...GATTCTTTCCTGCAAAATGGGACCAAGCAAGGATACTGTTCTGTGTTGTATAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020759.12
ENSMUST00000139713.2
CDS-3UTR GCA 90 bp TCTATACAACACAGAACAGTATCCTTGCTTGGTCCCATTTTGCAGGAAAGAATCTTCAGGGCCAGCAACTaGAGTAGCACTGGCCATGAA +
Preference number: 4 (lower is better)
Translates to: SIQHRTVSLLGPILQERIFRASN*SSTGHE
Trigger: TTCATGGCCAGTGCTACTGCAGTTGCTGGCCCTGAA...GATTCTTTCCTGCAAAATGGGACCAAGCAAGGATACTGTTCTGTGTTGTATAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR GCA 90 bp ATTCTCACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGCACAAGCACCAGCATTaGACTCACAGGGCTTGTTTG +
Preference number: 4 (lower is better)
Translates to: ILTGWSVEVYISLYNTEQHKHQH*THRACL
Trigger: CAAACAAGCCCTGTGAGTGCAATGCTGGTGCTTGTG...CTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGTGAGAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020759.12
ENSMUST00000139713.2
CDS-3UTR CCA 90 bp ATTCTCACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGCGAAGCTTCTGCAGCTaGTGTTTCTTGCTGAGGATG +
Preference number: 4 (lower is better)
Translates to: ILTGWSVEVYISLYNTEQRSFCS*CFLLRM
Trigger: CATCCTCAGCAAGAAACACCAGCTGCAGAAGCTTCG...CTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGTGAGAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR CCA 90 bp TCTATACAACACAGAACAGTATCCTTGCTTGGTCCCATTTTGCAGGAAAGAATCTGTATTTGTAGACAATaGACTGGGGCAGCTCCCGGC +
Preference number: 4 (lower is better)
Translates to: SIQHRTVSLLGPILQERICICRQ*TGAAPG
Trigger: GCCGGGAGCTGCCCCAGTCCATTGTCTACAAATACA...GATTCTTTCCTGCAAAATGGGACCAAGCAAGGATACTGTTCTGTGTTGTATAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020759.12
ENSMUST00000139713.2
CDS-3UTR TCA 90 bp CTCTATACAACACAGAACAGTATCCTTGCTTGGTCCCATTTTGCAGGAAAGAATTACCCAGGAAGACACTaGCATGTGAAGGAACCTCGT +
Preference number: 4 (lower is better)
Translates to: LYTTQNSILAWSHFAGKNYPGRH*HVKEPR
Trigger: ACGAGGTTCCTTCACATGTCAGTGTCTTCCTGGGTA...ATTCTTTCCTGCAAAATGGGACCAAGCAAGGATACTGTTCTGTGTTGTATAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR TCA 90 bp TTCTCACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGTCTGTGGGCACATACATaGGAACTTCCCAGGTTCATT +
Preference number: 4 (lower is better)
Translates to: FSRDGLWRCIFLYTTQNSLWAHT*ELPRFI
Trigger: AATGAACCTGGGAAGTTCTCATGTATGTGCCCACAG...ACTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGTGAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR GCA 90 bp ATTCTCACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGTGTGAGTCCCTGAGGTaGACTCATCAATATCTTGGC +
Preference number: 4 (lower is better)
Translates to: ILTGWSVEVYISLYNTEQCESLR*THQYLG
Trigger: GCCAAGATATTGATGAGTGCACCTCAGGGACTCACA...CTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGTGAGAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR TCA 90 bp TTCTCACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGTGCTGGTGTTTCTTGCTaGGGATGCTCATTATTGACA +
Preference number: 4 (lower is better)
Translates to: FSRDGLWRCIFLYTTQNSAGVSC*GCSLLT
Trigger: TGTCAATAATGAGCATCCTCAGCAAGAAACACCAGC...ACTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGTGAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR TCA 90 bp TCTATACAACACAGAACAGTATCCTTGCTTGGTCCCATTTTGCAGGAAAGAATCTTATTTCGGCCAGTTTaGACTTCAGGGCCAGCAACT +
Preference number: 4 (lower is better)
Translates to: SIQHRTVSLLGPILQERILFRPV*TSGPAT
Trigger: AGTTGCTGGCCCTGAAGTTCAAACTGGCCGAAATAA...GATTCTTTCCTGCAAAATGGGACCAAGCAAGGATACTGTTCTGTGTTGTATAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR TCA 90 bp TCTATACAACACAGAACAGTATCCTTGCTTGGTCCCATTTTGCAGGAAAGAATCCTGGGTTTCTTCGGATaGCAAAGTTATTTCGGCCAG +
Preference number: 4 (lower is better)
Translates to: SIQHRTVSLLGPILQERILGFFG*QSYFGQ
Trigger: CTGGCCGAAATAACTTTGTCATCCGAAGAAACCCAG...GATTCTTTCCTGCAAAATGGGACCAAGCAAGGATACTGTTCTGTGTTGTATAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR TCA 90 bp ATTCTCACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGCGATGTCTTCACAGTTaGGTCTGTCACTGCTTAGTT +
Preference number: 4 (lower is better)
Translates to: ILTGWSVEVYISLYNTEQRCLHS*VCHCLV
Trigger: AACTAAGCAGTGACAGACTCAACTGTGAAGACATCG...CTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGTGAGAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR GCA 90 bp TCTATACAACACAGAACAGTATCCTTGCTTGGTCCCATTTTGCAGGAAAGAATCGGTAGCTTGAGGTTCTaGATTCGTCGATGTCTTCAC +
Preference number: 4 (lower is better)
Translates to: SIQHRTVSLLGPILQERIGSLRF*IRRCLH
Trigger: GTGAAGACATCGACGAATGCAGAACCTCAAGCTACC...GATTCTTTCCTGCAAAATGGGACCAAGCAAGGATACTGTTCTGTGTTGTATAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR CCA 90 bp ACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGTATCCTATTGTTGCCTGTATCTaGAAGATGTCTGAAGGCACG +
Preference number: 4 (lower is better)
Translates to: TGWSVEVYISLYNTEQYPIVACI*KMSEGT
Trigger: CGTGCCTTCAGACATCTTCCAGATACAGGCAACAAT...AGGATACTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020759.12
ENSMUST00000139713.2
CDS-3UTR CCA 90 bp ATTCTCACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGATTGTTGCCTGTATCTaGAAGATGTCTGAAGGCACG +
Preference number: 4 (lower is better)
Translates to: ILTGWSVEVYISLYNTEQIVACI*KMSEGT
Trigger: CGTGCCTTCAGACATCTTCCAGATACAGGCAACAAT...CTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGTGAGAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020759.12
ENSMUST00000139713.2
CDS-3UTR TCA 90 bp TTCTCACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGTATCCTCCATAGTGGTTaGCACATTTCATTCCACCTT +
Preference number: 4 (lower is better)
Translates to: FSRDGLWRCIFLYTTQNSILHSG*HISFHL
Trigger: AAGGTGGAATGAAATGTGTCAACCACTATGGAGGAT...ACTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGTGAGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR TCA 90 bp ACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGTATCCTACACTGACAGATGAATaGGCCAAGAATGTTGTAGCA +
Preference number: 4 (lower is better)
Translates to: TGWSVEVYISLYNTEQYPTLTDE*AKNVVA
Trigger: TGCTACAACATTCTTGGCTCATTCATCTGTCAGTGT...AGGATACTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020759.12
ENSMUST00000139713.2
CDS-3UTR GCA 90 bp TCTATACAACACAGAACAGTATCCTTGCTTGGTCCCATTTTGCAGGAAAGAATCTATCCATCGGTGCATTaGGTGTATGTGATGGTTTCC +
Preference number: 4 (lower is better)
Translates to: SIQHRTVSLLGPILQERIYPSVH*VYVMVS
Trigger: GGAAACCATCACATACACGCAATGCACCGATGGATA...GATTCTTTCCTGCAAAATGGGACCAAGCAAGGATACTGTTCTGTGTTGTATAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR GCA 90 bp TTCTCACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGTGTTGAGCACACTGGTTaGTGGCATCACATTCATTTA +
Preference number: 4 (lower is better)
Translates to: FSRDGLWRCIFLYTTQNSVEHTG*WHHIHL
Trigger: TAAATGAATGTGATGCCAGCAACCAGTGTGCTCAAC...ACTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGTGAGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR CCA 90 bp TCTATACAACACAGAACAGTATCCTTGCTTGGTCCCATTTTGCAGGAAAGAATCTCTTTGGTGGCAATATaGAGGCACTGTGCATTCATC +
Preference number: 4 (lower is better)
Translates to: SIQHRTVSLLGPILQERISLVAI*RHCAFI
Trigger: GATGAATGCACAGTGCCTCCATATTGCCACCAAAGA...GATTCTTTCCTGCAAAATGGGACCAAGCAAGGATACTGTTCTGTGTTGTATAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR CCA 90 bp TTCTCACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGTTTAACACATCTTTGGTaGCAATATGGAGGCACTGTG +
Preference number: 4 (lower is better)
Translates to: FSRDGLWRCIFLYTTQNSLTHLW*QYGGTV
Trigger: CACAGTGCCTCCATATTGCCACCAAAGATGTGTTAA...ACTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGTGAGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR CCA 90 bp ACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGTATCCTGTGTTAACACATCTTTaGTGGCAATATGGAGGCACT +
Preference number: 4 (lower is better)
Translates to: TGWSVEVYISLYNTEQYPVLTHL*WQYGGT
Trigger: AGTGCCTCCATATTGCCACCAAAGATGTGTTAACAC...AGGATACTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR TCA 90 bp TTCTCACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGTGATTACACTGACAGATaGATGAGCCAAGAATGTTGT +
Preference number: 4 (lower is better)
Translates to: FSRDGLWRCIFLYTTQNSDYTDR*MSQECC
Trigger: ACAACATTCTTGGCTCATTCATCTGTCAGTGTAATC...ACTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGTGAGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020759.12
ENSMUST00000139713.2
CDS-3UTR GCA 90 bp TTCTCACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGTATTTCATTCCACCTTTaGAAGCATCTGGGACAATGT +
Preference number: 4 (lower is better)
Translates to: FSRDGLWRCIFLYTTQNSISFHL*KHLGQC
Trigger: ACATTGTCCCAGATGCTTGCAAAGGTGGAATGAAAT...ACTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGTGAGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR GCA 90 bp TTCTCACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGTAATATGGAGGCACTGTaGATTCATCTATATCCACAC +
Preference number: 4 (lower is better)
Translates to: FSRDGLWRCIFLYTTQNSNMEAL*IHLYPH
Trigger: GTGTGGATATAGATGAATGCACAGTGCCTCCATATT...ACTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGTGAGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR GCA 90 bp ATTCTCACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGACCTGTCAGATCGGATaGTCATGTATTTGTAGACAA +
Preference number: 4 (lower is better)
Translates to: ILTGWSVEVYISLYNTEQTCQIG*SCICRQ
Trigger: TTGTCTACAAATACATGAGCATCCGATCTGACAGGT...CTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGTGAGAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020759.12
ENSMUST00000139713.2
CDS-3UTR CCA 90 bp TCTATACAACACAGAACAGTATCCTTGCTTGGTCCCATTTTGCAGGAAAGAATCACCTTTGCAAGCATCTaGGACAATGTCACATTCATC +
Preference number: 4 (lower is better)
Translates to: SIQHRTVSLLGPILQERITFASI*DNVTFI
Trigger: GATGAATGTGACATTGTCCCAGATGCTTGCAAAGGT...GATTCTTTCCTGCAAAATGGGACCAAGCAAGGATACTGTTCTGTGTTGTATAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR CCA 90 bp ACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGTATCCTCTTCTCGGCATTCATTaGTGGTCTCACATTCATTTA +
Preference number: 4 (lower is better)
Translates to: TGWSVEVYISLYNTEQYPLLGIH*WSHIHL
Trigger: TAAATGAATGTGAGACCACCAATGAATGCCGAGAAG...AGGATACTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020759.12
ENSMUST00000139713.2
CDS-3UTR TCA 90 bp CTCTATACAACACAGAACAGTATCCTTGCTTGGTCCCATTTTGCAGGAAAGAATGATTACACTGACAGATaGATGAGCCAAGAATGTTGT +
Preference number: 4 (lower is better)
Translates to: LYTTQNSILAWSHFAGKNDYTDR*MSQECC
Trigger: ACAACATTCTTGGCTCATTCATCTGTCAGTGTAATC...ATTCTTTCCTGCAAAATGGGACCAAGCAAGGATACTGTTCTGTGTTGTATAGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020759.12
ENSMUST00000139713.2
CDS-3UTR TCA 90 bp CTCTATACAACACAGAACAGTATCCTTGCTTGGTCCCATTTTGCAGGAAAGAATACTTCCCAGGTTCATTaGCACATTGATATTGGCATA +
Preference number: 4 (lower is better)
Translates to: LYTTQNSILAWSHFAGKNTSQVH*HIDIGI
Trigger: TATGCCAATATCAATGTGTCAATGAACCTGGGAAGT...ATTCTTTCCTGCAAAATGGGACCAAGCAAGGATACTGTTCTGTGTTGTATAGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR GCA 90 bp CTCTATACAACACAGAACAGTATCCTTGCTTGGTCCCATTTTGCAGGAAAGAATTCAATATCTTTACACTaGTGTCTTATGGGGTCCCAT +
Preference number: 4 (lower is better)
Translates to: LYTTQNSILAWSHFAGKNSISLH*CLMGSH
Trigger: ATGGGACCCCATAAGACAGCAGTGTAAAGATATTGA...ATTCTTTCCTGCAAAATGGGACCAAGCAAGGATACTGTTCTGTGTTGTATAGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR GCA 90 bp TCTATACAACACAGAACAGTATCCTTGCTTGGTCCCATTTTGCAGGAAAGAATCACCTGTCAGATCGGATaGTCATGTATTTGTAGACAA +
Preference number: 4 (lower is better)
Translates to: SIQHRTVSLLGPILQERITCQIG*SCICRQ
Trigger: TTGTCTACAAATACATGAGCATCCGATCTGACAGGT...GATTCTTTCCTGCAAAATGGGACCAAGCAAGGATACTGTTCTGTGTTGTATAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020759.12
ENSMUST00000139713.2
CDS-3UTR CCA 90 bp TCTATACAACACAGAACAGTATCCTTGCTTGGTCCCATTTTGCAGGAAAGAATCGAGCACACTGGTTGCTaGCATCACATTCATTTATAT +
Preference number: 4 (lower is better)
Translates to: SIQHRTVSLLGPILQERIEHTGC*HHIHLY
Trigger: ATATAAATGAATGTGATGCCAGCAACCAGTGTGCTC...GATTCTTTCCTGCAAAATGGGACCAAGCAAGGATACTGTTCTGTGTTGTATAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR CCA 90 bp ATTCTCACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGCTCGGCATTCATTGGTaGTCTCACATTCATTTATAT +
Preference number: 4 (lower is better)
Translates to: ILTGWSVEVYISLYNTEQLGIHW*SHIHLY
Trigger: ATATAAATGAATGTGAGACCACCAATGAATGCCGAG...CTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGTGAGAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020759.12
ENSMUST00000139713.2
CDS-3UTR CCA 90 bp TTCTCACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGTCTCGGCATTCATTGGTaGTCTCACATTCATTTATAT +
Preference number: 4 (lower is better)
Translates to: FSRDGLWRCIFLYTTQNSLGIHW*SHIHLY
Trigger: ATATAAATGAATGTGAGACCACCAATGAATGCCGAG...ACTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGTGAGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020759.12
ENSMUST00000139713.2
CDS-3UTR CCA 90 bp CTCTATACAACACAGAACAGTATCCTTGCTTGGTCCCATTTTGCAGGAAAGAATCTTCTCGGCATTCATTaGTGGTCTCACATTCATTTA +
Preference number: 4 (lower is better)
Translates to: LYTTQNSILAWSHFAGKNLLGIH*WSHIHL
Trigger: TAAATGAATGTGAGACCACCAATGAATGCCGAGAAG...ATTCTTTCCTGCAAAATGGGACCAAGCAAGGATACTGTTCTGTGTTGTATAGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020759.12
ENSMUST00000139713.2
CDS-3UTR TCA 90 bp TCTATACAACACAGAACAGTATCCTTGCTTGGTCCCATTTTGCAGGAAAGAATCTTATATCTTCACAGTTaGGTCTGTCACTGCTTAGTT +
Preference number: 4 (lower is better)
Translates to: SIQHRTVSLLGPILQERILYLHS*VCHCLV
Trigger: AACTAAGCAGTGACAGACTCAACTGTGAAGATATAA...GATTCTTTCCTGCAAAATGGGACCAAGCAAGGATACTGTTCTGTGTTGTATAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139713.2
CDS-3UTR CCA 90 bp TTCTCACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGTTTATTGACAATAATTTaGGCTGTTTTAGGAAGGCAG +
Preference number: 4 (lower is better)
Translates to: FSRDGLWRCIFLYTTQNSLLTII*AVLGRQ
Trigger: CTGCCTTCCTAAAACAGCCCAAATTATTGTCAATAA...ACTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGTGAGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS TCA 90 bp CCTGCTGCACACTGGATCCGGTGGGAAGGGTTGGAAGGGATGCGCTaGGGGTCAGCTGGGTTTCTTCGGATGACAAAGTTATTTCGGCCA +
Preference number: 5 (lower is better)
Translates to: PAAHWIRWEGLEGMR*GSAGFLRMTKLFRP
Trigger: TGGCCGAAATAACTTTGTCATCCGAAGAAACCCAGCTGACCCTCAGCGCATCCCTTCCAACCCTTCCCACCGGATCCAGTGTGCAGCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS CCA 90 bp CTGGATCCGGTGGGAAGGGTTGGAAGGGATGCGCTGAGGGTCAGCTaGGTTTCTTCGGATGACAAAGTTATTTCGGCCAGTTTGAACTTC +
Preference number: 5 (lower is better)
Translates to: LDPVGRVGRDALRVS*VSSDDKVISASLNF
Trigger: GAAGTTCAAACTGGCCGAAATAACTTTGTCATCCGAAGAAACCCAGCTGACCCTCAGCGCATCCCTTCCAACCCTTCCCACCGGATCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS TCA 90 bp GGGTCAGCTGGGTTTCTTCGGATGACAAAGTTATTTCGGCCAGTTTaGACTTCAGGGCCAGCAACTGCAGTAGCACTGGCCATGAAGCCA +
Preference number: 5 (lower is better)
Translates to: GSAGFLRMTKLFRPV*TSGPATAVALAMKP
Trigger: TGGCTTCATGGCCAGTGCTACTGCAGTTGCTGGCCCTGAAGTTCAAACTGGCCGAAATAACTTTGTCATCCGAAGAAACCCAGCTGACCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS TCA 90 bp AAGGGTTGGAAGGGATGCGCTGAGGGTCAGCTGGGTTTCTTCGGATaGCAAAGTTATTTCGGCCAGTTTGAACTTCAGGGCCAGCAACTG +
Preference number: 5 (lower is better)
Translates to: KGWKGCAEGQLGFFG*QSYFGQFELQGQQL
Trigger: CAGTTGCTGGCCCTGAAGTTCAAACTGGCCGAAATAACTTTGTCATCCGAAGAAACCCAGCTGACCCTCAGCGCATCCCTTCCAACCCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS GCA 90 bp ATCAATATCTTGGCACACATTATGCTCACTCTGTTCATAGCCTGCTaGACACTGGATCCGGTGGGAAGGGTTGGAAGGGATGCGCTGAGG +
Preference number: 5 (lower is better)
Translates to: INILAHIMLTLFIAC*TLDPVGRVGRDALR
Trigger: CCTCAGCGCATCCCTTCCAACCCTTCCCACCGGATCCAGTGTGCAGCAGGCTATGAACAGAGTGAGCATAATGTGTGCCAAGATATTGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS GCA 90 bp CTCATCAATATCTTGGCACACATTATGCTCACTCTGTTCATAGCCTaGTGCACACTGGATCCGGTGGGAAGGGTTGGAAGGGATGCGCTG +
Preference number: 5 (lower is better)
Translates to: LINILAHIMLTLFIA*CTLDPVGRVGRDAL
Trigger: CAGCGCATCCCTTCCAACCCTTCCCACCGGATCCAGTGTGCAGCAGGCTATGAACAGAGTGAGCATAATGTGTGCCAAGATATTGATGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR CAA 90 bp TTCTCACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGTGCACCACACCACTGGTaGCCATGCTCCTGGCAGCTA +
Preference number: 5 (lower is better)
Translates to: FSRDGLWRCIFLYTTQNSAPHHW*PCSWQL
Trigger: TAGCTGCCAGGAGCATGGCAACCAGTGGTGTGGTGC...ACTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGTGAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS GCA 90 bp TTACACTGCTGTCTTATGGGGTCCCATTCATATCCATCGGTGCATTaGGTGTATGTGATGGTTTCCTCGGTGTACTGTGACTTGACCAGC +
Preference number: 5 (lower is better)
Translates to: LHCCLMGSHSYPSVH*VYVMVSSVYCDLTS
Trigger: GCTGGTCAAGTCACAGTACACCGAGGAAACCATCACATACACGCAATGCACCGATGGATATGAATGGGACCCCATAAGACAGCAGTGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR CAA 90 bp ACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGTATCCTTCGGTGTACTGTGACTaGACCAGCGCCAGAGTCAGC +
Preference number: 5 (lower is better)
Translates to: TGWSVEVYISLYNTEQYPSVYCD*TSARVS
Trigger: GCTGACTCTGGCGCTGGTCAAGTCACAGTACACCGA...AGGATACTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS TCA 90 bp CCAGTGGTGGCACCTGACGAAGCTTCTGCAGCTGGTGTTTCTTGCTaGGGATGCTCATTATTGACAATAATTTGGGCTGTTTTAGGAAGG +
Preference number: 5 (lower is better)
Translates to: PVVAPDEASAAGVSC*GCSLLTIIWAVLGR
Trigger: CCTTCCTAAAACAGCCCAAATTATTGTCAATAATGAGCATCCTCAGCAAGAAACACCAGCTGCAGAAGCTTCGTCAGGTGCCACCACTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS CCA 90 bp CCCCATGGTAATTCCAGCACATCTCATCTTCTCGGCATTCATTGGTaGTCTCACATTCATTTATATCCTGACAGGTTCTGCTGCGCACCA +
Preference number: 5 (lower is better)
Translates to: PHGNSSTSHLLGIHW*SHIHLYPDRFCCAP
Trigger: TGGTGCGCAGCAGAACCTGTCAGGATATAAATGAATGTGAGACCACCAATGAATGCCGAGAAGATGAGATGTGCTGGAATTACCATGGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS CCA 90 bp AGCCCCCATGGTAATTCCAGCACATCTCATCTTCTCGGCATTCATTaGTGGTCTCACATTCATTTATATCCTGACAGGTTCTGCTGCGCA +
Preference number: 5 (lower is better)
Translates to: SPHGNSSTSHLLGIH*WSHIHLYPDRFCCA
Trigger: TGCGCAGCAGAACCTGTCAGGATATAAATGAATGTGAGACCACCAATGAATGCCGAGAAGATGAGATGTGCTGGAATTACCATGGGGGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS CCA 90 bp GCAGTAGAAGGAACCAGGTGTGTTAACACATCTTTGGTGGCAATATaGAGGCACTGTGCATTCATCTATATCCACACACTGTTCACCTCG +
Preference number: 5 (lower is better)
Translates to: AVEGTRCVNTSLVAI*RHCAFIYIHTLFTS
Trigger: CGAGGTGAACAGTGTGTGGATATAGATGAATGCACAGTGCCTCCATATTGCCACCAAAGATGTGTTAACACACCTGGTTCCTTCTACTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS TCA 90 bp CTTCGTAACCCTGTGGGCACATACATGAGAACTTCCCAGGTTCATTaGCACATTGATATTGGCATAGGTAGCTTGAGGTTCTGCATTCGT +
Preference number: 5 (lower is better)
Translates to: LRNPVGTYMRTSQVH*HIDIGIGSLRFCIR
Trigger: ACGAATGCAGAACCTCAAGCTACCTATGCCAATATCAATGTGTCAATGAACCTGGGAAGTTCTCATGTATGTGCCCACAGGGTTACGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR CAA 90 bp ATTCTCACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGCACAAGTGTAGTTGTTaGCTGCCAGCTGAAACCCTG +
Preference number: 5 (lower is better)
Translates to: ILTGWSVEVYISLYNTEQHKCSC*LPAETL
Trigger: CAGGGTTTCAGCTGGCAGCAAACAACTACACTTGTG...CTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGTGAGAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS GCA 90 bp TTGCAAGCATCTGGGACAATGTCACATTCATCAATATCTTTACACTaGTGTCTTATGGGGTCCCATTCATATCCATCGGTGCATTGCGTG +
Preference number: 5 (lower is better)
Translates to: LQASGTMSHSSISLH*CLMGSHSYPSVHCV
Trigger: CACGCAATGCACCGATGGATATGAATGGGACCCCATAAGACAGCAGTGTAAAGATATTGATGAATGTGACATTGTCCCAGATGCTTGCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR CAA 90 bp TCTATACAACACAGAACAGTATCCTTGCTTGGTCCCATTTTGCAGGAAAGAATCGTTATTTCGGCCAGTTaGAACTTCAGGGCCAGCAAC +
Preference number: 5 (lower is better)
Translates to: SIQHRTVSLLGPILQERIVISAS*NFRASN
Trigger: GTTGCTGGCCCTGAAGTTCAAACTGGCCGAAATAAC...GATTCTTTCCTGCAAAATGGGACCAAGCAAGGATACTGTTCTGTGTTGTATAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR CAA 90 bp TTCTCACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGTAATGTTGTAGCATTGTaGAGCACACTGGTTGCTGGC +
Preference number: 5 (lower is better)
Translates to: FSRDGLWRCIFLYTTQNSNVVAL*STLVAG
Trigger: GCCAGCAACCAGTGTGCTCAACAATGCTACAACATT...ACTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGTGAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020759.12
ENSMUST00000139713.2
CDS-3UTR CAA 90 bp ACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGTATCCTATTGGCATAGGTAGCTaGAGGTTCTGCATTCGTCGA +
Preference number: 5 (lower is better)
Translates to: TGWSVEVYISLYNTEQYPIGIGS*RFCIRR
Trigger: TCGACGAATGCAGAACCTCAAGCTACCTATGCCAAT...AGGATACTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS TCA 90 bp AAGGAACCTCGTAAATTGATGCATACTTGGTCCGTTCTACAATTGTaGGTCCCTGAGGTGCACTCATCAATATCTTGGCACACATTATGC +
Preference number: 5 (lower is better)
Translates to: KEPRKLMHTWSVLQL*VPEVHSSISWHTLC
Trigger: GCATAATGTGTGCCAAGATATTGATGAGTGCACCTCAGGGACTCACAATTGTAGAACGGACCAAGTATGCATCAATTTACGAGGTTCCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS TCA 90 bp AATGGTGTTTGCATAAATCATTGTTGCCTGTATCTGGAAGATGTCTaGAGGCACGGACCTGTCAGATCGGATGCTCATGTATTTGTAGAC +
Preference number: 5 (lower is better)
Translates to: NGVCINHCCLYLEDV*RHGPVRSDAHVFVD
Trigger: GTCTACAAATACATGAGCATCCGATCTGACAGGTCCGTGCCTTCAGACATCTTCCAGATACAGGCAACAATGATTTATGCAAACACCATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020759.12
ENSMUST00000139713.2
CDS-3UTR CAA 90 bp ACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGTATCCTTGCAGCTGGTGTTTCTaGCTGAGGATGCTCATTATT +
Preference number: 5 (lower is better)
Translates to: TGWSVEVYISLYNTEQYPCSWCF*LRMLII
Trigger: AATAATGAGCATCCTCAGCAAGAAACACCAGCTGCA...AGGATACTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR CAA 90 bp TCTATACAACACAGAACAGTATCCTTGCTTGGTCCCATTTTGCAGGAAAGAATCAATGTTGTAGCATTGTaGAGCACACTGGTTGCTGGC +
Preference number: 5 (lower is better)
Translates to: SIQHRTVSLLGPILQERINVVAL*STLVAG
Trigger: GCCAGCAACCAGTGTGCTCAACAATGCTACAACATT...GATTCTTTCCTGCAAAATGGGACCAAGCAAGGATACTGTTCTGTGTTGTATAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020759.12
ENSMUST00000139713.2
CDS-3UTR CAA 90 bp CTCTATACAACACAGAACAGTATCCTTGCTTGGTCCCATTTTGCAGGAAAGAATTGTGTTAACACATCTTaGGTGGCAATATGGAGGCAC +
Preference number: 5 (lower is better)
Translates to: LYTTQNSILAWSHFAGKNCVNTS*VAIWRH
Trigger: GTGCCTCCATATTGCCACCAAAGATGTGTTAACACA...ATTCTTTCCTGCAAAATGGGACCAAGCAAGGATACTGTTCTGTGTTGTATAGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR CAA 90 bp ATTCTCACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGTCTTCTCGGCATTCATaGGTGGTCTCACATTCATTT +
Preference number: 5 (lower is better)
Translates to: ILTGWSVEVYISLYNTEQSSRHS*VVSHSF
Trigger: AAATGAATGTGAGACCACCAATGAATGCCGAGAAGA...CTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGTGAGAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020759.12
ENSMUST00000139713.2
CDS-3UTR CAA 90 bp TCTATACAACACAGAACAGTATCCTTGCTTGGTCCCATTTTGCAGGAAAGAATCGCACTCATCAATATCTaGGCACACATTATGCTCACT +
Preference number: 5 (lower is better)
Translates to: SIQHRTVSLLGPILQERIALINI*AHIMLT
Trigger: AGTGAGCATAATGTGTGCCAAGATATTGATGAGTGC...GATTCTTTCCTGCAAAATGGGACCAAGCAAGGATACTGTTCTGTGTTGTATAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR CAA 90 bp CTCTATACAACACAGAACAGTATCCTTGCTTGGTCCCATTTTGCAGGAAAGAATAAGAATGTTGTAGCATaGTTGAGCACACTGGTTGCT +
Preference number: 5 (lower is better)
Translates to: LYTTQNSILAWSHFAGKNKNVVA*LSTLVA
Trigger: AGCAACCAGTGTGCTCAACAATGCTACAACATTCTT...ATTCTTTCCTGCAAAATGGGACCAAGCAAGGATACTGTTCTGTGTTGTATAGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020759.12
ENSMUST00000139713.2
CDS-3UTR CAA 90 bp TCTATACAACACAGAACAGTATCCTTGCTTGGTCCCATTTTGCAGGAAAGAATCTCTTCTCGGCATTCATaGGTGGTCTCACATTCATTT +
Preference number: 5 (lower is better)
Translates to: SIQHRTVSLLGPILQERISSRHS*VVSHSF
Trigger: AAATGAATGTGAGACCACCAATGAATGCCGAGAAGA...GATTCTTTCCTGCAAAATGGGACCAAGCAAGGATACTGTTCTGTGTTGTATAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020759.12
ENSMUST00000139713.2
CDS CCA 90 bp TCCTCCATAGTGGTTGACACATTTCATTCCACCTTTGCAAGCATCTaGGACAATGTCACATTCATCAATATCTTTACACTGCTGTCTTAT +
Preference number: 5 (lower is better)
Translates to: SSIVVDTFHSTFASI*DNVTFINIFTLLSY
Trigger: ATAAGACAGCAGTGTAAAGATATTGATGAATGTGACATTGTCCCAGATGCTTGCAAAGGTGGAATGAAATGTGTCAACCACTATGGAGGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS-3UTR CAA 90 bp TTCTCACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGTTTGCATAAATCATTGTaGCCTGTATCTGGAAGATGT +
Preference number: 5 (lower is better)
Translates to: FSRDGLWRCIFLYTTQNSLHKSL*PVSGRC
Trigger: ACATCTTCCAGATACAGGCAACAATGATTTATGCAA...ACTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGTGAGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020759.12
ENSMUST00000139713.2
CDS-3UTR CAA 90 bp ACGGGATGGTCTGTGGAGGTGTATATTTCTCTATACAACACAGAACAGTATCCTTGTTTGCATAAATCATaGTTGCCTGTATCTGGAAGA +
Preference number: 5 (lower is better)
Translates to: TGWSVEVYISLYNTEQYPCLHKS*LPVSGR
Trigger: TCTTCCAGATACAGGCAACAATGATTTATGCAAACA...AGGATACTGTTCTGTGTTGTATAGAGAAATATACACCTCCACAGACCATCCCGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020759.12
ENSMUST00000139713.2
CDS-3UTR CAA 90 bp CTCTATACAACACAGAACAGTATCCTTGCTTGGTCCCATTTTGCAGGAAAGAATTTGCATAAATCATTGTaGCCTGTATCTGGAAGATGT +
Preference number: 5 (lower is better)
Translates to: LYTTQNSILAWSHFAGKNLHKSL*PVSGRC
Trigger: ACATCTTCCAGATACAGGCAACAATGATTTATGCAA...ATTCTTTCCTGCAAAATGGGACCAAGCAAGGATACTGTTCTGTGTTGTATAGAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020759.12
ENSMUST00000139713.2
CDS-3UTR CAA 90 bp CTCTATACAACACAGAACAGTATCCTTGCTTGGTCCCATTTTGCAGGAAAGAATTGTTTGCATAAATCATaGTTGCCTGTATCTGGAAGA +
Preference number: 5 (lower is better)
Translates to: LYTTQNSILAWSHFAGKNCLHKS*LPVSGR
Trigger: TCTTCCAGATACAGGCAACAATGATTTATGCAAACA...ATTCTTTCCTGCAAAATGGGACCAAGCAAGGATACTGTTCTGTGTTGTATAGAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020759.12
ENSMUST00000139713.2
CDS CCA 72 bp CATAGCCTGCTGCACACTGGATCCGGTGGGAAGGGTTaGAAGGGATGCGCTGAGGGTCAGCTGGGTTTCTTC +
Preference number: 6 (lower is better)
Translates to: HSLLHTGSGGKG*KGCAEGQLGFF
Trigger: GAAGAAACCCAGCTGACCCTCAGCGCATCCCTTCCAACCCTTCCCACCGGATCCAGTGTGCAGCAGGCTATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS GCA 72 bp GTTATTTCGGCCAGTTTGAACTTCAGGGCCAGCAACTaGAGTAGCACTGGCCATGAAGCCACCCCCAGGCAC +
Preference number: 6 (lower is better)
Translates to: VISASLNFRASN*SSTGHEATPRH
Trigger: GTGCCTGGGGGTGGCTTCATGGCCAGTGCTACTGCAGTTGCTGGCCCTGAAGTTCAAACTGGCCGAAATAAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS TCA 72 bp CACTGGATCCGGTGGGAAGGGTTGGAAGGGATGCGCTaGGGGTCAGCTGGGTTTCTTCGGATGACAAAGTTA +
Preference number: 6 (lower is better)
Translates to: HWIRWEGLEGMR*GSAGFLRMTKL
Trigger: TAACTTTGTCATCCGAAGAAACCCAGCTGACCCTCAGCGCATCCCTTCCAACCCTTCCCACCGGATCCAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS CCA 72 bp GTGGGAAGGGTTGGAAGGGATGCGCTGAGGGTCAGCTaGGTTTCTTCGGATGACAAAGTTATTTCGGCCAGT +
Preference number: 6 (lower is better)
Translates to: VGRVGRDALRVS*VSSDDKVISAS
Trigger: ACTGGCCGAAATAACTTTGTCATCCGAAGAAACCCAGCTGACCCTCAGCGCATCCCTTCCAACCCTTCCCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS GCA 72 bp TTGGCACACATTATGCTCACTCTGTTCATAGCCTGCTaGACACTGGATCCGGTGGGAAGGGTTGGAAGGGAT +
Preference number: 6 (lower is better)
Translates to: LAHIMLTLFIAC*TLDPVGRVGRD
Trigger: ATCCCTTCCAACCCTTCCCACCGGATCCAGTGTGCAGCAGGCTATGAACAGAGTGAGCATAATGTGTGCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS GCA 72 bp ATCTTGGCACACATTATGCTCACTCTGTTCATAGCCTaGTGCACACTGGATCCGGTGGGAAGGGTTGGAAGG +
Preference number: 6 (lower is better)
Translates to: ILAHIMLTLFIA*CTLDPVGRVGR
Trigger: CCTTCCAACCCTTCCCACCGGATCCAGTGTGCAGCAGGCTATGAACAGAGTGAGCATAATGTGTGCCAAGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS CAA 90 bp AGGGTCAGCTGGGTTTCTTCGGATGACAAAGTTATTTCGGCCAGTTaGAACTTCAGGGCCAGCAACTGCAGTAGCACTGGCCATGAAGCC +
Preference number: 6 (lower is better)
Translates to: RVSWVSSDDKVISAS*NFRASNCSSTGHEA
Trigger: GGCTTCATGGCCAGTGCTACTGCAGTTGCTGGCCCTGAAGTTCAAACTGGCCGAAATAACTTTGTCATCCGAAGAAACCCAGCTGACCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS TCA 72 bp GGGTTTCTTCGGATGACAAAGTTATTTCGGCCAGTTTaGACTTCAGGGCCAGCAACTGCAGTAGCACTGGCC +
Preference number: 6 (lower is better)
Translates to: GFLRMTKLFRPV*TSGPATAVALA
Trigger: GGCCAGTGCTACTGCAGTTGCTGGCCCTGAAGTTCAAACTGGCCGAAATAACTTTGTCATCCGAAGAAACCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS TCA 72 bp AAGGGATGCGCTGAGGGTCAGCTGGGTTTCTTCGGATaGCAAAGTTATTTCGGCCAGTTTGAACTTCAGGGC +
Preference number: 6 (lower is better)
Translates to: KGCAEGQLGFFG*QSYFGQFELQG
Trigger: GCCCTGAAGTTCAAACTGGCCGAAATAACTTTGTCATCCGAAGAAACCCAGCTGACCCTCAGCGCATCCCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS GCA 72 bp GGAAGATGTCTGAAGGCACGGACCTGTCAGATCGGATaGTCATGTATTTGTAGACAATGGACTGGGGCAGCT +
Preference number: 6 (lower is better)
Translates to: GRCLKARTCQIG*SCICRQWTGAA
Trigger: AGCTGCCCCAGTCCATTGTCTACAAATACATGAGCATCCGATCTGACAGGTCCGTGCCTTCAGACATCTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020759.12
ENSMUST00000139713.2
CDS GCA 72 bp TGGTGGTCTCACATTCATTTATATCCTGACAGGTTCTaGTGCGCACCACTTCGTAACCCTGTGGGCACATAC +
Preference number: 6 (lower is better)
Translates to: WWSHIHLYPDRF*CAPLRNPVGTY
Trigger: GTATGTGCCCACAGGGTTACGAAGTGGTGCGCAGCAGAACCTGTCAGGATATAAATGAATGTGAGACCACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS CAA 72 bp TGGGTTTCTTCGGATGACAAAGTTATTTCGGCCAGTTaGAACTTCAGGGCCAGCAACTGCAGTAGCACTGGC +
Preference number: 6 (lower is better)
Translates to: WVSSDDKVISAS*NFRASNCSSTG
Trigger: GCCAGTGCTACTGCAGTTGCTGGCCCTGAAGTTCAAACTGGCCGAAATAACTTTGTCATCCGAAGAAACCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS CAA 90 bp TCGGTGCATTGCGTGTATGTGATGGTTTCCTCGGTGTACTGTGACTaGACCAGCGCCAGAGTCAGCATAGTTAGGAAAAGTGTTTGCAAC +
Preference number: 6 (lower is better)
Translates to: SVHCVYVMVSSVYCD*TSARVSIVRKSVCN
Trigger: GTTGCAAACACTTTTCCTAACTATGCTGACTCTGGCGCTGGTCAAGTCACAGTACACCGAGGAAACCATCACATACACGCAATGCACCGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS TCA 72 bp GCTGCGCACCACTTCGTAACCCTGTGGGCACATACATaGGAACTTCCCAGGTTCATTGACACATTGATATTG +
Preference number: 6 (lower is better)
Translates to: AAHHFVTLWAHT*ELPRFIDTLIL
Trigger: CAATATCAATGTGTCAATGAACCTGGGAAGTTCTCATGTATGTGCCCACAGGGTTACGAAGTGGTGCGCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS GCA 72 bp TGTCTTATGGGGTCCCATTCATATCCATCGGTGCATTaGGTGTATGTGATGGTTTCCTCGGTGTACTGTGAC +
Preference number: 6 (lower is better)
Translates to: CLMGSHSYPSVH*VYVMVSSVYCD
Trigger: GTCACAGTACACCGAGGAAACCATCACATACACGCAATGCACCGATGGATATGAATGGGACCCCATAAGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS GCA 72 bp TGGTCTCACATTCATTTATATCCTGACAGGTTCTGCTaGGCACCACTTCGTAACCCTGTGGGCACATACATG +
Preference number: 6 (lower is better)
Translates to: WSHIHLYPDRFC*APLRNPVGTYM
Trigger: CATGTATGTGCCCACAGGGTTACGAAGTGGTGCGCAGCAGAACCTGTCAGGATATAAATGAATGTGAGACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS CAA 72 bp TGCGTGTATGTGATGGTTTCCTCGGTGTACTGTGACTaGACCAGCGCCAGAGTCAGCATAGTTAGGAAAAGT +
Preference number: 6 (lower is better)
Translates to: CVYVMVSSVYCD*TSARVSIVRKS
Trigger: ACTTTTCCTAACTATGCTGACTCTGGCGCTGGTCAAGTCACAGTACACCGAGGAAACCATCACATACACGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS CAA 72 bp CTCTTGGTCCTGATAGAGACTTCACAAGCACCAGCATaGCACTCACAGGGCTTGTTTGTCGTAGGTAGAACT +
Preference number: 6 (lower is better)
Translates to: LLVLIETSQAPA*HSQGLFVVGRT
Trigger: AGTTCTACCTACGACAAACAAGCCCTGTGAGTGCAATGCTGGTGCTTGTGAAGTCTCTATCAGGACCAAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020759.12
ENSMUST00000139713.2
CDS CAA 90 bp CGATGTATTCTCTTGGTCCTGATAGAGACTTCACAAGCACCAGCATaGCACTCACAGGGCTTGTTTGTCGTAGGTAGAACTCTCCATTTT +
Preference number: 6 (lower is better)
Translates to: RCILLVLIETSQAPA*HSQGLFVVGRTLHF
Trigger: AAAATGGAGAGTTCTACCTACGACAAACAAGCCCTGTGAGTGCAATGCTGGTGCTTGTGAAGTCTCTATCAGGACCAAGAGAATACATCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020759.12
ENSMUST00000139713.2
CDS TCA 72 bp CCTGTGGGCACATACATGAGAACTTCCCAGGTTCATTaGCACATTGATATTGGCATAGGTAGCTTGAGGTTC +
Preference number: 6 (lower is better)
Translates to: PVGTYMRTSQVH*HIDIGIGSLRF
Trigger: GAACCTCAAGCTACCTATGCCAATATCAATGTGTCAATGAACCTGGGAAGTTCTCATGTATGTGCCCACAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS TCA 72 bp TGCATAAATCATTGTTGCCTGTATCTGGAAGATGTCTaGAGGCACGGACCTGTCAGATCGGATGCTCATGTA +
Preference number: 6 (lower is better)
Translates to: CINHCCLYLEDV*RHGPVRSDAHV
Trigger: TACATGAGCATCCGATCTGACAGGTCCGTGCCTTCAGACATCTTCCAGATACAGGCAACAATGATTTATGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020759.12
ENSMUST00000139713.2
CDS CCA 72 bp GGAACCAGGTGTGTTAACACATCTTTGGTGGCAATATaGAGGCACTGTGCATTCATCTATATCCACACACTG +
Preference number: 6 (lower is better)
Translates to: GTRCVNTSLVAI*RHCAFIYIHTL
Trigger: CAGTGTGTGGATATAGATGAATGCACAGTGCCTCCATATTGCCACCAAAGATGTGTTAACACACCTGGTTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS CAA 72 bp CTGGCAGTAGAAGGAACCAGGTGTGTTAACACATCTTaGGTGGCAATATGGAGGCACTGTGCATTCATCTAT +
Preference number: 6 (lower is better)
Translates to: LAVEGTRCVNTS*VAIWRHCAFIY
Trigger: ATAGATGAATGCACAGTGCCTCCATATTGCCACCAAAGATGTGTTAACACACCTGGTTCCTTCTACTGCCAG
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS TCA 72 bp GATGCATACTTGGTCCGTTCTACAATTGTGAGTCCCTaGGGTGCACTCATCAATATCTTGGCACACATTATG +
Preference number: 6 (lower is better)
Translates to: DAYLVRSTIVSP*GALINILAHIM
Trigger: CATAATGTGTGCCAAGATATTGATGAGTGCACCTCAGGGACTCACAATTGTAGAACGGACCAAGTATGCATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS TCA 72 bp CGTAAATTGATGCATACTTGGTCCGTTCTACAATTGTaGGTCCCTGAGGTGCACTCATCAATATCTTGGCAC +
Preference number: 6 (lower is better)
Translates to: RKLMHTWSVLQL*VPEVHSSISWH
Trigger: GTGCCAAGATATTGATGAGTGCACCTCAGGGACTCACAATTGTAGAACGGACCAAGTATGCATCAATTTACG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS GCA 72 bp ATACTTGGTCCGTTCTACAATTGTGAGTCCCTGAGGTaGACTCATCAATATCTTGGCACACATTATGCTCAC +
Preference number: 6 (lower is better)
Translates to: ILGPFYNCESLR*THQYLGTHYAH
Trigger: GTGAGCATAATGTGTGCCAAGATATTGATGAGTGCACCTCAGGGACTCACAATTGTAGAACGGACCAAGTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS CAA 90 bp TGCAGCTGGTGTTTCTTGCTGAGGATGCTCATTATTGACAATAATTaGGGCTGTTTTAGGAAGGCAGAGATATCCTCCATAGTGGTTGAC +
Preference number: 6 (lower is better)
Translates to: CSWCFLLRMLIIDNN*GCFRKAEISSIVVD
Trigger: GTCAACCACTATGGAGGATATCTCTGCCTTCCTAAAACAGCCCAAATTATTGTCAATAATGAGCATCCTCAGCAAGAAACACCAGCTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS GCA 72 bp TCTGGGACAATGTCACATTCATCAATATCTTTACACTaGTGTCTTATGGGGTCCCATTCATATCCATCGGTG +
Preference number: 6 (lower is better)
Translates to: SGTMSHSSISLH*CLMGSHSYPSV
Trigger: CACCGATGGATATGAATGGGACCCCATAAGACAGCAGTGTAAAGATATTGATGAATGTGACATTGTCCCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS CCA 72 bp TGTCACATTCATCAATATCTTTACACTGCTGTCTTATaGGGTCCCATTCATATCCATCGGTGCATTGCGTGT +
Preference number: 6 (lower is better)
Translates to: CHIHQYLYTAVL*GPIHIHRCIAC
Trigger: ACACGCAATGCACCGATGGATATGAATGGGACCCCATAAGACAGCAGTGTAAAGATATTGATGAATGTGACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS CCA 72 bp AATTCCAGCACATCTCATCTTCTCGGCATTCATTGGTaGTCTCACATTCATTTATATCCTGACAGGTTCTGC +
Preference number: 6 (lower is better)
Translates to: NSSTSHLLGIHW*SHIHLYPDRFC
Trigger: GCAGAACCTGTCAGGATATAAATGAATGTGAGACCACCAATGAATGCCGAGAAGATGAGATGTGCTGGAATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS CCA 72 bp GGTAATTCCAGCACATCTCATCTTCTCGGCATTCATTaGTGGTCTCACATTCATTTATATCCTGACAGGTTC +
Preference number: 6 (lower is better)
Translates to: GNSSTSHLLGIH*WSHIHLYPDRF
Trigger: GAACCTGTCAGGATATAAATGAATGTGAGACCACCAATGAATGCCGAGAAGATGAGATGTGCTGGAATTACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020759.12
CDS TCA 72 bp CACTGCTTAGTTCATATCCTTGATTACACTGACAGATaGATGAGCCAAGAATGTTGTAGCATTGTTGAGCAC +
Preference number: 6 (lower is better)
Translates to: HCLVHILDYTDR*MSQECCSIVEH
Trigger: GTGCTCAACAATGCTACAACATTCTTGGCTCATTCATCTGTCAGTGTAATCAAGGATATGAACTAAGCAGTG
40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020759.12
ENSMUST00000139713.2